AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68944


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68944.t1 MTR_4g132360 99.017 407 4 0 1 407 27 433 0.0 834
MS.gene68944.t1 MTR_4g132360 99.017 407 4 0 1 407 1 407 0.0 832
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68944.t1 AT1G11860 88.480 408 46 1 1 407 16 423 0.0 756
MS.gene68944.t1 AT1G11860 88.480 408 46 1 1 407 1 408 0.0 756
MS.gene68944.t1 AT1G11860 88.480 408 46 1 1 407 1 408 0.0 756

Find 106 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATTCTGTCTACAGTTTA+AGG 0.095824 8.2:+1726865 None:intergenic
GCTGCACTTGCACCTGGAAC+TGG 0.228296 8.2:-1726752 MS.gene68944:CDS
CGTGTCGGTTTCATTTCTTC+TGG 0.292466 8.2:-1724707 MS.gene68944:CDS
AACAGCCTTCTTATCTCCTT+TGG 0.351564 8.2:+1727027 None:intergenic
TTTGTCAGATGTTGAAGAAC+TGG 0.361087 8.2:+1725939 None:intergenic
ATTTGAGCAAGCTATACTTT+GGG 0.366140 8.2:-1725911 MS.gene68944:CDS
CCACGACACATCGCCACCTT+TGG 0.366261 8.2:+1726577 None:intergenic
CAGTGCTTTCTCACACGAAC+AGG 0.368706 8.2:-1725858 MS.gene68944:CDS
ACAGTCAATGTCCCAGTTCC+AGG 0.369500 8.2:+1726740 None:intergenic
GGTAAGATGGTCCCATTTGC+TGG 0.377933 8.2:-1726932 MS.gene68944:CDS
CACGGATCATCACATTTACT+TGG 0.383116 8.2:-1726666 MS.gene68944:CDS
AATGAAACCGACACGCCTTA+TGG 0.386619 8.2:+1724715 None:intergenic
ATTGAGTCCTTGTATTGAAT+AGG 0.387519 8.2:+1726899 None:intergenic
GATTTGAGCAAGCTATACTT+TGG 0.389150 8.2:-1725912 MS.gene68944:CDS
GCTATGGGATATGTCAAATC+TGG 0.392835 8.2:-1724584 MS.gene68944:CDS
CATGTCAGTCCTGCCTCAAT+TGG 0.393243 8.2:+1724818 None:intergenic
TCGAATAATGATCTTAACTT+TGG 0.398115 8.2:+1724544 None:intergenic
TGAGGCTTAAACCACACATA+TGG 0.412409 8.2:+1726825 None:intergenic
GGCATGCTCCATCCAGCAAA+TGG 0.421339 8.2:+1726920 None:intergenic
CGAGACGGCGAGTGATTGAT+TGG 0.422491 8.2:+1727050 None:intergenic
GCAGGACTGACATGGGCTAT+AGG 0.434359 8.2:-1724809 MS.gene68944:CDS
GATGTTGCTGCACTTGCACC+TGG 0.440477 8.2:-1726758 MS.gene68944:CDS
GTTCCATGTCATTGCCATAC+AGG 0.440802 8.2:+1724852 None:intergenic
TAAAGATTTGGCTCATATTG+AGG 0.461019 8.2:-1726621 MS.gene68944:CDS
GATAGTCTACGCCTTGAAGC+TGG 0.463158 8.2:-1724881 MS.gene68944:CDS
CGGGTGCAGAGATAAAGATT+TGG 0.471255 8.2:-1726633 MS.gene68944:CDS
ATTTACTTGGTTGTGAATGC+CGG 0.472947 8.2:-1726653 MS.gene68944:CDS
CTGCACTTGCACCTGGAACT+GGG 0.475000 8.2:-1726751 MS.gene68944:CDS
TCGCAGATGGGCCTTCCATA+AGG 0.475721 8.2:-1724730 MS.gene68944:CDS
TATGACTTCCATGTTGCTCA+TGG 0.477864 8.2:-1726956 MS.gene68944:CDS
GAAGCTGGATTGTGCCTGTA+TGG 0.487628 8.2:-1724866 MS.gene68944:CDS
AAAGTAAGATTGACAGGACT+TGG 0.489168 8.2:-1724911 MS.gene68944:CDS
CGATGATTCCGTCATTACTA+AGG 0.491345 8.2:-1726690 MS.gene68944:CDS
GGAGCATATGAAGGCATTCA+AGG 0.494274 8.2:-1726600 MS.gene68944:CDS
TTCAGGTACACTGGAGAAGA+TGG 0.494370 8.2:-1725004 MS.gene68944:intron
GAAGGGAAAGTAAGATTGAC+AGG 0.496499 8.2:-1724917 MS.gene68944:CDS
ACAGGCACAATCCAGCTTCA+AGG 0.498434 8.2:+1724870 None:intergenic
CACAGTGAGATTCAAGATGA+AGG 0.499277 8.2:-1724668 MS.gene68944:CDS
ATCTTGAAACAGCTCGCAGA+TGG 0.500506 8.2:-1724743 MS.gene68944:CDS
GAGAACTCTACTTGCTCTAC+AGG 0.511392 8.2:-1726540 MS.gene68944:intron
