Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92661.t1 | XP_013459230.1 | 96.8 | 279 | 9 | 0 | 2 | 280 | 113 | 391 | 1.80E-144 | 521.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92661.t1 | Q94CJ5 | 63.2 | 277 | 100 | 1 | 3 | 277 | 108 | 384 | 3.5e-96 | 352.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92661.t1 | A0A072UV54 | 96.8 | 279 | 9 | 0 | 2 | 280 | 113 | 391 | 1.3e-144 | 521.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049173 | MS.gene92661 | 0.817594 | 3.04E-52 | -1.69E-46 |
| MS.gene049217 | MS.gene92661 | 0.836156 | 1.10E-56 | -1.69E-46 |
| MS.gene049222 | MS.gene92661 | 0.802384 | 5.76E-49 | -1.69E-46 |
| MS.gene049285 | MS.gene92661 | 0.808928 | 2.43E-50 | -1.69E-46 |
| MS.gene049351 | MS.gene92661 | 0.813957 | 1.97E-51 | -1.69E-46 |
| MS.gene049369 | MS.gene92661 | 0.810499 | 1.12E-50 | -1.69E-46 |
| MS.gene049427 | MS.gene92661 | 0.843428 | 1.41E-58 | -1.69E-46 |
| MS.gene049491 | MS.gene92661 | 0.828432 | 9.02E-55 | -1.69E-46 |
| MS.gene049609 | MS.gene92661 | 0.809846 | 1.55E-50 | -1.69E-46 |
| MS.gene049614 | MS.gene92661 | 0.854568 | 1.13E-61 | -1.69E-46 |
| MS.gene049661 | MS.gene92661 | 0.838939 | 2.13E-57 | -1.69E-46 |
| MS.gene049662 | MS.gene92661 | 0.840331 | 9.27E-58 | -1.69E-46 |
| MS.gene049760 | MS.gene92661 | 0.814586 | 1.43E-51 | -1.69E-46 |
| MS.gene049805 | MS.gene92661 | 0.802374 | 5.78E-49 | -1.69E-46 |
| MS.gene049828 | MS.gene92661 | 0.833016 | 6.79E-56 | -1.69E-46 |
| MS.gene050076 | MS.gene92661 | 0.851244 | 1.01E-60 | -1.69E-46 |
| MS.gene050163 | MS.gene92661 | 0.82812 | 1.07E-54 | -1.69E-46 |
| MS.gene050165 | MS.gene92661 | 0.819364 | 1.21E-52 | -1.69E-46 |
| MS.gene050301 | MS.gene92661 | 0.816166 | 6.36E-52 | -1.69E-46 |
| MS.gene050333 | MS.gene92661 | 0.825916 | 3.61E-54 | -1.69E-46 |
| MS.gene050397 | MS.gene92661 | 0.802582 | 5.24E-49 | -1.69E-46 |
| MS.gene050404 | MS.gene92661 | 0.801049 | 1.08E-48 | -1.69E-46 |
| MS.gene050432 | MS.gene92661 | 0.863958 | 1.72E-64 | -1.69E-46 |
| MS.gene050538 | MS.gene92661 | 0.80001 | 1.76E-48 | -1.69E-46 |
| MS.gene05053 | MS.gene92661 | 0.824539 | 7.64E-54 | -1.69E-46 |
| MS.gene050675 | MS.gene92661 | 0.803409 | 3.53E-49 | -1.69E-46 |
| MS.gene050767 | MS.gene92661 | 0.893445 | 6.25E-75 | -1.69E-46 |
| MS.gene050770 | MS.gene92661 | 0.897092 | 1.97E-76 | -1.69E-46 |
| MS.gene050772 | MS.gene92661 | 0.833708 | 4.57E-56 | -1.69E-46 |
| MS.gene05101 | MS.gene92661 | 0.843774 | 1.14E-58 | -1.69E-46 |
| MS.gene05105 | MS.gene92661 | 0.852704 | 3.88E-61 | -1.69E-46 |
| MS.gene051228 | MS.gene92661 | 0.886135 | 4.45E-72 | -1.69E-46 |
| MS.gene051387 | MS.gene92661 | 0.800391 | 1.47E-48 | -1.69E-46 |
| MS.gene051434 | MS.gene92661 | 0.82775 | 1.32E-54 | -1.69E-46 |
| MS.gene051471 | MS.gene92661 | 0.820743 | 5.84E-53 | -1.69E-46 |
| MS.gene051617 | MS.gene92661 | 0.846242 | 2.46E-59 | -1.69E-46 |
| MS.gene051666 | MS.gene92661 | 0.810481 | 1.13E-50 | -1.69E-46 |
| MS.gene051810 | MS.gene92661 | 0.859936 | 2.93E-63 | -1.69E-46 |
| MS.gene051858 | MS.gene92661 | 0.837135 | 6.21E-57 | -1.69E-46 |
| MS.gene051949 | MS.gene92661 | 0.817866 | 2.64E-52 | -1.69E-46 |
| MS.gene052078 | MS.gene92661 | 0.842577 | 2.38E-58 | -1.69E-46 |
| MS.gene052188 | MS.gene92661 | 0.836508 | 8.98E-57 | -1.69E-46 |
| MS.gene052271 | MS.gene92661 | 0.866609 | 2.52E-65 | -1.69E-46 |
| MS.gene052290 | MS.gene92661 | 0.905305 | 4.94E-80 | -1.69E-46 |
| MS.gene052293 | MS.gene92661 | 0.826427 | 2.73E-54 | -1.69E-46 |
| MS.gene052310 | MS.gene92661 | 0.854388 | 1.27E-61 | -1.69E-46 |
| MS.gene052326 | MS.gene92661 | 0.83555 | 1.57E-56 | -1.69E-46 |
| MS.gene052340 | MS.gene92661 | 0.80907 | 2.27E-50 | -1.69E-46 |
| MS.gene052379 | MS.gene92661 | 0.886871 | 2.35E-72 | -1.69E-46 |
| MS.gene052421 | MS.gene92661 | 0.803749 | 3.00E-49 | -1.69E-46 |
| MS.gene052484 | MS.gene92661 | 0.840982 | 6.26E-58 | -1.69E-46 |
| MS.gene052485 | MS.gene92661 | 0.804919 | 1.71E-49 | -1.69E-46 |
| MS.gene052870 | MS.gene92661 | 0.835536 | 1.58E-56 | -1.69E-46 |
| MS.gene052872 | MS.gene92661 | 0.823261 | 1.52E-53 | -1.69E-46 |
| MS.gene053009 | MS.gene92661 | 0.88557 | 7.25E-72 | -1.69E-46 |
| MS.gene053103 | MS.gene92661 | 0.836115 | 1.13E-56 | -1.69E-46 |
| MS.gene053104 | MS.gene92661 | 0.852303 | 5.04E-61 | -1.69E-46 |
| MS.gene053207 | MS.gene92661 | 0.826893 | 2.11E-54 | -1.69E-46 |
| MS.gene053209 | MS.gene92661 | 0.871485 | 6.59E-67 | -1.69E-46 |
| MS.gene053213 | MS.gene92661 | 0.811718 | 6.09E-51 | -1.69E-46 |
| MS.gene053286 | MS.gene92661 | 0.801826 | 7.50E-49 | -1.69E-46 |
| MS.gene053322 | MS.gene92661 | 0.877895 | 4.35E-69 | -1.69E-46 |
| MS.gene053384 | MS.gene92661 | 0.838878 | 2.21E-57 | -1.69E-46 |
| MS.gene053557 | MS.gene92661 | 0.800685 | 1.28E-48 | -1.69E-46 |
