Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23271.t1 | XP_003606932.1 | 87.8 | 360 | 27 | 2 | 1 | 359 | 1 | 344 | 3.00E-168 | 601.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23271.t1 | Q9CAA9 | 48.8 | 215 | 76 | 4 | 152 | 358 | 297 | 485 | 1.1e-41 | 172.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23271.t1 | G7JHB9 | 87.8 | 360 | 27 | 2 | 1 | 359 | 1 | 344 | 2.1e-168 | 601.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene23271.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene23271 | 0.845122 | 4.95E-59 | -1.69E-46 |
| MS.gene049222 | MS.gene23271 | 0.818255 | 2.16E-52 | -1.69E-46 |
| MS.gene049285 | MS.gene23271 | 0.816356 | 5.77E-52 | -1.69E-46 |
| MS.gene049320 | MS.gene23271 | 0.824562 | 7.55E-54 | -1.69E-46 |
| MS.gene049351 | MS.gene23271 | 0.809008 | 2.34E-50 | -1.69E-46 |
| MS.gene049369 | MS.gene23271 | 0.809487 | 1.85E-50 | -1.69E-46 |
| MS.gene049425 | MS.gene23271 | -0.802007 | 6.88E-49 | -1.69E-46 |
| MS.gene049427 | MS.gene23271 | 0.858106 | 1.03E-62 | -1.69E-46 |
| MS.gene049491 | MS.gene23271 | 0.835069 | 2.08E-56 | -1.69E-46 |
| MS.gene049609 | MS.gene23271 | 0.803963 | 2.71E-49 | -1.69E-46 |
| MS.gene049614 | MS.gene23271 | 0.83769 | 4.48E-57 | -1.69E-46 |
| MS.gene049661 | MS.gene23271 | 0.841945 | 3.49E-58 | -1.69E-46 |
| MS.gene049662 | MS.gene23271 | 0.834664 | 2.63E-56 | -1.69E-46 |
| MS.gene049760 | MS.gene23271 | 0.824866 | 6.40E-54 | -1.69E-46 |
| MS.gene049805 | MS.gene23271 | 0.84503 | 5.24E-59 | -1.69E-46 |
| MS.gene049828 | MS.gene23271 | 0.835716 | 1.43E-56 | -1.69E-46 |
| MS.gene050076 | MS.gene23271 | 0.868368 | 6.88E-66 | -1.69E-46 |
| MS.gene050163 | MS.gene23271 | 0.836688 | 8.08E-57 | -1.69E-46 |
| MS.gene050165 | MS.gene23271 | 0.821981 | 3.02E-53 | -1.69E-46 |
| MS.gene050333 | MS.gene23271 | 0.827793 | 1.29E-54 | -1.69E-46 |
| MS.gene050397 | MS.gene23271 | 0.803961 | 2.72E-49 | -1.69E-46 |
| MS.gene050432 | MS.gene23271 | 0.86042 | 2.09E-63 | -1.69E-46 |
| MS.gene05053 | MS.gene23271 | 0.820683 | 6.02E-53 | -1.69E-46 |
| MS.gene050593 | MS.gene23271 | 0.812286 | 4.58E-51 | -1.69E-46 |
| MS.gene050686 | MS.gene23271 | 0.802776 | 4.78E-49 | -1.69E-46 |
| MS.gene050767 | MS.gene23271 | 0.898899 | 3.37E-77 | -1.69E-46 |
| MS.gene050770 | MS.gene23271 | 0.901717 | 2.02E-78 | -1.69E-46 |
| MS.gene050772 | MS.gene23271 | 0.842466 | 2.54E-58 | -1.69E-46 |
| MS.gene05100 | MS.gene23271 | 0.826382 | 2.80E-54 | -1.69E-46 |
| MS.gene05101 | MS.gene23271 | 0.845652 | 3.55E-59 | -1.69E-46 |
| MS.gene05105 | MS.gene23271 | 0.825945 | 3.55E-54 | -1.69E-46 |
| MS.gene051228 | MS.gene23271 | 0.874906 | 4.68E-68 | -1.69E-46 |
| MS.gene051387 | MS.gene23271 | 0.804345 | 2.26E-49 | -1.69E-46 |
| MS.gene051471 | MS.gene23271 | 0.811354 | 7.30E-51 | -1.69E-46 |
| MS.gene051666 | MS.gene23271 | 0.854843 | 9.40E-62 | -1.69E-46 |
| MS.gene051692 | MS.gene23271 | 0.820905 | 5.36E-53 | -1.69E-46 |
| MS.gene051694 | MS.gene23271 | 0.805414 | 1.35E-49 | -1.69E-46 |
| MS.gene051810 | MS.gene23271 | 0.829619 | 4.65E-55 | -1.69E-46 |
| MS.gene051858 | MS.gene23271 | 0.829084 | 6.27E-55 | -1.69E-46 |
| MS.gene051877 | MS.gene23271 | 0.81237 | 4.39E-51 | -1.69E-46 |
| MS.gene051949 | MS.gene23271 | 0.804112 | 2.53E-49 | -1.69E-46 |
| MS.gene052078 | MS.gene23271 | 0.828586 | 8.28E-55 | -1.69E-46 |
| MS.gene052271 | MS.gene23271 | 0.880588 | 4.85E-70 | -1.69E-46 |
| MS.gene052290 | MS.gene23271 | 0.886083 | 4.66E-72 | -1.69E-46 |
| MS.gene052293 | MS.gene23271 | 0.822414 | 2.40E-53 | -1.69E-46 |
| MS.gene052310 | MS.gene23271 | 0.840727 | 7.30E-58 | -1.69E-46 |
| MS.gene052326 | MS.gene23271 | 0.854696 | 1.04E-61 | -1.69E-46 |
| MS.gene052379 | MS.gene23271 | 0.879573 | 1.12E-69 | -1.69E-46 |
| MS.gene052421 | MS.gene23271 | 0.814225 | 1.72E-51 | -1.69E-46 |
| MS.gene052484 | MS.gene23271 | 0.834358 | 3.14E-56 | -1.69E-46 |
| MS.gene053009 | MS.gene23271 | 0.861795 | 7.98E-64 | -1.69E-46 |
| MS.gene053103 | MS.gene23271 | 0.868339 | 7.03E-66 | -1.69E-46 |
| MS.gene053104 | MS.gene23271 | 0.885249 | 9.57E-72 | -1.69E-46 |
| MS.gene053207 | MS.gene23271 | 0.809912 | 1.50E-50 | -1.69E-46 |
| MS.gene053209 | MS.gene23271 | 0.815784 | 7.74E-52 | -1.69E-46 |
| MS.gene053213 | MS.gene23271 | 0.839516 | 1.51E-57 | -1.69E-46 |
| MS.gene053286 | MS.gene23271 | 0.829789 | 4.23E-55 | -1.69E-46 |
| MS.gene053322 | MS.gene23271 | 0.915004 | 9.84E-85 | -1.69E-46 |
| MS.gene053384 | MS.gene23271 | 0.847137 | 1.40E-59 | -1.69E-46 |
| MS.gene053632 | MS.gene23271 | 0.833036 | 6.71E-56 | -1.69E-46 |
| MS.gene053813 | MS.gene23271 | 0.834699 | 2.58E-56 | -1.69E-46 |
| MS.gene053916 | MS.gene23271 | 0.819661 | 1.03E-52 | -1.69E-46 |
| MS.gene054123 | MS.gene23271 | 0.804244 | 2.37E-49 | -1.69E-46 |
| MS.gene054376 | MS.gene23271 | 0.88363 | 3.81E-71 | -1.69E-46 |
| MS.gene054543 | MS.gene23271 | 0.826805 | 2.22E-54 | -1.69E-46 |
| MS.gene054600 | MS.gene23271 | 0.802298 | 6.00E-49 | -1.69E-46 |
| MS.gene054642 | MS.gene23271 | 0.863347 | 2.66E-64 | -1.69E-46 |
| MS.gene054802 | MS.gene23271 | 0.879811 | 9.18E-70 | -1.69E-46 |
| MS.gene054803 | MS.gene23271 | 0.874203 | 8.11E-68 | -1.69E-46 |
| MS.gene054804 | MS.gene23271 | 0.879766 | 9.53E-70 | -1.69E-46 |
| MS.gene054955 | MS.gene23271 | 0.820485 | 6.69E-53 | -1.69E-46 |
| MS.gene05505 | MS.gene23271 | 0.846478 | 2.12E-59 | -1.69E-46 |
