Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66438.t1 | XP_024628409.1 | 94 | 333 | 16 | 2 | 1 | 329 | 38 | 370 | 5.20E-186 | 660.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66438.t1 | Q9STX2 | 66.9 | 344 | 104 | 4 | 1 | 339 | 1 | 339 | 1.9e-133 | 476.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66438.t1 | A0A396JJA9 | 94.0 | 333 | 16 | 2 | 1 | 329 | 38 | 370 | 3.7e-186 | 660.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene66438 | 0.827827 | 1.26E-54 | -1.69E-46 |
| MS.gene049173 | MS.gene66438 | 0.81616 | 6.38E-52 | -1.69E-46 |
| MS.gene049217 | MS.gene66438 | 0.865949 | 4.07E-65 | -1.69E-46 |
| MS.gene049222 | MS.gene66438 | 0.849848 | 2.48E-60 | -1.69E-46 |
| MS.gene049285 | MS.gene66438 | 0.872986 | 2.08E-67 | -1.69E-46 |
| MS.gene049320 | MS.gene66438 | 0.860199 | 2.44E-63 | -1.69E-46 |
| MS.gene049609 | MS.gene66438 | 0.831711 | 1.43E-55 | -1.69E-46 |
| MS.gene049633 | MS.gene66438 | 0.803125 | 4.05E-49 | -1.69E-46 |
| MS.gene049805 | MS.gene66438 | 0.836628 | 8.37E-57 | -1.69E-46 |
| MS.gene05010 | MS.gene66438 | 0.806032 | 1.00E-49 | -1.69E-46 |
| MS.gene050163 | MS.gene66438 | 0.852043 | 5.98E-61 | -1.69E-46 |
| MS.gene050165 | MS.gene66438 | 0.840428 | 8.75E-58 | -1.69E-46 |
| MS.gene050333 | MS.gene66438 | 0.825111 | 5.60E-54 | -1.69E-46 |
| MS.gene050444 | MS.gene66438 | 0.81934 | 1.22E-52 | -1.69E-46 |
| MS.gene050504 | MS.gene66438 | 0.838049 | 3.62E-57 | -1.69E-46 |
| MS.gene050518 | MS.gene66438 | 0.837445 | 5.18E-57 | -1.69E-46 |
| MS.gene050538 | MS.gene66438 | 0.822937 | 1.81E-53 | -1.69E-46 |
| MS.gene050593 | MS.gene66438 | 0.822676 | 2.09E-53 | -1.69E-46 |
| MS.gene050612 | MS.gene66438 | 0.840485 | 8.45E-58 | -1.69E-46 |
| MS.gene050662 | MS.gene66438 | 0.809975 | 1.45E-50 | -1.69E-46 |
| MS.gene050675 | MS.gene66438 | 0.834886 | 2.31E-56 | -1.69E-46 |
| MS.gene050686 | MS.gene66438 | 0.817659 | 2.94E-52 | -1.69E-46 |
| MS.gene050699 | MS.gene66438 | 0.835291 | 1.83E-56 | -1.69E-46 |
| MS.gene050747 | MS.gene66438 | 0.814228 | 1.71E-51 | -1.69E-46 |
| MS.gene050767 | MS.gene66438 | 0.801528 | 8.63E-49 | -1.69E-46 |
| MS.gene050770 | MS.gene66438 | 0.805861 | 1.09E-49 | -1.69E-46 |
| MS.gene050772 | MS.gene66438 | 0.869328 | 3.36E-66 | -1.69E-46 |
| MS.gene05080 | MS.gene66438 | 0.814045 | 1.88E-51 | -1.69E-46 |
| MS.gene050950 | MS.gene66438 | 0.812303 | 4.54E-51 | -1.69E-46 |
| MS.gene050986 | MS.gene66438 | 0.804827 | 1.79E-49 | -1.69E-46 |
| MS.gene05100 | MS.gene66438 | 0.821811 | 3.31E-53 | -1.69E-46 |
| MS.gene051228 | MS.gene66438 | 0.853355 | 2.52E-61 | -1.69E-46 |
| MS.gene051387 | MS.gene66438 | 0.800399 | 1.47E-48 | -1.69E-46 |
| MS.gene051551 | MS.gene66438 | 0.818914 | 1.53E-52 | -1.69E-46 |
| MS.gene051666 | MS.gene66438 | 0.831994 | 1.22E-55 | -1.69E-46 |
| MS.gene051810 | MS.gene66438 | 0.874744 | 5.31E-68 | -1.69E-46 |
| MS.gene051858 | MS.gene66438 | 0.846657 | 1.89E-59 | -1.69E-46 |
| MS.gene051949 | MS.gene66438 | 0.807365 | 5.24E-50 | -1.69E-46 |
| MS.gene052271 | MS.gene66438 | 0.8512 | 1.04E-60 | -1.69E-46 |
| MS.gene052290 | MS.gene66438 | 0.828591 | 8.26E-55 | -1.69E-46 |
| MS.gene052379 | MS.gene66438 | 0.873803 | 1.11E-67 | -1.69E-46 |
| MS.gene052484 | MS.gene66438 | 0.816352 | 5.78E-52 | -1.69E-46 |
| MS.gene052503 | MS.gene66438 | 0.80202 | 6.84E-49 | -1.69E-46 |
| MS.gene052615 | MS.gene66438 | 0.851802 | 7.00E-61 | -1.69E-46 |
| MS.gene052822 | MS.gene66438 | 0.800047 | 1.73E-48 | -1.69E-46 |
| MS.gene052870 | MS.gene66438 | 0.826532 | 2.58E-54 | -1.69E-46 |
| MS.gene052872 | MS.gene66438 | 0.833643 | 4.74E-56 | -1.69E-46 |
| MS.gene052916 | MS.gene66438 | 0.836489 | 9.08E-57 | -1.69E-46 |
| MS.gene053009 | MS.gene66438 | 0.814856 | 1.25E-51 | -1.69E-46 |
| MS.gene053103 | MS.gene66438 | 0.803782 | 2.96E-49 | -1.69E-46 |
| MS.gene053104 | MS.gene66438 | 0.857436 | 1.63E-62 | -1.69E-46 |
| MS.gene053207 | MS.gene66438 | 0.837587 | 4.76E-57 | -1.69E-46 |
| MS.gene053213 | MS.gene66438 | 0.86632 | 3.11E-65 | -1.69E-46 |