| MS.gene053632 | MS.gene92661 | 0.830574 | 2.72E-55 | -1.69E-46 |
| MS.gene053916 | MS.gene92661 | 0.802972 | 4.35E-49 | -1.69E-46 |
| MS.gene054123 | MS.gene92661 | 0.809008 | 2.34E-50 | -1.69E-46 |
| MS.gene054376 | MS.gene92661 | 0.879717 | 9.92E-70 | -1.69E-46 |
| MS.gene054543 | MS.gene92661 | 0.813393 | 2.62E-51 | -1.69E-46 |
| MS.gene054600 | MS.gene92661 | 0.809791 | 1.59E-50 | -1.69E-46 |
| MS.gene054642 | MS.gene92661 | 0.843035 | 1.79E-58 | -1.69E-46 |
| MS.gene054802 | MS.gene92661 | 0.845967 | 2.92E-59 | -1.69E-46 |
| MS.gene054803 | MS.gene92661 | 0.85134 | 9.46E-61 | -1.69E-46 |
| MS.gene054804 | MS.gene92661 | 0.850993 | 1.19E-60 | -1.69E-46 |
| MS.gene05505 | MS.gene92661 | 0.83538 | 1.74E-56 | -1.69E-46 |
| MS.gene055116 | MS.gene92661 | 0.802658 | 5.05E-49 | -1.69E-46 |
| MS.gene055206 | MS.gene92661 | 0.832121 | 1.13E-55 | -1.69E-46 |
| MS.gene055212 | MS.gene92661 | 0.806529 | 7.87E-50 | -1.69E-46 |
| MS.gene055254 | MS.gene92661 | 0.8876 | 1.24E-72 | -1.69E-46 |
| MS.gene055277 | MS.gene92661 | 0.850438 | 1.70E-60 | -1.69E-46 |
| MS.gene055390 | MS.gene92661 | 0.800065 | 1.72E-48 | -1.69E-46 |
| MS.gene055397 | MS.gene92661 | 0.881375 | 2.53E-70 | -1.69E-46 |
| MS.gene055412 | MS.gene92661 | 0.838383 | 2.97E-57 | -1.69E-46 |
| MS.gene055499 | MS.gene92661 | 0.886261 | 3.99E-72 | -1.69E-46 |
| MS.gene055636 | MS.gene92661 | 0.832789 | 7.73E-56 | -1.69E-46 |
| MS.gene055638 | MS.gene92661 | 0.825282 | 5.10E-54 | -1.69E-46 |
| MS.gene055647 | MS.gene92661 | 0.84095 | 6.39E-58 | -1.69E-46 |
| MS.gene055722 | MS.gene92661 | 0.832647 | 8.39E-56 | -1.69E-46 |
| MS.gene055896 | MS.gene92661 | 0.806809 | 6.87E-50 | -1.69E-46 |
| MS.gene05592 | MS.gene92661 | 0.881268 | 2.76E-70 | -1.69E-46 |
| MS.gene056083 | MS.gene92661 | 0.812969 | 3.24E-51 | -1.69E-46 |
| MS.gene056314 | MS.gene92661 | 0.805563 | 1.26E-49 | -1.69E-46 |
| MS.gene056374 | MS.gene92661 | 0.801709 | 7.92E-49 | -1.69E-46 |
| MS.gene056410 | MS.gene92661 | 0.859647 | 3.58E-63 | -1.69E-46 |
| MS.gene056449 | MS.gene92661 | 0.821315 | 4.31E-53 | -1.69E-46 |
| MS.gene056609 | MS.gene92661 | 0.89115 | 5.16E-74 | -1.69E-46 |
| MS.gene056611 | MS.gene92661 | 0.813749 | 2.19E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene92661 | 0.812828 | 3.48E-51 | -1.69E-46 |
| MS.gene056659 | MS.gene92661 | 0.804845 | 1.78E-49 | -1.69E-46 |
| MS.gene056719 | MS.gene92661 | 0.816231 | 6.15E-52 | -1.69E-46 |
| MS.gene056796 | MS.gene92661 | 0.82048 | 6.71E-53 | -1.69E-46 |
| MS.gene056897 | MS.gene92661 | 0.853497 | 2.30E-61 | -1.69E-46 |
| MS.gene056903 | MS.gene92661 | 0.836769 | 7.71E-57 | -1.69E-46 |
| MS.gene056947 | MS.gene92661 | 0.811232 | 7.76E-51 | -1.69E-46 |
| MS.gene057011 | MS.gene92661 | 0.831859 | 1.31E-55 | -1.69E-46 |
| MS.gene057076 | MS.gene92661 | 0.810975 | 8.82E-51 | -1.69E-46 |
| MS.gene057123 | MS.gene92661 | 0.811304 | 7.49E-51 | -1.69E-46 |
| MS.gene057129 | MS.gene92661 | 0.889325 | 2.68E-73 | -1.69E-46 |
| MS.gene057146 | MS.gene92661 | 0.827709 | 1.35E-54 | -1.69E-46 |
| MS.gene057246 | MS.gene92661 | 0.81492 | 1.20E-51 | -1.69E-46 |
| MS.gene057295 | MS.gene92661 | 0.803581 | 3.26E-49 | -1.69E-46 |
| MS.gene057331 | MS.gene92661 | 0.836194 | 1.08E-56 | -1.69E-46 |
| MS.gene05733 | MS.gene92661 | 0.801632 | 8.22E-49 | -1.69E-46 |
| MS.gene05735 | MS.gene92661 | 0.836294 | 1.02E-56 | -1.69E-46 |
| MS.gene057416 | MS.gene92661 | 0.827537 | 1.48E-54 | -1.69E-46 |
| MS.gene057926 | MS.gene92661 | 0.804493 | 2.10E-49 | -1.69E-46 |
| MS.gene058082 | MS.gene92661 | 0.868704 | 5.36E-66 | -1.69E-46 |
| MS.gene058130 | MS.gene92661 | 0.808569 | 2.90E-50 | -1.69E-46 |
| MS.gene058233 | MS.gene92661 | 0.815612 | 8.46E-52 | -1.69E-46 |
| MS.gene058293 | MS.gene92661 | 0.8463 | 2.37E-59 | -1.69E-46 |
| MS.gene058323 | MS.gene92661 | 0.817294 | 3.55E-52 | -1.69E-46 |
| MS.gene058365 | MS.gene92661 | 0.833772 | 4.40E-56 | -1.69E-46 |
| MS.gene058419 | MS.gene92661 | 0.805661 | 1.20E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene92661 | 0.859608 | 3.68E-63 | -1.69E-46 |
| MS.gene058723 | MS.gene92661 | 0.850067 | 2.16E-60 | -1.69E-46 |
| MS.gene058748 | MS.gene92661 | 0.8378 | 4.20E-57 | -1.69E-46 |
| MS.gene058773 | MS.gene92661 | 0.82547 | 4.61E-54 | -1.69E-46 |
| MS.gene058787 | MS.gene92661 | 0.826066 | 3.33E-54 | -1.69E-46 |
| MS.gene059029 | MS.gene92661 | 0.873973 | 9.70E-68 | -1.69E-46 |
| MS.gene05913 | MS.gene92661 | 0.808211 | 3.46E-50 | -1.69E-46 |
| MS.gene059326 | MS.gene92661 | 0.803489 | 3.40E-49 | -1.69E-46 |
| MS.gene05934 | MS.gene92661 | 0.822128 | 2.80E-53 | -1.69E-46 |
| MS.gene059536 | MS.gene92661 | 0.848628 | 5.43E-60 | -1.69E-46 |
| MS.gene059597 | MS.gene92661 | 0.809603 | 1.74E-50 | -1.69E-46 |