| MS.gene055206 | MS.gene23271 | 0.821478 | 3.95E-53 | -1.69E-46 |
| MS.gene055212 | MS.gene23271 | 0.826544 | 2.56E-54 | -1.69E-46 |
| MS.gene055254 | MS.gene23271 | 0.883272 | 5.16E-71 | -1.69E-46 |
| MS.gene055277 | MS.gene23271 | 0.851852 | 6.77E-61 | -1.69E-46 |
| MS.gene055362 | MS.gene23271 | 0.801688 | 8.00E-49 | -1.69E-46 |
| MS.gene055397 | MS.gene23271 | 0.903537 | 3.13E-79 | -1.69E-46 |
| MS.gene055412 | MS.gene23271 | 0.805012 | 1.64E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene23271 | 0.801438 | 9.00E-49 | -1.69E-46 |
| MS.gene055499 | MS.gene23271 | 0.888804 | 4.27E-73 | -1.69E-46 |
| MS.gene055636 | MS.gene23271 | 0.84926 | 3.62E-60 | -1.69E-46 |
| MS.gene055638 | MS.gene23271 | 0.839507 | 1.52E-57 | -1.69E-46 |
| MS.gene055647 | MS.gene23271 | 0.858998 | 5.61E-63 | -1.69E-46 |
| MS.gene055722 | MS.gene23271 | 0.841208 | 5.46E-58 | -1.69E-46 |
| MS.gene055896 | MS.gene23271 | 0.839218 | 1.81E-57 | -1.69E-46 |
| MS.gene05592 | MS.gene23271 | 0.882596 | 9.12E-71 | -1.69E-46 |
| MS.gene055941 | MS.gene23271 | 0.804604 | 1.99E-49 | -1.69E-46 |
| MS.gene055956 | MS.gene23271 | -0.810264 | 1.26E-50 | -1.69E-46 |
| MS.gene056083 | MS.gene23271 | 0.824742 | 6.84E-54 | -1.69E-46 |
| MS.gene056191 | MS.gene23271 | 0.811883 | 5.60E-51 | -1.69E-46 |
| MS.gene056374 | MS.gene23271 | 0.849832 | 2.51E-60 | -1.69E-46 |
| MS.gene056410 | MS.gene23271 | 0.865596 | 5.27E-65 | -1.69E-46 |
| MS.gene056511 | MS.gene23271 | 0.801515 | 8.68E-49 | -1.69E-46 |
| MS.gene056549 | MS.gene23271 | 0.803836 | 2.88E-49 | -1.69E-46 |
| MS.gene056609 | MS.gene23271 | 0.862915 | 3.61E-64 | -1.69E-46 |
| MS.gene056611 | MS.gene23271 | 0.800729 | 1.26E-48 | -1.69E-46 |
| MS.gene056657 | MS.gene23271 | 0.833943 | 3.99E-56 | -1.69E-46 |
| MS.gene056897 | MS.gene23271 | 0.810735 | 9.94E-51 | -1.69E-46 |
| MS.gene057011 | MS.gene23271 | 0.84657 | 2.00E-59 | -1.69E-46 |
| MS.gene057123 | MS.gene23271 | 0.849072 | 4.09E-60 | -1.69E-46 |
| MS.gene057129 | MS.gene23271 | 0.902847 | 6.37E-79 | -1.69E-46 |
| MS.gene057146 | MS.gene23271 | 0.863475 | 2.42E-64 | -1.69E-46 |
| MS.gene057246 | MS.gene23271 | 0.818544 | 1.86E-52 | -1.69E-46 |
| MS.gene057285 | MS.gene23271 | 0.819207 | 1.31E-52 | -1.69E-46 |
| MS.gene057295 | MS.gene23271 | 0.861589 | 9.23E-64 | -1.69E-46 |
| MS.gene057331 | MS.gene23271 | 0.83128 | 1.83E-55 | -1.69E-46 |
| MS.gene05735 | MS.gene23271 | 0.829232 | 5.78E-55 | -1.69E-46 |
| MS.gene057416 | MS.gene23271 | 0.856916 | 2.33E-62 | -1.69E-46 |
| MS.gene057926 | MS.gene23271 | 0.833139 | 6.33E-56 | -1.69E-46 |
| MS.gene058006 | MS.gene23271 | 0.815115 | 1.09E-51 | -1.69E-46 |
| MS.gene058019 | MS.gene23271 | 0.832246 | 1.05E-55 | -1.69E-46 |
| MS.gene058082 | MS.gene23271 | 0.813648 | 2.30E-51 | -1.69E-46 |
| MS.gene058293 | MS.gene23271 | 0.858851 | 6.20E-63 | -1.69E-46 |
| MS.gene058323 | MS.gene23271 | 0.831483 | 1.63E-55 | -1.69E-46 |
| MS.gene058419 | MS.gene23271 | 0.830236 | 3.29E-55 | -1.69E-46 |
| MS.gene058660 | MS.gene23271 | 0.877496 | 6.00E-69 | -1.69E-46 |
| MS.gene058723 | MS.gene23271 | 0.830303 | 3.17E-55 | -1.69E-46 |
| MS.gene058773 | MS.gene23271 | 0.814364 | 1.60E-51 | -1.69E-46 |
| MS.gene058840 | MS.gene23271 | -0.808995 | 2.35E-50 | -1.69E-46 |
| MS.gene058903 | MS.gene23271 | 0.817809 | 2.72E-52 | -1.69E-46 |
| MS.gene058928 | MS.gene23271 | 0.8113 | 7.50E-51 | -1.69E-46 |
| MS.gene059029 | MS.gene23271 | 0.850797 | 1.35E-60 | -1.69E-46 |
| MS.gene05913 | MS.gene23271 | 0.802292 | 6.01E-49 | -1.69E-46 |
| MS.gene059326 | MS.gene23271 | 0.822767 | 1.99E-53 | -1.69E-46 |
| MS.gene05934 | MS.gene23271 | 0.822619 | 2.15E-53 | -1.69E-46 |
| MS.gene059536 | MS.gene23271 | 0.887525 | 1.32E-72 | -1.69E-46 |
| MS.gene059597 | MS.gene23271 | 0.8145 | 1.49E-51 | -1.69E-46 |
| MS.gene059676 | MS.gene23271 | 0.842494 | 2.50E-58 | -1.69E-46 |
| MS.gene059677 | MS.gene23271 | 0.813849 | 2.08E-51 | -1.69E-46 |
| MS.gene059688 | MS.gene23271 | 0.837329 | 5.54E-57 | -1.69E-46 |
| MS.gene059692 | MS.gene23271 | 0.845076 | 5.09E-59 | -1.69E-46 |
| MS.gene059695 | MS.gene23271 | 0.839544 | 1.49E-57 | -1.69E-46 |
| MS.gene059708 | MS.gene23271 | 0.813299 | 2.75E-51 | -1.69E-46 |
| MS.gene059711 | MS.gene23271 | 0.835868 | 1.31E-56 | -1.69E-46 |
| MS.gene059718 | MS.gene23271 | 0.809677 | 1.68E-50 | -1.69E-46 |
| MS.gene059858 | MS.gene23271 | 0.810668 | 1.03E-50 | -1.69E-46 |
| MS.gene059894 | MS.gene23271 | 0.808723 | 2.69E-50 | -1.69E-46 |
| MS.gene059902 | MS.gene23271 | 0.829033 | 6.45E-55 | -1.69E-46 |
| MS.gene059960 | MS.gene23271 | 0.903828 | 2.32E-79 | -1.69E-46 |
| MS.gene060005 | MS.gene23271 | 0.807454 | 5.01E-50 | -1.69E-46 |
| MS.gene060193 | MS.gene23271 | 0.832544 | 8.90E-56 | -1.69E-46 |
| MS.gene06037 | MS.gene23271 | 0.800878 | 1.17E-48 | -1.69E-46 |
| MS.gene060804 | MS.gene23271 | 0.886582 | 3.02E-72 | -1.69E-46 |
| MS.gene060818 | MS.gene23271 | 0.888364 | 6.31E-73 | -1.69E-46 |
| MS.gene060837 | MS.gene23271 | 0.800806 | 1.21E-48 | -1.69E-46 |
| MS.gene061041 | MS.gene23271 | 0.862913 | 3.62E-64 | -1.69E-46 |
| MS.gene061051 | MS.gene23271 | -0.83988 | 1.22E-57 | -1.69E-46 |
| MS.gene061134 | MS.gene23271 | 0.81401 | 1.92E-51 | -1.69E-46 |
| MS.gene061150 | MS.gene23271 | 0.80314 | 4.02E-49 | -1.69E-46 |