| MS.gene053286 | MS.gene66438 | 0.86176 | 8.18E-64 | -1.69E-46 |
| MS.gene053322 | MS.gene66438 | 0.849033 | 4.19E-60 | -1.69E-46 |
| MS.gene053574 | MS.gene66438 | 0.834044 | 3.76E-56 | -1.69E-46 |
| MS.gene053632 | MS.gene66438 | 0.882431 | 1.05E-70 | -1.69E-46 |
| MS.gene053824 | MS.gene66438 | 0.816065 | 6.70E-52 | -1.69E-46 |
| MS.gene053916 | MS.gene66438 | 0.848797 | 4.88E-60 | -1.69E-46 |
| MS.gene054003 | MS.gene66438 | 0.803186 | 3.93E-49 | -1.69E-46 |
| MS.gene054543 | MS.gene66438 | 0.811671 | 6.23E-51 | -1.69E-46 |
| MS.gene054595 | MS.gene66438 | 0.808393 | 3.17E-50 | -1.69E-46 |
| MS.gene054600 | MS.gene66438 | 0.843578 | 1.29E-58 | -1.69E-46 |
| MS.gene054642 | MS.gene66438 | 0.898502 | 4.98E-77 | -1.69E-46 |
| MS.gene054954 | MS.gene66438 | 0.840127 | 1.05E-57 | -1.69E-46 |
| MS.gene05505 | MS.gene66438 | 0.847931 | 8.46E-60 | -1.69E-46 |
| MS.gene055206 | MS.gene66438 | 0.856441 | 3.21E-62 | -1.69E-46 |
| MS.gene055212 | MS.gene66438 | 0.808723 | 2.69E-50 | -1.69E-46 |
| MS.gene055289 | MS.gene66438 | 0.809884 | 1.52E-50 | -1.69E-46 |
| MS.gene055362 | MS.gene66438 | 0.837922 | 3.91E-57 | -1.69E-46 |
| MS.gene055397 | MS.gene66438 | 0.830086 | 3.58E-55 | -1.69E-46 |
| MS.gene055499 | MS.gene66438 | 0.834426 | 3.02E-56 | -1.69E-46 |
| MS.gene055502 | MS.gene66438 | 0.864485 | 1.18E-64 | -1.69E-46 |
| MS.gene055577 | MS.gene66438 | 0.849099 | 4.02E-60 | -1.69E-46 |
| MS.gene055636 | MS.gene66438 | 0.812241 | 4.68E-51 | -1.69E-46 |
| MS.gene055638 | MS.gene66438 | 0.812655 | 3.80E-51 | -1.69E-46 |
| MS.gene055647 | MS.gene66438 | 0.831833 | 1.33E-55 | -1.69E-46 |
| MS.gene055722 | MS.gene66438 | 0.845895 | 3.05E-59 | -1.69E-46 |
| MS.gene05592 | MS.gene66438 | 0.883928 | 2.96E-71 | -1.69E-46 |
| MS.gene055941 | MS.gene66438 | 0.856917 | 2.33E-62 | -1.69E-46 |
| MS.gene055956 | MS.gene66438 | -0.804824 | 1.79E-49 | -1.69E-46 |
| MS.gene056083 | MS.gene66438 | 0.813771 | 2.16E-51 | -1.69E-46 |
| MS.gene056374 | MS.gene66438 | 0.857192 | 1.93E-62 | -1.69E-46 |
| MS.gene056448 | MS.gene66438 | 0.816607 | 5.07E-52 | -1.69E-46 |
| MS.gene056487 | MS.gene66438 | 0.828604 | 8.20E-55 | -1.69E-46 |
| MS.gene056510 | MS.gene66438 | 0.828382 | 9.28E-55 | -1.69E-46 |
| MS.gene056511 | MS.gene66438 | 0.802863 | 4.58E-49 | -1.69E-46 |
| MS.gene056609 | MS.gene66438 | 0.806581 | 7.68E-50 | -1.69E-46 |
| MS.gene056657 | MS.gene66438 | 0.879314 | 1.38E-69 | -1.69E-46 |
| MS.gene056897 | MS.gene66438 | 0.802936 | 4.43E-49 | -1.69E-46 |
| MS.gene056898 | MS.gene66438 | 0.801287 | 9.67E-49 | -1.69E-46 |
| MS.gene057076 | MS.gene66438 | 0.847017 | 1.51E-59 | -1.69E-46 |
| MS.gene057129 | MS.gene66438 | 0.865076 | 7.68E-65 | -1.69E-46 |
| MS.gene057146 | MS.gene66438 | 0.806797 | 6.91E-50 | -1.69E-46 |
| MS.gene057331 | MS.gene66438 | 0.826139 | 3.20E-54 | -1.69E-46 |
| MS.gene05735 | MS.gene66438 | 0.807895 | 4.04E-50 | -1.69E-46 |
| MS.gene057416 | MS.gene66438 | 0.863027 | 3.34E-64 | -1.69E-46 |
| MS.gene057926 | MS.gene66438 | 0.861469 | 1.00E-63 | -1.69E-46 |
| MS.gene058006 | MS.gene66438 | 0.811002 | 8.70E-51 | -1.69E-46 |
| MS.gene058019 | MS.gene66438 | 0.8109 | 9.16E-51 | -1.69E-46 |
| MS.gene058130 | MS.gene66438 | 0.81394 | 1.98E-51 | -1.69E-46 |
| MS.gene058323 | MS.gene66438 | 0.818809 | 1.61E-52 | -1.69E-46 |
| MS.gene058338 | MS.gene66438 | 0.813266 | 2.79E-51 | -1.69E-46 |
| MS.gene058419 | MS.gene66438 | 0.867698 | 1.13E-65 | -1.69E-46 |
| MS.gene058544 | MS.gene66438 | 0.823515 | 1.33E-53 | -1.69E-46 |
| MS.gene058723 | MS.gene66438 | 0.853768 | 1.92E-61 | -1.69E-46 |
| MS.gene058773 | MS.gene66438 | 0.824277 | 8.81E-54 | -1.69E-46 |
| MS.gene059022 | MS.gene66438 | 0.827524 | 1.49E-54 | -1.69E-46 |
| MS.gene059023 | MS.gene66438 | 0.821557 | 3.79E-53 | -1.69E-46 |
| MS.gene059029 | MS.gene66438 | 0.862699 | 4.21E-64 | -1.69E-46 |
| MS.gene05913 | MS.gene66438 | 0.841718 | 4.01E-58 | -1.69E-46 |
| MS.gene05934 | MS.gene66438 | 0.838749 | 2.39E-57 | -1.69E-46 |
| MS.gene059536 | MS.gene66438 | 0.819064 | 1.41E-52 | -1.69E-46 |
