AlfalfaGEDB | MS.gene07904

M. sativa cultivar XinJiangDaYe / MS.gene07904

KEGG: -
GO: GO:0003674 GO:0005488 GO:0030145 GO:0043167 GO:0043169 GO:0045735 GO:0046872 GO:0046914
PFAM: PF00190.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07904.t1	XP_003627273.1	99	208	2	0	1	208	1	208	8.40E-107	396.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07904.t1	P94040	67.8	208	67	0	1	208	1	208	6.2e-74	278.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07904.t1	G7L6U5	99.0	208	2	0	1	208	1	208	6.1e-107	396.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene07904	0.834778	2.46E-56	-1.69E-46
MS.gene049171	MS.gene07904	0.829593	4.72E-55	-1.69E-46
MS.gene049173	MS.gene07904	0.807783	4.27E-50	-1.69E-46
MS.gene049217	MS.gene07904	0.860457	2.04E-63	-1.69E-46
MS.gene049222	MS.gene07904	0.852122	5.68E-61	-1.69E-46
MS.gene049285	MS.gene07904	0.874728	5.38E-68	-1.69E-46
MS.gene049320	MS.gene07904	0.876541	1.29E-68	-1.69E-46
MS.gene049427	MS.gene07904	0.841037	6.06E-58	-1.69E-46
MS.gene049609	MS.gene07904	0.828855	7.13E-55	-1.69E-46
MS.gene049614	MS.gene07904	0.80006	1.72E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07904.t1	MTR_8g020590	99.038	208	2	0	1	208	1	208	1.96e-147	408
MS.gene07904.t1	MTR_2g041550	68.269	208	65	1	1	208	4	210	7.65e-95	275
MS.gene07904.t1	MTR_2g041570	64.904	208	73	0	1	208	3	210	2.67e-92	269
MS.gene07904.t1	MTR_2g041580	64.423	208	74	0	1	208	3	210	3.38e-91	266
MS.gene07904.t1	MTR_8g020610	58.852	209	83	2	1	208	1	207	2.11e-83	246
MS.gene07904.t1	MTR_8g020630	59.809	209	81	3	1	208	3	209	1.55e-82	244
MS.gene07904.t1	MTR_8g020650	61.458	192	72	2	17	208	20	209	3.94e-81	241
MS.gene07904.t1	MTR_8g020670	57.767	206	84	3	4	208	6	209	1.20e-78	234
MS.gene07904.t1	MTR_2g044040	51.196	209	99	3	1	208	3	209	3.55e-70	213
MS.gene07904.t1	MTR_2g045100	51.196	209	99	3	1	208	3	209	8.87e-68	207

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07904.t1	AT1G72610	67.788	208	67	0	1	208	1	208	5.97e-93	270
MS.gene07904.t1	AT5G20630	63.768	207	75	0	1	207	4	210	9.46e-88	258
MS.gene07904.t1	AT1G18980	44.041	193	104	2	12	202	26	216	2.11e-45	150
MS.gene07904.t1	AT1G02335	40.000	190	112	1	18	205	27	216	1.11e-43	145
MS.gene07904.t1	AT1G09560	43.011	186	104	1	19	202	28	213	2.53e-42	142
MS.gene07904.t1	AT3G62020	38.614	202	118	3	7	202	12	213	1.05e-41	140
MS.gene07904.t1	AT3G04200	43.005	193	104	3	19	205	31	223	8.32e-41	139
MS.gene07904.t1	AT1G18970	39.901	203	116	3	4	202	16	216	1.46e-40	137
MS.gene07904.t1	AT5G39190	40.952	210	112	5	7	205	12	220	9.56e-40	135
MS.gene07904.t1	AT5G39160	40.952	210	108	5	7	205	12	216	1.04e-39	135

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Find 46 sgRNAs with CRISPR-Local