| MS.gene061200 | MS.gene23271 | 0.913952 | 3.39E-84 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23271.t1 | MTR_4g070320 | 90.833 | 360 | 16 | 2 | 1 | 359 | 1 | 344 | 0.0 | 667 |
| MS.gene23271.t1 | MTR_3g116770 | 53.589 | 418 | 114 | 17 | 1 | 359 | 1 | 397 | 9.51e-125 | 364 |
| MS.gene23271.t1 | MTR_3g116770 | 53.461 | 419 | 114 | 18 | 1 | 359 | 1 | 398 | 4.90e-123 | 360 |
| MS.gene23271.t1 | MTR_7g053410 | 51.691 | 207 | 84 | 6 | 69 | 261 | 220 | 424 | 7.52e-53 | 182 |
| MS.gene23271.t1 | MTR_7g053410 | 51.691 | 207 | 84 | 6 | 69 | 261 | 220 | 424 | 1.54e-52 | 182 |
| MS.gene23271.t1 | MTR_5g048860 | 46.332 | 259 | 102 | 13 | 119 | 359 | 319 | 558 | 3.60e-49 | 174 |
| MS.gene23271.t1 | MTR_8g065740 | 54.088 | 159 | 68 | 3 | 88 | 245 | 238 | 392 | 4.51e-46 | 163 |
| MS.gene23271.t1 | MTR_8g012290 | 60.000 | 145 | 52 | 3 | 106 | 248 | 242 | 382 | 4.55e-46 | 164 |
| MS.gene23271.t1 | MTR_8g012290 | 60.000 | 145 | 52 | 3 | 106 | 248 | 242 | 382 | 5.02e-46 | 164 |
| MS.gene23271.t1 | MTR_1g017350 | 45.972 | 211 | 72 | 6 | 138 | 334 | 226 | 408 | 6.13e-45 | 159 |
| MS.gene23271.t1 | MTR_1g017350 | 45.972 | 211 | 72 | 6 | 138 | 334 | 226 | 408 | 8.24e-45 | 159 |
| MS.gene23271.t1 | MTR_1g017350 | 65.833 | 120 | 27 | 2 | 138 | 243 | 226 | 345 | 4.89e-44 | 157 |
| MS.gene23271.t1 | MTR_1g017350 | 65.833 | 120 | 27 | 2 | 138 | 243 | 226 | 345 | 5.79e-44 | 157 |
| MS.gene23271.t1 | MTR_8g062240 | 75.258 | 97 | 24 | 0 | 155 | 251 | 148 | 244 | 4.90e-43 | 150 |
| MS.gene23271.t1 | MTR_5g037250 | 59.701 | 134 | 42 | 2 | 114 | 247 | 79 | 200 | 1.24e-42 | 148 |
| MS.gene23271.t1 | MTR_7g092510 | 74.194 | 93 | 24 | 0 | 151 | 243 | 166 | 258 | 8.51e-42 | 149 |
| MS.gene23271.t1 | MTR_1g059270 | 62.712 | 118 | 35 | 3 | 137 | 250 | 143 | 255 | 3.07e-41 | 147 |
| MS.gene23271.t1 | MTR_1g059270 | 64.545 | 110 | 33 | 2 | 137 | 245 | 143 | 247 | 3.64e-41 | 145 |
| MS.gene23271.t1 | MTR_8g099880 | 82.143 | 84 | 14 | 1 | 155 | 237 | 142 | 225 | 1.42e-39 | 143 |
| MS.gene23271.t1 | MTR_3g498825 | 75.000 | 92 | 20 | 1 | 155 | 243 | 144 | 235 | 2.70e-39 | 142 |
| MS.gene23271.t1 | MTR_6g084120 | 55.556 | 99 | 34 | 2 | 138 | 235 | 134 | 223 | 3.01e-25 | 103 |
| MS.gene23271.t1 | MTR_4g131160 | 71.212 | 66 | 18 | 1 | 158 | 223 | 196 | 260 | 1.35e-21 | 95.5 |
| MS.gene23271.t1 | MTR_4g131160 | 71.212 | 66 | 18 | 1 | 158 | 223 | 199 | 263 | 1.40e-21 | 95.5 |
| MS.gene23271.t1 | MTR_1g080890 | 68.182 | 66 | 20 | 1 | 158 | 223 | 193 | 257 | 2.12e-20 | 91.3 |
| MS.gene23271.t1 | MTR_4g065870 | 56.923 | 65 | 28 | 0 | 158 | 222 | 355 | 419 | 5.85e-15 | 76.3 |
| MS.gene23271.t1 | MTR_2g098310 | 52.239 | 67 | 32 | 0 | 156 | 222 | 330 | 396 | 1.04e-14 | 75.1 |
| MS.gene23271.t1 | MTR_1g069155 | 52.174 | 69 | 32 | 1 | 160 | 228 | 319 | 386 | 1.04e-14 | 75.5 |
| MS.gene23271.t1 | MTR_4g033295 | 53.846 | 65 | 30 | 0 | 158 | 222 | 118 | 182 | 1.85e-14 | 71.6 |
| MS.gene23271.t1 | MTR_2g098310 | 53.030 | 66 | 31 | 0 | 156 | 221 | 330 | 395 | 2.56e-14 | 73.9 |
| MS.gene23271.t1 | MTR_4g033295 | 52.239 | 67 | 31 | 1 | 158 | 223 | 118 | 184 | 3.23e-14 | 70.9 |
| MS.gene23271.t1 | MTR_1g084980 | 45.205 | 73 | 39 | 1 | 160 | 232 | 464 | 535 | 3.37e-14 | 74.3 |
| MS.gene23271.t1 | MTR_4g065870 | 56.452 | 62 | 27 | 0 | 158 | 219 | 355 | 416 | 3.55e-14 | 73.6 |
| MS.gene23271.t1 | MTR_1g052470 | 48.718 | 78 | 38 | 1 | 151 | 226 | 289 | 366 | 3.62e-14 | 73.6 |
| MS.gene23271.t1 | MTR_1g018090 | 45.455 | 88 | 43 | 2 | 135 | 222 | 255 | 337 | 1.03e-13 | 72.0 |
| MS.gene23271.t1 | MTR_7g092540 | 45.783 | 83 | 43 | 1 | 151 | 231 | 234 | 316 | 1.09e-13 | 71.6 |
| MS.gene23271.t1 | MTR_1g070870 | 63.636 | 66 | 23 | 1 | 158 | 223 | 120 | 184 | 1.19e-13 | 70.9 |
| MS.gene23271.t1 | MTR_1g070870 | 63.636 | 66 | 23 | 1 | 158 | 223 | 123 | 187 | 1.30e-13 | 70.9 |
| MS.gene23271.t1 | MTR_7g099540 | 37.984 | 129 | 59 | 5 | 108 | 228 | 206 | 321 | 3.31e-13 | 70.9 |
| MS.gene23271.t1 | MTR_7g092540 | 47.945 | 73 | 36 | 1 | 151 | 221 | 234 | 306 | 6.71e-13 | 68.9 |
| MS.gene23271.t1 | MTR_1g019240 | 40.909 | 88 | 50 | 2 | 138 | 224 | 64 | 150 | 1.78e-12 | 67.4 |
| MS.gene23271.t1 | MTR_3g028520 | 49.231 | 65 | 33 | 0 | 158 | 222 | 322 | 386 | 3.56e-12 | 67.4 |
| MS.gene23271.t1 | MTR_3g027650 | 49.231 | 65 | 33 | 0 | 158 | 222 | 322 | 386 | 3.56e-12 | 67.4 |
| MS.gene23271.t1 | MTR_7g111320 | 34.706 | 170 | 99 | 7 | 124 | 286 | 396 | 560 | 4.56e-12 | 67.8 |
| MS.gene23271.t1 | MTR_8g036235 | 47.692 | 65 | 34 | 0 | 158 | 222 | 316 | 380 | 6.88e-12 | 66.6 |
| MS.gene23271.t1 | MTR_7g099540 | 37.097 | 124 | 57 | 5 | 108 | 223 | 206 | 316 | 1.62e-11 | 65.9 |
| MS.gene23271.t1 | MTR_3g027650 | 50.000 | 62 | 31 | 0 | 158 | 219 | 322 | 383 | 1.75e-11 | 65.5 |
| MS.gene23271.t1 | MTR_3g449770 | 36.893 | 103 | 60 | 3 | 160 | 259 | 311 | 411 | 3.07e-11 | 65.1 |
| MS.gene23271.t1 | MTR_5g005110 | 34.146 | 123 | 63 | 3 | 100 | 222 | 183 | 287 | 4.58e-11 | 63.5 |
| MS.gene23271.t1 | MTR_3g103030 | 51.562 | 64 | 30 | 1 | 159 | 222 | 230 | 292 | 5.63e-11 | 63.5 |
| MS.gene23271.t1 | MTR_7g110810 | 43.939 | 66 | 36 | 1 | 169 | 234 | 213 | 277 | 6.84e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23271.t1 | AT4G34530 | 39.118 | 363 | 139 | 11 | 12 | 329 | 5 | 330 | 3.95e-59 | 194 |
| MS.gene23271.t1 | AT2G18300 | 59.627 | 161 | 55 | 5 | 89 | 248 | 124 | 275 | 3.70e-52 | 176 |