| MS.gene05959 | MS.gene92661 | 0.814906 | 1.21E-51 | -1.69E-46 |
| MS.gene059676 | MS.gene92661 | 0.856818 | 2.49E-62 | -1.69E-46 |
| MS.gene059677 | MS.gene92661 | 0.811627 | 6.37E-51 | -1.69E-46 |
| MS.gene059688 | MS.gene92661 | 0.85511 | 7.86E-62 | -1.69E-46 |
| MS.gene059692 | MS.gene92661 | 0.873791 | 1.12E-67 | -1.69E-46 |
| MS.gene059695 | MS.gene92661 | 0.869107 | 3.97E-66 | -1.69E-46 |
| MS.gene059708 | MS.gene92661 | 0.839314 | 1.71E-57 | -1.69E-46 |
| MS.gene059711 | MS.gene92661 | 0.851688 | 7.54E-61 | -1.69E-46 |
| MS.gene059718 | MS.gene92661 | 0.808012 | 3.82E-50 | -1.69E-46 |
| MS.gene059858 | MS.gene92661 | 0.842043 | 3.29E-58 | -1.69E-46 |
| MS.gene05986 | MS.gene92661 | 0.810821 | 9.52E-51 | -1.69E-46 |
| MS.gene059894 | MS.gene92661 | 0.833539 | 5.03E-56 | -1.69E-46 |
| MS.gene059902 | MS.gene92661 | 0.834773 | 2.47E-56 | -1.69E-46 |
| MS.gene059960 | MS.gene92661 | 0.894292 | 2.83E-75 | -1.69E-46 |
| MS.gene059974 | MS.gene92661 | 0.841916 | 3.56E-58 | -1.69E-46 |
| MS.gene060005 | MS.gene92661 | 0.810103 | 1.36E-50 | -1.69E-46 |
| MS.gene06037 | MS.gene92661 | 0.803814 | 2.91E-49 | -1.69E-46 |
| MS.gene060804 | MS.gene92661 | 0.868682 | 5.45E-66 | -1.69E-46 |
| MS.gene060818 | MS.gene92661 | 0.866236 | 3.31E-65 | -1.69E-46 |
| MS.gene06092 | MS.gene92661 | 0.803394 | 3.56E-49 | -1.69E-46 |
| MS.gene061041 | MS.gene92661 | 0.85234 | 4.92E-61 | -1.69E-46 |
| MS.gene061049 | MS.gene92661 | 0.808874 | 2.50E-50 | -1.69E-46 |
| MS.gene061051 | MS.gene92661 | -0.835123 | 2.02E-56 | -1.69E-46 |
| MS.gene061200 | MS.gene92661 | 0.883291 | 5.08E-71 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92661.t1 | MTR_3g033620 | 96.786 | 280 | 9 | 0 | 1 | 280 | 112 | 391 | 0.0 | 549 |
| MS.gene92661.t1 | MTR_0013s0150 | 75.089 | 281 | 68 | 1 | 1 | 279 | 100 | 380 | 9.74e-158 | 444 |
| MS.gene92661.t1 | MTR_4g077000 | 64.748 | 278 | 96 | 1 | 1 | 276 | 111 | 388 | 6.93e-134 | 384 |
| MS.gene92661.t1 | MTR_3g071970 | 35.417 | 288 | 167 | 6 | 3 | 276 | 434 | 716 | 7.71e-51 | 178 |
| MS.gene92661.t1 | MTR_2g084605 | 26.855 | 283 | 194 | 5 | 3 | 276 | 114 | 392 | 7.59e-30 | 116 |
| MS.gene92661.t1 | MTR_7g064130 | 29.130 | 230 | 154 | 5 | 53 | 276 | 222 | 448 | 3.16e-25 | 104 |
| MS.gene92661.t1 | MTR_7g074090 | 28.509 | 228 | 148 | 5 | 52 | 277 | 94 | 308 | 4.85e-23 | 96.7 |
| MS.gene92661.t1 | MTR_7g074090 | 28.509 | 228 | 148 | 5 | 52 | 277 | 94 | 308 | 1.19e-22 | 96.3 |
| MS.gene92661.t1 | MTR_7g074090 | 28.509 | 228 | 148 | 5 | 52 | 277 | 112 | 326 | 1.92e-22 | 95.9 |
| MS.gene92661.t1 | MTR_7g074070 | 28.947 | 228 | 147 | 5 | 52 | 277 | 105 | 319 | 1.57e-19 | 87.4 |
| MS.gene92661.t1 | MTR_2g081000 | 25.214 | 234 | 162 | 3 | 3 | 229 | 181 | 408 | 2.29e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92661.t1 | AT5G12470 | 63.441 | 279 | 100 | 1 | 1 | 277 | 106 | 384 | 1.78e-132 | 380 |
| MS.gene92661.t1 | AT3G56140 | 36.644 | 292 | 166 | 6 | 3 | 280 | 207 | 493 | 1.50e-54 | 184 |
| MS.gene92661.t1 | AT2G40400 | 36.986 | 292 | 165 | 6 | 3 | 280 | 417 | 703 | 1.10e-53 | 186 |
| MS.gene92661.t1 | AT2G40400 | 36.986 | 292 | 165 | 6 | 3 | 280 | 417 | 703 | 1.10e-53 | 186 |
| MS.gene92661.t1 | AT3G56140 | 36.301 | 292 | 167 | 6 | 3 | 280 | 426 | 712 | 2.46e-53 | 185 |
| MS.gene92661.t1 | AT3G56140 | 36.301 | 292 | 167 | 6 | 3 | 280 | 426 | 712 | 2.46e-53 | 185 |
| MS.gene92661.t1 | AT2G40400 | 36.555 | 238 | 133 | 5 | 3 | 226 | 417 | 650 | 1.75e-38 | 143 |
| MS.gene92661.t1 | AT5G22790 | 27.526 | 287 | 188 | 7 | 3 | 276 | 154 | 433 | 6.39e-27 | 108 |
| MS.gene92661.t1 | AT2G37860 | 28.159 | 277 | 176 | 8 | 14 | 276 | 165 | 432 | 9.73e-27 | 108 |
| MS.gene92661.t1 | AT2G37860 | 28.159 | 277 | 176 | 8 | 14 | 276 | 165 | 432 | 9.73e-27 | 108 |
| MS.gene92661.t1 | AT3G08630 | 29.362 | 235 | 143 | 6 | 52 | 279 | 104 | 322 | 3.94e-24 | 100 |
| MS.gene92661.t1 | AT3G08640 | 29.741 | 232 | 146 | 5 | 52 | 279 | 107 | 325 | 5.20e-24 | 99.8 |
| MS.gene92661.t1 | AT5G24690 | 26.250 | 240 | 152 | 6 | 3 | 229 | 180 | 407 | 8.47e-13 | 68.6 |
| MS.gene92661.t1 | AT2G37860 | 26.064 | 188 | 125 | 4 | 14 | 192 | 165 | 347 | 9.51e-13 | 67.8 |
| MS.gene92661.t1 | AT2G37860 | 26.064 | 188 | 125 | 4 | 14 | 192 | 165 | 347 | 9.51e-13 | 67.8 |
Find 65 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAAAATTTGGAGGGTTTA+AGG | 0.142353 | 3.1:-24061842 | MS.gene92661:CDS |
| TTCAGATGGTTGTTAAAATT+TGG | 0.178114 | 3.1:-24061853 | MS.gene92661:CDS |
| TTAGAACTGCTAATACTTAT+TGG | 0.179066 | 3.1:-24058892 | MS.gene92661:CDS |
| CTTATTGCCAAATTCTTCTA+TGG | 0.222326 | 3.1:-24059985 | MS.gene92661:CDS |
| AATTATTGAGCAACGGATTC+TGG | 0.230169 | 3.1:-24058966 | MS.gene92661:CDS |
| GTTAAGGCGGGGCGGGTTCC+TGG | 0.231023 | 3.1:-24061919 | MS.gene92661:CDS |