TCTCAAGAAGAACATAGCTA+TGG 0.511968 8.2:-1724600 MS.gene68944:CDS
TTGTCAGATGTTGAAGAACT+GGG 0.514475 8.2:+1725940 None:intergenic
TCAATACAAGGACTCAATCA+TGG 0.514848 8.2:-1726894 MS.gene68944:CDS
AAAGTTAAGATCATTATTCG+AGG 0.516211 8.2:-1724542 MS.gene68944:CDS
TTGAAGAACTGGGGCAGCAA+GGG 0.519281 8.2:+1725950 None:intergenic
CTTTGGGGAGTTCCGTGTGT+TGG 0.519486 8.2:-1725895 MS.gene68944:CDS
GAGGCTTAAACCACACATAT+GGG 0.524691 8.2:+1726826 None:intergenic
GGTAAGAGGAGAAGAGCAGA+AGG 0.526634 8.2:-1724788 MS.gene68944:CDS
AATGCTGAATGGAATTATGT+AGG 0.529600 8.2:+1724461 None:intergenic
TTCCGTGTGTTGGACATCAA+TGG 0.531417 8.2:-1725885 MS.gene68944:CDS
AAATCTGGATTGCACAAAGC+AGG 0.532141 8.2:-1724569 MS.gene68944:CDS
CAAATCTTTATCTCTGCACC+CGG 0.534279 8.2:+1726634 None:intergenic
AGATCTACTGCATGCTCTGA+AGG 0.534907 8.2:+1724965 None:intergenic
TGACATGGGCTATAGGTAAG+AGG 0.535235 8.2:-1724802 MS.gene68944:CDS
GCATGCTCCATCCAGCAAAT+GGG 0.538514 8.2:+1726921 None:intergenic
AGATGGTCCCATTTGCTGGA+TGG 0.545407 8.2:-1726928 MS.gene68944:CDS
ATCACTCGCCGTCTCGCCAA+AGG 0.550095 8.2:-1727043 MS.gene68944:CDS
TGTTGCTCATGGTGGTAAGA+TGG 0.550452 8.2:-1726945 MS.gene68944:CDS
ATCTCACTGTGACTTCTAGC+AGG 0.551600 8.2:+1724680 None:intergenic
ATTCGAGGAAAAGCGAATGA+AGG 0.553509 8.2:-1724527 MS.gene68944:CDS
CAATTGAGGCAGGACTGACA+TGG 0.553672 8.2:-1724817 MS.gene68944:CDS
ACCTTAAACTGTAGACAGAA+TGG 0.555354 8.2:-1726866 MS.gene68944:CDS
ATCCGTGACCTTAGTAATGA+CGG 0.556090 8.2:+1726682 None:intergenic
CACATTACACCAATTGAGGC+AGG 0.557962 8.2:-1724827 MS.gene68944:CDS
CTCAAGAAGAACATAGCTAT+GGG 0.560245 8.2:-1724599 MS.gene68944:CDS
CAGCAATGACTAACTTCTCA+AGG 0.560821 8.2:+1726780 None:intergenic
TTTCACTAATGAAAAGGGAG+GGG 0.561108 8.2:-1726717 MS.gene68944:CDS
TCTTATCTCCTTTGGCGAGA+CGG 0.561346 8.2:+1727035 None:intergenic
AAGAGGAGAAGAGCAGAAGG+TGG 0.562050 8.2:-1724785 MS.gene68944:CDS
TTTACTTGGTTGTGAATGCC+GGG 0.565276 8.2:-1726652 MS.gene68944:CDS
TTTGAGCAAGCTATACTTTG+GGG 0.565692 8.2:-1725910 MS.gene68944:CDS
CCAAAGGTGGCGATGTGTCG+TGG 0.566131 8.2:-1726577 MS.gene68944:CDS
TCATATTGAGGAGCATATGA+AGG 0.571587 8.2:-1726609 MS.gene68944:CDS
ACAGCACATTACACCAATTG+AGG 0.576791 8.2:-1724831 MS.gene68944:CDS
GTTGAAGAACTGGGGCAGCA+AGG 0.578097 8.2:+1725949 None:intergenic
TTCCGTCATTACTAAGGTCA+CGG 0.578576 8.2:-1726684 MS.gene68944:CDS
TCTCGCCAAAGGAGATAAGA+AGG 0.581288 8.2:-1727032 MS.gene68944:CDS
TGCTCGCAGATGTTTCGCTA+CGG 0.581316 8.2:-1727005 MS.gene68944:CDS
TATGTGTGGTTTAAGCCTCA+AGG 0.587234 8.2:-1726822 MS.gene68944:CDS
ATTGGTGAAGTCACCAGTGG+TGG 0.588887 8.2:-1724635 MS.gene68944:CDS
TTTGATGTTGCCCATATGTG+TGG 0.589064 8.2:-1726836 MS.gene68944:CDS
AATGGGACCTTCAGGTACAC+TGG 0.589980 8.2:-1725013 MS.gene68944:intron
GAGCATGCCTATTCAATACA+AGG 0.590247 8.2:-1726906 MS.gene68944:CDS
GATGAAGGAGGCAACAACAT+TGG 0.591706 8.2:-1724653 MS.gene68944:CDS
ATGTGTGGTTTAAGCCTCAA+GGG 0.600077 8.2:-1726821 MS.gene68944:CDS
AAACCGACACGCCTTATGGA+AGG 0.613652 8.2:+1724719 None:intergenic
TGAAGAACTGGGGCAGCAAG+GGG 0.616239 8.2:+1725951 None:intergenic
TCTTGAAACAGCTCGCAGAT+GGG 0.619088 8.2:-1724742 MS.gene68944:CDS