| MS.gene23271.t1 | AT2G18300 | 60.897 | 156 | 51 | 5 | 89 | 243 | 124 | 270 | 3.55e-51 | 174 |
| MS.gene23271.t1 | AT1G68920 | 39.869 | 306 | 136 | 8 | 75 | 358 | 205 | 484 | 4.81e-51 | 177 |
| MS.gene23271.t1 | AT1G68920 | 41.297 | 293 | 124 | 7 | 79 | 358 | 228 | 485 | 6.36e-51 | 177 |
| MS.gene23271.t1 | AT1G68920 | 41.297 | 293 | 124 | 7 | 79 | 358 | 228 | 485 | 6.36e-51 | 177 |
| MS.gene23271.t1 | AT1G68920 | 41.297 | 293 | 124 | 7 | 79 | 358 | 228 | 485 | 6.36e-51 | 177 |
| MS.gene23271.t1 | AT2G18300 | 60.897 | 156 | 51 | 5 | 89 | 243 | 124 | 270 | 1.01e-50 | 173 |
| MS.gene23271.t1 | AT3G07340 | 53.093 | 194 | 70 | 4 | 78 | 271 | 195 | 367 | 1.70e-50 | 174 |
| MS.gene23271.t1 | AT3G07340 | 53.093 | 194 | 70 | 4 | 78 | 271 | 195 | 367 | 1.84e-50 | 175 |
| MS.gene23271.t1 | AT3G23690 | 56.742 | 178 | 67 | 4 | 106 | 281 | 140 | 309 | 4.23e-49 | 169 |
| MS.gene23271.t1 | AT1G26260 | 57.325 | 157 | 56 | 1 | 101 | 257 | 126 | 271 | 1.52e-48 | 167 |
| MS.gene23271.t1 | AT5G48560 | 49.495 | 198 | 94 | 3 | 54 | 245 | 192 | 389 | 2.43e-48 | 169 |
| MS.gene23271.t1 | AT1G26260 | 57.325 | 157 | 56 | 1 | 101 | 257 | 155 | 300 | 4.33e-48 | 167 |
| MS.gene23271.t1 | AT5G48560 | 49.495 | 198 | 94 | 3 | 54 | 245 | 192 | 389 | 4.96e-48 | 169 |
| MS.gene23271.t1 | AT1G26260 | 57.325 | 157 | 56 | 1 | 101 | 257 | 177 | 322 | 7.00e-48 | 166 |
| MS.gene23271.t1 | AT1G26260 | 57.325 | 157 | 56 | 1 | 101 | 257 | 177 | 322 | 7.00e-48 | 166 |
| MS.gene23271.t1 | AT1G26260 | 57.325 | 157 | 56 | 1 | 101 | 257 | 177 | 322 | 7.00e-48 | 166 |
| MS.gene23271.t1 | AT1G26260 | 57.325 | 157 | 56 | 1 | 101 | 257 | 177 | 322 | 7.00e-48 | 166 |
| MS.gene23271.t1 | AT4G36540 | 53.254 | 169 | 58 | 4 | 89 | 257 | 93 | 240 | 1.73e-47 | 163 |
| MS.gene23271.t1 | AT4G36540 | 56.129 | 155 | 47 | 4 | 89 | 243 | 93 | 226 | 1.41e-46 | 160 |
| MS.gene23271.t1 | AT1G10120 | 46.544 | 217 | 78 | 5 | 123 | 339 | 174 | 352 | 4.67e-46 | 161 |
| MS.gene23271.t1 | AT1G10120 | 46.544 | 217 | 78 | 5 | 123 | 339 | 174 | 352 | 4.67e-46 | 161 |
| MS.gene23271.t1 | AT1G59640 | 63.636 | 132 | 41 | 2 | 124 | 249 | 97 | 227 | 6.80e-45 | 155 |
| MS.gene23271.t1 | AT2G42300 | 71.134 | 97 | 28 | 0 | 148 | 244 | 175 | 271 | 1.07e-43 | 152 |
| MS.gene23271.t1 | AT1G59640 | 65.354 | 127 | 37 | 2 | 124 | 244 | 97 | 222 | 2.90e-43 | 153 |
| MS.gene23271.t1 | AT3G57800 | 63.415 | 123 | 40 | 2 | 149 | 271 | 195 | 312 | 3.50e-43 | 154 |
| MS.gene23271.t1 | AT5G50915 | 54.777 | 157 | 53 | 6 | 109 | 259 | 85 | 229 | 6.09e-43 | 150 |
| MS.gene23271.t1 | AT5G50915 | 54.777 | 157 | 53 | 6 | 109 | 259 | 85 | 229 | 6.09e-43 | 150 |
| MS.gene23271.t1 | AT5G50915 | 54.777 | 157 | 53 | 6 | 109 | 259 | 85 | 229 | 2.36e-42 | 149 |
| MS.gene23271.t1 | AT5G50915 | 54.777 | 157 | 53 | 6 | 109 | 259 | 85 | 229 | 2.36e-42 | 149 |
| MS.gene23271.t1 | AT2G42300 | 70.833 | 96 | 28 | 0 | 148 | 243 | 175 | 270 | 3.52e-42 | 150 |
| MS.gene23271.t1 | AT5G62610 | 77.647 | 85 | 15 | 1 | 149 | 229 | 140 | 224 | 1.53e-37 | 136 |
| MS.gene23271.t1 | AT5G62610 | 77.647 | 85 | 15 | 1 | 149 | 229 | 140 | 224 | 1.53e-37 | 136 |
| MS.gene23271.t1 | AT1G18400 | 76.250 | 80 | 19 | 0 | 156 | 235 | 143 | 222 | 2.34e-35 | 129 |
| MS.gene23271.t1 | AT1G18400 | 76.250 | 80 | 19 | 0 | 156 | 235 | 143 | 222 | 4.10e-35 | 129 |
| MS.gene23271.t1 | AT1G73830 | 77.215 | 79 | 18 | 0 | 157 | 235 | 146 | 224 | 6.56e-35 | 129 |
| MS.gene23271.t1 | AT1G73830 | 77.215 | 79 | 18 | 0 | 157 | 235 | 146 | 224 | 7.39e-35 | 129 |
| MS.gene23271.t1 | AT3G57800 | 45.882 | 170 | 40 | 3 | 149 | 271 | 195 | 359 | 2.39e-34 | 131 |
| MS.gene23271.t1 | AT1G25330 | 64.286 | 98 | 34 | 1 | 149 | 245 | 94 | 191 | 3.25e-34 | 126 |
| MS.gene23271.t1 | AT5G58010 | 60.000 | 90 | 28 | 3 | 148 | 233 | 92 | 177 | 6.36e-23 | 97.4 |
| MS.gene23271.t1 | AT2G24260 | 56.471 | 85 | 36 | 1 | 139 | 223 | 16 | 99 | 3.23e-22 | 94.7 |
| MS.gene23271.t1 | AT4G30980 | 71.212 | 66 | 18 | 1 | 158 | 223 | 130 | 194 | 8.54e-22 | 94.7 |
| MS.gene23271.t1 | AT4G30980 | 71.212 | 66 | 18 | 1 | 158 | 223 | 178 | 242 | 1.39e-21 | 94.7 |
| MS.gene23271.t1 | AT2G24260 | 56.471 | 85 | 36 | 1 | 139 | 223 | 119 | 202 | 2.22e-21 | 94.4 |
| MS.gene23271.t1 | AT2G42300 | 70.000 | 50 | 15 | 0 | 148 | 197 | 175 | 224 | 3.49e-18 | 82.8 |
| MS.gene23271.t1 | AT2G42300 | 70.000 | 50 | 15 | 0 | 148 | 197 | 175 | 224 | 3.49e-18 | 82.8 |
| MS.gene23271.t1 | AT2G42300 | 70.000 | 50 | 15 | 0 | 148 | 197 | 175 | 224 | 4.47e-18 | 82.8 |
| MS.gene23271.t1 | AT2G20180 | 53.968 | 63 | 28 | 1 | 161 | 223 | 210 | 271 | 2.51e-14 | 73.9 |
| MS.gene23271.t1 | AT2G20180 | 53.968 | 63 | 28 | 1 | 161 | 223 | 210 | 271 | 2.51e-14 | 73.9 |
| MS.gene23271.t1 | AT2G20180 | 53.968 | 63 | 28 | 1 | 161 | 223 | 210 | 271 | 2.51e-14 | 73.9 |
| MS.gene23271.t1 | AT2G20180 | 53.968 | 63 | 28 | 1 | 161 | 223 | 281 | 342 | 2.72e-14 | 74.3 |
| MS.gene23271.t1 | AT2G20180 | 53.968 | 63 | 28 | 1 | 161 | 223 | 281 | 342 | 2.72e-14 | 74.3 |
| MS.gene23271.t1 | AT2G20180 | 53.968 | 63 | 28 | 1 | 161 | 223 | 281 | 342 | 2.72e-14 | 74.3 |
| MS.gene23271.t1 | AT2G20180 | 53.968 | 63 | 28 | 1 | 161 | 223 | 281 | 342 | 2.72e-14 | 74.3 |
| MS.gene23271.t1 | AT1G09530 | 46.479 | 71 | 37 | 1 | 153 | 223 | 332 | 401 | 4.42e-14 | 73.6 |
| MS.gene23271.t1 | AT1G09530 | 46.479 | 71 | 37 | 1 | 153 | 223 | 332 | 401 | 4.42e-14 | 73.6 |
