Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95520.t1 | XP_003599258.1 | 94.3 | 105 | 6 | 0 | 1 | 105 | 1 | 105 | 2.70E-45 | 191 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95520.t1 | P31336 | 50.0 | 106 | 49 | 3 | 1 | 104 | 1 | 104 | 1.9e-15 | 83.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95520.t1 | G7IWU6 | 94.3 | 105 | 6 | 0 | 1 | 105 | 1 | 105 | 2.0e-45 | 191.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene95520 | 0.84878 | 4.93E-60 | -1.69E-46 |
| MS.gene049173 | MS.gene95520 | 0.848058 | 7.80E-60 | -1.69E-46 |
| MS.gene049217 | MS.gene95520 | 0.867793 | 1.05E-65 | -1.69E-46 |
| MS.gene049222 | MS.gene95520 | 0.854146 | 1.49E-61 | -1.69E-46 |
| MS.gene049232 | MS.gene95520 | 0.805172 | 1.52E-49 | -1.69E-46 |
| MS.gene049285 | MS.gene95520 | 0.905799 | 2.93E-80 | -1.69E-46 |
| MS.gene049320 | MS.gene95520 | 0.908416 | 1.75E-81 | -1.69E-46 |
| MS.gene049609 | MS.gene95520 | 0.832723 | 8.03E-56 | -1.69E-46 |
| MS.gene049633 | MS.gene95520 | 0.803515 | 3.36E-49 | -1.69E-46 |
| MS.gene049805 | MS.gene95520 | 0.832011 | 1.21E-55 | -1.69E-46 |
| MS.gene049828 | MS.gene95520 | 0.802872 | 4.57E-49 | -1.69E-46 |
| MS.gene05010 | MS.gene95520 | 0.858269 | 9.25E-63 | -1.69E-46 |
| MS.gene050163 | MS.gene95520 | 0.896003 | 5.59E-76 | -1.69E-46 |
| MS.gene050165 | MS.gene95520 | 0.894128 | 3.30E-75 | -1.69E-46 |
| MS.gene050216 | MS.gene95520 | 0.800984 | 1.12E-48 | -1.69E-46 |
| MS.gene050333 | MS.gene95520 | 0.896248 | 4.43E-76 | -1.69E-46 |
| MS.gene050432 | MS.gene95520 | 0.829424 | 5.19E-55 | -1.69E-46 |
| MS.gene050444 | MS.gene95520 | 0.852512 | 4.40E-61 | -1.69E-46 |
| MS.gene050504 | MS.gene95520 | 0.871874 | 4.90E-67 | -1.69E-46 |
| MS.gene050518 | MS.gene95520 | 0.871557 | 6.24E-67 | -1.69E-46 |
| MS.gene050593 | MS.gene95520 | 0.814298 | 1.65E-51 | -1.69E-46 |
| MS.gene050612 | MS.gene95520 | 0.901033 | 4.03E-78 | -1.69E-46 |
| MS.gene050662 | MS.gene95520 | 0.806411 | 8.34E-50 | -1.69E-46 |
| MS.gene050675 | MS.gene95520 | 0.873727 | 1.17E-67 | -1.69E-46 |
| MS.gene050686 | MS.gene95520 | 0.802042 | 6.77E-49 | -1.69E-46 |
| MS.gene050699 | MS.gene95520 | 0.883488 | 4.30E-71 | -1.69E-46 |
| MS.gene050767 | MS.gene95520 | 0.870912 | 1.02E-66 | -1.69E-46 |
| MS.gene050770 | MS.gene95520 | 0.872262 | 3.64E-67 | -1.69E-46 |
| MS.gene050772 | MS.gene95520 | 0.875963 | 2.04E-68 | -1.69E-46 |
| MS.gene05079 | MS.gene95520 | -0.80655 | 7.79E-50 | -1.69E-46 |
| MS.gene050986 | MS.gene95520 | 0.881096 | 3.19E-70 | -1.69E-46 |