GGGCCTTCCATAAGGCGTGT+CGG 0.619838 8.2:-1724722 MS.gene68944:CDS
GCTATGTTCTTCTTGAGACA+AGG 0.620242 8.2:+1724605 None:intergenic
ATGAAGGCATTCAAGGCCAA+AGG 0.623728 8.2:-1726593 MS.gene68944:CDS
TCTTACCACCATGAGCAACA+TGG 0.638546 8.2:+1726948 None:intergenic
AAGGCATTCAAGGCCAAAGG+TGG 0.641633 8.2:-1726590 MS.gene68944:CDS
TTGCTTAAGAAAATGAGAGG+GGG 0.643458 8.2:-1727088 None:intergenic
ACAAGGACTGAATCCACCAC+TGG 0.645512 8.2:+1724622 None:intergenic
GTGCCTGTATGGCAATGACA+TGG 0.646918 8.2:-1724855 MS.gene68944:CDS
TCACTGTGACTTCTAGCAGG+TGG 0.649253 8.2:+1724683 None:intergenic
TTTGCTTAAGAAAATGAGAG+GGG 0.657966 8.2:-1727089 None:intergenic
AATTGAGGCAGGACTGACAT+GGG 0.658168 8.2:-1724816 MS.gene68944:CDS
AGCCATTGATGTCCAACACA+CGG 0.669129 8.2:+1725883 None:intergenic
GACTTCCATGTTGCTCATGG+TGG 0.670134 8.2:-1726953 MS.gene68944:CDS
GCATGCAGTAGATCTTGCCA+AGG 0.674997 8.2:-1724957 MS.gene68944:CDS
TGTCAGATGTTGAAGAACTG+GGG 0.678176 8.2:+1725941 None:intergenic
AGTGCTTTCTCACACGAACA+GGG 0.685092 8.2:-1725857 MS.gene68944:intron
AGTGAGATTCAAGATGAAGG+AGG 0.687463 8.2:-1724665 MS.gene68944:CDS
AACATTGGTGAAGTCACCAG+TGG 0.698722 8.2:-1724638 MS.gene68944:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CACATTTTATAATTTAGATT+TGG + chr8.2:1726119-1726138 None:intergenic 15.0%
!!! GATTAAATGATTTTAATTAG+AGG - chr8.2:1725871-1725890 MS.gene68944:CDS 15.0%
!!! TTCATTTGATTTGATTTTTT+GGG - chr8.2:1725964-1725983 MS.gene68944:intron 15.0%
!! TCTTAAAAATTGAAATGAAG+AGG + chr8.2:1725181-1725200 None:intergenic 20.0%
!! TTAAAAAGTTCAGTTTGATT+TGG + chr8.2:1726014-1726033 None:intergenic 20.0%
!! TTAGTGATTTAAATCAGATT+GGG + chr8.2:1725911-1725930 None:intergenic 20.0%
!! TTTAGTGATTTAAATCAGAT+TGG + chr8.2:1725912-1725931 None:intergenic 20.0%
!!! AAATCAAATGAACACATTTT+TGG + chr8.2:1725956-1725975 None:intergenic 20.0%
!!! CATAGAATTTGTTTTAACTT+AGG - chr8.2:1726037-1726056 MS.gene68944:intron 20.0%
!!! GTTCATTTGATTTGATTTTT+TGG - chr8.2:1725963-1725982 MS.gene68944:intron 20.0%
! AAAGTTAAGATCATTATTCG+AGG - chr8.2:1727009-1727028 MS.gene68944:CDS 25.0%
! AGATATAGTTGGATATTTGT+TGG - chr8.2:1726363-1726382 MS.gene68944:intron 25.0%
! CAAAAGAAAATTACAGTGAT+AGG + chr8.2:1725849-1725868 None:intergenic 25.0%
! CAATACTTGAAAAATCTGAA+GGG - chr8.2:1726617-1726636 MS.gene68944:CDS 25.0%
! TCGAATAATGATCTTAACTT+TGG + chr8.2:1727010-1727029 None:intergenic 25.0%
!! ACTGTTTTCACTAATGAAAA+GGG - chr8.2:1724829-1724848 MS.gene68944:CDS 25.0%
!! CAAGTGTATTATCCTTTTTA+GGG - chr8.2:1725227-1725246 MS.gene68944:intron 25.0%
!! GAAGTTTTTCTTATTGTCTT+TGG - chr8.2:1725568-1725587 MS.gene68944:intron 25.0%
!! TCAAGTGTATTATCCTTTTT+AGG - chr8.2:1725226-1725245 MS.gene68944:intron 25.0%
!!! AAGTGTTGAAAATAGATTGA+GGG - chr8.2:1725501-1725520 MS.gene68944:intron 25.0%
!!! CAATTTTTTTTCTCTCTCAA+AGG - chr8.2:1726308-1726327 MS.gene68944:intron 25.0%
!!! TTACATTTTGAAGTCTGATT+TGG - chr8.2:1725987-1726006 MS.gene68944:intron 25.0%
!!! TTTTAAGATCTATAGCATAG+TGG - chr8.2:1725193-1725212 MS.gene68944:intron 25.0%
ACATAACAACACACTCTAAT+GGG - chr8.2:1726521-1726540 MS.gene68944:intron 30.0%