| MS.gene23271.t1 | AT1G09530 | 46.479 | 71 | 37 | 1 | 153 | 223 | 332 | 401 | 4.42e-14 | 73.6 |
| MS.gene23271.t1 | AT1G09530 | 46.479 | 71 | 37 | 1 | 153 | 223 | 332 | 401 | 4.42e-14 | 73.6 |
| MS.gene23271.t1 | AT1G09530 | 46.479 | 71 | 37 | 1 | 153 | 223 | 332 | 401 | 4.42e-14 | 73.6 |
| MS.gene23271.t1 | AT1G09530 | 46.479 | 71 | 37 | 1 | 153 | 223 | 332 | 401 | 4.42e-14 | 73.6 |
| MS.gene23271.t1 | AT4G09180 | 50.746 | 67 | 33 | 0 | 156 | 222 | 182 | 248 | 6.81e-14 | 71.2 |
| MS.gene23271.t1 | AT2G42280 | 37.705 | 122 | 70 | 3 | 102 | 221 | 227 | 344 | 8.66e-14 | 72.0 |
| MS.gene23271.t1 | AT2G42280 | 36.667 | 120 | 72 | 2 | 102 | 221 | 227 | 342 | 8.69e-14 | 72.0 |
| MS.gene23271.t1 | AT4G28790 | 35.043 | 117 | 67 | 3 | 160 | 275 | 273 | 381 | 9.97e-14 | 72.4 |
| MS.gene23271.t1 | AT1G51140 | 54.688 | 64 | 29 | 0 | 158 | 221 | 304 | 367 | 1.18e-13 | 72.0 |
| MS.gene23271.t1 | AT4G02590 | 51.724 | 87 | 33 | 2 | 145 | 223 | 62 | 147 | 1.68e-13 | 70.1 |
| MS.gene23271.t1 | AT4G28800 | 32.667 | 150 | 77 | 5 | 119 | 267 | 224 | 350 | 2.04e-13 | 71.6 |
| MS.gene23271.t1 | AT4G02590 | 51.724 | 87 | 33 | 2 | 145 | 223 | 125 | 210 | 2.68e-13 | 70.1 |
| MS.gene23271.t1 | AT4G02590 | 51.724 | 87 | 33 | 2 | 145 | 223 | 125 | 210 | 2.68e-13 | 70.1 |
| MS.gene23271.t1 | AT1G03040 | 62.121 | 66 | 24 | 1 | 158 | 223 | 139 | 203 | 3.34e-13 | 69.7 |
| MS.gene23271.t1 | AT1G35460 | 50.769 | 65 | 32 | 0 | 158 | 222 | 181 | 245 | 3.37e-13 | 69.3 |
| MS.gene23271.t1 | AT1G03040 | 62.121 | 66 | 24 | 1 | 158 | 223 | 144 | 208 | 3.63e-13 | 69.7 |
| MS.gene23271.t1 | AT4G28815 | 55.172 | 58 | 25 | 1 | 161 | 218 | 71 | 127 | 4.32e-13 | 68.6 |
| MS.gene23271.t1 | AT2G20180 | 52.459 | 61 | 28 | 1 | 160 | 220 | 280 | 339 | 5.18e-13 | 69.7 |
| MS.gene23271.t1 | AT1G03040 | 62.121 | 66 | 24 | 1 | 158 | 223 | 144 | 208 | 6.45e-13 | 69.3 |
| MS.gene23271.t1 | AT4G28815 | 48.571 | 70 | 34 | 2 | 161 | 229 | 147 | 215 | 1.15e-12 | 68.2 |
| MS.gene23271.t1 | AT1G27740 | 38.938 | 113 | 68 | 1 | 110 | 222 | 119 | 230 | 2.22e-12 | 67.0 |
| MS.gene23271.t1 | AT4G28800 | 39.604 | 101 | 46 | 3 | 119 | 219 | 236 | 321 | 1.03e-11 | 66.2 |
| MS.gene23271.t1 | AT2G46970 | 41.250 | 80 | 41 | 2 | 156 | 230 | 216 | 294 | 1.27e-11 | 65.9 |
| MS.gene23271.t1 | AT2G46970 | 41.250 | 80 | 41 | 2 | 156 | 230 | 185 | 263 | 1.35e-11 | 65.9 |
| MS.gene23271.t1 | AT2G46970 | 41.250 | 80 | 41 | 2 | 156 | 230 | 194 | 272 | 1.41e-11 | 65.9 |
| MS.gene23271.t1 | AT2G14760 | 39.655 | 116 | 56 | 4 | 117 | 222 | 189 | 300 | 1.48e-11 | 65.1 |
| MS.gene23271.t1 | AT4G33880 | 43.011 | 93 | 49 | 3 | 133 | 222 | 238 | 329 | 4.52e-11 | 63.9 |
| MS.gene23271.t1 | AT4G00050 | 49.231 | 65 | 32 | 1 | 158 | 222 | 105 | 168 | 7.89e-11 | 62.8 |
Find 63 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGTTTGCTCAGTGATTT+TGG | 0.069577 | 4.3:+35128063 | None:intergenic |
| CACTTTGATCCTCTTGTCTT+TGG | 0.165749 | 4.3:+35128105 | None:intergenic |
| GGGATAGTCCCTCCGGAAAT+TGG | 0.186320 | 4.3:-35126774 | MS.gene23271:CDS |
| TTACATTGTCTTAACACTTC+TGG | 0.231856 | 4.3:-35128400 | MS.gene23271:CDS |
| GACATTTCTGATTGCATCAT+TGG | 0.242720 | 4.3:+35126870 | None:intergenic |
| TTCCTTCGAACCCCAATTTC+CGG | 0.243538 | 4.3:+35126762 | None:intergenic |
| AATTTGTATCTACCTGTAAA+TGG | 0.288243 | 4.3:+35126483 | None:intergenic |
| TTTCCTTCTCAACCATTTAC+AGG | 0.299320 | 4.3:-35126495 | MS.gene23271:intron |
| GATGAGTCAAGAAAGATTTC+AGG | 0.310824 | 4.3:+35126711 | None:intergenic |
| GTTGGTTGTGATTCTGCTCT+TGG | 0.325858 | 4.3:-35128226 | MS.gene23271:CDS |
| GCATTGTGTCCATACCTCTT+TGG | 0.342272 | 4.3:+35127146 | None:intergenic |
| TGGTGGATTGATAAACAATA+TGG | 0.350380 | 4.3:-35126796 | MS.gene23271:CDS |
| GGATAGTCCCTCCGGAAATT+GGG | 0.350458 | 4.3:-35126773 | MS.gene23271:CDS |
| AACAAAATTGCAGGCAAAGC+TGG | 0.365496 | 4.3:-35127427 | MS.gene23271:CDS |
| CAACACTGTCATGTCGGAAA+TGG | 0.383436 | 4.3:+35128360 | None:intergenic |
| CAATGTTGAAGTCAAGTCTT+GGG | 0.403046 | 4.3:+35127181 | None:intergenic |
| CCAGGATGTAACAAAATTGC+AGG | 0.430070 | 4.3:-35127436 | MS.gene23271:CDS |
| TGATGAATTGTTTGCCAAAG+AGG | 0.438799 | 4.3:-35127160 | MS.gene23271:intron |
| GCTCGAACATGAATGTAATC+AGG | 0.466193 | 4.3:+35127947 | None:intergenic |
| TCAATGTTGAAGTCAAGTCT+TGG | 0.479932 | 4.3:+35127180 | None:intergenic |
| GAATTGAATTGAAGATATGC+AGG | 0.482069 | 4.3:+35126843 | None:intergenic |
| ATCAAAGTGAGTGTTGAAGA+AGG | 0.498660 | 4.3:-35128091 | MS.gene23271:CDS |
| TCGAAGAAACCATTAAGAAA+AGG | 0.502237 | 4.3:-35128156 | MS.gene23271:CDS |
| AACACTTCTGGAAATCTAGT+AGG | 0.504501 | 4.3:-35128388 | MS.gene23271:CDS |
| ATATCCTACCATCCTCAACT+TGG | 0.507057 | 4.3:-35126575 | MS.gene23271:CDS |
| AAAATCACCTTCCCAAGTTG+AGG | 0.508180 | 4.3:+35126563 | None:intergenic |
| CAATATGGGGATAGTCCCTC+CGG | 0.510922 | 4.3:-35126781 | MS.gene23271:CDS |
| TATTTGCAAGATTTAGTACC+AGG | 0.510967 | 4.3:-35127454 | MS.gene23271:CDS |
| GGTGGATTGATAAACAATAT+GGG | 0.517497 | 4.3:-35126795 | MS.gene23271:CDS |
| TAACTCTATGAAACCCGACC+CGG | 0.524469 | 4.3:-35128191 | MS.gene23271:CDS |
| TGAAGCTAGCAATCTGAAGA+TGG | 0.529573 | 4.3:-35126161 | MS.gene23271:CDS |
| GTTCGTGTTCATGTTCATGT+TGG | 0.539052 | 4.3:+35128311 | None:intergenic |
| GTCTCTTCAAAGACAAGTTG+AGG | 0.543289 | 4.3:-35127374 | MS.gene23271:intron |
| CAACAACTAGTTTCATGTTG+TGG | 0.545151 | 4.3:-35126816 | MS.gene23271:CDS |