| MS.gene059677 | MS.gene66438 | 0.860979 | 1.42E-63 | -1.69E-46 |
| MS.gene059711 | MS.gene66438 | 0.800353 | 1.50E-48 | -1.69E-46 |
| MS.gene059718 | MS.gene66438 | 0.849579 | 2.95E-60 | -1.69E-46 |
| MS.gene059865 | MS.gene66438 | 0.820374 | 7.09E-53 | -1.69E-46 |
| MS.gene059902 | MS.gene66438 | 0.84093 | 6.46E-58 | -1.69E-46 |
| MS.gene059960 | MS.gene66438 | 0.826969 | 2.03E-54 | -1.69E-46 |
| MS.gene060341 | MS.gene66438 | 0.827717 | 1.34E-54 | -1.69E-46 |
| MS.gene060482 | MS.gene66438 | 0.822473 | 2.32E-53 | -1.69E-46 |
| MS.gene060703 | MS.gene66438 | 0.833287 | 5.81E-56 | -1.69E-46 |
| MS.gene060727 | MS.gene66438 | 0.808933 | 2.43E-50 | -1.69E-46 |
| MS.gene060728 | MS.gene66438 | 0.825865 | 3.71E-54 | -1.69E-46 |
| MS.gene060762 | MS.gene66438 | 0.809672 | 1.69E-50 | -1.69E-46 |
| MS.gene060804 | MS.gene66438 | 0.879993 | 7.91E-70 | -1.69E-46 |
| MS.gene060818 | MS.gene66438 | 0.84332 | 1.51E-58 | -1.69E-46 |
| MS.gene060835 | MS.gene66438 | 0.809464 | 1.87E-50 | -1.69E-46 |
| MS.gene060837 | MS.gene66438 | 0.809642 | 1.71E-50 | -1.69E-46 |
| MS.gene06092 | MS.gene66438 | 0.824757 | 6.79E-54 | -1.69E-46 |
| MS.gene060982 | MS.gene66438 | 0.803983 | 2.69E-49 | -1.69E-46 |
| MS.gene061041 | MS.gene66438 | 0.856657 | 2.77E-62 | -1.69E-46 |
| MS.gene061134 | MS.gene66438 | 0.822357 | 2.47E-53 | -1.69E-46 |
| MS.gene061150 | MS.gene66438 | 0.819769 | 9.76E-53 | -1.69E-46 |
| MS.gene061200 | MS.gene66438 | 0.842888 | 1.96E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66438.t1 | MTR_1g018590 | 92.625 | 339 | 15 | 2 | 1 | 329 | 1 | 339 | 0.0 | 649 |
| MS.gene66438.t1 | MTR_1g018610 | 84.478 | 335 | 46 | 3 | 1 | 329 | 34 | 368 | 0.0 | 586 |
| MS.gene66438.t1 | MTR_1g018580 | 82.583 | 333 | 30 | 3 | 1 | 329 | 1 | 309 | 0.0 | 558 |
| MS.gene66438.t1 | MTR_3g102760 | 70.448 | 335 | 93 | 3 | 1 | 329 | 1 | 335 | 1.29e-175 | 493 |
| MS.gene66438.t1 | MTR_3g102770 | 69.162 | 334 | 98 | 2 | 1 | 329 | 1 | 334 | 1.01e-170 | 480 |
| MS.gene66438.t1 | MTR_3g013890 | 68.358 | 335 | 100 | 3 | 1 | 329 | 1 | 335 | 1.53e-168 | 474 |
| MS.gene66438.t1 | MTR_3g102730 | 68.358 | 335 | 100 | 3 | 1 | 329 | 1 | 335 | 7.08e-168 | 473 |
| MS.gene66438.t1 | MTR_4g073090 | 45.192 | 312 | 165 | 4 | 24 | 329 | 5 | 316 | 3.06e-88 | 270 |
| MS.gene66438.t1 | MTR_4g121590 | 44.516 | 310 | 166 | 4 | 26 | 329 | 7 | 316 | 4.55e-86 | 264 |
| MS.gene66438.t1 | MTR_4g121570 | 43.810 | 315 | 170 | 6 | 26 | 334 | 7 | 320 | 1.43e-85 | 263 |
| MS.gene66438.t1 | MTR_3g463660 | 39.198 | 324 | 179 | 9 | 18 | 329 | 2 | 319 | 6.94e-67 | 215 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66438.t1 | AT4G24220 | 67.665 | 334 | 102 | 3 | 1 | 329 | 1 | 333 | 1.85e-165 | 467 |
| MS.gene66438.t1 | AT4G24220 | 67.568 | 333 | 103 | 3 | 1 | 329 | 1 | 332 | 7.40e-165 | 465 |
| MS.gene66438.t1 | AT5G58750 | 37.538 | 325 | 173 | 14 | 24 | 329 | 8 | 321 | 2.16e-61 | 201 |
| MS.gene66438.t1 | AT5G58750 | 37.538 | 325 | 173 | 14 | 24 | 329 | 16 | 329 | 2.37e-61 | 201 |
Find 102 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATAGCTGAACAACATATT+TGG | 0.126207 | 1.4:+4656944 | MS.gene66438:CDS |
| TGGCAAAGATTCGCAGTATT+TGG | 0.147810 | 1.4:-4656383 | None:intergenic |
| CTCCAACTTCTTCAAGCTTT+TGG | 0.176864 | 1.4:-4657178 | None:intergenic |
| AGCATGAGGGTCTTCCTTTA+AGG | 0.227760 | 1.4:+4656866 | MS.gene66438:CDS |
| CGGTTTGAGATCGATGATTA+TGG | 0.235119 | 1.4:+4657060 | MS.gene66438:CDS |
| TTTGAGCCAGGAAACCTTAA+AGG | 0.244750 | 1.4:-4656880 | None:intergenic |
| CTCTTGTGTGTAATAGAAAT+TGG | 0.263026 | 1.4:-4656516 | None:intergenic |
| AATAGCTGAACAACATATTT+GGG | 0.263385 | 1.4:+4656945 | MS.gene66438:CDS |
| GGTCTTCCTTTAAGGTTTCC+TGG | 0.265961 | 1.4:+4656874 | MS.gene66438:CDS |
| CAAAATGTAGCATTGATTAT+AGG | 0.272352 | 1.4:+4656065 | MS.gene66438:CDS |
| GGTGGTCCATGGAAGGTTTA+TGG | 0.276380 | 1.4:+4656146 | MS.gene66438:CDS |
| AATCGACCACACCCTATCTT+TGG | 0.298584 | 1.4:+4656781 | MS.gene66438:CDS |
| CTATAATCAATGCTACATTT+TGG | 0.303787 | 1.4:-4656064 | None:intergenic |