ATACCTCTGTTAGATATAGT+TGG - chr8.2:1726352-1726371 MS.gene68944:intron 30.0%
ATAGTCAAATTGACACAACA+AGG + chr8.2:1725817-1725836 None:intergenic 30.0%
ATTGAAATGCACAGTATATC+AGG + chr8.2:1726175-1726194 None:intergenic 30.0%
ATTGAGTCCTTGTATTGAAT+AGG + chr8.2:1724655-1724674 None:intergenic 30.0%
ATTTGAGCAAGCTATACTTT+GGG - chr8.2:1725640-1725659 MS.gene68944:intron 30.0%
GCAATACTTGAAAAATCTGA+AGG - chr8.2:1726616-1726635 MS.gene68944:CDS 30.0%
TACATAACAACACACTCTAA+TGG - chr8.2:1726520-1726539 MS.gene68944:intron 30.0%
TATCCAACTATATCTAACAG+AGG + chr8.2:1726358-1726377 None:intergenic 30.0%
TTATTTACGATCCAATCACA+AGG + chr8.2:1726273-1726292 None:intergenic 30.0%
TTGACACAACAAGGAATTTA+AGG + chr8.2:1725808-1725827 None:intergenic 30.0%
TTGTGATTGGATCGTAAATA+AGG - chr8.2:1726272-1726291 MS.gene68944:intron 30.0%
! ACTATATCTAACAGAGGTAT+TGG + chr8.2:1726352-1726371 None:intergenic 30.0%
! AGTTGCAAGTTAGTTTAGTT+TGG - chr8.2:1726411-1726430 MS.gene68944:intron 30.0%
! CTAAGAATAAACTGCTACTT+TGG + chr8.2:1725758-1725777 None:intergenic 30.0%
! GACTGTTTTCACTAATGAAA+AGG - chr8.2:1724828-1724847 MS.gene68944:CDS 30.0%
! TAAAGATTTGGCTCATATTG+AGG - chr8.2:1724930-1724949 MS.gene68944:CDS 30.0%
! TAGTATTTTGTGGGTACAAA+TGG + chr8.2:1727066-1727085 None:intergenic 30.0%
! TGTTTGTGTTATTGAGTCAT+AGG - chr8.2:1726460-1726479 MS.gene68944:intron 30.0%
! TTGGATATTTGTTGGAAAGT+TGG - chr8.2:1726371-1726390 MS.gene68944:intron 30.0%
! TTTTCACTAATGAAAAGGGA+GGG - chr8.2:1724833-1724852 MS.gene68944:CDS 30.0%
!! GAAGTGTTGAAAATAGATTG+AGG - chr8.2:1725500-1725519 MS.gene68944:intron 30.0%
!!! AGATTTTTCAAGTATTGCCT+TGG + chr8.2:1726614-1726633 None:intergenic 30.0%
!!! TTTTTGGTTTTCGATTTGTC+AGG + chr8.2:1725940-1725959 None:intergenic 30.0%
AAAGTAAGATTGACAGGACT+TGG - chr8.2:1726640-1726659 MS.gene68944:CDS 35.0%
AACCACACACACACAAAAAA+AGG + chr8.2:1725727-1725746 None:intergenic 35.0%
ACCATTCTGTCTACAGTTTA+AGG + chr8.2:1724689-1724708 None:intergenic 35.0%
ACCTTAAACTGTAGACAGAA+TGG - chr8.2:1724685-1724704 MS.gene68944:CDS 35.0%
AGTTGAAACACTCCCTAAAA+AGG + chr8.2:1725242-1725261 None:intergenic 35.0%
AGTTGATCCAGTACATTCTA+AGG - chr8.2:1725363-1725382 MS.gene68944:intron 35.0%
ATTTACTTGGTTGTGAATGC+CGG - chr8.2:1724898-1724917 MS.gene68944:CDS 35.0%
CAAGGTAGTATAAAGCGATT+TGG + chr8.2:1726255-1726274 None:intergenic 35.0%
CTCAAGAAGAACATAGCTAT+GGG - chr8.2:1726952-1726971 MS.gene68944:CDS 35.0%
GATTTGAGCAAGCTATACTT+TGG - chr8.2:1725639-1725658 MS.gene68944:intron 35.0%
GCTTTATACTACCTTGTGAT+TGG - chr8.2:1726259-1726278 MS.gene68944:intron 35.0%
GTATGCATTGCACAAACAAT+GGG + chr8.2:1726503-1726522 None:intergenic 35.0%
TCAATACAAGGACTCAATCA+TGG - chr8.2:1724657-1724676 MS.gene68944:CDS 35.0%
TCCATCTGTTTCACTCAAAA+TGG - chr8.2:1725294-1725313 MS.gene68944:intron 35.0%
TCTCAAGAAGAACATAGCTA+TGG - chr8.2:1726951-1726970 MS.gene68944:CDS 35.0%
TGTATGCATTGCACAAACAA+TGG + chr8.2:1726504-1726523 None:intergenic 35.0%
TTGTCAGATGTTGAAGAACT+GGG + chr8.2:1725614-1725633 None:intergenic 35.0%
TTTCACTAATGAAAAGGGAG+GGG - chr8.2:1724834-1724853 MS.gene68944:CDS 35.0%