| AGAGAAAATTGTGATGATGT+TGG | 0.545309 | 4.3:-35128013 | MS.gene23271:CDS |
| CTCCGGAAATTGGGGTTCGA+AGG | 0.548238 | 4.3:-35126764 | MS.gene23271:CDS |
| CTACCTGTAAATGGTTGAGA+AGG | 0.549856 | 4.3:+35126492 | None:intergenic |
| CATTTCCGACATGACAGTGT+TGG | 0.552355 | 4.3:-35128359 | MS.gene23271:CDS |
| CTTCCCAAGTTGAGGATGGT+AGG | 0.556292 | 4.3:+35126571 | None:intergenic |
| CAACTAGTTTCATGTTGTGG+TGG | 0.563540 | 4.3:-35126813 | MS.gene23271:CDS |
| AAAATCACTGAGCAAACAAA+GGG | 0.564488 | 4.3:-35128061 | MS.gene23271:CDS |
| GATAGTCCCTCCGGAAATTG+GGG | 0.565816 | 4.3:-35126772 | MS.gene23271:CDS |
| TTGTGATGATGTTGGTTCCA+AGG | 0.568124 | 4.3:-35128005 | MS.gene23271:CDS |
| TCAGGTAAAGATGCAGATGC+CGG | 0.578456 | 4.3:+35126729 | None:intergenic |
| TCGAAGGAACATTAATGCAC+CGG | 0.582886 | 4.3:-35126748 | MS.gene23271:CDS |
| CAAAATCACTGAGCAAACAA+AGG | 0.583100 | 4.3:-35128062 | MS.gene23271:CDS |
| CTACCATCCTCAACTTGGGA+AGG | 0.586675 | 4.3:-35126570 | MS.gene23271:CDS |
| GGTTCCAAGGAAAATTCGAA+AGG | 0.600922 | 4.3:-35127992 | MS.gene23271:CDS |
| TATCCTACCATCCTCAACTT+GGG | 0.602359 | 4.3:-35126574 | MS.gene23271:CDS |
| AATTGAATTGAAGATATGCA+GGG | 0.606589 | 4.3:+35126844 | None:intergenic |
| TCTTTCCAACACTGTCATGT+CGG | 0.609762 | 4.3:+35128354 | None:intergenic |
| ACTTCTGGAAATCTAGTAGG+AGG | 0.609823 | 4.3:-35128385 | MS.gene23271:CDS |
| TCACCTTCCCAAGTTGAGGA+TGG | 0.614865 | 4.3:+35126567 | None:intergenic |
| CTTCGAACCCCAATTTCCGG+AGG | 0.622595 | 4.3:+35126765 | None:intergenic |
| TTCGAACCCCAATTTCCGGA+GGG | 0.626102 | 4.3:+35126766 | None:intergenic |
| TGTTGGAAAGACAAAGAGCA+AGG | 0.628279 | 4.3:-35128342 | MS.gene23271:CDS |
| AACTCTATGAAACCCGACCC+GGG | 0.629719 | 4.3:-35128190 | MS.gene23271:CDS |
| GAAAAGGAAAGCTGATAACA+AGG | 0.638853 | 4.3:-35128140 | MS.gene23271:CDS |
| ATATAAAGTCCAAAGACAAG+AGG | 0.657536 | 4.3:-35128114 | MS.gene23271:CDS |
| ATTCATGTTCGAGCACGTCG+CGG | 0.664373 | 4.3:-35127938 | MS.gene23271:CDS |
| GTGGATTGATAAACAATATG+GGG | 0.684555 | 4.3:-35126794 | MS.gene23271:CDS |
| AAGGAAAGCTGATAACAAGG+TGG | 0.715030 | 4.3:-35128137 | MS.gene23271:CDS |
| CATTTCCCGAAAAGTAACGT+CGG | 0.737392 | 4.3:+35128275 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAGTTTAAGTTTATAATA+TGG | - | chr4.3:35127261-35127280 | MS.gene23271:intron | 10.0% |
| !!! | TTTTACTAAATTGTTTAATT+TGG | - | chr4.3:35126879-35126898 | MS.gene23271:CDS | 10.0% |
| !! | AATCATATTAATGATTGATT+AGG | + | chr4.3:35127922-35127941 | None:intergenic | 15.0% |
| !! | TTAAATTATTTGATCTTTAC+AGG | - | chr4.3:35127646-35127665 | MS.gene23271:intron | 15.0% |
| !!! | ATTTTATGGTTTTAGTAAAA+AGG | - | chr4.3:35127436-35127455 | MS.gene23271:CDS | 15.0% |
| !! | ATGATTGAAAGTTGAAAATT+CGG | - | chr4.3:35128275-35128294 | MS.gene23271:CDS | 20.0% |
| !! | ATGCTAAAATTACAGTTAAT+AGG | - | chr4.3:35126906-35126925 | MS.gene23271:intron | 20.0% |
| !! | GTATGATAAATTAGTTACTT+AGG | - | chr4.3:35127216-35127235 | MS.gene23271:intron | 20.0% |
| !! | TAGTAAAAAATGATGTAACA+CGG | - | chr4.3:35126780-35126799 | MS.gene23271:CDS | 20.0% |
| !!! | AAATCTTCATTTTGATGAAA+AGG | + | chr4.3:35128224-35128243 | None:intergenic | 20.0% |
| !!! | TCTCTTAATTTGTCATTATT+TGG | - | chr4.3:35126709-35126728 | MS.gene23271:CDS | 20.0% |
| !!! | TGATTTTTCTGTTTATTACT+CGG | - | chr4.3:35127011-35127030 | MS.gene23271:intron | 20.0% |
| ! | AATTGAATTGAAGATATGCA+GGG | + | chr4.3:35127715-35127734 | None:intergenic | 25.0% |
| ! | AATTTGTATCTACCTGTAAA+TGG | + | chr4.3:35128076-35128095 | None:intergenic | 25.0% |
| ! | ACACTTATTATGTGCAATAT+AGG | - | chr4.3:35126977-35126996 | MS.gene23271:intron | 25.0% |
| ! | CTAAAATTACAGTTAATAGG+AGG | - | chr4.3:35126909-35126928 | MS.gene23271:intron | 25.0% |
| !! | ATCTTCACAACAATTTTTGA+TGG | - | chr4.3:35126308-35126327 | MS.gene23271:intron | 25.0% |
| !! | TTTTCAAAATCTTCATAGTG+TGG | - | chr4.3:35128012-35128031 | MS.gene23271:CDS | 25.0% |
| !!! | GATTAGGAACAATATTTTAG+AGG | + | chr4.3:35127906-35127925 | None:intergenic | 25.0% |
| AAAATCACTGAGCAAACAAA+GGG | - | chr4.3:35126495-35126514 | MS.gene23271:intron | 30.0% | |
| AAAGGACTTATCAATATCTG+TGG | + | chr4.3:35128206-35128225 | None:intergenic | 30.0% | |
| AAGGACTTATCAATATCTGT+GGG | + | chr4.3:35128205-35128224 | None:intergenic | 30.0% | |
| ATATAAAGTCCAAAGACAAG+AGG | - | chr4.3:35126442-35126461 | MS.gene23271:intron | 30.0% | |
| GAATTGAATTGAAGATATGC+AGG | + | chr4.3:35127716-35127735 | None:intergenic | 30.0% | |
| GTTTATTACTCGGAGTTTAA+AGG | - | chr4.3:35127021-35127040 | MS.gene23271:intron | 30.0% | |
| TATTTGCAAGATTTAGTACC+AGG | - | chr4.3:35127102-35127121 | MS.gene23271:intron | 30.0% | |
| TCGAAGAAACCATTAAGAAA+AGG | - | chr4.3:35126400-35126419 | MS.gene23271:intron | 30.0% | |
| TCTACATTTGACCGTAATTA+AGG | - | chr4.3:35127519-35127538 | MS.gene23271:intron | 30.0% | |
| TTACATTGTCTTAACACTTC+TGG | - | chr4.3:35126156-35126175 | MS.gene23271:CDS | 30.0% | |
| ! | AGAGAAAATTGTGATGATGT+TGG | - | chr4.3:35126543-35126562 | MS.gene23271:CDS | 30.0% |
| ! | ATCAGCTTTCCTTTTCTTAA+TGG | + | chr4.3:35126412-35126431 | None:intergenic | 30.0% |
| ! | CAAAAAGCGCAAATCATTAA+TGG | + | chr4.3:35127601-35127620 | None:intergenic | 30.0% |
| ! | GGACACAATGCAAAATTTTA+TGG | - | chr4.3:35127422-35127441 | MS.gene23271:CDS | 30.0% |