| MS.gene05100 | MS.gene95520 | 0.859246 | 4.72E-63 | -1.69E-46 |
| MS.gene051228 | MS.gene95520 | 0.898468 | 5.15E-77 | -1.69E-46 |
| MS.gene051317 | MS.gene95520 | 0.807896 | 4.04E-50 | -1.69E-46 |
| MS.gene051434 | MS.gene95520 | 0.800642 | 1.31E-48 | -1.69E-46 |
| MS.gene051551 | MS.gene95520 | 0.84882 | 4.80E-60 | -1.69E-46 |
| MS.gene051666 | MS.gene95520 | 0.817849 | 2.66E-52 | -1.69E-46 |
| MS.gene051692 | MS.gene95520 | 0.808575 | 2.90E-50 | -1.69E-46 |
| MS.gene051694 | MS.gene95520 | 0.806236 | 9.07E-50 | -1.69E-46 |
| MS.gene051810 | MS.gene95520 | 0.910421 | 1.91E-82 | -1.69E-46 |
| MS.gene051858 | MS.gene95520 | 0.835173 | 1.96E-56 | -1.69E-46 |
| MS.gene051949 | MS.gene95520 | 0.88178 | 1.81E-70 | -1.69E-46 |
| MS.gene052271 | MS.gene95520 | 0.905539 | 3.86E-80 | -1.69E-46 |
| MS.gene052290 | MS.gene95520 | 0.837029 | 6.61E-57 | -1.69E-46 |
| MS.gene052379 | MS.gene95520 | 0.865651 | 5.06E-65 | -1.69E-46 |
| MS.gene052615 | MS.gene95520 | 0.821682 | 3.55E-53 | -1.69E-46 |
| MS.gene052822 | MS.gene95520 | 0.80898 | 2.37E-50 | -1.69E-46 |
| MS.gene052870 | MS.gene95520 | 0.809532 | 1.81E-50 | -1.69E-46 |
| MS.gene052872 | MS.gene95520 | 0.810242 | 1.27E-50 | -1.69E-46 |
| MS.gene052916 | MS.gene95520 | 0.845476 | 3.97E-59 | -1.69E-46 |
| MS.gene052966 | MS.gene95520 | 0.811034 | 8.56E-51 | -1.69E-46 |
| MS.gene053009 | MS.gene95520 | 0.845401 | 4.16E-59 | -1.69E-46 |
| MS.gene053103 | MS.gene95520 | 0.802302 | 5.98E-49 | -1.69E-46 |
| MS.gene053104 | MS.gene95520 | 0.849929 | 2.36E-60 | -1.69E-46 |
| MS.gene053207 | MS.gene95520 | 0.854337 | 1.32E-61 | -1.69E-46 |
| MS.gene053213 | MS.gene95520 | 0.883654 | 3.74E-71 | -1.69E-46 |
| MS.gene053286 | MS.gene95520 | 0.883715 | 3.55E-71 | -1.69E-46 |
| MS.gene053322 | MS.gene95520 | 0.870676 | 1.22E-66 | -1.69E-46 |
| MS.gene053384 | MS.gene95520 | 0.81162 | 6.39E-51 | -1.69E-46 |
| MS.gene053561 | MS.gene95520 | -0.805387 | 1.37E-49 | -1.69E-46 |
| MS.gene053574 | MS.gene95520 | 0.812786 | 3.56E-51 | -1.69E-46 |
| MS.gene053632 | MS.gene95520 | 0.87138 | 7.14E-67 | -1.69E-46 |
| MS.gene053824 | MS.gene95520 | 0.801871 | 7.34E-49 | -1.69E-46 |
| MS.gene053916 | MS.gene95520 | 0.863395 | 2.57E-64 | -1.69E-46 |
| MS.gene054376 | MS.gene95520 | 0.846182 | 2.55E-59 | -1.69E-46 |
| MS.gene054543 | MS.gene95520 | 0.810932 | 9.01E-51 | -1.69E-46 |
| MS.gene054595 | MS.gene95520 | 0.808423 | 3.12E-50 | -1.69E-46 |
| MS.gene054600 | MS.gene95520 | 0.883633 | 3.80E-71 | -1.69E-46 |