TTTGAGCAAGCTATACTTTG+GGG - chr8.2:1725641-1725660 MS.gene68944:intron 35.0%
TTTGTCAGATGTTGAAGAAC+TGG + chr8.2:1725615-1725634 None:intergenic 35.0%
! CATAAAGAGCAGTCTTTTTC+AGG + chr8.2:1724579-1724598 None:intergenic 35.0%
! GAAATGAAGAGGTGCAAATA+GGG + chr8.2:1725170-1725189 None:intergenic 35.0%
! GTAGGCTTGTAGTATTTTGT+GGG + chr8.2:1727075-1727094 None:intergenic 35.0%
! GTTTTCACTAATGAAAAGGG+AGG - chr8.2:1724832-1724851 MS.gene68944:CDS 35.0%
! TCATATTGAGGAGCATATGA+AGG - chr8.2:1724942-1724961 MS.gene68944:CDS 35.0%
! TCTTATTGTCTTTGGAAGCA+GGG - chr8.2:1725576-1725595 MS.gene68944:intron 35.0%
! TGAAATGAAGAGGTGCAAAT+AGG + chr8.2:1725171-1725190 None:intergenic 35.0%
! TGTAGGCTTGTAGTATTTTG+TGG + chr8.2:1727076-1727095 None:intergenic 35.0%
! TGTTGGAAAGTTGGTTACAA+TGG - chr8.2:1726380-1726399 MS.gene68944:intron 35.0%
! TTCTTATTGTCTTTGGAAGC+AGG - chr8.2:1725575-1725594 MS.gene68944:intron 35.0%
!! ATTTTGAGTGAAACAGATGG+AGG + chr8.2:1725295-1725314 None:intergenic 35.0%
!!! TTCCTTTTTTTGTGTGTGTG+TGG - chr8.2:1725722-1725741 MS.gene68944:intron 35.0%
AAATCTGGATTGCACAAAGC+AGG - chr8.2:1726982-1727001 MS.gene68944:CDS 40.0%
AACAGCCTTCTTATCTCCTT+TGG + chr8.2:1724527-1724546 None:intergenic 40.0%
ACAGCACATTACACCAATTG+AGG - chr8.2:1726720-1726739 MS.gene68944:CDS 40.0%
ACCAAAAGAGACACAGGTTA+GGG + chr8.2:1725398-1725417 None:intergenic 40.0%
ACTCAAAAGCAGCAAGAGAT+AGG + chr8.2:1725134-1725153 None:intergenic 40.0%
AGTGAGATTCAAGATGAAGG+AGG - chr8.2:1726886-1726905 MS.gene68944:CDS 40.0%
ATCCGTGACCTTAGTAATGA+CGG + chr8.2:1724872-1724891 None:intergenic 40.0%
ATGTGTGGTTTAAGCCTCAA+GGG - chr8.2:1724730-1724749 MS.gene68944:CDS 40.0%
ATTCGAGGAAAAGCGAATGA+AGG - chr8.2:1727024-1727043 MS.gene68944:CDS 40.0%
CAAATCTTTATCTCTGCACC+CGG + chr8.2:1724920-1724939 None:intergenic 40.0%
CACAGTGAGATTCAAGATGA+AGG - chr8.2:1726883-1726902 MS.gene68944:CDS 40.0%
CACGGATCATCACATTTACT+TGG - chr8.2:1724885-1724904 MS.gene68944:CDS 40.0%
CAGCAATGACTAACTTCTCA+AGG + chr8.2:1724774-1724793 None:intergenic 40.0%
CATTGATGTTCGTTACAGTG+AGG + chr8.2:1725549-1725568 None:intergenic 40.0%
CGATGATTCCGTCATTACTA+AGG - chr8.2:1724861-1724880 MS.gene68944:CDS 40.0%
GAAGGGAAAGTAAGATTGAC+AGG - chr8.2:1726634-1726653 MS.gene68944:CDS 40.0%
GAGCATGCCTATTCAATACA+AGG - chr8.2:1724645-1724664 MS.gene68944:CDS 40.0%
GAGGCTTAAACCACACATAT+GGG + chr8.2:1724728-1724747 None:intergenic 40.0%
GCTATGGGATATGTCAAATC+TGG - chr8.2:1726967-1726986 MS.gene68944:CDS 40.0%
GCTATGTTCTTCTTGAGACA+AGG + chr8.2:1726949-1726968 None:intergenic 40.0%
TATGACTTCCATGTTGCTCA+TGG - chr8.2:1724595-1724614 MS.gene68944:CDS 40.0%
TATGTGTGGTTTAAGCCTCA+AGG - chr8.2:1724729-1724748 MS.gene68944:CDS 40.0%
TGAGGCTTAAACCACACATA+TGG + chr8.2:1724729-1724748 None:intergenic 40.0%
TGTCAGATGTTGAAGAACTG+GGG + chr8.2:1725613-1725632 None:intergenic 40.0%
TTCCGTCATTACTAAGGTCA+CGG - chr8.2:1724867-1724886 MS.gene68944:CDS 40.0%
TTTACTTGGTTGTGAATGCC+GGG - chr8.2:1724899-1724918 MS.gene68944:CDS 40.0%
TTTGATGTTGCCCATATGTG+TGG - chr8.2:1724715-1724734 MS.gene68944:CDS 40.0%
! AAACAGCATCTTTTCCCTTG+AGG + chr8.2:1724747-1724766 None:intergenic 40.0%