| GGCAATAAGTCCAGCACTTA+TGG | 0.234980 | 3.1:+24059999 | None:intergenic |
| AGGACATCCATAGAAGAATT+TGG | 0.239459 | 3.1:+24059978 | None:intergenic |
| TAGAACTGCTAATACTTATT+GGG | 0.243568 | 3.1:-24058891 | MS.gene92661:CDS |
| GGAGAGATTTCCGGCGGATT+TGG | 0.270043 | 3.1:-24061950 | MS.gene92661:CDS |
| TTGGTTAAGCCTTTATCTTC+TGG | 0.287578 | 3.1:+24058734 | None:intergenic |
| AGAAGAGGCAATGCTGGTTT+TGG | 0.302888 | 3.1:-24061992 | None:intergenic |
| GTTACTTTATCTTAGGTAAC+AGG | 0.304911 | 3.1:-24060087 | MS.gene92661:intron |
| CATCTCTTATGCAGCGTAAC+GGG | 0.313556 | 3.1:-24059647 | MS.gene92661:intron |
| GTTCTTAACTAAGCTTGTTA+TGG | 0.322891 | 3.1:-24061797 | MS.gene92661:CDS |
| TAGGTAACAGGCATTGTAAC+AGG | 0.333404 | 3.1:-24060075 | MS.gene92661:CDS |
| GGATTTGGCTGTTGCTGTTA+AGG | 0.361357 | 3.1:-24061935 | MS.gene92661:CDS |
| CAGTTAGTATAAGTTTGTTT+TGG | 0.370260 | 3.1:+24058930 | None:intergenic |
| GCTACACTGGTTGAGATTAC+AGG | 0.377130 | 3.1:+24059373 | None:intergenic |
| CAAAACAAACTTATACTAAC+TGG | 0.384571 | 3.1:-24058929 | MS.gene92661:CDS |
| ATCTCAACCAGTGTAGCATA+TGG | 0.402251 | 3.1:-24059367 | MS.gene92661:CDS |
| TGTTGCTGTTAAGGCGGGGC+GGG | 0.402815 | 3.1:-24061926 | MS.gene92661:CDS |
| TTGGCTGTTGCTGTTAAGGC+GGG | 0.411375 | 3.1:-24061931 | MS.gene92661:CDS |
| TAGGTCGATGGAGAGATTTC+CGG | 0.435176 | 3.1:-24061959 | MS.gene92661:CDS |
| TCTCGACAGGTGGCTTTGGC+AGG | 0.436623 | 3.1:-24059772 | MS.gene92661:intron |
| AGGGTTTAAGGAAAGGTTGT+TGG | 0.448786 | 3.1:-24061830 | MS.gene92661:CDS |
| CTTGTTTACCAGTGAAGCAC+TGG | 0.459884 | 3.1:+24059602 | None:intergenic |
| TACACACTTCTGCAGCGAAT+AGG | 0.484395 | 3.1:-24059742 | MS.gene92661:CDS |
| AGAAAATTTCACTAAAGAGA+TGG | 0.492493 | 3.1:-24061002 | MS.gene92661:CDS |
| AGTTGGAACCAGTGCTTCAC+TGG | 0.495392 | 3.1:-24059610 | MS.gene92661:intron |
| GGGGCAAAGCTGTTCGTAGT+TGG | 0.495711 | 3.1:-24059627 | MS.gene92661:CDS |
| GGTTGGAGTCCAGAAGATAA+AGG | 0.501111 | 3.1:-24058743 | MS.gene92661:CDS |
| AGATGGTTGTTAAAATTTGG+AGG | 0.512940 | 3.1:-24061850 | MS.gene92661:CDS |
| TTAAGAGAAACAGTGGGAGC+AGG | 0.517008 | 3.1:+24060033 | None:intergenic |
| CCTCCTCCTGCCATAAGTGC+TGG | 0.517428 | 3.1:-24060009 | MS.gene92661:CDS |
| GCAGCGAATAGGTGCTATAG+TGG | 0.527158 | 3.1:-24059731 | MS.gene92661:intron |
| TGCATTGATAAATGCACAGA+AGG | 0.533282 | 3.1:-24059428 | MS.gene92661:CDS |
| GATGGTTGTTAAAATTTGGA+GGG | 0.533288 | 3.1:-24061849 | MS.gene92661:CDS |
| TTTGGCTGTTGCTGTTAAGG+CGG | 0.535226 | 3.1:-24061932 | MS.gene92661:CDS |
| AATTTGGAGGGTTTAAGGAA+AGG | 0.537593 | 3.1:-24061837 | MS.gene92661:CDS |
| ATCAGGTATCAAGTACTAGC+AGG | 0.538106 | 3.1:-24058989 | MS.gene92661:intron |
| AATATATTTGTGTAGGTGGG+TGG | 0.541779 | 3.1:-24058779 | MS.gene92661:intron |
| TCTCAACCAGTGTAGCATAT+GGG | 0.543058 | 3.1:-24059366 | MS.gene92661:CDS |
| GGCAGAGGCTGGTAGGTCGA+TGG | 0.544016 | 3.1:-24061971 | MS.gene92661:CDS |
| TGGTAGTAGTTAGCAACCTC+AGG | 0.544386 | 3.1:-24059336 | MS.gene92661:intron |
| GGGTTCCTGGTTCGATAGTG+AGG | 0.546193 | 3.1:-24061906 | MS.gene92661:CDS |
| AGGCAGCTGCAGAGTTGGAG+CGG | 0.551037 | 3.1:-24061030 | MS.gene92661:CDS |
| AGAACTGCTAATACTTATTG+GGG | 0.552784 | 3.1:-24058890 | MS.gene92661:CDS |
| GTAAATCCCATATGCTACAC+TGG | 0.555578 | 3.1:+24059360 | None:intergenic |
| CCAGCACTTATGGCAGGAGG+AGG | 0.555670 | 3.1:+24060009 | None:intergenic |
| CCATCTCTTATGCAGCGTAA+CGG | 0.578736 | 3.1:-24059648 | MS.gene92661:intron |
| CTGTTGCTGTTAAGGCGGGG+CGG | 0.583576 | 3.1:-24061927 | MS.gene92661:CDS |
| ATAAGTCCAGCACTTATGGC+AGG | 0.585862 | 3.1:+24060003 | None:intergenic |
| AGGAGGTTTAAGAGAAACAG+TGG | 0.589294 | 3.1:+24060026 | None:intergenic |
| AACCTCCTCACTATCGAACC+AGG | 0.592357 | 3.1:+24061901 | None:intergenic |
| TAGCAGGAATTATTGAGCAA+CGG | 0.592464 | 3.1:-24058973 | MS.gene92661:CDS |
| ATCTCTTATGCAGCGTAACG+GGG | 0.596886 | 3.1:-24059646 | MS.gene92661:intron |
| TTCCTGGTTCGATAGTGAGG+AGG | 0.603087 | 3.1:-24061903 | MS.gene92661:CDS |
| ACAGCAACAGCCAAATCCGC+CGG | 0.617065 | 3.1:+24061940 | None:intergenic |
| TGTTGTTGTCATCTTCACCA+AGG | 0.629999 | 3.1:-24061770 | MS.gene92661:intron |
| TGTAGCATATGGGATTTACA+TGG | 0.636490 | 3.1:-24059356 | MS.gene92661:CDS |
| TGGCTGTTGCTGTTAAGGCG+GGG | 0.645154 | 3.1:-24061930 | MS.gene92661:CDS |
| GGAGGTTTAAGAGAAACAGT+GGG | 0.664978 | 3.1:+24060027 | None:intergenic |
| AGTCCAGCACTTATGGCAGG+AGG | 0.668560 | 3.1:+24060006 | None:intergenic |
| GTCGATGGAGAGATTTCCGG+CGG | 0.669889 | 3.1:-24061956 | MS.gene92661:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTCTTTTCATTTA+AGG | - | chr3.1:24061695-24061714 | MS.gene92661:intron | 10.0% |
| !! | AATTTAATAATTAGCATGAA+TGG | - | chr3.1:24060087-24060106 | MS.gene92661:intron | 15.0% |
| !! | ATTTAATAATTAGCATGAAT+GGG | - | chr3.1:24060088-24060107 | MS.gene92661:intron | 15.0% |