| TAAGGTGAAAATCCAAAGAT+AGG | 0.338018 | 1.4:-4656793 | None:intergenic |
| AAGGCTTCATTCTTTGCATT+AGG | 0.350949 | 1.4:-4656979 | None:intergenic |
| GGCAAAGATTCGCAGTATTT+GGG | 0.373235 | 1.4:-4656382 | None:intergenic |
| AATATGTGTCACATCAGTTA+AGG | 0.393193 | 1.4:-4656270 | None:intergenic |
| ATCGGAGATAATGAAGGATA+AGG | 0.401059 | 1.4:+4657110 | MS.gene66438:CDS |
| TCAGCGTTCCACGTTGGTTG+TGG | 0.408075 | 1.4:-4656182 | None:intergenic |
| TGCCATGTGTCCCTTCAAAC+AGG | 0.417824 | 1.4:+4656401 | MS.gene66438:CDS |
| AAGTTAACGGTTCAATGTTA+AGG | 0.423586 | 1.4:+4656339 | MS.gene66438:CDS |
| GATCGATGATTATGGATTTG+AGG | 0.440058 | 1.4:+4657068 | MS.gene66438:CDS |
| ATCGCCATTGGTGCAGTTGA+AGG | 0.452749 | 1.4:-4656998 | None:intergenic |
| TTGAGGAGGGGTCGGAGTTG+AGG | 0.458175 | 1.4:+4657085 | MS.gene66438:CDS |
| TATTCAAGTGGAAACATTTG+TGG | 0.460085 | 1.4:+4657022 | MS.gene66438:CDS |
| AGTGCATAGTTCCTGTTTGA+AGG | 0.463560 | 1.4:-4656412 | None:intergenic |
| CGATCGTTTCGAAGGATCCT+AGG | 0.464183 | 1.4:-4656436 | None:intergenic |
| TTGAGCCTCTGTGGACATGC+TGG | 0.468037 | 1.4:-4656309 | None:intergenic |
| GGGGTCGGAGTTGAGGTTAT+CGG | 0.468894 | 1.4:+4657092 | MS.gene66438:CDS |
| TTAAGGTTTCCTGGCTCAAA+AGG | 0.474340 | 1.4:+4656883 | MS.gene66438:CDS |
| TGTGCAGATTACAGAATTCA+AGG | 0.476950 | 1.4:+4656025 | MS.gene66438:intron |
| TACAGCATGATGAACGTCAT+TGG | 0.481948 | 1.4:+4656814 | MS.gene66438:CDS |
| TGCTGGTTAGCTAAAGCATC+TGG | 0.483308 | 1.4:+4655899 | MS.gene66438:CDS |
| CACCAAAAGCTTGAAGAAGT+TGG | 0.484923 | 1.4:+4657176 | MS.gene66438:CDS |
| AGCTTGAAGAAGTTGGAGAT+TGG | 0.485224 | 1.4:+4657183 | MS.gene66438:CDS |
| CTTCCTCTTGACGACACACC+AGG | 0.485639 | 1.4:+4656125 | MS.gene66438:CDS |
| TATAGGCGTGACGGGAATTG+TGG | 0.488302 | 1.4:+4656082 | MS.gene66438:CDS |
| TCGGAGATAATGAAGGATAA+GGG | 0.490757 | 1.4:+4657111 | MS.gene66438:CDS |
| GATCTTACCGATCGTTTCGA+AGG | 0.490896 | 1.4:-4656444 | None:intergenic |
| CCACTTGAATACATCGCCAT+TGG | 0.492618 | 1.4:-4657010 | None:intergenic |
| ATATGTGTCACATCAGTTAA+GGG | 0.499720 | 1.4:-4656269 | None:intergenic |
| TCCTGGCTCAAAAGGTGCAT+GGG | 0.501130 | 1.4:+4656891 | MS.gene66438:CDS |
| TTGAAGAAGTTGGAGATTGG+TGG | 0.501232 | 1.4:+4657186 | MS.gene66438:CDS |
| CGCCGCAATTTGCAAGCATG+AGG | 0.506185 | 1.4:+4656852 | MS.gene66438:CDS |
| GCTCAAAACTGTGAAGTTAA+CGG | 0.507082 | 1.4:+4656326 | MS.gene66438:CDS |
| GATTCGCAGTATTTGGGATG+AGG | 0.519207 | 1.4:-4656376 | None:intergenic |
| ATGACGTTCATCATGCTGTA+AGG | 0.522524 | 1.4:-4656811 | None:intergenic |
| ATAGGCGTGACGGGAATTGT+GGG | 0.523966 | 1.4:+4656083 | MS.gene66438:CDS |
| GCCACGCCATAAACCTTCCA+TGG | 0.524352 | 1.4:-4656152 | None:intergenic |
| GATATCTTGTTAGAAGAGGT+TGG | 0.530052 | 1.4:+4656539 | MS.gene66438:CDS |
| CGAAACGATCGGTAAGATCA+AGG | 0.531559 | 1.4:+4656448 | MS.gene66438:CDS |
| CGTGGCACATCCTCCGTGAA+GGG | 0.534644 | 1.4:-4656482 | None:intergenic |
| ACGACACACCAGGTGGTCCA+TGG | 0.534646 | 1.4:+4656135 | MS.gene66438:CDS |
| TCTTGTGTGTAATAGAAATT+GGG | 0.536136 | 1.4:-4656515 | None:intergenic |
| CGTTCCACGTTGGTTGTGGA+CGG | 0.541898 | 1.4:-4656178 | None:intergenic |
| TAAACCTTCCATGGACCACC+TGG | 0.546760 | 1.4:-4656143 | None:intergenic |
| GATGATTATGGATTTGAGGA+GGG | 0.546835 | 1.4:+4657072 | MS.gene66438:CDS |
| GAAGCCTTCAACTGCACCAA+TGG | 0.549227 | 1.4:+4656994 | MS.gene66438:CDS |
| CGATGATTATGGATTTGAGG+AGG | 0.550813 | 1.4:+4657071 | MS.gene66438:CDS |
| TTCCTGGCTCAAAAGGTGCA+TGG | 0.551639 | 1.4:+4656890 | MS.gene66438:CDS |
| TTAGCTAAAGCATCTGGCAC+TGG | 0.552955 | 1.4:+4655905 | MS.gene66438:CDS |
| TTATGGATTTGAGGAGGGGT+CGG | 0.555462 | 1.4:+4657077 | MS.gene66438:CDS |
| GCGTGGCACATCCTCCGTGA+AGG | 0.559630 | 1.4:-4656483 | None:intergenic |
| GCATTGATTATAGGCGTGAC+GGG | 0.559853 | 1.4:+4656074 | MS.gene66438:CDS |
| GAAGGATAAGGGTGGTGTGT+GGG | 0.559921 | 1.4:+4657122 | MS.gene66438:CDS |
| GTGTGTGGGAAGAGATTGTG+AGG | 0.564316 | 1.4:+4657136 | MS.gene66438:CDS |
| GTGCATAGTTCCTGTTTGAA+GGG | 0.565489 | 1.4:-4656411 | None:intergenic |
