AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062839


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062839.t1 MTR_2g070420 98.656 372 5 0 1 372 1 372 0.0 751
MS.gene062839.t1 MTR_1g072440 59.091 88 28 3 10 94 4 86 2.32e-27 103
MS.gene062839.t1 MTR_3g076640 48.649 74 35 2 4 76 4 75 7.35e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062839.t1 AT3G14420 89.315 365 39 0 3 367 2 366 0.0 666
MS.gene062839.t1 AT3G14420 89.315 365 39 0 3 367 2 366 0.0 666
MS.gene062839.t1 AT3G14420 89.041 365 40 0 3 367 2 366 0.0 663
MS.gene062839.t1 AT3G14415 88.767 365 41 0 3 367 2 366 0.0 663
MS.gene062839.t1 AT3G14415 88.767 365 41 0 3 367 2 366 0.0 663
MS.gene062839.t1 AT3G14415 87.332 371 41 1 3 367 2 372 0.0 657
MS.gene062839.t1 AT4G18360 85.596 361 52 0 3 363 2 362 0.0 651
MS.gene062839.t1 AT4G18360 85.596 361 52 0 3 363 2 362 0.0 651
MS.gene062839.t1 AT3G14420 90.202 347 34 0 21 367 1 347 0.0 635
MS.gene062839.t1 AT3G14420 90.625 320 30 0 48 367 40 359 0.0 585
MS.gene062839.t1 AT3G14420 90.625 320 30 0 48 367 46 365 0.0 583
MS.gene062839.t1 AT4G18360 84.665 313 48 0 3 315 2 314 0.0 558
MS.gene062839.t1 AT3G14130 61.972 355 132 1 1 355 1 352 7.64e-163 460
MS.gene062839.t1 AT3G14130 61.972 355 132 1 1 355 1 352 7.64e-163 460
MS.gene062839.t1 AT3G14150 60.845 355 136 1 1 355 1 352 6.28e-160 453
MS.gene062839.t1 AT3G14150 60.845 355 136 1 1 355 1 352 6.28e-160 453
MS.gene062839.t1 AT4G18360 85.714 238 34 0 3 240 2 239 5.47e-153 431
MS.gene062839.t1 AT3G14130 63.312 308 110 1 48 355 4 308 2.95e-140 401
MS.gene062839.t1 AT3G14150 60.300 267 103 1 89 355 3 266 3.94e-112 328
MS.gene062839.t1 AT3G14150 60.300 267 103 1 89 355 3 266 3.94e-112 328
MS.gene062839.t1 AT3G14150 60.300 267 103 1 89 355 3 266 3.94e-112 328
MS.gene062839.t1 AT3G14130 62.602 246 89 1 110 355 2 244 8.32e-112 327
MS.gene062839.t1 AT3G14150 60.569 246 94 1 110 355 2 244 8.84e-109 319
MS.gene062839.t1 AT3G14150 60.569 246 94 1 110 355 2 244 8.84e-109 319

Find 78 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGAAATCTTACAAAATTT+TGG 0.098632 2.4:+25051576 None:intergenic
TTCTTAAAGTACCTCTTCTA+AGG 0.314628 2.4:+25048604 None:intergenic
TTCCTCATACTCGCTGATAT+TGG 0.319334 2.4:+25051693 None:intergenic
TACCTCTTCTAAGGCACTTA+TGG 0.332153 2.4:+25048613 None:intergenic
GCTTTGGCACTTGGTGCCTC+TGG 0.345429 2.4:-25048415 MS.gene062839:CDS
GTCTTCAAGGCTTTGGCACT+TGG 0.349066 2.4:-25048424 MS.gene062839:CDS
GGACTTGCTTCATATGTTGC+TGG 0.352126 2.4:-25049190 MS.gene062839:CDS
AGTACACCCTTCACAAGAAT+TGG 0.361205 2.4:+25048936 None:intergenic
TAGTAGTCAAACGCCATCTT+TGG 0.400379 2.4:+25051652 None:intergenic
AACCGATGTCTTCAAGGCTT+TGG 0.403047 2.4:-25048431 MS.gene062839:CDS
TGATCACATTGTTGCTGATT+GGG 0.416794 2.4:-25047748 MS.gene062839:CDS
CCGTGGAACCGATGTCTTCA+AGG 0.420956 2.4:-25048437 MS.gene062839:CDS
GCAAGAGCTGCATCAGCTGC+TGG 0.425139 2.4:-25050499 MS.gene062839:CDS
GCTTCTCTGCGTCCAAGTCT+TGG 0.429282 2.4:+25049832 None:intergenic
ACTCATCACGTAACATTTGA+AGG 0.447093 2.4:+25047823 None:intergenic
TCTTTCAGACATTGTCATCA+TGG 0.448736 2.4:-25050097 MS.gene062839:intron
GTGATCACATTGTTGCTGAT+TGG 0.453243 2.4:-25047749 MS.gene062839:CDS
AACCAATATCAGCGAGTATG+AGG 0.457219 2.4:-25051695 MS.gene062839:CDS
TCCATTTAGGCTAATGACTC+TGG 0.458314 2.4:-25049211 MS.gene062839:intron
GTGTATTCTCTGGCTGCTGA+TGG 0.460684 2.4:-25047867 MS.gene062839:CDS
GCGTTTGACTACTATGCATC+TGG 0.462223 2.4:-25051643 MS.gene062839:CDS
GCAGTTGGAGCAATCATGAT+TGG 0.471140 2.4:+25051342 None:intergenic
CTTTCAGACATTGTCATCAT+GGG 0.471894 2.4:-25050096 MS.gene062839:intron
TTATTTAGGTGTACAAGGAC+AGG 0.473436 2.4:-25049927 MS.gene062839:intron