| !!! | ATTTTATACTGAAAATGAAA+AGG | + | chr3.1:24060812-24060831 | None:intergenic | 15.0% |
| !!! | TCAAATTGTTATTAATCATT+AGG | - | chr3.1:24059840-24059859 | MS.gene92661:intron | 15.0% |
| !!! | TCTATTTGACAATTTAATTT+TGG | + | chr3.1:24060222-24060241 | None:intergenic | 15.0% |
| !! | AAAGAATAAATGATGAAGAT+TGG | + | chr3.1:24060481-24060500 | None:intergenic | 20.0% |
| !! | AATACACTAAATTGTAACAA+TGG | + | chr3.1:24058983-24059002 | None:intergenic | 20.0% |
| !! | AGAAGAACATAATAACATTT+AGG | + | chr3.1:24061901-24061920 | None:intergenic | 20.0% |
| !! | TATAATATATTTGTGTAGGT+GGG | - | chr3.1:24061938-24061957 | MS.gene92661:CDS | 20.0% |
| !! | TTGGTATAATATATTTGTGT+AGG | - | chr3.1:24061934-24061953 | MS.gene92661:CDS | 20.0% |
| !!! | TAAGTTGTTTTTAGAATATG+AGG | - | chr3.1:24059128-24059147 | MS.gene92661:intron | 20.0% |
| !!! | TCACTCTTTTAAGTAAATAA+TGG | + | chr3.1:24059625-24059644 | None:intergenic | 20.0% |
| !!! | TTTGACAATTTAATTTTGGA+AGG | + | chr3.1:24060218-24060237 | None:intergenic | 20.0% |
| ! | AAACATATATGATCAGTTGT+TGG | - | chr3.1:24060912-24060931 | MS.gene92661:intron | 25.0% |
| ! | AAATTCATGGATGCTATAAT+TGG | + | chr3.1:24061221-24061240 | None:intergenic | 25.0% |
| ! | AACAACTGATCATATATGTT+TGG | + | chr3.1:24060913-24060932 | None:intergenic | 25.0% |
| ! | AAGGAAATAACTATTTGACT+TGG | + | chr3.1:24061035-24061054 | None:intergenic | 25.0% |
| ! | AAGTAACAAACTGAATAAGA+TGG | + | chr3.1:24060620-24060639 | None:intergenic | 25.0% |
| ! | AGAAAATTAGCCATATGTAA+TGG | - | chr3.1:24059650-24059669 | MS.gene92661:intron | 25.0% |
| ! | AGAAAATTTCACTAAAGAGA+TGG | - | chr3.1:24059718-24059737 | MS.gene92661:intron | 25.0% |
| ! | ATACAAACATTCACAAAAAG+AGG | + | chr3.1:24061187-24061206 | None:intergenic | 25.0% |
| ! | CAAAACAAACTTATACTAAC+TGG | - | chr3.1:24061791-24061810 | MS.gene92661:CDS | 25.0% |
| ! | CCAGTAATGTTATAAATTCA+TGG | + | chr3.1:24061234-24061253 | None:intergenic | 25.0% |
| ! | CCATGAATTTATAACATTAC+TGG | - | chr3.1:24061231-24061250 | MS.gene92661:intron | 25.0% |
| ! | CTGCAATGTAAAATAAAACT+GGG | - | chr3.1:24059468-24059487 | MS.gene92661:intron | 25.0% |
| ! | GTATAATATATTTGTGTAGG+TGG | - | chr3.1:24061937-24061956 | MS.gene92661:CDS | 25.0% |
| ! | TAAAATAAAACTGGGAATGA+GGG | - | chr3.1:24059476-24059495 | MS.gene92661:intron | 25.0% |
| ! | TAGAACTGCTAATACTTATT+GGG | - | chr3.1:24061829-24061848 | MS.gene92661:CDS | 25.0% |
| ! | TCTGCAATGTAAAATAAAAC+TGG | - | chr3.1:24059467-24059486 | MS.gene92661:intron | 25.0% |
| ! | TTAGAACTGCTAATACTTAT+TGG | - | chr3.1:24061828-24061847 | MS.gene92661:CDS | 25.0% |
| ! | TTATATCCTCAAAATTGTTG+TGG | - | chr3.1:24061604-24061623 | MS.gene92661:intron | 25.0% |
| ! | TTATTGTGTTAAATCAAAGC+AGG | - | chr3.1:24059994-24060013 | MS.gene92661:CDS | 25.0% |
| ! | TTCAGATGGTTGTTAAAATT+TGG | - | chr3.1:24058867-24058886 | MS.gene92661:intron | 25.0% |
| ! | TTCTTGTGCATATACTTATT+CGG | - | chr3.1:24061468-24061487 | MS.gene92661:intron | 25.0% |
| !! | AGTTATTTCCTTATAAGTGA+AGG | - | chr3.1:24061043-24061062 | MS.gene92661:intron | 25.0% |
| !! | TAATTTGTAAAGGCAACAAA+AGG | + | chr3.1:24059353-24059372 | None:intergenic | 25.0% |
| !! | TTGGTTTCTTTTCTTGTAAA+CGG | + | chr3.1:24059514-24059533 | None:intergenic | 25.0% |
| !!! | CAGTTAGTATAAGTTTGTTT+TGG | + | chr3.1:24061793-24061812 | None:intergenic | 25.0% |
| !!! | TCAGTTTGTTACTTTATCTT+AGG | - | chr3.1:24060626-24060645 | MS.gene92661:intron | 25.0% |
| !!! | TGTTTTCTGCTAATTTGTAA+AGG | + | chr3.1:24059363-24059382 | None:intergenic | 25.0% |
| AAAACTCATCATGCCAAATA+AGG | + | chr3.1:24059545-24059564 | None:intergenic | 30.0% | |
| AAATTACTGAGAACTTGAAC+TGG | + | chr3.1:24060119-24060138 | None:intergenic | 30.0% | |
| AACACAATAAGCATCATTTG+CGG | + | chr3.1:24059984-24060003 | None:intergenic | 30.0% | |
| AACATCAGCTTAAAGTTTGT+AGG | - | chr3.1:24059379-24059398 | MS.gene92661:CDS | 30.0% | |
| AAGTTTGTAGGACTTCTAAT+TGG | - | chr3.1:24059391-24059410 | MS.gene92661:CDS | 30.0% | |
| ACCAACTCTGACATAAAAAT+TGG | + | chr3.1:24059246-24059265 | None:intergenic | 30.0% | |
| ACCTACTGTTCATGTAATTT+AGG | - | chr3.1:24060053-24060072 | MS.gene92661:CDS | 30.0% | |
| ACTAGAATAGAACTTGCATT+TGG | - | chr3.1:24059159-24059178 | MS.gene92661:intron | 30.0% | |
| AGAACTGCTAATACTTATTG+GGG | - | chr3.1:24061830-24061849 | MS.gene92661:CDS | 30.0% | |
| AGAGGTTAAAACAAAGCAAA+AGG | + | chr3.1:24061169-24061188 | None:intergenic | 30.0% | |
| AGATGGTTGTTAAAATTTGG+AGG | - | chr3.1:24058870-24058889 | MS.gene92661:intron | 30.0% | |
| AGATTCCAACTTTGTAACTT+TGG | + | chr3.1:24059576-24059595 | None:intergenic | 30.0% | |
| CTGATCATATATGTTTGGAT+CGG | + | chr3.1:24060908-24060927 | None:intergenic | 30.0% | |
| CTTATTGCCAAATTCTTCTA+TGG | - | chr3.1:24060735-24060754 | MS.gene92661:intron | 30.0% | |