| MS.gene054642 | MS.gene95520 | 0.918093 | 2.38E-86 | -1.69E-46 |
| MS.gene054802 | MS.gene95520 | 0.834851 | 2.36E-56 | -1.69E-46 |
| MS.gene054803 | MS.gene95520 | 0.83153 | 1.58E-55 | -1.69E-46 |
| MS.gene054804 | MS.gene95520 | 0.83853 | 2.72E-57 | -1.69E-46 |
| MS.gene054954 | MS.gene95520 | 0.88542 | 8.26E-72 | -1.69E-46 |
| MS.gene05505 | MS.gene95520 | 0.812691 | 3.73E-51 | -1.69E-46 |
| MS.gene055154 | MS.gene95520 | -0.813229 | 2.84E-51 | -1.69E-46 |
| MS.gene055206 | MS.gene95520 | 0.840599 | 7.89E-58 | -1.69E-46 |
| MS.gene055212 | MS.gene95520 | 0.849001 | 4.28E-60 | -1.69E-46 |
| MS.gene055254 | MS.gene95520 | 0.856379 | 3.35E-62 | -1.69E-46 |
| MS.gene055289 | MS.gene95520 | 0.80354 | 3.32E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene95520 | 0.907868 | 3.18E-81 | -1.69E-46 |
| MS.gene055397 | MS.gene95520 | 0.879765 | 9.54E-70 | -1.69E-46 |
| MS.gene055499 | MS.gene95520 | 0.864289 | 1.35E-64 | -1.69E-46 |
| MS.gene055502 | MS.gene95520 | 0.862772 | 4.00E-64 | -1.69E-46 |
| MS.gene055577 | MS.gene95520 | 0.842826 | 2.04E-58 | -1.69E-46 |
| MS.gene055634 | MS.gene95520 | 0.833688 | 4.62E-56 | -1.69E-46 |
| MS.gene055636 | MS.gene95520 | 0.880114 | 7.17E-70 | -1.69E-46 |
| MS.gene055638 | MS.gene95520 | 0.887313 | 1.59E-72 | -1.69E-46 |
| MS.gene055647 | MS.gene95520 | 0.867698 | 1.13E-65 | -1.69E-46 |
| MS.gene055722 | MS.gene95520 | 0.858378 | 8.59E-63 | -1.69E-46 |
| MS.gene055748 | MS.gene95520 | 0.816068 | 6.69E-52 | -1.69E-46 |
| MS.gene055751 | MS.gene95520 | 0.821416 | 4.08E-53 | -1.69E-46 |
| MS.gene055776 | MS.gene95520 | 0.852324 | 4.98E-61 | -1.69E-46 |
| MS.gene05592 | MS.gene95520 | 0.901602 | 2.27E-78 | -1.69E-46 |
| MS.gene055941 | MS.gene95520 | 0.835978 | 1.22E-56 | -1.69E-46 |
| MS.gene055956 | MS.gene95520 | -0.863218 | 2.91E-64 | -1.69E-46 |
| MS.gene056083 | MS.gene95520 | 0.828697 | 7.78E-55 | -1.69E-46 |
| MS.gene056374 | MS.gene95520 | 0.90263 | 7.96E-79 | -1.69E-46 |
| MS.gene056487 | MS.gene95520 | 0.80581 | 1.12E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene95520 | 0.833266 | 5.89E-56 | -1.69E-46 |
| MS.gene056510 | MS.gene95520 | 0.853425 | 2.41E-61 | -1.69E-46 |
| MS.gene056657 | MS.gene95520 | 0.910475 | 1.80E-82 | -1.69E-46 |
| MS.gene056692 | MS.gene95520 | 0.80039 | 1.47E-48 | -1.69E-46 |
| MS.gene056898 | MS.gene95520 | 0.816673 | 4.90E-52 | -1.69E-46 |
| MS.gene057076 | MS.gene95520 | 0.810367 | 1.19E-50 | -1.69E-46 |