| ATTCGCAGTATTTGGGATGA+GGG | 0.570962 | 1.4:-4656375 | None:intergenic |
| TGGCACATCCTCCGTGAAGG+GGG | 0.571299 | 1.4:-4656480 | None:intergenic |
| ACCCTCATGCTTGCAAATTG+CGG | 0.571724 | 1.4:-4656854 | None:intergenic |
| AAGGTGAAAATCCAAAGATA+GGG | 0.571865 | 1.4:-4656792 | None:intergenic |
| TTCCTGTTTGAAGGGACACA+TGG | 0.575459 | 1.4:-4656403 | None:intergenic |
| AGAGGATATCTTGTTAGAAG+AGG | 0.580425 | 1.4:+4656535 | MS.gene66438:CDS |
| TGTGGAAGGTGTTAGCAGAA+CGG | 0.582640 | 1.4:+4657040 | MS.gene66438:CDS |
| CAAGTGGAAACATTTGTGGA+AGG | 0.585306 | 1.4:+4657026 | MS.gene66438:CDS |
| GAGGTTATCGGAGATAATGA+AGG | 0.589224 | 1.4:+4657104 | MS.gene66438:CDS |
| AGCATTGATTATAGGCGTGA+CGG | 0.590164 | 1.4:+4656073 | MS.gene66438:CDS |
| ACAACATATTTGGGGTGCAG+TGG | 0.593718 | 1.4:+4656954 | MS.gene66438:CDS |
| CAATTTCTATTACACACAAG+AGG | 0.594811 | 1.4:+4656517 | MS.gene66438:CDS |
| CCACCTGGTGTGTCGTCAAG+AGG | 0.596172 | 1.4:-4656128 | None:intergenic |
| CTAGGATCCTTCGAAACGAT+CGG | 0.596222 | 1.4:+4656437 | MS.gene66438:CDS |
| CAAGAGGAAGAATCTCTGCT+AGG | 0.603639 | 1.4:-4656112 | None:intergenic |
| TGAAGGATAAGGGTGGTGTG+TGG | 0.605479 | 1.4:+4657121 | MS.gene66438:CDS |
| ATAGCTGAACAACATATTTG+GGG | 0.609952 | 1.4:+4656946 | MS.gene66438:CDS |
| GAAAATCCAAAGATAGGGTG+TGG | 0.610721 | 1.4:-4656787 | None:intergenic |
| GTGGCACATCCTCCGTGAAG+GGG | 0.611842 | 1.4:-4656481 | None:intergenic |
| TATTTGGGATGAGGGCTCGA+AGG | 0.617902 | 1.4:-4656367 | None:intergenic |
| GCCGCAATTTGCAAGCATGA+GGG | 0.625863 | 1.4:+4656853 | MS.gene66438:CDS |
| ATGATTATGGATTTGAGGAG+GGG | 0.626346 | 1.4:+4657073 | MS.gene66438:CDS |
| CACACCAGGTGGTCCATGGA+AGG | 0.631164 | 1.4:+4656139 | MS.gene66438:CDS |
| CCAATGGCGATGTATTCAAG+TGG | 0.636788 | 1.4:+4657010 | MS.gene66438:CDS |
| AATAGAAATTGGGTGTGACA+AGG | 0.638766 | 1.4:-4656505 | None:intergenic |
| TACTTATCAGCGTTCCACGT+TGG | 0.638942 | 1.4:-4656188 | None:intergenic |
| AAATTGGGTGTGACAAGGCG+TGG | 0.639832 | 1.4:-4656500 | None:intergenic |
| ACAGGAACTATGCACTACCT+AGG | 0.648362 | 1.4:+4656419 | MS.gene66438:CDS |
| TCCATGGAAGGTTTATGGCG+TGG | 0.649148 | 1.4:+4656151 | MS.gene66438:CDS |
| GAGATAATGAAGGATAAGGG+TGG | 0.670237 | 1.4:+4657114 | MS.gene66438:CDS |
| CTCGCCGTCCACAACCAACG+TGG | 0.681033 | 1.4:+4656174 | MS.gene66438:CDS |
| CCTCTTGACGACACACCAGG+TGG | 0.689409 | 1.4:+4656128 | MS.gene66438:CDS |
| ACCCTCCAGAAGGAACGACA+TGG | 0.700672 | 1.4:+4656752 | MS.gene66438:intron |
| TGTGTGGGAAGAGATTGTGA+GGG | 0.742732 | 1.4:+4657137 | MS.gene66438:CDS |
| GTGGACCAGCATGTCCACAG+AGG | 0.762847 | 1.4:+4656304 | MS.gene66438:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTGAAAATAAAAAATAAA+GGG | - | chr1.4:4655977-4655996 | None:intergenic | 10.0% |
| !! | TACTTGAAAATAAAAAATAA+AGG | - | chr1.4:4655978-4655997 | None:intergenic | 10.0% |
| !! | CTTGAAAATAAAAAATAAAG+GGG | - | chr1.4:4655976-4655995 | None:intergenic | 15.0% |
| !! | TTGAAAATAAAAAATAAAGG+GGG | - | chr1.4:4655975-4655994 | None:intergenic | 15.0% |
| !! | TATTGAAAAACATAGAACAA+TGG | - | chr1.4:4655948-4655967 | None:intergenic | 20.0% |
| !!! | TTTAGTTTTGAATTTGAAAC+TGG | + | chr1.4:4656639-4656658 | MS.gene66438:intron | 20.0% |
| ! | AAAATAAAAAATAAAGGGGG+AGG | - | chr1.4:4655972-4655991 | None:intergenic | 25.0% |
| ! | AATAGCTGAACAACATATTT+GGG | + | chr1.4:4656945-4656964 | MS.gene66438:CDS | 25.0% |
| ! | TAATAGCTGAACAACATATT+TGG | + | chr1.4:4656944-4656963 | MS.gene66438:CDS | 25.0% |
| ! | TCTTGTGTGTAATAGAAATT+GGG | - | chr1.4:4656518-4656537 | None:intergenic | 25.0% |
| !! | CTATAATCAATGCTACATTT+TGG | - | chr1.4:4656067-4656086 | None:intergenic | 25.0% |
| !!! | CAAAATGTAGCATTGATTAT+AGG | + | chr1.4:4656065-4656084 | MS.gene66438:CDS | 25.0% |
| AAGGTGAAAATCCAAAGATA+GGG | - | chr1.4:4656795-4656814 | None:intergenic | 30.0% | |
| AAGTTAACGGTTCAATGTTA+AGG | + | chr1.4:4656339-4656358 | MS.gene66438:CDS | 30.0% | |
| AATATGTGTCACATCAGTTA+AGG | - | chr1.4:4656273-4656292 | None:intergenic | 30.0% | |