CTGGCTGCTGATGGAGAAGC+TGG 0.478038 2.4:-25047858 MS.gene062839:CDS
GCAGTGCAAAGTGGTGCAGC+TGG 0.480581 2.4:-25048686 MS.gene062839:CDS
GAAGTTGCTTCCACTGGACC+TGG 0.482888 2.4:-25050056 MS.gene062839:CDS
GTCGAAGAAGTTGCTTCCAC+TGG 0.490758 2.4:-25050062 MS.gene062839:CDS
GTCTTGGAGTATCAACAGTA+AGG 0.491873 2.4:+25049848 None:intergenic
GAGTTAACAATGGCTTTAAG+TGG 0.494236 2.4:-25047798 MS.gene062839:CDS
TCTAAGGCACTTATGGTGGC+TGG 0.495998 2.4:+25048620 None:intergenic
GTTCTTTATTTAGGTGTACA+AGG 0.502004 2.4:-25049932 MS.gene062839:intron
AGGACTGAACCTTGGAAAGA+TGG 0.503842 2.4:-25049319 MS.gene062839:CDS
GACATGTCAACTACTGTCCT+TGG 0.511523 2.4:-25051381 MS.gene062839:CDS
CAGCCTTCCAATTCTTGTGA+AGG 0.516162 2.4:-25048943 MS.gene062839:CDS
GAGAAGCTGATATCAAGAAC+AGG 0.524863 2.4:-25049816 MS.gene062839:intron
ATCAGCTGCTGGAACAATCA+TGG 0.526902 2.4:-25050488 MS.gene062839:intron
AAATTGATCGTACTCTGAGC+TGG 0.527284 2.4:-25049165 MS.gene062839:CDS
ACGCCCTGTGGTGTATTCTC+TGG 0.532490 2.4:-25047877 MS.gene062839:CDS
CATAATCTTGGTATGGCACG+AGG 0.535981 2.4:+25047708 None:intergenic
TTACTTCGTCCATCTTTCCA+AGG 0.537036 2.4:+25049310 None:intergenic
CTCACATCGATAAGAATTCG+CGG 0.537846 2.4:+25051411 None:intergenic
CTCTTCTAAGGCACTTATGG+TGG 0.542151 2.4:+25048616 None:intergenic
TGGAGAAGCTGGTGTAAGAA+AGG 0.545364 2.4:-25047847 MS.gene062839:CDS
AAGGCAGAAATTGCCAAAGA+TGG 0.545523 2.4:-25051665 MS.gene062839:CDS
CTTCACAAGAATTGGAAGGC+TGG 0.548322 2.4:+25048944 None:intergenic
AAGTTGTCTTGCACCATGGT+TGG 0.548472 2.4:+25048652 None:intergenic
AGCCTTCCAATTCTTGTGAA+GGG 0.552515 2.4:-25048942 MS.gene062839:CDS
AAGTGGATGCCGCTCGCTCA+AGG 0.552735 2.4:-25047781 MS.gene062839:CDS
CAGAAAATGGCTCATCCCGA+GGG 0.557082 2.4:-25051315 MS.gene062839:intron
TCAGAAAATGGCTCATCCCG+AGG 0.565352 2.4:-25051316 MS.gene062839:CDS
CACCATAAGTGCCTTAGAAG+AGG 0.567394 2.4:-25048615 MS.gene062839:intron
CCTTGAAGACATCGGTTCCA+CGG 0.578507 2.4:+25048437 None:intergenic
GCAAGGCTAGCAGTGCAAAG+TGG 0.582697 2.4:-25048695 MS.gene062839:CDS
AATCAAGTTGTCTTGCACCA+TGG 0.587374 2.4:+25048648 None:intergenic
CATCTGGTGCTGAGGACCAG+TGG 0.600366 2.4:-25051627 MS.gene062839:CDS
TGGAGCAATCATGATTGGCA+TGG 0.601089 2.4:+25051347 None:intergenic
CTACTATGCATCTGGTGCTG+AGG 0.603217 2.4:-25051635 MS.gene062839:CDS
TAGGTTGTGAAAGCTGCTCA+AGG 0.605864 2.4:-25048493 MS.gene062839:CDS
ACTGTTGATACTCCAAGACT+TGG 0.606482 2.4:-25049844 MS.gene062839:CDS
GCAGCCAGAGAATACACCAC+AGG 0.615884 2.4:+25047873 None:intergenic
TCTTGGAGTATCAACAGTAA+GGG 0.618142 2.4:+25049849 None:intergenic
TGATGAGTTTGAGTTAACAA+TGG 0.619751 2.4:-25047808 MS.gene062839:CDS
GAGTGATTTCCTTGAGCGAG+CGG 0.625311 2.4:+25047772 None:intergenic
TGATCGTACTCTGAGCTGGA+AGG 0.628034 2.4:-25049161 MS.gene062839:intron
AAAGCGGATTCCAGGTCCAG+TGG 0.630109 2.4:+25050046 None:intergenic
TGGCACGAGGATTAACGCGA+GGG 0.630279 2.4:+25047721 None:intergenic
CACCCTTCACAAGAATTGGA+AGG 0.648050 2.4:+25048940 None:intergenic
TTGGATGGAGGTGTACGCCG+TGG 0.653698 2.4:-25048454 MS.gene062839:CDS
CAGCCAGAGAATACACCACA+GGG 0.658781 2.4:+25047874 None:intergenic
GGAATTATTGTGTCCAACCA+TGG 0.661929 2.4:-25048665 MS.gene062839:CDS
TGCCAAAGCCTTGAAGACAT+CGG 0.666124 2.4:+25048429 None:intergenic
ATGGCACGAGGATTAACGCG+AGG 0.666225 2.4:+25047720 None:intergenic
GCGAGTATGAGGAAATTGCA+AGG 0.668905 2.4:-25051684 MS.gene062839:CDS
TGTCTAGATTGGACGCCCTG+TGG 0.692710 2.4:-25047889 MS.gene062839:intron
GGCACGAGGATTAACGCGAG+GGG 0.702076 2.4:+25047722 None:intergenic
TATACTCACAAATATGCCAG+AGG 0.718024 2.4:+25048399 None:intergenic
GAAGGGTGTACTCACTGCTG+AGG 0.727281 2.4:-25048925 MS.gene062839:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATTATATTAATTATAG+AGG + chr2.4:25050175-25050194 None:intergenic 10.0%