| ! | GTGGATTGATAAACAATATG+GGG | - | chr4.3:35127762-35127781 | MS.gene23271:intron | 30.0% |
| !! | AGGAACAATATTTTAGAGGA+CGG | + | chr4.3:35127902-35127921 | None:intergenic | 30.0% |
| !! | GGTGGATTGATAAACAATAT+GGG | - | chr4.3:35127761-35127780 | MS.gene23271:intron | 30.0% |
| !! | TCACAACAATTTTTGATGGT+TGG | - | chr4.3:35126312-35126331 | MS.gene23271:intron | 30.0% |
| !! | TGGTGGATTGATAAACAATA+TGG | - | chr4.3:35127760-35127779 | MS.gene23271:intron | 30.0% |
| !!! | ATGTTTTGTTTTATGACTGC+AGG | - | chr4.3:35128366-35128385 | MS.gene23271:CDS | 30.0% |
| AATTGTTTGCCAAAGAGGTA+TGG | - | chr4.3:35127401-35127420 | MS.gene23271:CDS | 35.0% | |
| AGATGATACAGCCTTAATCA+CGG | + | chr4.3:35127502-35127521 | None:intergenic | 35.0% | |
| AGGACTTATCAATATCTGTG+GGG | + | chr4.3:35128204-35128223 | None:intergenic | 35.0% | |
| CAAAATCACTGAGCAAACAA+AGG | - | chr4.3:35126494-35126513 | MS.gene23271:intron | 35.0% | |
| CAATGTTGAAGTCAAGTCTT+GGG | + | chr4.3:35127378-35127397 | None:intergenic | 35.0% | |
| CCTTGCAAACCTTTATATTC+CGG | - | chr4.3:35128307-35128326 | MS.gene23271:CDS | 35.0% | |
| CTTTATATTCCGGAAAAACG+CGG | - | chr4.3:35128317-35128336 | MS.gene23271:CDS | 35.0% | |
| GAAAAGGAAAGCTGATAACA+AGG | - | chr4.3:35126416-35126435 | MS.gene23271:intron | 35.0% | |
| GAAGGGAAAAAATAAGCGAA+AGG | - | chr4.3:35127073-35127092 | MS.gene23271:intron | 35.0% | |
| GACATTTCTGATTGCATCAT+TGG | + | chr4.3:35127689-35127708 | None:intergenic | 35.0% | |
| GACTCATAACGCCTTAATTA+CGG | + | chr4.3:35127533-35127552 | None:intergenic | 35.0% | |
| GATGAGTCAAGAAAGATTTC+AGG | + | chr4.3:35127848-35127867 | None:intergenic | 35.0% | |
| TATCCATCAATCATGATCGT+CGG | + | chr4.3:35126819-35126838 | None:intergenic | 35.0% | |
| TCAATGTTGAAGTCAAGTCT+TGG | + | chr4.3:35127379-35127398 | None:intergenic | 35.0% | |
| TCATTGACAAGAACTGCATT+TGG | + | chr4.3:35127339-35127358 | None:intergenic | 35.0% | |
| TCTCAAGTCTCTATCATCTA+TGG | + | chr4.3:35128180-35128199 | None:intergenic | 35.0% | |
| TGATGAATTGTTTGCCAAAG+AGG | - | chr4.3:35127396-35127415 | MS.gene23271:CDS | 35.0% | |
| TTTCCTTCTCAACCATTTAC+AGG | - | chr4.3:35128061-35128080 | MS.gene23271:CDS | 35.0% | |
| ! | AACACTTCTGGAAATCTAGT+AGG | - | chr4.3:35126168-35126187 | MS.gene23271:CDS | 35.0% |
| ! | ATGTGCAATATAGGTTAGCT+CGG | - | chr4.3:35126986-35127005 | MS.gene23271:intron | 35.0% |
| ! | CAACAACTAGTTTCATGTTG+TGG | - | chr4.3:35127740-35127759 | MS.gene23271:intron | 35.0% |
| ! | TGAACCTTTCGAATTTTCCT+TGG | + | chr4.3:35126571-35126590 | None:intergenic | 35.0% |
| !! | ATCAAAGTGAGTGTTGAAGA+AGG | - | chr4.3:35126465-35126484 | MS.gene23271:intron | 35.0% |
| !! | CATAGTGTGGATTTTGATCA+AGG | - | chr4.3:35128025-35128044 | MS.gene23271:CDS | 35.0% |
| !! | CTTTCTACTTCTAAGATTGC+AGG | + | chr4.3:35128129-35128148 | None:intergenic | 35.0% |
| !! | CTTTGTTTGCTCAGTGATTT+TGG | + | chr4.3:35126496-35126515 | None:intergenic | 35.0% |
| AAAATCACCTTCCCAAGTTG+AGG | + | chr4.3:35127996-35128015 | None:intergenic | 40.0% | |
| AAAGGTTTGCAAGGTAACCA+CGG | + | chr4.3:35128301-35128320 | None:intergenic | 40.0% | |
| AACAAAATTGCAGGCAAAGC+TGG | - | chr4.3:35127129-35127148 | MS.gene23271:intron | 40.0% | |
| AAGGAAAGCTGATAACAAGG+TGG | - | chr4.3:35126419-35126438 | MS.gene23271:intron | 40.0% | |
| ATATCCTACCATCCTCAACT+TGG | - | chr4.3:35127981-35128000 | MS.gene23271:CDS | 40.0% | |
| ATTCCGACGATCATGATTGA+TGG | - | chr4.3:35126813-35126832 | MS.gene23271:CDS | 40.0% | |
| CACTTTGATCCTCTTGTCTT+TGG | + | chr4.3:35126454-35126473 | None:intergenic | 40.0% | |
| CATTTCCCGAAAAGTAACGT+CGG | + | chr4.3:35126284-35126303 | None:intergenic | 40.0% | |
| CCAGGATGTAACAAAATTGC+AGG | - | chr4.3:35127120-35127139 | MS.gene23271:intron | 40.0% | |
| CCGGAATATAAAGGTTTGCA+AGG | + | chr4.3:35128310-35128329 | None:intergenic | 40.0% | |
| CTACCTGTAAATGGTTGAGA+AGG | + | chr4.3:35128067-35128086 | None:intergenic | 40.0% | |
| GCACAAAACAGAACAAACGT+TGG | + | chr4.3:35127047-35127066 | None:intergenic | 40.0% | |
| GCTCGAACATGAATGTAATC+AGG | + | chr4.3:35126612-35126631 | None:intergenic | 40.0% | |
| GGCATCAAAAATCATGATGC+TGG | + | chr4.3:35127469-35127488 | None:intergenic | 40.0% | |
| GGTTCCAAGGAAAATTCGAA+AGG | - | chr4.3:35126564-35126583 | MS.gene23271:CDS | 40.0% | |
| GTCTCTTCAAAGACAAGTTG+AGG | - | chr4.3:35127182-35127201 | MS.gene23271:CDS | 40.0% | |
| GTTCGTGTTCATGTTCATGT+TGG | + | chr4.3:35126248-35126267 | None:intergenic | 40.0% | |
| TATCCTACCATCCTCAACTT+GGG | - | chr4.3:35127982-35128001 | MS.gene23271:CDS | 40.0% | |
| TCGAAGGAACATTAATGCAC+CGG | - | chr4.3:35127808-35127827 | MS.gene23271:intron | 40.0% | |
| TCTTTCCAACACTGTCATGT+CGG | + | chr4.3:35126205-35126224 | None:intergenic | 40.0% | |
| TGAAGCTAGCAATCTGAAGA+TGG | - | chr4.3:35128395-35128414 | MS.gene23271:CDS | 40.0% | |
| TGTTGGAAAGACAAAGAGCA+AGG | - | chr4.3:35126214-35126233 | MS.gene23271:intron | 40.0% | |
| TGTTGTGATTCGCGATATTG+TGG | + | chr4.3:35127575-35127594 | None:intergenic | 40.0% | |
| ! | ACGTTTGTTCTGTTTTGTGC+AGG | - | chr4.3:35127047-35127066 | MS.gene23271:intron | 40.0% |
| ! | ACTTCTGGAAATCTAGTAGG+AGG | - | chr4.3:35126171-35126190 | MS.gene23271:CDS | 40.0% |
| ! | CAACTAGTTTCATGTTGTGG+TGG | - | chr4.3:35127743-35127762 | MS.gene23271:intron | 40.0% |
| ! | CCTGCAATTTTGTTACATCC+TGG | + | chr4.3:35127123-35127142 | None:intergenic | 40.0% |
