AlfalfaGEDB | MS.gene64678

M. sativa cultivar XinJiangDaYe / MS.gene64678

KEGG: K01792
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005975 GO:0008150 GO:0008152 GO:0016853 GO:0030246 GO:0044238 GO:0071704
PFAM: PF01263.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64678.t1	XP_003612039.1	98.4	312	5	0	1	312	1	312	4.50E-181	643.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64678.t1	Q40784	34.8	273	157	8	50	303	33	303	3.2e-34	147.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64678.t1	G7KEX7	98.4	312	5	0	1	312	1	312	3.3e-181	643.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene64678	0.861007	1.39E-63	-1.69E-46
MS.gene049171	MS.gene64678	0.832686	8.20E-56	-1.69E-46
MS.gene049173	MS.gene64678	0.82964	4.60E-55	-1.69E-46
MS.gene049217	MS.gene64678	0.891433	3.99E-74	-1.69E-46
MS.gene049222	MS.gene64678	0.868418	6.63E-66	-1.69E-46
MS.gene049285	MS.gene64678	0.859748	3.34E-63	-1.69E-46
MS.gene049320	MS.gene64678	0.856841	2.45E-62	-1.69E-46
MS.gene049356	MS.gene64678	0.845419	4.11E-59	-1.69E-46
MS.gene049369	MS.gene64678	0.86298	3.45E-64	-1.69E-46
MS.gene04939	MS.gene64678	0.809181	2.15E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64678.t1	MTR_5g020640	98.397	312	5	0	1	312	1	312	0.0	642
MS.gene64678.t1	MTR_5g020640	96.996	233	7	0	1	233	1	233	1.89e-170	472
MS.gene64678.t1	MTR_5g009670	32.526	289	176	7	41	312	15	301	2.18e-42	148
MS.gene64678.t1	MTR_2g036810	33.449	287	170	7	43	310	14	298	1.14e-40	144
MS.gene64678.t1	MTR_4g005740	31.633	294	180	7	36	310	3	294	7.71e-38	137
MS.gene64678.t1	MTR_6g004520	32.404	287	176	7	39	310	1	284	1.86e-36	133
MS.gene64678.t1	MTR_6g004520	32.404	287	176	7	39	310	59	342	5.00e-36	133
MS.gene64678.t1	MTR_6g004520	32.404	287	176	7	39	310	48	331	5.41e-36	132
MS.gene64678.t1	MTR_7g116910	31.034	290	180	7	40	311	13	300	1.54e-35	130
MS.gene64678.t1	MTR_5g009670	35.377	212	128	4	41	245	15	224	2.74e-34	125

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64678.t1	AT5G66530	78.261	276	60	0	37	312	32	307	6.98e-167	466
MS.gene64678.t1	AT5G66530	78.261	276	60	0	37	312	32	307	6.98e-167	466
MS.gene64678.t1	AT5G66530	78.261	276	60	0	37	312	32	307	6.98e-167	466
MS.gene64678.t1	AT5G66530	78.261	276	60	0	37	312	4	279	1.06e-166	464
MS.gene64678.t1	AT5G57330	33.333	294	163	8	42	310	9	294	9.98e-41	144
MS.gene64678.t1	AT4G23730	33.929	280	164	8	52	312	26	303	1.31e-40	144
MS.gene64678.t1	AT3G01590	33.798	287	164	8	45	312	8	287	4.60e-40	142
MS.gene64678.t1	AT3G01590	33.798	287	164	8	45	312	8	287	4.60e-40	142
MS.gene64678.t1	AT4G23730	33.566	286	163	9	52	312	26	309	8.92e-39	139
MS.gene64678.t1	AT5G14500	32.246	276	170	6	52	312	14	287	1.42e-38	138