!! TTAGTAATAATTTCTTAATT+TGG - chr2.4:25051077-25051096 MS.gene062839:intron 10.0%
!! AAATTAGTAACATAGTTTAA+TGG - chr2.4:25050144-25050163 MS.gene062839:intron 15.0%
!! AATTAATATAATTGTTACCT+TGG - chr2.4:25050179-25050198 MS.gene062839:intron 15.0%
!! CAAATGTTTATTACAAAAAT+AGG + chr2.4:25048961-25048980 None:intergenic 15.0%
!! CATAATAAAGTAACATAATT+TGG + chr2.4:25047890-25047909 None:intergenic 15.0%
!! TCAAACCATTAATAAATATT+CGG + chr2.4:25050685-25050704 None:intergenic 15.0%
!! TTAAGAAATTATTACTAATG+AGG + chr2.4:25051075-25051094 None:intergenic 15.0%
!!! TATGAAATCTTACAAAATTT+TGG + chr2.4:25047840-25047859 None:intergenic 15.0%
!!! TTTTTCCGAATATTTATTAA+TGG - chr2.4:25050677-25050696 MS.gene062839:intron 15.0%
!! AAATTCTTCAATGTCAAAAA+TGG + chr2.4:25050071-25050090 None:intergenic 20.0%
!! AATTAATTGAAGAAGTAATG+AGG + chr2.4:25049209-25049228 None:intergenic 20.0%
!! TATTAAGAAAACACTACAAT+AGG - chr2.4:25048776-25048795 MS.gene062839:intron 20.0%
!! TATTAATAGAATTCTCAAAC+AGG + chr2.4:25050532-25050551 None:intergenic 20.0%
!!! ATCTTACAAAATTTTGGAAA+AGG + chr2.4:25047834-25047853 None:intergenic 20.0%
!!! GGAAAAAGTGTTAAATATAA+CGG + chr2.4:25050583-25050602 None:intergenic 20.0%
!!! TAATTTGTTCGTTAAGATAA+CGG + chr2.4:25051499-25051518 None:intergenic 20.0%
!!! TATTGATAACTTGATCAATA+AGG - chr2.4:25049729-25049748 MS.gene062839:intron 20.0%
! AAATTATGCAATGTCTAGAT+TGG - chr2.4:25051513-25051532 MS.gene062839:intron 25.0%
! AACTCAAAATCTAAGCATAT+TGG + chr2.4:25049990-25050009 None:intergenic 25.0%
! ATGGATAAAAACAAACTCAA+TGG - chr2.4:25048748-25048767 MS.gene062839:intron 25.0%
! CAAAAACAACACTAAATCAT+TGG + chr2.4:25050410-25050429 None:intergenic 25.0%
! CAATACAGAACATATAACAA+TGG + chr2.4:25049456-25049475 None:intergenic 25.0%
! CAATGAGCATGTAATATATT+GGG + chr2.4:25051052-25051071 None:intergenic 25.0%
! CATTGTTATATGTTCTGTAT+TGG - chr2.4:25049454-25049473 MS.gene062839:intron 25.0%
! CTTTAAATTCACTTGGATTT+CGG - chr2.4:25048135-25048154 MS.gene062839:intron 25.0%
! GAAAATAGCTTATTACATGT+CGG - chr2.4:25049153-25049172 MS.gene062839:intron 25.0%
! TATAGCTAATACTAGTGTAT+TGG + chr2.4:25050604-25050623 None:intergenic 25.0%
! TCAAACGAATTTGATAAAGT+TGG + chr2.4:25051197-25051216 None:intergenic 25.0%
! TGAAAAGGAAAAACATAACA+AGG - chr2.4:25049825-25049844 MS.gene062839:CDS 25.0%
! TGTTAATGTGCTGAAAAATA+TGG - chr2.4:25047956-25047975 MS.gene062839:intron 25.0%
! TTAATCTAACAGAGTTAGTT+AGG + chr2.4:25049859-25049878 None:intergenic 25.0%
! TTGTCTTCTATAATATATGG+AGG - chr2.4:25051420-25051439 MS.gene062839:CDS 25.0%
!! ACAAAAGAAAACACTACTTT+TGG - chr2.4:25050346-25050365 MS.gene062839:intron 25.0%
!! ACATGATAGTGTAATTTGAT+TGG - chr2.4:25049084-25049103 MS.gene062839:intron 25.0%
!! ATTCTGTTCATTTTGTTAGA+AGG - chr2.4:25048192-25048211 MS.gene062839:intron 25.0%
!! CATTGTGTTTAAGATTAACA+GGG + chr2.4:25051295-25051314 None:intergenic 25.0%
!! GTAACATAATTTGGTAACTT+AGG + chr2.4:25047881-25047900 None:intergenic 25.0%
!! TTCTGTTCATTTTGTTAGAA+GGG - chr2.4:25048193-25048212 MS.gene062839:intron 25.0%
!! TTGACATTGAAGAATTTTGA+AGG - chr2.4:25050074-25050093 MS.gene062839:CDS 25.0%
!! TTTTTGCATAGCACAATATT+TGG - chr2.4:25049123-25049142 MS.gene062839:intron 25.0%
!!! AGCATATTGGTTTTTGAAAA+AGG + chr2.4:25049977-25049996 None:intergenic 25.0%
!!! GCTTTTTCTTTAAATTCACT+TGG - chr2.4:25048128-25048147 MS.gene062839:intron 25.0%
!!! GTCATTTTTAGTCTACATAA+TGG - chr2.4:25050371-25050390 MS.gene062839:intron 25.0%
!!! TCTACATAATGGAATTTTCA+AGG - chr2.4:25050382-25050401 MS.gene062839:intron 25.0%
!!! TGTTTTTGTTAATTTTGTGC+AGG - chr2.4:25050422-25050441 MS.gene062839:intron 25.0%
!!! TTTGATAAAGTTGGCTTTTA+AGG + chr2.4:25051188-25051207 None:intergenic 25.0%