!! GCCATTTTGAGTGAAACAGA+TGG + chr8.2:1725298-1725317 None:intergenic 40.0%
!! TAACAGAGGTATTGGAGAGT+TGG + chr8.2:1726344-1726363 None:intergenic 40.0%
AACATTGGTGAAGTCACCAG+TGG - chr8.2:1726913-1726932 MS.gene68944:CDS 45.0%
AATGAAACCGACACGCCTTA+TGG + chr8.2:1726839-1726858 None:intergenic 45.0%
AATTGAGGCAGGACTGACAT+GGG - chr8.2:1726735-1726754 MS.gene68944:CDS 45.0%
AGATCTACTGCATGCTCTGA+AGG + chr8.2:1726589-1726608 None:intergenic 45.0%
AGCCATTGATGTCCAACACA+CGG + chr8.2:1725671-1725690 None:intergenic 45.0%
AGTGCTTTCTCACACGAACA+GGG - chr8.2:1725694-1725713 MS.gene68944:intron 45.0%
ATCTCACTGTGACTTCTAGC+AGG + chr8.2:1726874-1726893 None:intergenic 45.0%
ATCTTCTCCAGTGTACCTGA+AGG + chr8.2:1726548-1726567 None:intergenic 45.0%
ATCTTGAAACAGCTCGCAGA+TGG - chr8.2:1726808-1726827 MS.gene68944:CDS 45.0%
CACATTACACCAATTGAGGC+AGG - chr8.2:1726724-1726743 MS.gene68944:CDS 45.0%
CACCAAAAGAGACACAGGTT+AGG + chr8.2:1725399-1725418 None:intergenic 45.0%
CGGGTGCAGAGATAAAGATT+TGG - chr8.2:1724918-1724937 MS.gene68944:CDS 45.0%
GAGAACTCTACTTGCTCTAC+AGG - chr8.2:1725011-1725030 MS.gene68944:intron 45.0%
GATGAAGGAGGCAACAACAT+TGG - chr8.2:1726898-1726917 MS.gene68944:CDS 45.0%
GTTCCATGTCATTGCCATAC+AGG + chr8.2:1726702-1726721 None:intergenic 45.0%
TCTCGCCAAAGGAGATAAGA+AGG - chr8.2:1724519-1724538 MS.gene68944:CDS 45.0%
TCTTACCACCATGAGCAACA+TGG + chr8.2:1724606-1724625 None:intergenic 45.0%
TCTTATCTCCTTTGGCGAGA+CGG + chr8.2:1724519-1724538 None:intergenic 45.0%
TCTTGAAACAGCTCGCAGAT+GGG - chr8.2:1726809-1726828 MS.gene68944:CDS 45.0%
TGTTGCTCATGGTGGTAAGA+TGG - chr8.2:1724606-1724625 MS.gene68944:CDS 45.0%
TTCAGGTACACTGGAGAAGA+TGG - chr8.2:1726547-1726566 MS.gene68944:CDS 45.0%
TTCCGTGTGTTGGACATCAA+TGG - chr8.2:1725666-1725685 MS.gene68944:intron 45.0%
! ACCCTAACCTGTGTCTCTTT+TGG - chr8.2:1725394-1725413 MS.gene68944:intron 45.0%
! AGAGCAGAAGGTGGTTTTCT+AGG - chr8.2:1726775-1726794 MS.gene68944:CDS 45.0%
! TGACATGGGCTATAGGTAAG+AGG - chr8.2:1726749-1726768 MS.gene68944:CDS 45.0%
!! ATGAAGGCATTCAAGGCCAA+AGG - chr8.2:1724958-1724977 MS.gene68944:CDS 45.0%
!! CGTGTCGGTTTCATTTCTTC+TGG - chr8.2:1726844-1726863 MS.gene68944:CDS 45.0%
!! GGAGCATATGAAGGCATTCA+AGG - chr8.2:1724951-1724970 MS.gene68944:CDS 45.0%
AAACCGACACGCCTTATGGA+AGG + chr8.2:1726835-1726854 None:intergenic 50.0%
AAGAGGAGAAGAGCAGAAGG+TGG - chr8.2:1726766-1726785 MS.gene68944:CDS 50.0%
AATGGGACCTTCAGGTACAC+TGG - chr8.2:1726538-1726557 MS.gene68944:intron 50.0%
ACAAGGACTGAATCCACCAC+TGG + chr8.2:1726932-1726951 None:intergenic 50.0%
ACAGGCACAATCCAGCTTCA+AGG + chr8.2:1726684-1726703 None:intergenic 50.0%
ACAGTCAATGTCCCAGTTCC+AGG + chr8.2:1724814-1724833 None:intergenic 50.0%
ATTGGTGAAGTCACCAGTGG+TGG - chr8.2:1726916-1726935 MS.gene68944:CDS 50.0%
CAATTGAGGCAGGACTGACA+TGG - chr8.2:1726734-1726753 MS.gene68944:CDS 50.0%
CACACTCTAATGGGACCTTC+AGG - chr8.2:1726530-1726549 MS.gene68944:intron 50.0%
CAGTGCTTTCTCACACGAAC+AGG - chr8.2:1725693-1725712 MS.gene68944:intron 50.0%
CATGTCAGTCCTGCCTCAAT+TGG + chr8.2:1726736-1726755 None:intergenic 50.0%