| GACAAGATATCCATTACATA+TGG | + | chr3.1:24059663-24059682 | None:intergenic | 30.0% | |
| GATGGTTGTTAAAATTTGGA+GGG | - | chr3.1:24058871-24058890 | MS.gene92661:intron | 30.0% | |
| GTAAAATAAAACTGGGAATG+AGG | - | chr3.1:24059475-24059494 | MS.gene92661:intron | 30.0% | |
| GTGATTTATGAATATGTCGA+CGG | - | chr3.1:24059005-24059024 | MS.gene92661:intron | 30.0% | |
| GTTAAAATTTGGAGGGTTTA+AGG | - | chr3.1:24058878-24058897 | MS.gene92661:intron | 30.0% | |
| TAAATCAAAGCAGGAAACAA+GGG | - | chr3.1:24060003-24060022 | MS.gene92661:CDS | 30.0% | |
| TATGCAAAATGTACACTCTT+GGG | - | chr3.1:24059185-24059204 | MS.gene92661:intron | 30.0% | |
| TTAAATCAAAGCAGGAAACA+AGG | - | chr3.1:24060002-24060021 | MS.gene92661:CDS | 30.0% | |
| TTGATTGATTACTAACTGTC+TGG | + | chr3.1:24061445-24061464 | None:intergenic | 30.0% | |
| ! | AGTTCAAGTTCTCAGTAATT+TGG | - | chr3.1:24060118-24060137 | MS.gene92661:intron | 30.0% |
| ! | ATAATTAATCTTTTCCCGCT+AGG | + | chr3.1:24060401-24060420 | None:intergenic | 30.0% |
| ! | CTAATTGGCTTCATAGTAAT+AGG | - | chr3.1:24059406-24059425 | MS.gene92661:CDS | 30.0% |
| ! | GTTACTTTATCTTAGGTAAC+AGG | - | chr3.1:24060633-24060652 | MS.gene92661:intron | 30.0% |
| ! | GTTTTCTACATGAACATTTG+TGG | - | chr3.1:24059953-24059972 | MS.gene92661:intron | 30.0% |
| ! | TATACTTATTCGGACTTTTG+AGG | - | chr3.1:24061478-24061497 | MS.gene92661:intron | 30.0% |
| ! | TATTTGGCATGATGAGTTTT+AGG | - | chr3.1:24059545-24059564 | MS.gene92661:intron | 30.0% |
| ! | TCCAATTTTTATGTCAGAGT+TGG | - | chr3.1:24059242-24059261 | MS.gene92661:intron | 30.0% |
| ! | TGGTTTCTTTTCTTGTAAAC+GGG | + | chr3.1:24059513-24059532 | None:intergenic | 30.0% |
| !! | GTTCTTAACTAAGCTTGTTA+TGG | - | chr3.1:24058923-24058942 | MS.gene92661:CDS | 30.0% |
| !! | TAACAGGTTTTGTACTAGTT+TGG | - | chr3.1:24060661-24060680 | MS.gene92661:intron | 30.0% |
| !!! | TTAACCTGAAAAGCATTTTC+AGG | + | chr3.1:24060765-24060784 | None:intergenic | 30.0% |
| !!! | TTTCAATGCTTTTTTCAGGT+TGG | - | chr3.1:24061254-24061273 | MS.gene92661:intron | 30.0% |
| AAAGCTAAAATGCGACATCA+AGG | + | chr3.1:24060520-24060539 | None:intergenic | 35.0% | |
| AATATATTTGTGTAGGTGGG+TGG | - | chr3.1:24061941-24061960 | MS.gene92661:CDS | 35.0% | |
| AATTTGGAGGGTTTAAGGAA+AGG | - | chr3.1:24058883-24058902 | MS.gene92661:CDS | 35.0% | |
| ACGTCTTCAATATGAAGTGT+CGG | + | chr3.1:24061541-24061560 | None:intergenic | 35.0% | |
| AGGACATCCATAGAAGAATT+TGG | + | chr3.1:24060745-24060764 | None:intergenic | 35.0% | |
| ATTACATGAACAGTAGGTGA+AGG | + | chr3.1:24060051-24060070 | None:intergenic | 35.0% | |
| CTATGCAAAATGTACACTCT+TGG | - | chr3.1:24059184-24059203 | MS.gene92661:intron | 35.0% | |
| GAAGGAAAATAGAATACCTG+AGG | + | chr3.1:24061403-24061422 | None:intergenic | 35.0% | |
| GCCTAAATTACATGAACAGT+AGG | + | chr3.1:24060057-24060076 | None:intergenic | 35.0% | |
| GTAACAATGGAAACAAACCT+TGG | + | chr3.1:24058970-24058989 | None:intergenic | 35.0% | |
| GTTATGAATGTCGGCATTTA+AGG | + | chr3.1:24060367-24060386 | None:intergenic | 35.0% | |
| TAAAGGCAACAAAAGGAACT+TGG | + | chr3.1:24059346-24059365 | None:intergenic | 35.0% | |
| TAGCAGGAATTATTGAGCAA+CGG | - | chr3.1:24061747-24061766 | MS.gene92661:intron | 35.0% | |
| TCTTCTCAGTTCTCATGATT+TGG | - | chr3.1:24061915-24061934 | MS.gene92661:CDS | 35.0% | |
| TGTAGCATATGGGATTTACA+TGG | - | chr3.1:24061364-24061383 | MS.gene92661:intron | 35.0% | |
| TTCGACCAAAGTTACAAAGT+TGG | - | chr3.1:24059568-24059587 | MS.gene92661:intron | 35.0% | |
| ! | AAGGATTTGTTTGTGTGATC+AGG | - | chr3.1:24061714-24061733 | MS.gene92661:intron | 35.0% |
| ! | AATTATTGAGCAACGGATTC+TGG | - | chr3.1:24061754-24061773 | MS.gene92661:intron | 35.0% |
| ! | ATGTCCTGAAAATGCTTTTC+AGG | - | chr3.1:24060758-24060777 | MS.gene92661:intron | 35.0% |
| ! | CAACATCCACAACAATTTTG+AGG | + | chr3.1:24061613-24061632 | None:intergenic | 35.0% |
| ! | GGTTTCTTTTCTTGTAAACG+GGG | + | chr3.1:24059512-24059531 | None:intergenic | 35.0% |
| ! | TGAATTTTCGTTTTCTCGAC+AGG | - | chr3.1:24060935-24060954 | MS.gene92661:intron | 35.0% |
| ! | TGCATTGATAAATGCACAGA+AGG | - | chr3.1:24061292-24061311 | MS.gene92661:intron | 35.0% |
| ! | TGGATATCTTGTCTGTTTTC+AGG | - | chr3.1:24059670-24059689 | MS.gene92661:intron | 35.0% |
| !! | ACTCTGTAGTAGTTTGTTGA+AGG | + | chr3.1:24061421-24061440 | None:intergenic | 35.0% |
| !!! | CTGGTTTCAATGCTTTTTTC+AGG | - | chr3.1:24061250-24061269 | MS.gene92661:intron | 35.0% |
| !!! | GGATTTTGTTGTTGCTAATG+TGG | - | chr3.1:24059739-24059758 | MS.gene92661:CDS | 35.0% |
| !!! | TGCTTTTTTCAGGTTGGTAT+AGG | - | chr3.1:24061260-24061279 | MS.gene92661:intron | 35.0% |
| AAATGCCGACATTCATAACG+TGG | - | chr3.1:24060368-24060387 | MS.gene92661:intron | 40.0% | |