ACATACGAGTTCATATGAAA+AGG - chr2.4:25049810-25049829 MS.gene062839:intron 30.0%
ACATGTCACTAAACACAAAA+GGG + chr2.4:25048860-25048879 None:intergenic 30.0%
AGAAAAAGCAATTATACCCT+CGG + chr2.4:25048117-25048136 None:intergenic 30.0%
AGAAGTGATTACAATACTCT+AGG - chr2.4:25050649-25050668 MS.gene062839:intron 30.0%
ATAGCATGTAAGTATCAAGA+AGG + chr2.4:25048278-25048297 None:intergenic 30.0%
ATATGGTTGACAAACATTAC+AGG - chr2.4:25047973-25047992 MS.gene062839:intron 30.0%
ATATTTACATGAGTCTGATG+CGG - chr2.4:25049665-25049684 MS.gene062839:intron 30.0%
ATCTCTGCAAATATCTACAT+GGG + chr2.4:25049038-25049057 None:intergenic 30.0%
CCTGTTAATCTTAAACACAA+TGG - chr2.4:25051293-25051312 MS.gene062839:intron 30.0%
CGCTTGTCTTCTATAATATA+TGG - chr2.4:25051417-25051436 MS.gene062839:CDS 30.0%
CGTCGTAATAAAAGTTTGAT+CGG + chr2.4:25051399-25051418 None:intergenic 30.0%
CTGAATTCATAATTCTTGAG+TGG - chr2.4:25051253-25051272 MS.gene062839:intron 30.0%
GCAATGAGCATGTAATATAT+TGG + chr2.4:25051053-25051072 None:intergenic 30.0%
GTACAAAACGATAATTGAGA+CGG - chr2.4:25048359-25048378 MS.gene062839:intron 30.0%
GTACACCTAAATAAAGAACA+TGG + chr2.4:25049480-25049499 None:intergenic 30.0%
GTCGTAATAAAAGTTTGATC+GGG + chr2.4:25051398-25051417 None:intergenic 30.0%
TACATGTCACTAAACACAAA+AGG + chr2.4:25048861-25048880 None:intergenic 30.0%
TAGCATGTAAGTATCAAGAA+GGG + chr2.4:25048277-25048296 None:intergenic 30.0%
TCAAACTGTTTATCCAAACA+AGG - chr2.4:25048590-25048609 MS.gene062839:intron 30.0%
TCACATATAACTGGAAAAAG+CGG + chr2.4:25049386-25049405 None:intergenic 30.0%
TGTTATAGTGATTGCAATTG+TGG + chr2.4:25049691-25049710 None:intergenic 30.0%
TTCTTCAATGTCAAAAATGG+TGG + chr2.4:25050068-25050087 None:intergenic 30.0%
TTGACAAACATTACAGGTTT+AGG - chr2.4:25047979-25047998 MS.gene062839:intron 30.0%
! ATTGGCCATGTTCTTTATTT+AGG - chr2.4:25049472-25049491 MS.gene062839:intron 30.0%
! CCATTGTGTTTAAGATTAAC+AGG + chr2.4:25051296-25051315 None:intergenic 30.0%
! CCTGCAACATCAAAATTTTT+AGG + chr2.4:25049935-25049954 None:intergenic 30.0%
! GTTCTTTATTTAGGTGTACA+AGG - chr2.4:25049481-25049500 MS.gene062839:intron 30.0%
! TGATGAGTTTGAGTTAACAA+TGG - chr2.4:25051605-25051624 MS.gene062839:CDS 30.0%
! TTCTTAAAGTACCTCTTCTA+AGG + chr2.4:25050812-25050831 None:intergenic 30.0%
! TTCTTAATTTGGATCGTCTA+TGG - chr2.4:25051088-25051107 MS.gene062839:intron 30.0%
! TTGATGTAAATTTTGCAGCA+AGG - chr2.4:25050701-25050720 MS.gene062839:intron 30.0%
! TTGTGTTGTTGACATTACTT+AGG - chr2.4:25050901-25050920 MS.gene062839:intron 30.0%
! TTTTGTTGCTCACATATAAC+TGG + chr2.4:25049395-25049414 None:intergenic 30.0%
!! CCTAAAAATTTTGATGTTGC+AGG - chr2.4:25049932-25049951 MS.gene062839:intron 30.0%
!!! AAGCTACATTTTGAAGCTTA+TGG + chr2.4:25048455-25048474 None:intergenic 30.0%
!!! CATCTGCTAGTTTTGATAAA+TGG - chr2.4:25048729-25048748 MS.gene062839:intron 30.0%
!!! GTACAATTTTTTTCTTGTGC+AGG - chr2.4:25048878-25048897 MS.gene062839:intron 30.0%
AACGAATTGAGCGAACAAAT+TGG + chr2.4:25050285-25050304 None:intergenic 35.0%
ACTCATCACGTAACATTTGA+AGG + chr2.4:25051593-25051612 None:intergenic 35.0%
ATCATGCATGACATGAATTG+TGG - chr2.4:25048232-25048251 MS.gene062839:intron 35.0%
ATTCACTTGGATTTCGGAAA+TGG - chr2.4:25048141-25048160 MS.gene062839:intron 35.0%
ATTGTTACCTTGGTCCATTT+AGG - chr2.4:25050189-25050208 MS.gene062839:intron 35.0%
CATCAACAACTATGGTAACT+TGG - chr2.4:25048622-25048641 MS.gene062839:CDS 35.0%
CATCTCTGCAAATATCTACA+TGG + chr2.4:25049039-25049058 None:intergenic 35.0%
CATGTCACTAAACACAAAAG+GGG + chr2.4:25048859-25048878 None:intergenic 35.0%
CATTCATGTAGTTAACGGTT+TGG - chr2.4:25051125-25051144 MS.gene062839:intron 35.0%
CTTTCAGACATTGTCATCAT+GGG - chr2.4:25049317-25049336 MS.gene062839:CDS 35.0%