GAAGCTGGATTGTGCCTGTA+TGG - chr8.2:1726685-1726704 MS.gene68944:CDS 50.0%
GACTGCACCAAAAGAGACAC+AGG + chr8.2:1725404-1725423 None:intergenic 50.0%
GACTTCCATGTTGCTCATGG+TGG - chr8.2:1724598-1724617 MS.gene68944:CDS 50.0%
GATAGTCTACGCCTTGAAGC+TGG - chr8.2:1726670-1726689 MS.gene68944:CDS 50.0%
GCATGCAGTAGATCTTGCCA+AGG - chr8.2:1726594-1726613 MS.gene68944:CDS 50.0%
GCATGCTCCATCCAGCAAAT+GGG + chr8.2:1724633-1724652 None:intergenic 50.0%
GGTAAGAGGAGAAGAGCAGA+AGG - chr8.2:1726763-1726782 MS.gene68944:CDS 50.0%
GGTAAGATGGTCCCATTTGC+TGG - chr8.2:1724619-1724638 MS.gene68944:CDS 50.0%
GTGCCTGTATGGCAATGACA+TGG - chr8.2:1726696-1726715 MS.gene68944:CDS 50.0%
TCACTGTGACTTCTAGCAGG+TGG + chr8.2:1726871-1726890 None:intergenic 50.0%
TGCTCGCAGATGTTTCGCTA+CGG - chr8.2:1724546-1724565 MS.gene68944:CDS 50.0%
TTGAAGAACTGGGGCAGCAA+GGG + chr8.2:1725604-1725623 None:intergenic 50.0%
! AAGGCATTCAAGGCCAAAGG+TGG - chr8.2:1724961-1724980 MS.gene68944:CDS 50.0%
! AGATGGTCCCATTTGCTGGA+TGG - chr8.2:1724623-1724642 MS.gene68944:CDS 50.0%
! CAGGGCACCTTAGAATGTAC+TGG + chr8.2:1725373-1725392 None:intergenic 50.0%
AGAGACACAGGTTAGGGTGC+AGG + chr8.2:1725392-1725411 None:intergenic 55.0%
CGAGACGGCGAGTGATTGAT+TGG + chr8.2:1724504-1724523 None:intergenic 55.0%
CTGCACTTGCACCTGGAACT+GGG - chr8.2:1724800-1724819 MS.gene68944:CDS 55.0%
GAGACACAGGTTAGGGTGCA+GGG + chr8.2:1725391-1725410 None:intergenic 55.0%
GATGTTGCTGCACTTGCACC+TGG - chr8.2:1724793-1724812 MS.gene68944:CDS 55.0%
GGCATGCTCCATCCAGCAAA+TGG + chr8.2:1724634-1724653 None:intergenic 55.0%
GTTGAAGAACTGGGGCAGCA+AGG + chr8.2:1725605-1725624 None:intergenic 55.0%
TCGCAGATGGGCCTTCCATA+AGG - chr8.2:1726821-1726840 MS.gene68944:CDS 55.0%
TGAAGAACTGGGGCAGCAAG+GGG + chr8.2:1725603-1725622 None:intergenic 55.0%
! CTTTGGGGAGTTCCGTGTGT+TGG - chr8.2:1725656-1725675 MS.gene68944:intron 55.0%
! GCAGGACTGACATGGGCTAT+AGG - chr8.2:1726742-1726761 MS.gene68944:CDS 55.0%
AGAGGGGGCTTGTGGCAACT+TGG - chr8.2:1724478-1724497 MS.gene68944:CDS 60.0%
ATCACTCGCCGTCTCGCCAA+AGG - chr8.2:1724508-1724527 MS.gene68944:CDS 60.0%
CCAAAGGTGGCGATGTGTCG+TGG - chr8.2:1724974-1724993 MS.gene68944:CDS 60.0%
CCACGACACATCGCCACCTT+TGG + chr8.2:1724977-1724996 None:intergenic 60.0%
GCTGCACTTGCACCTGGAAC+TGG - chr8.2:1724799-1724818 MS.gene68944:CDS 60.0%
GGGCCTTCCATAAGGCGTGT+CGG - chr8.2:1726829-1726848 MS.gene68944:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 1724475 1727098 1724475 ID=MS.gene68944
chr8.2 mRNA 1724475 1727098 1724475 ID=MS.gene68944.t1;Parent=MS.gene68944
chr8.2 exon 1726541 1727098 1726541 ID=MS.gene68944.t1.exon1;Parent=MS.gene68944.t1
chr8.2 CDS 1726541 1727098 1726541 ID=cds.MS.gene68944.t1;Parent=MS.gene68944.t1
chr8.2 exon 1725858 1725976 1725858 ID=MS.gene68944.t1.exon2;Parent=MS.gene68944.t1
chr8.2 CDS 1725858 1725976 1725858 ID=cds.MS.gene68944.t1;Parent=MS.gene68944.t1
chr8.2 exon 1724475 1725021 1724475 ID=MS.gene68944.t1.exon3;Parent=MS.gene68944.t1
chr8.2 CDS 1724475 1725021 1724475 ID=cds.MS.gene68944.t1;Parent=MS.gene68944.t1
Gene Sequence

>MS.gene68944