| AAGTTGGAATCTCTCTCTAC+AGG | - | chr3.1:24059584-24059603 | MS.gene92661:intron | 40.0% | |
| ACCAACGAGTCTACCTTATT+TGG | - | chr3.1:24059529-24059548 | MS.gene92661:intron | 40.0% | |
| AGAAAGATGTTGTTAGCCGA+GGG | + | chr3.1:24059450-24059469 | None:intergenic | 40.0% | |
| AGGAGGTTTAAGAGAAACAG+TGG | + | chr3.1:24060697-24060716 | None:intergenic | 40.0% | |
| AGGGTTTAAGGAAAGGTTGT+TGG | - | chr3.1:24058890-24058909 | MS.gene92661:CDS | 40.0% | |
| ATCAGGTATCAAGTACTAGC+AGG | - | chr3.1:24061731-24061750 | MS.gene92661:intron | 40.0% | |
| ATCTCAACCAGTGTAGCATA+TGG | - | chr3.1:24061353-24061372 | MS.gene92661:intron | 40.0% | |
| GGAGATGACCTTCACTTATA+AGG | + | chr3.1:24061054-24061073 | None:intergenic | 40.0% | |
| GGAGGTTTAAGAGAAACAGT+GGG | + | chr3.1:24060696-24060715 | None:intergenic | 40.0% | |
| GTAAATCCCATATGCTACAC+TGG | + | chr3.1:24061363-24061382 | None:intergenic | 40.0% | |
| TCAGATATTGACCACTAGCT+TGG | - | chr3.1:24059288-24059307 | MS.gene92661:intron | 40.0% | |
| TCTCAACCAGTGTAGCATAT+GGG | - | chr3.1:24061354-24061373 | MS.gene92661:intron | 40.0% | |
| TCTTGCCACGTTATGAATGT+CGG | + | chr3.1:24060376-24060395 | None:intergenic | 40.0% | |
| TGACGTATCAGTGTCATGTT+TGG | - | chr3.1:24061631-24061650 | MS.gene92661:intron | 40.0% | |
| TGCGACATCAAGGAGATTAT+AGG | + | chr3.1:24060510-24060529 | None:intergenic | 40.0% | |
| TGTTGTTGTCATCTTCACCA+AGG | - | chr3.1:24058950-24058969 | MS.gene92661:CDS | 40.0% | |
| TTCTTGCGTATGTCTATCGA+GGG | - | chr3.1:24059810-24059829 | MS.gene92661:intron | 40.0% | |
| TTTACCTCGATAGTTCAGCA+TGG | - | chr3.1:24060170-24060189 | MS.gene92661:intron | 40.0% | |
| TTTCTTGCGTATGTCTATCG+AGG | - | chr3.1:24059809-24059828 | MS.gene92661:intron | 40.0% | |
| ! | ATTTTCGTTTTCTCGACAGG+TGG | - | chr3.1:24060938-24060957 | MS.gene92661:intron | 40.0% |
| ! | TAGGTAACAGGCATTGTAAC+AGG | - | chr3.1:24060645-24060664 | MS.gene92661:intron | 40.0% |
| !! | AGGAGTCAGTTGTTTTCAGA+TGG | - | chr3.1:24058853-24058872 | MS.gene92661:intron | 40.0% |
| !! | CAAGGGCATATGCAATTTTC+AGG | - | chr3.1:24060020-24060039 | MS.gene92661:CDS | 40.0% |
| !! | CGACTAACTTTGAAATCCCT+CGG | - | chr3.1:24059431-24059450 | MS.gene92661:CDS | 40.0% |
| !! | TTGGAACCTTTGATGATGCT+TGG | + | chr3.1:24059327-24059346 | None:intergenic | 40.0% |
| !!! | AGTGAGGAGGTTTTTTGAGT+TGG | - | chr3.1:24058830-24058849 | MS.gene92661:intron | 40.0% |
| !!! | AGTTTGTTTTGGCGTAGCAA+TGG | + | chr3.1:24061782-24061801 | None:intergenic | 40.0% |
| AATTGGACACTGTCGCAAGT+CGG | + | chr3.1:24059229-24059248 | None:intergenic | 45.0% | |
| ATAAGTCCAGCACTTATGGC+AGG | + | chr3.1:24060720-24060739 | None:intergenic | 45.0% | |
| ATCTCTTATGCAGCGTAACG+GGG | - | chr3.1:24061074-24061093 | MS.gene92661:intron | 45.0% | |
| CAGAAAGATGTTGTTAGCCG+AGG | + | chr3.1:24059451-24059470 | None:intergenic | 45.0% | |
| CATCTCTTATGCAGCGTAAC+GGG | - | chr3.1:24061073-24061092 | MS.gene92661:intron | 45.0% | |
| CCATCTCTTATGCAGCGTAA+CGG | - | chr3.1:24061072-24061091 | MS.gene92661:intron | 45.0% | |
| CTTGTTTACCAGTGAAGCAC+TGG | + | chr3.1:24061121-24061140 | None:intergenic | 45.0% | |
| GAGCTCAATAACCAAGCTAG+TGG | + | chr3.1:24059302-24059321 | None:intergenic | 45.0% | |
| GCCAAATAAGGTAGACTCGT+TGG | + | chr3.1:24059533-24059552 | None:intergenic | 45.0% | |
| GCTCAACCAAGCATCATCAA+AGG | - | chr3.1:24059318-24059337 | MS.gene92661:intron | 45.0% | |
| GGCAATAAGTCCAGCACTTA+TGG | + | chr3.1:24060724-24060743 | None:intergenic | 45.0% | |
| GGTTGGAGTCCAGAAGATAA+AGG | - | chr3.1:24061977-24061996 | MS.gene92661:CDS | 45.0% | |
| GTAGCAACTGCTAACAGACT+TGG | - | chr3.1:24060339-24060358 | MS.gene92661:intron | 45.0% | |
| TAACGTGGCAAGAATCCTAG+CGG | - | chr3.1:24060383-24060402 | MS.gene92661:intron | 45.0% | |
| TACACACTTCTGCAGCGAAT+AGG | - | chr3.1:24060978-24060997 | MS.gene92661:intron | 45.0% | |
| TAGGTCGATGGAGAGATTTC+CGG | - | chr3.1:24058761-24058780 | MS.gene92661:CDS | 45.0% | |
| TGGTAGTAGTTAGCAACCTC+AGG | - | chr3.1:24061384-24061403 | MS.gene92661:intron | 45.0% | |
| TTAAGAGAAACAGTGGGAGC+AGG | + | chr3.1:24060690-24060709 | None:intergenic | 45.0% | |
| TTTCTTGTAAACGGGGTGTG+AGG | + | chr3.1:24059505-24059524 | None:intergenic | 45.0% | |
| ! | GCTACACTGGTTGAGATTAC+AGG | + | chr3.1:24061350-24061369 | None:intergenic | 45.0% |
| ! | GGATTTGGCTGTTGCTGTTA+AGG | - | chr3.1:24058785-24058804 | MS.gene92661:intron | 45.0% |
| ! | GGTGCTATAGTGGTATGTGT+TGG | - | chr3.1:24060999-24061018 | MS.gene92661:CDS | 45.0% |
| ! | GTGGATTTTGCTAGATGGGT+TGG | - | chr3.1:24061960-24061979 | MS.gene92661:CDS | 45.0% |
| ! | TTTGGCTGTTGCTGTTAAGG+CGG | - | chr3.1:24058788-24058807 | MS.gene92661:intron | 45.0% |
| !! | GTGGGTGGATTTTGCTAGAT+GGG | - | chr3.1:24061956-24061975 | MS.gene92661:CDS | 45.0% |