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Find 72 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGGTCTTTGCCATT+AGG	0.336299	5.2:-11911931	None:intergenic
AAACACAATCTACAAATCCT+GGG	0.586977	5.2:-11913995	None:intergenic
AAAGTAAGTAAGAACCTTAT+TGG	0.201080	5.2:-11911988	None:intergenic
AAGTTTGTTCAGGCTCGAGC+TGG	0.490832	5.2:-11914494	None:intergenic
ACAGCTGTCCAAGTTTGTTC+AGG	0.442315	5.2:-11914504	None:intergenic
ACAGTTACCTTTCAGAACCG+TGG	0.663805	5.2:+11911621	MS.gene64678:CDS
ACTTCCTGGAAAGTTCCTAA+TGG	0.431111	5.2:+11911916	MS.gene64678:CDS
AGAACCGTGGTCGATACAAC+AGG	0.489570	5.2:+11911634	MS.gene64678:CDS
AGATCCTAATAATCCAATTG+AGG	0.529404	5.2:+11913451	MS.gene64678:CDS
AGCTCGAGCCTGAACAAACT+TGG	0.418791	5.2:+11914496	MS.gene64678:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCATCTGTACTTGGTT+AGG	-	chr5.2:11913250-11913269	None:intergenic	30.0%
AAACACAATCTACAAATCCT+GGG	-	chr5.2:11913998-11914017	None:intergenic	30.0%
ACATTTGGTATTATGTTTGC+TGG	+	chr5.2:11913192-11913211	MS.gene64678:intron	30.0%
AGATCCTAATAATCCAATTG+AGG	+	chr5.2:11913451-11913470	MS.gene64678:CDS	30.0%
ATTAAGCTGTTTATCCAAAC+AGG	-	chr5.2:11912177-11912196	None:intergenic	30.0%
CAGCTTTCATGCTTTATATA+AGG	+	chr5.2:11912909-11912928	MS.gene64678:CDS	30.0%
CATGAAATCACATCATGATT+TGG	-	chr5.2:11913002-11913021	None:intergenic	30.0%
CTGTAACATACTTTACTTCT+GGG	+	chr5.2:11913489-11913508	MS.gene64678:intron	30.0%
GATCCTAATAATCCAATTGA+GGG	+	chr5.2:11913452-11913471	MS.gene64678:CDS	30.0%
TAAACACAATCTACAAATCC+TGG	-	chr5.2:11913999-11914018	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	11911585	11914548	11911585	ID=MS.gene64678
chr5.2	mRNA	11911585	11914548	11911585	ID=MS.gene64678.t1;Parent=MS.gene64678
chr5.2	exon	11911585	11911655	11911585	ID=MS.gene64678.t1.exon1;Parent=MS.gene64678.t1
chr5.2	CDS	11911585	11911655	11911585	ID=cds.MS.gene64678.t1;Parent=MS.gene64678.t1
chr5.2	exon	11911771	11911995	11911771	ID=MS.gene64678.t1.exon2;Parent=MS.gene64678.t1
chr5.2	CDS	11911771	11911995	11911771	ID=cds.MS.gene64678.t1;Parent=MS.gene64678.t1
chr5.2	exon	11912467	11912518	11912467	ID=MS.gene64678.t1.exon3;Parent=MS.gene64678.t1
chr5.2	CDS	11912467	11912518	11912467	ID=cds.MS.gene64678.t1;Parent=MS.gene64678.t1
chr5.2	exon	11912793	11912930	11912793	ID=MS.gene64678.t1.exon4;Parent=MS.gene64678.t1
chr5.2	CDS	11912793	11912930	11912793	ID=cds.MS.gene64678.t1;Parent=MS.gene64678.t1
chr5.2	exon	11913037	11913135	11913037	ID=MS.gene64678.t1.exon5;Parent=MS.gene64678.t1
chr5.2	CDS	11913037	11913135	11913037	ID=cds.MS.gene64678.t1;Parent=MS.gene64678.t1
chr5.2	exon	11913389	11913486	11913389	ID=MS.gene64678.t1.exon6;Parent=MS.gene64678.t1
chr5.2	CDS	11913389	11913486	11913389	ID=cds.MS.gene64678.t1;Parent=MS.gene64678.t1
chr5.2	exon	11913980	11914087	11913980	ID=MS.gene64678.t1.exon7;Parent=MS.gene64678.t1
chr5.2	CDS	11913980	11914087	11913980	ID=cds.MS.gene64678.t1;Parent=MS.gene64678.t1
chr5.2	exon	11914174	11914255	11914174	ID=MS.gene64678.t1.exon8;Parent=MS.gene64678.t1
chr5.2	CDS	11914174	11914255	11914174	ID=cds.MS.gene64678.t1;Parent=MS.gene64678.t1
chr5.2	exon	11914483	11914548	11914483	ID=MS.gene64678.t1.exon9;Parent=MS.gene64678.t1
chr5.2	CDS	11914483	11914548	11914483	ID=cds.MS.gene64678.t1;Parent=MS.gene64678.t1