Find 49 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGCTCAGACACTCCTTC+AGG	0.536936	8.3:-70543251	MS.gene07904:CDS
AAAGTGGTCTTAGTGATCAA+AGG	0.569186	8.3:+70542783	None:intergenic
AAATCAAGAATCTGAAGTCC+AGG	0.530903	8.3:+70542834	None:intergenic
AAATGGATAGGAAAAGTGAA+AGG	0.668197	8.3:+70543312	None:intergenic
AACAAATGCAGGTGTAACGG+CGG	0.707043	8.3:+70543136	None:intergenic
AAGAACAGGATCAAGGAAAG+TGG	0.596670	8.3:+70542767	None:intergenic
AAGAAGCTTAAGAGTATTCT+TGG	0.333318	8.3:-70542741	MS.gene07904:CDS
AAGAGTATTCTTGGTGGCAG+TGG	0.468240	8.3:-70542732	MS.gene07904:CDS
AAGCTTAAGAGTATTCTTGG+TGG	0.606685	8.3:-70542738	MS.gene07904:CDS
ACAAGAAGTTCACTAGCACC+AGG	0.581623	8.3:+70543026	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGGATAGGAAAAGTGAA+AGG	+	chr8.3:70542751-70542770	None:intergenic	30.0%
ATTGAAGAAAGGTGAGCTTA+TGG	-	chr8.3:70543120-70543139	MS.gene07904:CDS	35.0%
GTGAAAGGAGGAAAATGATT+TGG	+	chr8.3:70542736-70542755	None:intergenic	35.0%
TCAGATGACTTTGCATTTGA+AGG	-	chr8.3:70542863-70542882	MS.gene07904:CDS	35.0%
TGAAAATGCAACAAACCTTG+TGG	+	chr8.3:70543151-70543170	None:intergenic	35.0%
TTAAGCTTCTTGACAAGAAC+AGG	+	chr8.3:70543310-70543329	None:intergenic	35.0%
TTCAAATGCAAAGTCATCTG+AGG	+	chr8.3:70542864-70542883	None:intergenic	35.0%
TTCTGTGTAGCAGATATCAA+AGG	-	chr8.3:70542791-70542810	MS.gene07904:CDS	35.0%
AAGAACAGGATCAAGGAAAG+TGG	+	chr8.3:70543296-70543315	None:intergenic	40.0%
AGCAACAAATGCAGGTGTAA+CGG	+	chr8.3:70542930-70542949	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	70542728	70543354	70542728	ID=MS.gene07904
chr8.3	mRNA	70542728	70543354	70542728	ID=MS.gene07904.t1;Parent=MS.gene07904
chr8.3	exon	70542728	70543354	70542728	ID=MS.gene07904.t1.exon1;Parent=MS.gene07904.t1
chr8.3	CDS	70542728	70543354	70542728	ID=cds.MS.gene07904.t1;Parent=MS.gene07904.t1

Gene Sequence

>MS.gene07904

ATGATCCAAATCATTTTCCTCCTTTCACTTTTCCTATCCATTTCCAATGCTTCTGTTCAAGATTTCTGTGTAGCAGATATCAAAGGCTCAGACACTCCTTCAGGCTACCCTTGCAAGCCAGCTGCAACAGTAACCTCAGATGACTTTGCATTTGAAGGCTTAATTGCACCTGGAAACATAACAAACATTATTAACGCCGCCGTTACACCTGCATTTGTTGCTCAATTTCCAGGTGTTAATGGTCTTGGTCTCTCTGCAGCAAGGTTAGACCTTGGTCCTGCTGGTGTTATCCCACTTCACACTCACCCTGGTGCTAGTGAACTTCTTGTTGTGACACAAGGTCACATCACTGCTGGATTTGTTTCATCAGCTAACACTGTTTATATCAAGACATTGAAGAAAGGTGAGCTTATGGTTTTTCCACAAGGTTTGTTGCATTTTCAAGCTACTGCTGGTAAGAGAAATGCTGTTGCTTTTGCTGTTTTTAGTAGTGCTAGTCCTGGACTTCAGATTCTTGATTTTGCACTTTTTGCTAGTAACTTCTCTACTCCTTTGATCACTAAGACCACTTTCCTTGATCCTGTTCTTGTCAAGAAGCTTAAGAGTATTCTTGGTGGCAGTGGTTAA

Protein sequence

>MS.gene07904.t1

MIQIIFLLSLFLSISNASVQDFCVADIKGSDTPSGYPCKPAATVTSDDFAFEGLIAPGNITNIINAAVTPAFVAQFPGVNGLGLSAARLDLGPAGVIPLHTHPGASELLVVTQGHITAGFVSSANTVYIKTLKKGELMVFPQGLLHFQATAGKRNAVAFAVFSSASPGLQILDFALFASNFSTPLITKTTFLDPVLVKKLKSILGGSG