| ATAGCTGAACAACATATTTG+GGG | + | chr1.4:4656946-4656965 | MS.gene66438:CDS | 30.0% | |
| ATATGTGTCACATCAGTTAA+GGG | - | chr1.4:4656272-4656291 | None:intergenic | 30.0% | |
| CAATTTCTATTACACACAAG+AGG | + | chr1.4:4656517-4656536 | MS.gene66438:CDS | 30.0% | |
| CTCTTGTGTGTAATAGAAAT+TGG | - | chr1.4:4656519-4656538 | None:intergenic | 30.0% | |
| TAAGGTGAAAATCCAAAGAT+AGG | - | chr1.4:4656796-4656815 | None:intergenic | 30.0% | |
| TATTCAAGTGGAAACATTTG+TGG | + | chr1.4:4657022-4657041 | MS.gene66438:CDS | 30.0% | |
| AAGGCTTCATTCTTTGCATT+AGG | - | chr1.4:4656982-4657001 | None:intergenic | 35.0% | |
| AATAGAAATTGGGTGTGACA+AGG | - | chr1.4:4656508-4656527 | None:intergenic | 35.0% | |
| AGAGGATATCTTGTTAGAAG+AGG | + | chr1.4:4656535-4656554 | MS.gene66438:CDS | 35.0% | |
| ATCGGAGATAATGAAGGATA+AGG | + | chr1.4:4657110-4657129 | MS.gene66438:CDS | 35.0% | |
| ATGATTATGGATTTGAGGAG+GGG | + | chr1.4:4657073-4657092 | MS.gene66438:CDS | 35.0% | |
| GATATCTTGTTAGAAGAGGT+TGG | + | chr1.4:4656539-4656558 | MS.gene66438:CDS | 35.0% | |
| GATCGATGATTATGGATTTG+AGG | + | chr1.4:4657068-4657087 | MS.gene66438:CDS | 35.0% | |
| GATGATTATGGATTTGAGGA+GGG | + | chr1.4:4657072-4657091 | MS.gene66438:CDS | 35.0% | |
| GCTCAAAACTGTGAAGTTAA+CGG | + | chr1.4:4656326-4656345 | MS.gene66438:CDS | 35.0% | |
| TCGGAGATAATGAAGGATAA+GGG | + | chr1.4:4657111-4657130 | MS.gene66438:CDS | 35.0% | |
| TGTGCAGATTACAGAATTCA+AGG | + | chr1.4:4656025-4656044 | MS.gene66438:intron | 35.0% | |
| TTGAATTCTGTAATCTGCAC+AGG | - | chr1.4:4656026-4656045 | None:intergenic | 35.0% | |
| ! | CACATATTTTCTATGTCTCG+TGG | + | chr1.4:4656285-4656304 | MS.gene66438:CDS | 35.0% |
| AGCTTGAAGAAGTTGGAGAT+TGG | + | chr1.4:4657183-4657202 | MS.gene66438:CDS | 40.0% | |
| AGGACTCCAAAACTTCCTTA+AGG | + | chr1.4:4656701-4656720 | MS.gene66438:intron | 40.0% | |
| AGTGCATAGTTCCTGTTTGA+AGG | - | chr1.4:4656415-4656434 | None:intergenic | 40.0% | |
| ATGACGTTCATCATGCTGTA+AGG | - | chr1.4:4656814-4656833 | None:intergenic | 40.0% | |
| CAAGTGGAAACATTTGTGGA+AGG | + | chr1.4:4657026-4657045 | MS.gene66438:CDS | 40.0% | |
| CACCAAAAGCTTGAAGAAGT+TGG | + | chr1.4:4657176-4657195 | MS.gene66438:CDS | 40.0% | |
| CGATGATTATGGATTTGAGG+AGG | + | chr1.4:4657071-4657090 | MS.gene66438:CDS | 40.0% | |
| GAAAATCCAAAGATAGGGTG+TGG | - | chr1.4:4656790-4656809 | None:intergenic | 40.0% | |
| GACTCCAAAACTTCCTTAAG+GGG | + | chr1.4:4656703-4656722 | MS.gene66438:intron | 40.0% | |
| GAGATAATGAAGGATAAGGG+TGG | + | chr1.4:4657114-4657133 | MS.gene66438:CDS | 40.0% | |
| GAGGTTATCGGAGATAATGA+AGG | + | chr1.4:4657104-4657123 | MS.gene66438:CDS | 40.0% | |
| GGACTCCAAAACTTCCTTAA+GGG | + | chr1.4:4656702-4656721 | MS.gene66438:intron | 40.0% | |
| GGATCCCAGGAATATTATGA+CGG | - | chr1.4:4656666-4656685 | None:intergenic | 40.0% | |
| GGCAAAGATTCGCAGTATTT+GGG | - | chr1.4:4656385-4656404 | None:intergenic | 40.0% | |
| GTGCATAGTTCCTGTTTGAA+GGG | - | chr1.4:4656414-4656433 | None:intergenic | 40.0% | |
| TAATATTCCTGGGATCCTAG+AGG | + | chr1.4:4656669-4656688 | MS.gene66438:intron | 40.0% | |
| TACAGCATGATGAACGTCAT+TGG | + | chr1.4:4656814-4656833 | MS.gene66438:CDS | 40.0% | |
| TGGACCGTCATAATATTCCT+GGG | + | chr1.4:4656659-4656678 | MS.gene66438:intron | 40.0% | |
| TGGCAAAGATTCGCAGTATT+TGG | - | chr1.4:4656386-4656405 | None:intergenic | 40.0% | |
| TTAAGGTTTCCTGGCTCAAA+AGG | + | chr1.4:4656883-4656902 | MS.gene66438:CDS | 40.0% | |
| TTGAAGAAGTTGGAGATTGG+TGG | + | chr1.4:4657186-4657205 | MS.gene66438:CDS | 40.0% | |
| TTTGAGCCAGGAAACCTTAA+AGG | - | chr1.4:4656883-4656902 | None:intergenic | 40.0% | |
| ! | ATTCGCAGTATTTGGGATGA+GGG | - | chr1.4:4656378-4656397 | None:intergenic | 40.0% |
| ! | CGGTTTGAGATCGATGATTA+TGG | + | chr1.4:4657060-4657079 | MS.gene66438:CDS | 40.0% |
| ! | CTCCAACTTCTTCAAGCTTT+TGG | - | chr1.4:4657181-4657200 | None:intergenic | 40.0% |
| ! | GCTTCAATTCGACGTCTTTT+TGG | - | chr1.4:4656244-4656263 | None:intergenic | 40.0% |
| !! | AGCATTGATTATAGGCGTGA+CGG | + | chr1.4:4656073-4656092 | MS.gene66438:CDS | 40.0% |