Gene Sequence

>MS.gene64678

ATGGCGATGGCTTCAATGGCATTCTGTGGTGTCAACACAGTTACCTTTCAGAACCGTGGTCGATACAACAGGTTAATCAAAATCCATCAATCCATAGTTTTCTTTCACTTCAGCCTTTTTTTTTTCTCTTCCAAATTTTCTAGCTTGTAGTAATTCATTTAACTTTTTTTTATTTTTGCGATGTAGTGGAATTGCATTTGCGAGTTTGGGAAATAAAGAAAAAACTACTTTGGGAGTAAAAGTTACCGAAGGTGAAGGAAATTTGCCTAAACTTGTTCTCACTTCTCCAGCTGGTAGCGAGGCTGAGATATATTTGTTTGGTGGTTGCATTACTTCCTGGAAAGTTCCTAATGGCAAAGACCTTCTTTTTGTTCGTCCTGACGCCGTTTTTAATAAGAAGAAACCAATAAGGTTCTTACTTACTTTTAATTACTTCTTCTATTAGTTACTATGAAGCACCGACACTGACACGAACACCAGACATAATAGTGACACAGATACGTAGTGATTGAATGTAACCATGTGTCAGACACATTTTAAATATGAAGTGAGGGTGTTATATATTTATTACATTGTTATTTACAAAGGCCCTGTTTGGATAAACAGCTTAATTTATAACTTAAAGTATAATCACTAAGAGCTCAGTATAACAAAAGATAAAATAAAGTTTTTGTTAAAGTTATAAGTTGTTTTAATAAGCTGTCTTGGAGAGCTTATGAAAATAAGCTGAAAACAACTTATGAACATGTCATAAGTTGTTTTCATAAGTTCTTCCAAACAATCTCACAAGTGTTTATGCCGGTAGATAAACTCAAATGAACCAATCCAAACAGGCCCTAATTTGGGATCTCTTGGATACTGATTAATTTTCTTCTGGAACAGTGGAGGTATCCCACATTGCTTTCCACAGTTTGGTCCTGGTGCAATTCAGCAGGTATGTTCCTTTATTCAATGTTATTTTCTTGCAGGTTCATGTTGTTCTGTTTGTCAATGTTACTTATATTCAATTCAATTACAAAAATTTGAGGATTAATTGGTTTTGGTATGACTGCTATATACATGCTATTTTATGTAGCTTAGCGAAAATAGTGATTGCAACTTTTGTGCTTAATATTTGGTTGATAAAAGTTGCTTCTCTTTGACGAAAAATTAAGAGTAATTTGTTGTGATGACTTGTTAAAATGTTTGTTTGGTTGAGTATTTAACAGCATGGATTTGCAAGGAATTTGGATTGGACTGTTGGTGATTCTGAGAATGTCGAGGGAAATCCTGTTGTAACTCTGGAACTGAAGGATGATACGTATAGTCGTGCTATGTGGGATTTCAGCTTTCATGCTTTATATAAGGTTGTCAAGGACTTGTTTTCTTCAAGCACAACTCACATTTTCAATACTACTAGATTATGATTCTGTTACCAAATCATGATGTGATTTCATGCTTTCATTTTTGCAGATCACACTAAATGCTAAAAGTCTTTCGACTGAGTTAAAAGTTAAAAATACTGACAACAAGGCATTCTCATTCAATACTGCCCTGCACACATACTTTCGGGTAAATTTGAATAATCACTAAATAGGGTTTTATATTTGTGCTTGAATATTATTTTGACATTTGGTATTATGTTTGCTGGATATCTGAACGGATACTAAGCATCTGACGATGCCTAACCAAGTACAGATGATTTTCATCCAATTATTGTTTGAATGAGTTGAAATTATTCAAATGCATGGTTTTTTAACTCAATTTTATTGCTTACACTTGCTGCTTAAACTTTTGAAAGTAATCATTTTGTCATTATACACAGGCTTCTGTAAGTGGTGCATCAGTTAAGGGGTTAAAAGGTTGCAAAACTCTGAACAAACATCCAGATCCTAATAATCCAATTGAGGGTAGTGAAGAAAGGTCTGTAACATACTTTACTTCTGGGAGTTCTTAAATTAAAACTTGACATGGTAAGTGGTAACTACTTGTACAGGAGAAAGAAAATTCTAACTACTGAAATTTGCCTTCCCTTAGCCTTAGCCAAGTGGTTGGATAAAAAGTTGTACTACCTATGGAGTATTTCAAATTATCTTTACTGTGTGAGACATGCCCATACATGCATTTTCATGTGCATAACTGTTGCATGACTAAAAAGCCTACCTTCTTTATCTCCCTCATTTTGTATGAATTTGAACTAGATTCTGTATTATTTCATTCATTTAGTGGCTAATTTCTAATCTTGTTTCTTTCAATTTTCACTCGTTCACACAATAGTGTCATCTTTCATATATAGCACAAGTATATTTTTTCTCAATATAATCCATATAAGACCAAAATTGCATTGAATGATAAAGAATCAAATCTCGAAATTGAGTCTCTTGATTTAGCTTAATAGACCATCTTCGTAATGCAGGGATGTGGTCACTTTCCCAGGATTTGTAGATTGTGTTTATCTTAACGCTTCAGATGAGTTGCAGCTTGATAATGGCTTGGGTGATATAATTTCTATCAAGAACACGAAGTATGCAATTTTAAGCTTATATTACAACTTTACTATTTGATTGCCCAAGTCAAGTGCTTACACTTTCTTGCCTCTTACCCATGTAGCTGGTCAGATGCGGTGTTGTGGAATCCTCATCTTCAAATGGAAGCATGTTACAAAGATTTTGTTTGTGTTGAAAATGCTAAGGTAATGAGTTTACAAACTTTATAAAAAGGCGTCGAAGACATACCCTGCTAGACTGTGCACTGTTCTTGACTACAACGTCAATATGATGGCGATTGAATTCAAATAACTGGTTGTAGTTTTTTAACTCGTCACAGAGCTTCATGCAGTGTTATGATATCTGGCACAATGCTCAAGCTTTCTTGATTTATTCTTCTGAATTATAATTTCTACTATTTTTAATGCTTCAGATTGGAAATGTCCAGCTCGAGCCTGAACAAACTTGGACAGCTGTGCAGCATCTTACCATTGCATGA

Protein sequence

>MS.gene64678.t1

MAMASMAFCGVNTVTFQNRGRYNSGIAFASLGNKEKTTLGVKVTEGEGNLPKLVLTSPAGSEAEIYLFGGCITSWKVPNGKDLLFVRPDAVFNKKKPISGGIPHCFPQFGPGAIQQHGFARNLDWTVGDSENVEGNPVVTLELKDDTYSRAMWDFSFHALYKITLNAKSLSTELKVKNTDNKAFSFNTALHTYFRASVSGASVKGLKGCKTLNKHPDPNNPIEGSEERDVVTFPGFVDCVYLNASDELQLDNGLGDIISIKNTNWSDAVLWNPHLQMEACYKDFVCVENAKIGNVQLEPEQTWTAVQHLTIA