ATGAGAGGGGGCTTGTGGCAACTTGGCCAATCAATCACTCGCCGTCTCGCCAAAGGAGATAAGAAGGCTGTTGCTCGCAGATGTTTCGCTACGGATTCTGACCTGAAAAAGACTGCTCTTTATGACTTCCATGTTGCTCATGGTGGTAAGATGGTCCCATTTGCTGGATGGAGCATGCCTATTCAATACAAGGACTCAATCATGGACTCAACCTTAAACTGTAGACAGAATGGTAGTCTTTTTGATGTTGCCCATATGTGTGGTTTAAGCCTCAAGGGAAAAGATGCTGTTTCTTTCCTTGAGAAGTTAGTCATTGCTGATGTTGCTGCACTTGCACCTGGAACTGGGACATTGACTGTTTTCACTAATGAAAAGGGAGGGGCTATCGATGATTCCGTCATTACTAAGGTCACGGATCATCACATTTACTTGGTTGTGAATGCCGGGTGCAGAGATAAAGATTTGGCTCATATTGAGGAGCATATGAAGGCATTCAAGGCCAAAGGTGGCGATGTGTCGTGGCACATTCATGACGAGAGAACTCTACTTGCTCTACAGGTCATTTATTACTCTATTGTACATTAGCATCATGCAAGCAAAACACACACTTTCAACTTGTTTTTTTTTTTTATTTTTGTTTTGTTTGATATATAGTACCTATCTCTTGCTGCTTTTGAGTTTTCTCATCATTTCCCTATTTGCACCTCTTCATTTCAATTTTTAAGATCTATAGCATAGTGGAAATATTCTTTCAAGTGTATTATCCTTTTTAGGGAGTGTTTCAACTTTTTCTTCAATCTTTTTTCTTGTAAACTTTCCTCCATCTGTTTCACTCAAAATGGCTGTAATGTAATCTAGAGTCTAGACACTAAAGCATTGATTGTTAAGAGTTGATCCAGTACATTCTAAGGTGCCCTGCACCCTAACCTGTGTCTCTTTTGGTGCAGTCAGTGTTGTCAAATAGTGACTACAGCATAGTGAAATTTGAACAAATTGCTATTGTTCTGCGCTATGCTAATCAGTACGAAGTGTTGAAAATAGATTGAGGGTGTTTTAAACTAATGACTTGTACCTCACTGTAACGAACATCAATGAAGTTTTTCTTATTGTCTTTGGAAGCAGGGTCCCCTTGCTGCCCCAGTTCTTCAACATCTGACAAAAGATGATTTGAGCAAGCTATACTTTGGGGAGTTCCGTGTGTTGGACATCAATGGCTCACAGTGCTTTCTCACACGAACAGGGTATGCTTCCTTTTTTTGTGTGTGTGTGGTTTTCTTCTACCAAAGTAGCAGTTTATTCTTAGAAGTTCATCTGATTTACAGTTATGTTTCCTTAAATTCCTTGTTGTGTCAATTTGACTATCTTGTCTTTCCTATCACTGTAATTTTCTTTTGTTGATTAAATGATTTTAATTAGAGGTGTTCATGAATTGACCCAATCTGATTTAAATCACTAAACGTGACCTGACAAATCGAAAACCAAAAATGTGTTCATTTGATTTGATTTTTTGGGTTACATTTTGAAGTCTGATTTGGTCCAAATCAAACTGAACTTTTTAAACTCATAGAATTTGTTTTAACTTAGGTTGTTGTGATTTAAAACACAGATTAACAATAAACTGATTTTATTTATATTTTAAATCCAAATCTAAATTATAAAATGTGTATAAGTTATACACACACATGAAATCACAACAACCTGATATACTGTGCATTTCAATGTTTTATTTATCATCTGTTATAAAACAAATAAAGTTAAATAAAAAAGTTGATTCATTCCAAATCGCTTTATACTACCTTGTGATTGGATCGTAAATAAGGAAACTGAATGATGCAATTTTTTTTCTCTCTCAAAGGAAGACATAATCCAACTCTCCAATACCTCTGTTAGATATAGTTGGATATTTGTTGGAAAGTTGGTTACAATGGTTAGTATTAGTTGCAAGTTAGTTTAGTTTGGATCACTATGCTTATATTTTTTTTGTATGTTTGTGTTATTGAGTCATAGGAACACTTCATGTCTTATCCCATTGTTTGTGCAATGCATACATAACAACACACTCTAATGGGACCTTCAGGTACACTGGAGAAGATGGATTTGAGATCTCAGTTCCTTCAGAGCATGCAGTAGATCTTGCCAAGGCAATACTTGAAAAATCTGAAGGGAAAGTAAGATTGACAGGACTTGGTGCTAGAGATAGTCTACGCCTTGAAGCTGGATTGTGCCTGTATGGCAATGACATGGAACAGCACATTACACCAATTGAGGCAGGACTGACATGGGCTATAGGTAAGAGGAGAAGAGCAGAAGGTGGTTTTCTAGGAGCTGATGTTATCTTGAAACAGCTCGCAGATGGGCCTTCCATAAGGCGTGTCGGTTTCATTTCTTCTGGTCCACCTGCTAGAAGTCACAGTGAGATTCAAGATGAAGGAGGCAACAACATTGGTGAAGTCACCAGTGGTGGATTCAGTCCTTGTCTCAAGAAGAACATAGCTATGGGATATGTCAAATCTGGATTGCACAAAGCAGGTACCAAAGTTAAGATCATTATTCGAGGAAAAGCGAATGAAGGAGTTGTCACAAAGATGCCATTTGTACCCACAAAATACTACAAGCCTACATAA

Protein sequence

>MS.gene68944.t1

MRGGLWQLGQSITRRLAKGDKKAVARRCFATDSDLKKTALYDFHVAHGGKMVPFAGWSMPIQYKDSIMDSTLNCRQNGSLFDVAHMCGLSLKGKDAVSFLEKLVIADVAALAPGTGTLTVFTNEKGGAIDDSVITKVTDHHIYLVVNAGCRDKDLAHIEEHMKAFKAKGGDVSWHIHDERTLLALQGPLAAPVLQHLTKDDLSKLYFGEFRVLDINGSQCFLTRTGYTGEDGFEISVPSEHAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHITPIEAGLTWAIGKRRRAEGGFLGADVILKQLADGPSIRRVGFISSGPPARSHSEIQDEGGNNIGEVTSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIIIRGKANEGVVTKMPFVPTKYYKPT