| !!! | GAGGAGGTTTTTTGAGTTGG+AGG | - | chr3.1:24058833-24058852 | MS.gene92661:intron | 45.0% |
| !!! | TATTCGGACTTTTGAGGCGT+AGG | - | chr3.1:24061484-24061503 | MS.gene92661:intron | 45.0% |
| AACCTCCTCACTATCGAACC+AGG | + | chr3.1:24058822-24058841 | None:intergenic | 50.0% | |
| AACGTGGCAAGAATCCTAGC+GGG | - | chr3.1:24060384-24060403 | MS.gene92661:intron | 50.0% | |
| AGTTGGAACCAGTGCTTCAC+TGG | - | chr3.1:24061110-24061129 | MS.gene92661:intron | 50.0% | |
| ATTGGACACTGTCGCAAGTC+GGG | + | chr3.1:24059228-24059247 | None:intergenic | 50.0% | |
| CCGTTACGCTGCATAAGAGA+TGG | + | chr3.1:24061075-24061094 | None:intergenic | 50.0% | |
| GATGCCATGCTGAACTATCG+AGG | + | chr3.1:24060177-24060196 | None:intergenic | 50.0% | |
| ! | GCAGCGAATAGGTGCTATAG+TGG | - | chr3.1:24060989-24061008 | MS.gene92661:CDS | 50.0% |
| ! | GTTTTCTCGACAGGTGGCTT+TGG | - | chr3.1:24060944-24060963 | MS.gene92661:intron | 50.0% |
| ! | TTCCTGGTTCGATAGTGAGG+AGG | - | chr3.1:24058817-24058836 | MS.gene92661:intron | 50.0% |
| ! | TTGGCTGTTGCTGTTAAGGC+GGG | - | chr3.1:24058789-24058808 | MS.gene92661:intron | 50.0% |
| !! | GGTGGGTGGATTTTGCTAGA+TGG | - | chr3.1:24061955-24061974 | MS.gene92661:CDS | 50.0% |
| !! | TTTTCAGGCAGCTGCAGAGT+TGG | - | chr3.1:24059685-24059704 | MS.gene92661:intron | 50.0% |
| ACAGCAACAGCCAAATCCGC+CGG | + | chr3.1:24058783-24058802 | None:intergenic | 55.0% | |
| AGTCCAGCACTTATGGCAGG+AGG | + | chr3.1:24060717-24060736 | None:intergenic | 55.0% | |
| GGGGCAAAGCTGTTCGTAGT+TGG | - | chr3.1:24061093-24061112 | MS.gene92661:intron | 55.0% | |
| GTCGATGGAGAGATTTCCGG+CGG | - | chr3.1:24058764-24058783 | MS.gene92661:CDS | 55.0% | |
| ! | GGAGAGATTTCCGGCGGATT+TGG | - | chr3.1:24058770-24058789 | MS.gene92661:intron | 55.0% |
| ! | GGGTTCCTGGTTCGATAGTG+AGG | - | chr3.1:24058814-24058833 | MS.gene92661:intron | 55.0% |
| ! | TGGCTGTTGCTGTTAAGGCG+GGG | - | chr3.1:24058790-24058809 | MS.gene92661:intron | 55.0% |
| !!! | ATGCTGGTTTTGGCAGAGGC+TGG | - | chr3.1:24058738-24058757 | MS.gene92661:CDS | 55.0% |
| !!! | TGGTTTTGGCAGAGGCTGGT+AGG | - | chr3.1:24058742-24058761 | MS.gene92661:CDS | 55.0% |
| AGGCAGCTGCAGAGTTGGAG+CGG | - | chr3.1:24059690-24059709 | MS.gene92661:intron | 60.0% | |
| CCAGCACTTATGGCAGGAGG+AGG | + | chr3.1:24060714-24060733 | None:intergenic | 60.0% | |
| CCTCCTCCTGCCATAAGTGC+TGG | - | chr3.1:24060711-24060730 | MS.gene92661:intron | 60.0% | |
| CTGTCGCAAGTCGGGCGAAA+AGG | + | chr3.1:24059220-24059239 | None:intergenic | 60.0% | |
| ! | CTGTTGCTGTTAAGGCGGGG+CGG | - | chr3.1:24058793-24058812 | MS.gene92661:intron | 60.0% |
| ! | TGTTGCTGTTAAGGCGGGGC+GGG | - | chr3.1:24058794-24058813 | MS.gene92661:intron | 60.0% |
| !! | TCTCGACAGGTGGCTTTGGC+AGG | - | chr3.1:24060948-24060967 | MS.gene92661:intron | 60.0% |
| GGCAGAGGCTGGTAGGTCGA+TGG | - | chr3.1:24058749-24058768 | MS.gene92661:CDS | 65.0% | |
| ! | GTTAAGGCGGGGCGGGTTCC+TGG | - | chr3.1:24058801-24058820 | MS.gene92661:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 24058738 | 24062004 | 24058738 | ID=MS.gene92661 |
| chr3.1 | mRNA | 24058738 | 24062004 | 24058738 | ID=MS.gene92661.t1;Parent=MS.gene92661 |
| chr3.1 | exon | 24061771 | 24062004 | 24061771 | ID=MS.gene92661.t1.exon1;Parent=MS.gene92661.t1 |
| chr3.1 | CDS | 24061771 | 24062004 | 24061771 | ID=cds.MS.gene92661.t1;Parent=MS.gene92661.t1 |
| chr3.1 | exon | 24060982 | 24061050 | 24060982 | ID=MS.gene92661.t1.exon2;Parent=MS.gene92661.t1 |
| chr3.1 | CDS | 24060982 | 24061050 | 24060982 | ID=cds.MS.gene92661.t1;Parent=MS.gene92661.t1 |
| chr3.1 | exon | 24059963 | 24060094 | 24059963 | ID=MS.gene92661.t1.exon3;Parent=MS.gene92661.t1 |
| chr3.1 | CDS | 24059963 | 24060094 | 24059963 | ID=cds.MS.gene92661.t1;Parent=MS.gene92661.t1 |
| chr3.1 | exon | 24059732 | 24059785 | 24059732 | ID=MS.gene92661.t1.exon4;Parent=MS.gene92661.t1 |
| chr3.1 | CDS | 24059732 | 24059785 | 24059732 | ID=cds.MS.gene92661.t1;Parent=MS.gene92661.t1 |
| chr3.1 | exon | 24059611 | 24059655 | 24059611 | ID=MS.gene92661.t1.exon5;Parent=MS.gene92661.t1 |
| chr3.1 | CDS | 24059611 | 24059655 | 24059611 | ID=cds.MS.gene92661.t1;Parent=MS.gene92661.t1 |
| chr3.1 | exon | 24059337 | 24059470 | 24059337 | ID=MS.gene92661.t1.exon6;Parent=MS.gene92661.t1 |
| chr3.1 | CDS | 24059337 | 24059470 | 24059337 | ID=cds.MS.gene92661.t1;Parent=MS.gene92661.t1 |
| chr3.1 | exon | 24058881 | 24059006 | 24058881 | ID=MS.gene92661.t1.exon7;Parent=MS.gene92661.t1 |
| chr3.1 | CDS | 24058881 | 24059006 | 24058881 | ID=cds.MS.gene92661.t1;Parent=MS.gene92661.t1 |
| chr3.1 | exon | 24058738 | 24058786 | 24058738 | ID=MS.gene92661.t1.exon8;Parent=MS.gene92661.t1 |
| chr3.1 | CDS | 24058738 | 24058786 | 24058738 | ID=cds.MS.gene92661.t1;Parent=MS.gene92661.t1 |
| Gene Sequence |
| Protein sequence |