| !! | GCTACATTTTGGAAGCTTTG+TGG | - | chr1.4:4656056-4656075 | None:intergenic | 40.0% |
| AATCGACCACACCCTATCTT+TGG | + | chr1.4:4656781-4656800 | MS.gene66438:CDS | 45.0% | |
| ACAGGAACTATGCACTACCT+AGG | + | chr1.4:4656419-4656438 | MS.gene66438:CDS | 45.0% | |
| ACCCTCATGCTTGCAAATTG+CGG | - | chr1.4:4656857-4656876 | None:intergenic | 45.0% | |
| AGCATGAGGGTCTTCCTTTA+AGG | + | chr1.4:4656866-4656885 | MS.gene66438:CDS | 45.0% | |
| ATGAACCATGTCGTTCCTTC+TGG | - | chr1.4:4656760-4656779 | None:intergenic | 45.0% | |
| CAAGAGGAAGAATCTCTGCT+AGG | - | chr1.4:4656115-4656134 | None:intergenic | 45.0% | |
| CCAATGGCGATGTATTCAAG+TGG | + | chr1.4:4657010-4657029 | MS.gene66438:CDS | 45.0% | |
| CCACTTGAATACATCGCCAT+TGG | - | chr1.4:4657013-4657032 | None:intergenic | 45.0% | |
| CGAAACGATCGGTAAGATCA+AGG | + | chr1.4:4656448-4656467 | MS.gene66438:CDS | 45.0% | |
| CTAGGATCCTTCGAAACGAT+CGG | + | chr1.4:4656437-4656456 | MS.gene66438:CDS | 45.0% | |
| CTGGACCGTCATAATATTCC+TGG | + | chr1.4:4656658-4656677 | MS.gene66438:intron | 45.0% | |
| GATCTTACCGATCGTTTCGA+AGG | - | chr1.4:4656447-4656466 | None:intergenic | 45.0% | |
| TACTTATCAGCGTTCCACGT+TGG | - | chr1.4:4656191-4656210 | None:intergenic | 45.0% | |
| TGTGTGGGAAGAGATTGTGA+GGG | + | chr1.4:4657137-4657156 | MS.gene66438:CDS | 45.0% | |
| TTATGGATTTGAGGAGGGGT+CGG | + | chr1.4:4657077-4657096 | MS.gene66438:CDS | 45.0% | |
| TTCCTGTTTGAAGGGACACA+TGG | - | chr1.4:4656406-4656425 | None:intergenic | 45.0% | |
| ! | ACAACATATTTGGGGTGCAG+TGG | + | chr1.4:4656954-4656973 | MS.gene66438:CDS | 45.0% |
| ! | GATTCGCAGTATTTGGGATG+AGG | - | chr1.4:4656379-4656398 | None:intergenic | 45.0% |
| ! | TACGCCCCTTAAGGAAGTTT+TGG | - | chr1.4:4656710-4656729 | None:intergenic | 45.0% |
| ! | TGCTGGTTAGCTAAAGCATC+TGG | + | chr1.4:4655899-4655918 | MS.gene66438:CDS | 45.0% |
| ! | TTAGCTAAAGCATCTGGCAC+TGG | + | chr1.4:4655905-4655924 | MS.gene66438:CDS | 45.0% |
| !! | GCATTGATTATAGGCGTGAC+GGG | + | chr1.4:4656074-4656093 | MS.gene66438:CDS | 45.0% |
| !! | GGTCTTCCTTTAAGGTTTCC+TGG | + | chr1.4:4656874-4656893 | MS.gene66438:CDS | 45.0% |
| !! | TGTGGAAGGTGTTAGCAGAA+CGG | + | chr1.4:4657040-4657059 | MS.gene66438:CDS | 45.0% |
| !!! | AAGTTTTGGAGTCCTTCTGG+AGG | - | chr1.4:4656696-4656715 | None:intergenic | 45.0% |
| !!! | AGGAAGTTTTGGAGTCCTTC+TGG | - | chr1.4:4656699-4656718 | None:intergenic | 45.0% |
| !!! | TTCACAGTTTTGAGCCTCTG+TGG | - | chr1.4:4656321-4656340 | None:intergenic | 45.0% |
| AAATTGGGTGTGACAAGGCG+TGG | - | chr1.4:4656503-4656522 | None:intergenic | 50.0% | |
| AACCATGTCGTTCCTTCTGG+AGG | - | chr1.4:4656757-4656776 | None:intergenic | 50.0% | |
| ACCATGTCGTTCCTTCTGGA+GGG | - | chr1.4:4656756-4656775 | None:intergenic | 50.0% | |
| ATCGCCATTGGTGCAGTTGA+AGG | - | chr1.4:4657001-4657020 | None:intergenic | 50.0% | |
| CGATCGTTTCGAAGGATCCT+AGG | - | chr1.4:4656439-4656458 | None:intergenic | 50.0% | |
| GAAGCCTTCAACTGCACCAA+TGG | + | chr1.4:4656994-4657013 | MS.gene66438:CDS | 50.0% | |
| GAAGGATAAGGGTGGTGTGT+GGG | + | chr1.4:4657122-4657141 | MS.gene66438:CDS | 50.0% | |
| GCCGCAATTTGCAAGCATGA+GGG | + | chr1.4:4656853-4656872 | MS.gene66438:CDS | 50.0% | |
| GGTGGTCCATGGAAGGTTTA+TGG | + | chr1.4:4656146-4656165 | MS.gene66438:CDS | 50.0% | |
| GTGTGTGGGAAGAGATTGTG+AGG | + | chr1.4:4657136-4657155 | MS.gene66438:CDS | 50.0% | |
| TAAACCTTCCATGGACCACC+TGG | - | chr1.4:4656146-4656165 | None:intergenic | 50.0% | |
| TCCATGGAAGGTTTATGGCG+TGG | + | chr1.4:4656151-4656170 | MS.gene66438:CDS | 50.0% | |
| TGAAGGATAAGGGTGGTGTG+TGG | + | chr1.4:4657121-4657140 | MS.gene66438:CDS | 50.0% | |
| TGCCATGTGTCCCTTCAAAC+AGG | + | chr1.4:4656401-4656420 | MS.gene66438:CDS | 50.0% | |
| ! | ATAGGCGTGACGGGAATTGT+GGG | + | chr1.4:4656083-4656102 | MS.gene66438:CDS | 50.0% |
| ! | TATAGGCGTGACGGGAATTG+TGG | + | chr1.4:4656082-4656101 | MS.gene66438:CDS | 50.0% |
| ! | TATTTGGGATGAGGGCTCGA+AGG | - | chr1.4:4656370-4656389 | None:intergenic | 50.0% |