| ! | CGCGTTTTTCCGGAATATAA+AGG | + | chr4.3:35128319-35128338 | None:intergenic | 40.0% |
| ! | CTGTTTTGTGCAGGTTAGAA+GGG | - | chr4.3:35127056-35127075 | MS.gene23271:intron | 40.0% |
| ! | GCATCATGATTTTTGATGCC+AGG | - | chr4.3:35127469-35127488 | MS.gene23271:CDS | 40.0% |
| ! | TCTGTTTTGTGCAGGTTAGA+AGG | - | chr4.3:35127055-35127074 | MS.gene23271:intron | 40.0% |
| !! | ACTTCTAAGATTGCAGGCTA+AGG | + | chr4.3:35128123-35128142 | None:intergenic | 40.0% |
| !! | GGTTTTAGTAAAAAGGTCCG+CGG | - | chr4.3:35127443-35127462 | MS.gene23271:CDS | 40.0% |
| !! | TTGTGATGATGTTGGTTCCA+AGG | - | chr4.3:35126551-35126570 | MS.gene23271:CDS | 40.0% |
| AAAAATCATGATGCTGGCCG+CGG | + | chr4.3:35127463-35127482 | None:intergenic | 45.0% | |
| AAAACGCGGTAGATTCGATG+CGG | - | chr4.3:35128331-35128350 | MS.gene23271:CDS | 45.0% | |
| CAACACTGTCATGTCGGAAA+TGG | + | chr4.3:35126199-35126218 | None:intergenic | 45.0% | |
| CATTTCCGACATGACAGTGT+TGG | - | chr4.3:35126197-35126216 | MS.gene23271:intron | 45.0% | |
| CGCGATATTGTGGATAATCG+CGG | + | chr4.3:35127565-35127584 | None:intergenic | 45.0% | |
| GAAAGTTGAAAATTCGGCCG+TGG | - | chr4.3:35128281-35128300 | MS.gene23271:CDS | 45.0% | |
| GCATTGTGTCCATACCTCTT+TGG | + | chr4.3:35127413-35127432 | None:intergenic | 45.0% | |
| GTTGGTTGTGATTCTGCTCT+TGG | - | chr4.3:35126330-35126349 | MS.gene23271:intron | 45.0% | |
| TAACTCTATGAAACCCGACC+CGG | - | chr4.3:35126365-35126384 | MS.gene23271:intron | 45.0% | |
| TCAGGTAAAGATGCAGATGC+CGG | + | chr4.3:35127830-35127849 | None:intergenic | 45.0% | |
| TTCCTTCGAACCCCAATTTC+CGG | + | chr4.3:35127797-35127816 | None:intergenic | 45.0% | |
| ! | TCGAATCTACCGCGTTTTTC+CGG | + | chr4.3:35128329-35128348 | None:intergenic | 45.0% |
| ! | TCTTCGACGTTTTCGAAACC+CGG | + | chr4.3:35126387-35126406 | None:intergenic | 45.0% |
| !!! | CAACACCGACGTTACTTTTC+GGG | - | chr4.3:35126276-35126295 | MS.gene23271:intron | 45.0% |
| !!! | CGACGTTACTTTTCGGGAAA+TGG | - | chr4.3:35126282-35126301 | MS.gene23271:intron | 45.0% |
| !!! | GCAACACCGACGTTACTTTT+CGG | - | chr4.3:35126275-35126294 | MS.gene23271:intron | 45.0% |
| AAACGCGGTAGATTCGATGC+GGG | - | chr4.3:35128332-35128351 | MS.gene23271:CDS | 50.0% | |
| AACTCTATGAAACCCGACCC+GGG | - | chr4.3:35126366-35126385 | MS.gene23271:intron | 50.0% | |
| ATTCATGTTCGAGCACGTCG+CGG | - | chr4.3:35126618-35126637 | MS.gene23271:intron | 50.0% | |
| CAATATGGGGATAGTCCCTC+CGG | - | chr4.3:35127775-35127794 | MS.gene23271:intron | 50.0% | |
| CTACCATCCTCAACTTGGGA+AGG | - | chr4.3:35127986-35128005 | MS.gene23271:CDS | 50.0% | |
| GATAGTCCCTCCGGAAATTG+GGG | - | chr4.3:35127784-35127803 | MS.gene23271:intron | 50.0% | |
| GGATAGTCCCTCCGGAAATT+GGG | - | chr4.3:35127783-35127802 | MS.gene23271:intron | 50.0% | |
| TACAGCCTTAATCACGGTCG+TGG | + | chr4.3:35127496-35127515 | None:intergenic | 50.0% | |
| TAGAGGACGGATACACAGAG+AGG | + | chr4.3:35127889-35127908 | None:intergenic | 50.0% | |
| TTCGAACCCCAATTTCCGGA+GGG | + | chr4.3:35127793-35127812 | None:intergenic | 50.0% | |
| ! | CTTCCCAAGTTGAGGATGGT+AGG | + | chr4.3:35127988-35128007 | None:intergenic | 50.0% |
| ! | CTTCGACGTTTTCGAAACCC+GGG | + | chr4.3:35126386-35126405 | None:intergenic | 50.0% |
| ! | TCACCTTCCCAAGTTGAGGA+TGG | + | chr4.3:35127992-35128011 | None:intergenic | 50.0% |
| CAGGTCCACGACCGTGATTA+AGG | - | chr4.3:35127488-35127507 | MS.gene23271:CDS | 55.0% | |
| CTCCGGAAATTGGGGTTCGA+AGG | - | chr4.3:35127792-35127811 | MS.gene23271:intron | 55.0% | |
| CTTAATCACGGTCGTGGACC+TGG | + | chr4.3:35127490-35127509 | None:intergenic | 55.0% | |
| CTTCGAACCCCAATTTCCGG+AGG | + | chr4.3:35127794-35127813 | None:intergenic | 55.0% | |
| GGGATAGTCCCTCCGGAAAT+TGG | - | chr4.3:35127782-35127801 | MS.gene23271:intron | 55.0% | |
| ! | ACGTTTTCGAAACCCGGGTC+GGG | + | chr4.3:35126381-35126400 | None:intergenic | 55.0% |
| ! | GACGTTTTCGAAACCCGGGT+CGG | + | chr4.3:35126382-35126401 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 35126153 | 35128425 | 35126153 | ID=MS.gene23271 |
| chr4.3 | mRNA | 35126153 | 35128425 | 35126153 | ID=MS.gene23271.t1;Parent=MS.gene23271 |
| chr4.3 | exon | 35127904 | 35128425 | 35127904 | ID=MS.gene23271.t1.exon1;Parent=MS.gene23271.t1 |
| chr4.3 | CDS | 35127904 | 35128425 | 35127904 | ID=cds.MS.gene23271.t1;Parent=MS.gene23271.t1 |
| chr4.3 | exon | 35127375 | 35127509 | 35127375 | ID=MS.gene23271.t1.exon2;Parent=MS.gene23271.t1 |
| chr4.3 | CDS | 35127375 | 35127509 | 35127375 | ID=cds.MS.gene23271.t1;Parent=MS.gene23271.t1 |
| chr4.3 | exon | 35127161 | 35127232 | 35127161 | ID=MS.gene23271.t1.exon3;Parent=MS.gene23271.t1 |
| chr4.3 | CDS | 35127161 | 35127232 | 35127161 | ID=cds.MS.gene23271.t1;Parent=MS.gene23271.t1 |
| chr4.3 | exon | 35126701 | 35126910 | 35126701 | ID=MS.gene23271.t1.exon4;Parent=MS.gene23271.t1 |
| chr4.3 | CDS | 35126701 | 35126910 | 35126701 | ID=cds.MS.gene23271.t1;Parent=MS.gene23271.t1 |
| chr4.3 | exon | 35126496 | 35126598 | 35126496 | ID=MS.gene23271.t1.exon5;Parent=MS.gene23271.t1 |
| chr4.3 | CDS | 35126496 | 35126598 | 35126496 | ID=cds.MS.gene23271.t1;Parent=MS.gene23271.t1 |
| chr4.3 | exon | 35126153 | 35126190 | 35126153 | ID=MS.gene23271.t1.exon6;Parent=MS.gene23271.t1 |
| chr4.3 | CDS | 35126153 | 35126190 | 35126153 | ID=cds.MS.gene23271.t1;Parent=MS.gene23271.t1 |
| Gene Sequence |
| Protein sequence |