GAAAAAGCAATTATACCCTC+GGG + chr2.4:25048116-25048135 None:intergenic 35.0%
GGATTCAAGTGAAGAAGAAA+TGG + chr2.4:25049435-25049454 None:intergenic 35.0%
GTAATAAAAGTTTGATCGGG+AGG + chr2.4:25051395-25051414 None:intergenic 35.0%
GTAATTTGATTGGATGCATG+TGG - chr2.4:25049094-25049113 MS.gene062839:intron 35.0%
GTAGGTGTACAAAACATCAA+AGG + chr2.4:25047915-25047934 None:intergenic 35.0%
TATACTCACAAATATGCCAG+AGG + chr2.4:25051017-25051036 None:intergenic 35.0%
TCAGTGTAATAGCTTATCAG+TGG + chr2.4:25048666-25048685 None:intergenic 35.0%
TCTTTCAGACATTGTCATCA+TGG - chr2.4:25049316-25049335 MS.gene062839:CDS 35.0%
TTATTTAGGTGTACAAGGAC+AGG - chr2.4:25049486-25049505 MS.gene062839:intron 35.0%
! GTTTTTGTTCTTAGAGTCGT+AGG + chr2.4:25047933-25047952 None:intergenic 35.0%
! TAAGATAACGGCAGTACTAA+TGG + chr2.4:25051487-25051506 None:intergenic 35.0%
! TCTTGGAGTATCAACAGTAA+GGG + chr2.4:25049567-25049586 None:intergenic 35.0%
! TGATCACATTGTTGCTGATT+GGG - chr2.4:25051665-25051684 MS.gene062839:CDS 35.0%
!! AATTTTGAAGGACTGAACCT+TGG - chr2.4:25050086-25050105 MS.gene062839:CDS 35.0%
!! GAGTTAACAATGGCTTTAAG+TGG - chr2.4:25051615-25051634 MS.gene062839:CDS 35.0%
!! TCCAACTGCTTTTCAGAAAA+TGG - chr2.4:25048085-25048104 MS.gene062839:intron 35.0%
AAATTGATCGTACTCTGAGC+TGG - chr2.4:25050248-25050267 MS.gene062839:intron 40.0%
AACCAATATCAGCGAGTATG+AGG - chr2.4:25047718-25047737 MS.gene062839:CDS 40.0%
AAGGCAGAAATTGCCAAAGA+TGG - chr2.4:25047748-25047767 MS.gene062839:CDS 40.0%
ACACCTCCATCCAAAAATAC+AGG + chr2.4:25050953-25050972 None:intergenic 40.0%
ACTGTTGATACTCCAAGACT+TGG - chr2.4:25049569-25049588 MS.gene062839:intron 40.0%
AGCCTTCCAATTCTTGTGAA+GGG - chr2.4:25050471-25050490 MS.gene062839:intron 40.0%
AGTACACCCTTCACAAGAAT+TGG + chr2.4:25050480-25050499 None:intergenic 40.0%
CGACGCATTCATGTAGTTAA+CGG - chr2.4:25051120-25051139 MS.gene062839:intron 40.0%
CTCACATCGATAAGAATTCG+CGG + chr2.4:25048005-25048024 None:intergenic 40.0%
GAGAAGCTGATATCAAGAAC+AGG - chr2.4:25049597-25049616 MS.gene062839:intron 40.0%
GCTAGTGACATCAACAACTA+TGG - chr2.4:25048614-25048633 MS.gene062839:intron 40.0%
GGAATTATTGTGTCCAACCA+TGG - chr2.4:25050748-25050767 MS.gene062839:intron 40.0%
GTGATCACATTGTTGCTGAT+TGG - chr2.4:25051664-25051683 MS.gene062839:CDS 40.0%
TAGTAGTCAAACGCCATCTT+TGG + chr2.4:25047764-25047783 None:intergenic 40.0%
TCCATTTAGGCTAATGACTC+TGG - chr2.4:25050202-25050221 MS.gene062839:intron 40.0%
TTACTTCGTCCATCTTTCCA+AGG + chr2.4:25050106-25050125 None:intergenic 40.0%
TTCCTCATACTCGCTGATAT+TGG + chr2.4:25047723-25047742 None:intergenic 40.0%
! AATCAAGTTGTCTTGCACCA+TGG + chr2.4:25050768-25050787 None:intergenic 40.0%
! AGGTCGTGTTCCTGTATTTT+TGG - chr2.4:25050940-25050959 MS.gene062839:intron 40.0%
! ATTTTGTGCAGGATGTGAAG+TGG - chr2.4:25050433-25050452 MS.gene062839:intron 40.0%
! GTCTTGGAGTATCAACAGTA+AGG + chr2.4:25049568-25049587 None:intergenic 40.0%
! TCATTAGCCTAAATGGACCA+AGG + chr2.4:25050199-25050218 None:intergenic 40.0%
! TCCAGAGTCATTAGCCTAAA+TGG + chr2.4:25050206-25050225 None:intergenic 40.0%
! TGTTTTCTTGAAGAGTCCAC+TGG + chr2.4:25047805-25047824 None:intergenic 40.0%
!! GCCATTTTCTGAAAAGCAGT+TGG + chr2.4:25048089-25048108 None:intergenic 40.0%
!! TACCTCTTCTAAGGCACTTA+TGG + chr2.4:25050803-25050822 None:intergenic 40.0%
!!! CGTGTTCCTGTATTTTTGGA+TGG - chr2.4:25050944-25050963 MS.gene062839:intron 40.0%
!!! GCATGGAAATTTTGAAGCCA+AGG + chr2.4:25048052-25048071 None:intergenic 40.0%
!!! GTTCCTGTATTTTTGGATGG+AGG - chr2.4:25050947-25050966 MS.gene062839:intron 40.0%
!!! GTTGGCTTTTAAGGTTGACT+TGG + chr2.4:25051179-25051198 None:intergenic 40.0%
AACCGATGTCTTCAAGGCTT+TGG - chr2.4:25050982-25051001 MS.gene062839:intron 45.0%