| MS.gene057129 | MS.gene95520 | 0.900492 | 6.94E-78 | -1.69E-46 |
| MS.gene057246 | MS.gene95520 | 0.84091 | 6.54E-58 | -1.69E-46 |
| MS.gene057331 | MS.gene95520 | 0.866153 | 3.51E-65 | -1.69E-46 |
| MS.gene057416 | MS.gene95520 | 0.873449 | 1.46E-67 | -1.69E-46 |
| MS.gene057926 | MS.gene95520 | 0.85924 | 4.74E-63 | -1.69E-46 |
| MS.gene058006 | MS.gene95520 | 0.812724 | 3.67E-51 | -1.69E-46 |
| MS.gene058019 | MS.gene95520 | 0.82907 | 6.32E-55 | -1.69E-46 |
| MS.gene058323 | MS.gene95520 | 0.835256 | 1.87E-56 | -1.69E-46 |
| MS.gene058419 | MS.gene95520 | 0.898219 | 6.57E-77 | -1.69E-46 |
| MS.gene058544 | MS.gene95520 | 0.828286 | 9.78E-55 | -1.69E-46 |
| MS.gene058723 | MS.gene95520 | 0.877616 | 5.45E-69 | -1.69E-46 |
| MS.gene058773 | MS.gene95520 | 0.892378 | 1.68E-74 | -1.69E-46 |
| MS.gene058903 | MS.gene95520 | 0.803502 | 3.38E-49 | -1.69E-46 |
| MS.gene059022 | MS.gene95520 | 0.898662 | 4.26E-77 | -1.69E-46 |
| MS.gene059023 | MS.gene95520 | 0.817428 | 3.32E-52 | -1.69E-46 |
| MS.gene059029 | MS.gene95520 | 0.870251 | 1.68E-66 | -1.69E-46 |
| MS.gene05913 | MS.gene95520 | 0.834635 | 2.67E-56 | -1.69E-46 |
| MS.gene05934 | MS.gene95520 | 0.801931 | 7.13E-49 | -1.69E-46 |
| MS.gene059536 | MS.gene95520 | 0.809507 | 1.83E-50 | -1.69E-46 |
| MS.gene059677 | MS.gene95520 | 0.903052 | 5.17E-79 | -1.69E-46 |
| MS.gene059718 | MS.gene95520 | 0.870165 | 1.79E-66 | -1.69E-46 |
| MS.gene059756 | MS.gene95520 | 0.817114 | 3.90E-52 | -1.69E-46 |
| MS.gene059858 | MS.gene95520 | 0.82033 | 7.26E-53 | -1.69E-46 |
| MS.gene059865 | MS.gene95520 | 0.841905 | 3.58E-58 | -1.69E-46 |
| MS.gene059902 | MS.gene95520 | 0.828992 | 6.60E-55 | -1.69E-46 |
| MS.gene059960 | MS.gene95520 | 0.859887 | 3.03E-63 | -1.69E-46 |
| MS.gene060193 | MS.gene95520 | 0.841053 | 6.00E-58 | -1.69E-46 |
| MS.gene060337 | MS.gene95520 | -0.809949 | 1.47E-50 | -1.69E-46 |
| MS.gene060341 | MS.gene95520 | 0.830206 | 3.35E-55 | -1.69E-46 |
| MS.gene060482 | MS.gene95520 | 0.810785 | 9.70E-51 | -1.69E-46 |
| MS.gene060703 | MS.gene95520 | 0.842014 | 3.35E-58 | -1.69E-46 |
| MS.gene060727 | MS.gene95520 | 0.812296 | 4.55E-51 | -1.69E-46 |
| MS.gene060728 | MS.gene95520 | 0.844472 | 7.40E-59 | -1.69E-46 |
| MS.gene060762 | MS.gene95520 | 0.845074 | 5.09E-59 | -1.69E-46 |
| MS.gene06077 | MS.gene95520 | 0.819043 | 1.43E-52 | -1.69E-46 |
| MS.gene060804 | MS.gene95520 | 0.840835 | 6.84E-58 | -1.69E-46 |
| MS.gene060818 | MS.gene95520 | 0.835258 | 1.86E-56 | -1.69E-46 |
| MS.gene06092 | MS.gene95520 | 0.826328 | 2.88E-54 | -1.69E-46 |
| MS.gene060982 | MS.gene95520 | 0.808049 | 3.75E-50 | -1.69E-46 |
| MS.gene061041 | MS.gene95520 | 0.821957 | 3.06E-53 | -1.69E-46 |
| MS.gene061134 | MS.gene95520 | 0.81293 | 3.31E-51 | -1.69E-46 |
| MS.gene061150 | MS.gene95520 | 0.859767 | 3.29E-63 | -1.69E-46 |
| MS.gene061171 | MS.gene95520 | 0.808743 | 2.67E-50 | -1.69E-46 |
| MS.gene061200 | MS.gene95520 | 0.880264 | 6.33E-70 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95520.t1 | MTR_3g030860 | 94.286 | 105 | 6 | 0 | 1 | 105 | 1 | 105 | 2.04e-57 | 172 |
| MS.gene95520.t1 | MTR_3g030850 | 80.952 | 105 | 19 | 1 | 1 | 104 | 1 | 105 | 4.01e-51 | 156 |
| MS.gene95520.t1 | MTR_4g037505 | 65.741 | 108 | 34 | 3 | 1 | 105 | 1 | 108 | 1.12e-37 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95520.t1 | AT1G51400 | 55.140 | 107 | 43 | 3 | 1 | 104 | 1 | 105 | 2.25e-27 | 97.1 |
| MS.gene95520.t1 | AT3G21055 | 54.206 | 107 | 43 | 4 | 1 | 105 | 1 | 103 | 3.02e-23 | 86.3 |
| MS.gene95520.t1 | AT3G21055 | 54.206 | 107 | 43 | 4 | 1 | 105 | 41 | 143 | 4.64e-23 | 87.0 |
Find 33 sgRNAs with CRISPR-Local
Find 37 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGCTGTTTGCTCTGTTGC+TGG | 0.185357 | 3.4:-24355636 | MS.gene95520:CDS |
| GCCTCTGGGGTGCCTCTTCT+TGG | 0.187280 | 3.4:+24355591 | None:intergenic |
| CTGCTGTTTGCTCTGTTGCT+GGG | 0.300217 | 3.4:-24355635 | MS.gene95520:CDS |
| ATTGCTACCCTCCTTGTCAT+TGG | 0.354454 | 3.4:+24355692 | None:intergenic |
| GTTGGGTTAGTGACACAAAC+AGG | 0.359822 | 3.4:+24355552 | None:intergenic |
| CTCTGTTGCTGGGGTTGCAA+TGG | 0.391387 | 3.4:-24355625 | MS.gene95520:CDS |
| AACCGATGATCGGTTGGTTA+CGG | 0.418255 | 3.4:+24355782 | None:intergenic |
| GATGATCGGTTGGTTACGGC+TGG | 0.474152 | 3.4:+24355786 | None:intergenic |
| GCTAGGATTTGTCGCTATTG+AGG | 0.474783 | 3.4:-24355528 | None:intergenic |
| TGCTGTTTGCTCTGTTGCTG+GGG | 0.508878 | 3.4:-24355634 | MS.gene95520:CDS |
| TAGCGACAAATCCTAGCAGT+TGG | 0.523285 | 3.4:+24355534 | None:intergenic |
| GCTGCGTTGCAACCGATGAT+CGG | 0.526416 | 3.4:+24355772 | None:intergenic |
| GGGGTTGCAATGGCAGATGA+TGG | 0.535455 | 3.4:-24355615 | MS.gene95520:CDS |
| AGCGACAAATCCTAGCAGTT+GGG | 0.546386 | 3.4:+24355535 | None:intergenic |
| CGTTGCAACCGATGATCGGT+TGG | 0.553263 | 3.4:+24355776 | None:intergenic |
| AGTGCTGTAAGAGCAGTTGA+AGG | 0.554404 | 3.4:-24355735 | MS.gene95520:CDS |
| AATCACTATGACATCCTCAA+TGG | 0.558898 | 3.4:-24355817 | MS.gene95520:CDS |
| ACTATGACATCCTCAATGGT+TGG | 0.565016 | 3.4:-24355813 | MS.gene95520:CDS |
| GTGTCACTAACCCAACTGCT+AGG | 0.567214 | 3.4:-24355545 | MS.gene95520:CDS |
| AATGACAAGGAGGGTAGCAA+TGG | 0.572603 | 3.4:-24355690 | MS.gene95520:CDS |
| GTGCTGTAAGAGCAGTTGAA+GGG | 0.585017 | 3.4:-24355734 | MS.gene95520:CDS |
| AGCCGTAACCAACCGATCAT+CGG | 0.587544 | 3.4:-24355784 | MS.gene95520:CDS |
| ACAAGGAGGGTAGCAATGGA+AGG | 0.594273 | 3.4:-24355686 | MS.gene95520:CDS |
| TGCTGTAAGAGCAGTTGAAG+GGG | 0.596756 | 3.4:-24355733 | MS.gene95520:CDS |
| ATGATCGGTTGGTTACGGCT+GGG | 0.625964 | 3.4:+24355787 | None:intergenic |
| GCAGATGATGGACCAAGAAG+AGG | 0.628210 | 3.4:-24355603 | MS.gene95520:CDS |
| GGCTGGGAAACCAACCATTG+AGG | 0.639229 | 3.4:+24355803 | None:intergenic |
| ACCAAGAAGAGGCACCCCAG+AGG | 0.672940 | 3.4:-24355592 | MS.gene95520:CDS |
| GATCATCGGTTGCAACGCAG+CGG | 0.682918 | 3.4:-24355770 | MS.gene95520:CDS |
| AGTTGTACCAATGACAAGGA+GGG | 0.684053 | 3.4:-24355699 | MS.gene95520:CDS |
| CAGTTGTACCAATGACAAGG+AGG | 0.687873 | 3.4:-24355700 | MS.gene95520:CDS |
| TTGGGTTAGTGACACAAACA+GGG | 0.691418 | 3.4:+24355553 | None:intergenic |
| GATCAGTTGTACCAATGACA+AGG | 0.701301 | 3.4:-24355703 | MS.gene95520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AATCACTATGACATCCTCAA+TGG | - | chr3.4:24355538-24355557 | MS.gene95520:CDS | 35.0% | |
| ACTATGACATCCTCAATGGT+TGG | - | chr3.4:24355542-24355561 | MS.gene95520:CDS | 40.0% | |
| AGTTGTACCAATGACAAGGA+GGG | - | chr3.4:24355656-24355675 | MS.gene95520:CDS | 40.0% | |
| GATCAGTTGTACCAATGACA+AGG | - | chr3.4:24355652-24355671 | MS.gene95520:CDS | 40.0% | |
| !! | TTGGGTTAGTGACACAAACA+GGG | + | chr3.4:24355805-24355824 | None:intergenic | 40.0% |
| !!! | AACAGGGCCATACTTTTTCT+TGG | + | chr3.4:24355789-24355808 | None:intergenic | 40.0% |
| !!! | ATACTTTTTCTTGGCCTCTG+GGG | + | chr3.4:24355780-24355799 | None:intergenic | 40.0% |
| !!! | CATACTTTTTCTTGGCCTCT+GGG | + | chr3.4:24355781-24355800 | None:intergenic | 40.0% |
| AATGACAAGGAGGGTAGCAA+TGG | - | chr3.4:24355665-24355684 | MS.gene95520:CDS | 45.0% | |
| AGCGACAAATCCTAGCAGTT+GGG | + | chr3.4:24355823-24355842 | None:intergenic | 45.0% | |
| AGTGCTGTAAGAGCAGTTGA+AGG | - | chr3.4:24355620-24355639 | MS.gene95520:CDS | 45.0% | |
| ATTGCTACCCTCCTTGTCAT+TGG | + | chr3.4:24355666-24355685 | None:intergenic | 45.0% | |
| CAGTTGTACCAATGACAAGG+AGG | - | chr3.4:24355655-24355674 | MS.gene95520:CDS | 45.0% | |
| CCAGAGGCCAAGAAAAAGTA+TGG | - | chr3.4:24355779-24355798 | MS.gene95520:CDS | 45.0% | |
| GTGCTGTAAGAGCAGTTGAA+GGG | - | chr3.4:24355621-24355640 | MS.gene95520:CDS | 45.0% | |
| TAGCGACAAATCCTAGCAGT+TGG | + | chr3.4:24355824-24355843 | None:intergenic | 45.0% | |
| TGCTGTAAGAGCAGTTGAAG+GGG | - | chr3.4:24355622-24355641 | MS.gene95520:CDS | 45.0% | |
| ! | AACCGATGATCGGTTGGTTA+CGG | + | chr3.4:24355576-24355595 | None:intergenic | 45.0% |
| !! | GTTGGGTTAGTGACACAAAC+AGG | + | chr3.4:24355806-24355825 | None:intergenic | 45.0% |
| !!! | CCATACTTTTTCTTGGCCTC+TGG | + | chr3.4:24355782-24355801 | None:intergenic | 45.0% |
| ACAAGGAGGGTAGCAATGGA+AGG | - | chr3.4:24355669-24355688 | MS.gene95520:CDS | 50.0% | |
| AGCCGTAACCAACCGATCAT+CGG | - | chr3.4:24355571-24355590 | MS.gene95520:CDS | 50.0% | |
| ! | ATGATCGGTTGGTTACGGCT+GGG | + | chr3.4:24355571-24355590 | None:intergenic | 50.0% |
| ! | CTGCTGTTTGCTCTGTTGCT+GGG | - | chr3.4:24355720-24355739 | MS.gene95520:CDS | 50.0% |
| ! | GTGTCACTAACCCAACTGCT+AGG | - | chr3.4:24355810-24355829 | MS.gene95520:CDS | 50.0% |
| ! | TGCTGTTTGCTCTGTTGCTG+GGG | - | chr3.4:24355721-24355740 | MS.gene95520:CDS | 50.0% |
| !! | GCAGATGATGGACCAAGAAG+AGG | - | chr3.4:24355752-24355771 | MS.gene95520:CDS | 50.0% |
| CGTTGCAACCGATGATCGGT+TGG | + | chr3.4:24355582-24355601 | None:intergenic | 55.0% | |
| CTCTGTTGCTGGGGTTGCAA+TGG | - | chr3.4:24355730-24355749 | MS.gene95520:CDS | 55.0% | |
| GCTGCGTTGCAACCGATGAT+CGG | + | chr3.4:24355586-24355605 | None:intergenic | 55.0% | |
| GGCTGGGAAACCAACCATTG+AGG | + | chr3.4:24355555-24355574 | None:intergenic | 55.0% | |
| GGGGTTGCAATGGCAGATGA+TGG | - | chr3.4:24355740-24355759 | MS.gene95520:CDS | 55.0% | |
| ! | GATCATCGGTTGCAACGCAG+CGG | - | chr3.4:24355585-24355604 | MS.gene95520:CDS | 55.0% |
| ! | GATGATCGGTTGGTTACGGC+TGG | + | chr3.4:24355572-24355591 | None:intergenic | 55.0% |
| ! | GCTGCTGTTTGCTCTGTTGC+TGG | - | chr3.4:24355719-24355738 | MS.gene95520:CDS | 55.0% |
| !! | ACCAAGAAGAGGCACCCCAG+AGG | - | chr3.4:24355763-24355782 | MS.gene95520:CDS | 60.0% |
| !! | GCCTCTGGGGTGCCTCTTCT+TGG | + | chr3.4:24355767-24355786 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 24355530 | 24355847 | 24355530 | ID=MS.gene95520 |
| chr3.4 | mRNA | 24355530 | 24355847 | 24355530 | ID=MS.gene95520.t1;Parent=MS.gene95520 |
| chr3.4 | exon | 24355530 | 24355847 | 24355530 | ID=MS.gene95520.t1.exon1;Parent=MS.gene95520.t1 |
| chr3.4 | CDS | 24355530 | 24355847 | 24355530 | ID=cds.MS.gene95520.t1;Parent=MS.gene95520.t1 |
| Gene Sequence |
| Protein sequence |