| ! | TCCTGGCTCAAAAGGTGCAT+GGG | + | chr1.4:4656891-4656910 | MS.gene66438:CDS | 50.0% |
| ! | TTCCTGGCTCAAAAGGTGCA+TGG | + | chr1.4:4656890-4656909 | MS.gene66438:CDS | 50.0% |
| ACCCTCCAGAAGGAACGACA+TGG | + | chr1.4:4656752-4656771 | MS.gene66438:intron | 55.0% | |
| CGCCGCAATTTGCAAGCATG+AGG | + | chr1.4:4656852-4656871 | MS.gene66438:CDS | 55.0% | |
| CTTCCTCTTGACGACACACC+AGG | + | chr1.4:4656125-4656144 | MS.gene66438:CDS | 55.0% | |
| GATCCTAGAGGACCTCCAGA+AGG | + | chr1.4:4656681-4656700 | MS.gene66438:intron | 55.0% | |
| GCCACGCCATAAACCTTCCA+TGG | - | chr1.4:4656155-4656174 | None:intergenic | 55.0% | |
| GGGGTCGGAGTTGAGGTTAT+CGG | + | chr1.4:4657092-4657111 | MS.gene66438:CDS | 55.0% | |
| TTGAGCCTCTGTGGACATGC+TGG | - | chr1.4:4656312-4656331 | None:intergenic | 55.0% | |
| ! | AGTCCTTCTGGAGGTCCTCT+AGG | - | chr1.4:4656687-4656706 | None:intergenic | 55.0% |
| ! | CGTTCCACGTTGGTTGTGGA+CGG | - | chr1.4:4656181-4656200 | None:intergenic | 55.0% |
| ! | TAGAGCCTCCAGAAGGGCAT+GGG | + | chr1.4:4656728-4656747 | MS.gene66438:intron | 55.0% |
| ! | TCAGCGTTCCACGTTGGTTG+TGG | - | chr1.4:4656185-4656204 | None:intergenic | 55.0% |
| ! | TCCCATGCACCTTTTGAGCC+AGG | - | chr1.4:4656895-4656914 | None:intergenic | 55.0% |
| ACGACACACCAGGTGGTCCA+TGG | + | chr1.4:4656135-4656154 | MS.gene66438:CDS | 60.0% | |
| CACACCAGGTGGTCCATGGA+AGG | + | chr1.4:4656139-4656158 | MS.gene66438:CDS | 60.0% | |
| CCACCTGGTGTGTCGTCAAG+AGG | - | chr1.4:4656131-4656150 | None:intergenic | 60.0% | |
| CCTCTTGACGACACACCAGG+TGG | + | chr1.4:4656128-4656147 | MS.gene66438:CDS | 60.0% | |
| CGTGGCACATCCTCCGTGAA+GGG | - | chr1.4:4656485-4656504 | None:intergenic | 60.0% | |
| CTCCGTGAAGGGGGACTCAT+GGG | - | chr1.4:4656474-4656493 | None:intergenic | 60.0% | |
| GTAGAGCCTCCAGAAGGGCA+TGG | + | chr1.4:4656727-4656746 | MS.gene66438:intron | 60.0% | |
| GTGGACCAGCATGTCCACAG+AGG | + | chr1.4:4656304-4656323 | MS.gene66438:CDS | 60.0% | |
| GTGGCACATCCTCCGTGAAG+GGG | - | chr1.4:4656484-4656503 | None:intergenic | 60.0% | |
| TGGAGGCTCTACGCCCCTTA+AGG | - | chr1.4:4656719-4656738 | None:intergenic | 60.0% | |
| TGGCACATCCTCCGTGAAGG+GGG | - | chr1.4:4656483-4656502 | None:intergenic | 60.0% | |
| TTGAGGAGGGGTCGGAGTTG+AGG | + | chr1.4:4657085-4657104 | MS.gene66438:CDS | 60.0% | |
| !! | TGGAGGTCCTCTAGGATCCC+AGG | - | chr1.4:4656679-4656698 | None:intergenic | 60.0% |
| CCATGAGTCCCCCTTCACGG+AGG | + | chr1.4:4656472-4656491 | MS.gene66438:CDS | 65.0% | |
| CCTCCGTGAAGGGGGACTCA+TGG | - | chr1.4:4656475-4656494 | None:intergenic | 65.0% | |
| CTCGCCGTCCACAACCAACG+TGG | + | chr1.4:4656174-4656193 | MS.gene66438:CDS | 65.0% | |
| GCGTGGCACATCCTCCGTGA+AGG | - | chr1.4:4656486-4656505 | None:intergenic | 65.0% | |
| GGCCCATGAGTCCCCCTTCA+CGG | + | chr1.4:4656469-4656488 | MS.gene66438:CDS | 65.0% | |
| GGGGCGTAGAGCCTCCAGAA+GGG | + | chr1.4:4656722-4656741 | MS.gene66438:intron | 65.0% | |
| ! | AGGGGCGTAGAGCCTCCAGA+AGG | + | chr1.4:4656721-4656740 | MS.gene66438:intron | 65.0% |
| GGGCATGGGCACCCTCCAGA+AGG | + | chr1.4:4656742-4656761 | MS.gene66438:intron | 70.0% | |
| GGGTGCCCATGCCCTTCTGG+AGG | - | chr1.4:4656736-4656755 | None:intergenic | 70.0% | |
| !! | GGAGGGTGCCCATGCCCTTC+TGG | - | chr1.4:4656739-4656758 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 4655893 | 4657227 | 4655893 | ID=MS.gene66438 |
| chr1.4 | mRNA | 4655893 | 4657227 | 4655893 | ID=MS.gene66438.t1;Parent=MS.gene66438 |
| chr1.4 | exon | 4655893 | 4655935 | 4655893 | ID=MS.gene66438.t1.exon1;Parent=MS.gene66438.t1 |
| chr1.4 | CDS | 4655893 | 4655935 | 4655893 | ID=cds.MS.gene66438.t1;Parent=MS.gene66438.t1 |
| chr1.4 | exon | 4656039 | 4656560 | 4656039 | ID=MS.gene66438.t1.exon2;Parent=MS.gene66438.t1 |
| chr1.4 | CDS | 4656039 | 4656560 | 4656039 | ID=cds.MS.gene66438.t1;Parent=MS.gene66438.t1 |
| chr1.4 | exon | 4656761 | 4657227 | 4656761 | ID=MS.gene66438.t1.exon3;Parent=MS.gene66438.t1 |
| chr1.4 | CDS | 4656761 | 4657227 | 4656761 | ID=cds.MS.gene66438.t1;Parent=MS.gene66438.t1 |
| Gene Sequence |
| Protein sequence |