AAGTTGTCTTGCACCATGGT+TGG + chr2.4:25050764-25050783 None:intergenic 45.0%
AGGACTGAACCTTGGAAAGA+TGG - chr2.4:25050094-25050113 MS.gene062839:intron 45.0%
ATCAGCTGCTGGAACAATCA+TGG - chr2.4:25048925-25048944 MS.gene062839:CDS 45.0%
CAAGAACAGGTAACTCGTTG+CGG - chr2.4:25049610-25049629 MS.gene062839:intron 45.0%
CACCATAAGTGCCTTAGAAG+AGG - chr2.4:25050798-25050817 MS.gene062839:intron 45.0%
CACCCTTCACAAGAATTGGA+AGG + chr2.4:25050476-25050495 None:intergenic 45.0%
CAGATGCGCAATCAACACTT+TGG + chr2.4:25051236-25051255 None:intergenic 45.0%
CAGCCTTCCAATTCTTGTGA+AGG - chr2.4:25050470-25050489 MS.gene062839:intron 45.0%
CTCCTGATTATTTCAGCCAG+AGG + chr2.4:25051349-25051368 None:intergenic 45.0%
CTTCACAAGAATTGGAAGGC+TGG + chr2.4:25050472-25050491 None:intergenic 45.0%
GACATGTCAACTACTGTCCT+TGG - chr2.4:25048032-25048051 MS.gene062839:intron 45.0%
GACCTCTGGCTGAAATAATC+AGG - chr2.4:25051344-25051363 MS.gene062839:CDS 45.0%
GCAGTTGGAGCAATCATGAT+TGG + chr2.4:25048074-25048093 None:intergenic 45.0%
GCGAGTATGAGGAAATTGCA+AGG - chr2.4:25047729-25047748 MS.gene062839:CDS 45.0%
GCGTTTGACTACTATGCATC+TGG - chr2.4:25047770-25047789 MS.gene062839:CDS 45.0%
GTGAGAAGAGCTGAAAAAGC+TGG - chr2.4:25049527-25049546 MS.gene062839:intron 45.0%
TAGGTTGTGAAAGCTGCTCA+AGG - chr2.4:25050920-25050939 MS.gene062839:intron 45.0%
TGCCAAAGCCTTGAAGACAT+CGG + chr2.4:25050987-25051006 None:intergenic 45.0%
TGGAGAAGCTGGTGTAAGAA+AGG - chr2.4:25051566-25051585 MS.gene062839:intron 45.0%
TGGAGCAATCATGATTGGCA+TGG + chr2.4:25048069-25048088 None:intergenic 45.0%
! AACTGGAAAAAGCGGATTCC+AGG + chr2.4:25049378-25049397 None:intergenic 45.0%
! GATAACGGCAGTACTAATGG+TGG + chr2.4:25051484-25051503 None:intergenic 45.0%
! GGACTTGCTTCATATGTTGC+TGG - chr2.4:25050223-25050242 MS.gene062839:intron 45.0%
!! CTCTTCTAAGGCACTTATGG+TGG + chr2.4:25050800-25050819 None:intergenic 45.0%
CAGAAAATGGCTCATCCCGA+GGG - chr2.4:25048098-25048117 MS.gene062839:intron 50.0%
CAGCCAGAGAATACACCACA+GGG + chr2.4:25051542-25051561 None:intergenic 50.0%
GAGTGATTTCCTTGAGCGAG+CGG + chr2.4:25051644-25051663 None:intergenic 50.0%
GTCGAAGAAGTTGCTTCCAC+TGG - chr2.4:25049351-25049370 MS.gene062839:CDS 50.0%
GTGTATTCTCTGGCTGCTGA+TGG - chr2.4:25051546-25051565 MS.gene062839:intron 50.0%
TAGTACCCTAGTTCGACCTC+TGG - chr2.4:25051330-25051349 MS.gene062839:CDS 50.0%
TCAGAAAATGGCTCATCCCG+AGG - chr2.4:25048097-25048116 MS.gene062839:intron 50.0%
TGATCGTACTCTGAGCTGGA+AGG - chr2.4:25050252-25050271 MS.gene062839:intron 50.0%
TTCAGCCAGAGGTCGAACTA+GGG + chr2.4:25051338-25051357 None:intergenic 50.0%
TTTCAGCCAGAGGTCGAACT+AGG + chr2.4:25051339-25051358 None:intergenic 50.0%
! CTACTATGCATCTGGTGCTG+AGG - chr2.4:25047778-25047797 MS.gene062839:CDS 50.0%
! GATGTCACTAGCGCCTTGTT+TGG + chr2.4:25048606-25048625 None:intergenic 50.0%
! GTCTTCAAGGCTTTGGCACT+TGG - chr2.4:25050989-25051008 MS.gene062839:intron 50.0%
! TCTAAGGCACTTATGGTGGC+TGG + chr2.4:25050796-25050815 None:intergenic 50.0%
!! CCTTGAAGACATCGGTTCCA+CGG + chr2.4:25050979-25050998 None:intergenic 50.0%
ACGCCCTGTGGTGTATTCTC+TGG - chr2.4:25051536-25051555 MS.gene062839:intron 55.0%
CCGTGGAACCGATGTCTTCA+AGG - chr2.4:25050976-25050995 MS.gene062839:intron 55.0%
GAAGTTGCTTCCACTGGACC+TGG - chr2.4:25049357-25049376 MS.gene062839:CDS 55.0%
GCAAGGCTAGCAGTGCAAAG+TGG - chr2.4:25050718-25050737 MS.gene062839:intron 55.0%
GCAGCCAGAGAATACACCAC+AGG + chr2.4:25051543-25051562 None:intergenic 55.0%
GCTTCTCTGCGTCCAAGTCT+TGG + chr2.4:25049584-25049603 None:intergenic 55.0%
TGTCTAGATTGGACGCCCTG+TGG - chr2.4:25051524-25051543 MS.gene062839:intron 55.0%
! AAAGCGGATTCCAGGTCCAG+TGG + chr2.4:25049370-25049389 None:intergenic 55.0%
! GAAGGGTGTACTCACTGCTG+AGG - chr2.4:25050488-25050507 MS.gene062839:intron 55.0%
AAGTGGATGCCGCTCGCTCA+AGG - chr2.4:25051632-25051651 MS.gene062839:CDS 60.0%
CTGGCTGCTGATGGAGAAGC+TGG - chr2.4:25051555-25051574 MS.gene062839:intron 60.0%
GCAAGAGCTGCATCAGCTGC+TGG - chr2.4:25048914-25048933 MS.gene062839:intron 60.0%
GCAGTGCAAAGTGGTGCAGC+TGG - chr2.4:25050727-25050746 MS.gene062839:intron 60.0%
! CATCTGGTGCTGAGGACCAG+TGG - chr2.4:25047786-25047805 MS.gene062839:CDS 60.0%
! TTGGATGGAGGTGTACGCCG+TGG - chr2.4:25050959-25050978 MS.gene062839:intron 60.0%
!! GCTTTGGCACTTGGTGCCTC+TGG - chr2.4:25050998-25051017 MS.gene062839:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 25047707 25051728 25047707 ID=MS.gene062839
chr2.4 mRNA 25047707 25051728 25047707 ID=MS.gene062839.t1;Parent=MS.gene062839
chr2.4 exon 25051589 25051728 25051589 ID=MS.gene062839.t1.exon1;Parent=MS.gene062839.t1
chr2.4 CDS 25051589 25051728 25051589 ID=cds.MS.gene062839.t1;Parent=MS.gene062839.t1
chr2.4 exon 25051316 25051440 25051316 ID=MS.gene062839.t1.exon2;Parent=MS.gene062839.t1
chr2.4 CDS 25051316 25051440 25051316 ID=cds.MS.gene062839.t1;Parent=MS.gene062839.t1
chr2.4 exon 25050489 25050535 25050489 ID=MS.gene062839.t1.exon3;Parent=MS.gene062839.t1
chr2.4 CDS 25050489 25050535 25050489 ID=cds.MS.gene062839.t1;Parent=MS.gene062839.t1
chr2.4 exon 25050034 25050111 25050034 ID=MS.gene062839.t1.exon4;Parent=MS.gene062839.t1
chr2.4 CDS 25050034 25050111 25050034 ID=cds.MS.gene062839.t1;Parent=MS.gene062839.t1
chr2.4 exon 25049817 25049941 25049817 ID=MS.gene062839.t1.exon5;Parent=MS.gene062839.t1
chr2.4 CDS 25049817 25049941 25049817 ID=cds.MS.gene062839.t1;Parent=MS.gene062839.t1
chr2.4 exon 25049314 25049380 25049314 ID=MS.gene062839.t1.exon6;Parent=MS.gene062839.t1
chr2.4 CDS 25049314 25049380 25049314 ID=cds.MS.gene062839.t1;Parent=MS.gene062839.t1
chr2.4 exon 25049162 25049224 25049162 ID=MS.gene062839.t1.exon7;Parent=MS.gene062839.t1
chr2.4 CDS 25049162 25049224 25049162 ID=cds.MS.gene062839.t1;Parent=MS.gene062839.t1
chr2.4 exon 25048922 25048991 25048922 ID=MS.gene062839.t1.exon8;Parent=MS.gene062839.t1
chr2.4 CDS 25048922 25048991 25048922 ID=cds.MS.gene062839.t1;Parent=MS.gene062839.t1
chr2.4 exon 25048616 25048716 25048616 ID=MS.gene062839.t1.exon9;Parent=MS.gene062839.t1
chr2.4 CDS 25048616 25048716 25048616 ID=cds.MS.gene062839.t1;Parent=MS.gene062839.t1
chr2.4 exon 25048408 25048512 25048408 ID=MS.gene062839.t1.exon10;Parent=MS.gene062839.t1
chr2.4 CDS 25048408 25048512 25048408 ID=cds.MS.gene062839.t1;Parent=MS.gene062839.t1
chr2.4 exon 25047707 25047904 25047707 ID=MS.gene062839.t1.exon11;Parent=MS.gene062839.t1
chr2.4 CDS 25047707 25047904 25047707 ID=cds.MS.gene062839.t1;Parent=MS.gene062839.t1
Gene Sequence

>MS.gene062839

ATGGGAGAGATAACCAATATCAGCGAGTATGAGGAAATTGCAAGGCAGAAATTGCCAAAGATGGCGTTTGACTACTATGCATCTGGTGCTGAGGACCAGTGGACTCTTCAAGAAAACAGAAATGCCTTTTCCAAAATTTTGTAAGATTTCATATAACTTATTTTGACAGTTCCTAAGTTACCAAATTATGTTACTTTATTATGTTCCTTTGATGTTTTGTACACCTACGACTCTAAGAACAAAAACAAATGTTAATGTGCTGAAAAATATGGTTGACAAACATTACAGGTTTAGGCCGCGAATTCTTATCGATGTGAGCAAGATAGACATGTCAACTACTGTCCTTGGCTTCAAAATTTCCATGCCAATCATGATTGCTCCAACTGCTTTTCAGAAAATGGCTCATCCCGAGGGTATAATTGCTTTTTCTTTAAATTCACTTGGATTTCGGAAATGGAAAATGAAGTTGTTTTGTTTTGTGCAATATTCTGTTCATTTTGTTAGAAGGGAAAAAAATCATGAAAAATCATGCATGACATGAATTGTGGAGAGTTTTAGCTTATATTACCCTTCTTGATACTTACATGCTATGAAAATGATTACTATAAGCATTTGTGAGACTATTTAGAAACAACTTATCTACTTGATTTATGTACAAAACGATAATTGAGACGGAGATCATTAAGTTTATCTGTGCTTATCAAAACAACTTATGATATGTTTATATGTTGTTTTTAGCTTATTTCCATAAGCTTCAAAATGTAGCTTATGAAAACAGCTTAGAGCTTAAATGAAAGTAATTTGACTTTATTTTATCTTTTGTTATAGAAAGAACATATACACGAACACTGATACGATAAACGTTTATGCTTTACGCACTTACTCAAACTGTTTATCCAAACAAGGCGCTAGTGACATCAACAACTATGGTAACTTGGTTTCTAGTTGTGTAACTTCCACTGATAAGCTATTACACTGAAATTAAGTGTGAATAAACATTAGTAATTCTTAAAAAAAAATATCATCTGCTAGTTTTGATAAATGGATAAAAACAAACTCAATGGTTTTTTATTAAGAAAACACTACAATAGGATAGCAACATGAGATTTAAATTGTCGATGTTCTTGTATTATATATTATATTTCAAATCCCCTTTTGTGTTTAGTGACATGTACAATTTTTTTCTTGTGCAGGAGAATATGCAACAGCAAGAGCTGCATCAGCTGCTGGAACAATCATGGTACTTCTCTTCCTATTTTTGTAATAAACATTTGATTTGTATACACTGTCATATAAAACATTTTTACACATGCGTTCAATCAAATCTTCCCATGTAGATATTTGCAGAGATGTTTTAGAAACGAACAAAACTAAGTGACATGATAGTGTAATTTGATTGGATGCATGTGGAAACAATTTTTGCATAGCACAATATTTGGAAAAAATGAAAATAGCTTATTACATGTCGGTAAAGTGTTTTTAGCATATGTAGAGTTTATCCTCATTACTTCTTCAATTAATTCTAAAATCAGAAAACACATAAGCTCTTATACGATTAACACTTATTTCACTGTATACTCAAATCAGTTACTTCAATTAACTTGTTGATTCTTTCAGACATTGTCATCATGGGCGACTTCAAGTGTCGAAGAAGTTGCTTCCACTGGACCTGGAATCCGCTTTTTCCAGTTATATGTGAGCAACAAAAACATTATTCTCTCAGTTCCATTTCTTCTTCACTTGAATCCATTGTTATATGTTCTGTATTGGCCATGTTCTTTATTTAGGTGTACAAGGACAGGAATGTTGTTGCTCAGCTTGTGAGAAGAGCTGAAAAAGCTGGATTCAAAGCTATTGCCCTTACTGTTGATACTCCAAGACTTGGACGCAGAGAAGCTGATATCAAGAACAGGTAACTCGTTGCGGCTGTGTTGTGATTCTTAATATTGCAAAGAATCATATTTACATGAGTCTGATGCGGCCACAATTGCAATCACTATAACATAACTGAAATATCGCATTTATTGATAACTTGATCAATAAGGAATACAATAGACTCTATTTATACATACAAGTTCATTTTTTTTTTTTTTTGACAAGTATACATACGAGTTCATATGAAAAGGAAAAACATAACAAGGATAACTAACCTAACTAACTCTGTTAGATTAACAAATTCTTAACAAACTATATATCATCTAAAAGTCACGTTGCAATTGTGAAGACCTAAAAATTTTGATGTTGCAGGTTTATATTATTGTCGCAGACCTTTTTCAAAAACCAATATGCTTAGATTTTGAGTTTCAGCTTTAATGTAATAAAGATTAATTATAAAATTTCTTTTACAGATTTGTTCTGCCACCATTTTTGACATTGAAGAATTTTGAAGGACTGAACCTTGGAAAGATGGACGAAGTAAGTGAGATCAATTATTACAAAATTAGTAACATAGTTTAATGGTCTTACCTCTATAATTAATATAATTGTTACCTTGGTCCATTTAGGCTAATGACTCTGGACTTGCTTCATATGTTGCTGGTCAAATTGATCGTACTCTGAGCTGGAAGGTATGTCACCAATTTGTTCGCTCAATTCGTTGTTTTTGATTGATAAGTAGCATGCATGCTGACATTAGAAAAACAAAAGAAAACACTACTTTTGGTTGTCATTTTTAGTCTACATAATGGAATTTTCAAGGTTCCAATGATTTAGTGTTGTTTTTGTTAATTTTGTGCAGGATGTGAAGTGGCTTCAGACTATCACCAGCCTTCCAATTCTTGTGAAGGGTGTACTCACTGCTGAGGATAGTAAGCAAAACAAAACCTGTTTGAGAATTCTATTAATACACTTTCTAACACATTGTTTTCGATACACCGTTATATTTAACACTTTTTCCAATACACTAGTATTAGCTATAACTCACATACATCATTACATATAAAAGAAGTGATTACAATACTCTAGGTGAATTTTTTCCGAATATTTATTAATGGTTTGATGTAAATTTTGCAGCAAGGCTAGCAGTGCAAAGTGGTGCAGCTGGAATTATTGTGTCCAACCATGGTGCAAGACAACTTGATTATGTTCCAGCCACCATAAGTGCCTTAGAAGAGGTACTTTAAGAATGTCAAGTTATTATATAACTGAATTAATTGTATAAATCATTCTACATAATAAGATTGCTTATATCATAATTGTGTTGTTGACATTACTTAGGTTGTGAAAGCTGCTCAAGGTCGTGTTCCTGTATTTTTGGATGGAGGTGTACGCCGTGGAACCGATGTCTTCAAGGCTTTGGCACTTGGTGCCTCTGGCATATTTGTGAGTATACTCATAACATTTCCCAATATATTACATGCTCATTGCCTCATTAGTAATAATTTCTTAATTTGGATCGTCTATGGTCACAATGTCGACGCATTCATGTAGTTAACGGTTTGGAGCTGTTGTGACTCTTATTTTAAGCTCTCCAAGTCAACCTTAAAAGCCAACTTTATCAAATTCGTTTGATTTTGATCAAACATCTCCAAAGTGTTGATTGCGCATCTGAATTCATAATTCTTGAGTGGCTATAGTATCTATGAACCCTGTTAATCTTAAACACAATGGTTGAAATATGCGAGTAGTACCCTAGTTCGACCTCTGGCTGAAATAATCAGGAGTAATCATTGATCAACTTAATTTACCTCCCGATCAAACTTTTATTACGACGCTTGTCTTCTATAATATATGGAGGATTAAGACGAACAAAAACAAAATAATTTATCGTTATAACCACCATTAGTACTGCCGTTATCTTAACGAACAAATTATGCAATGTCTAGATTGGACGCCCTGTGGTGTATTCTCTGGCTGCTGATGGAGAAGCTGGTGTAAGAAAGGTCCTTCAAATGTTACGTGATGAGTTTGAGTTAACAATGGCTTTAAGTGGATGCCGCTCGCTCAAGGAAATCACTCGTGATCACATTGTTGCTGATTGGGACACCCCTCGCGTTAATCCTCGTGCCATACCAAGATTATGA

Protein sequence

>MS.gene062839.t1

MGEITNISEYEEIARQKLPKMAFDYYASGAEDQWTLQENRNAFSKILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAFQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAEKAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGLNLGKMDEANDSGLASYVAGQIDRTLSWKDVKWLQTITSLPILVKGVLTAEDTRLAVQSGAAGIIVSNHGARQLDYVPATISALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAADGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRDHIVADWDTPRVNPRAIPRL