Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07904.t1 | XP_003627273.1 | 99 | 208 | 2 | 0 | 1 | 208 | 1 | 208 | 8.40E-107 | 396.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07904.t1 | P94040 | 67.8 | 208 | 67 | 0 | 1 | 208 | 1 | 208 | 6.2e-74 | 278.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07904.t1 | G7L6U5 | 99.0 | 208 | 2 | 0 | 1 | 208 | 1 | 208 | 6.1e-107 | 396.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene07904 | 0.834778 | 2.46E-56 | -1.69E-46 |
| MS.gene049171 | MS.gene07904 | 0.829593 | 4.72E-55 | -1.69E-46 |
| MS.gene049173 | MS.gene07904 | 0.807783 | 4.27E-50 | -1.69E-46 |
| MS.gene049217 | MS.gene07904 | 0.860457 | 2.04E-63 | -1.69E-46 |
| MS.gene049222 | MS.gene07904 | 0.852122 | 5.68E-61 | -1.69E-46 |
| MS.gene049285 | MS.gene07904 | 0.874728 | 5.38E-68 | -1.69E-46 |
| MS.gene049320 | MS.gene07904 | 0.876541 | 1.29E-68 | -1.69E-46 |
| MS.gene049427 | MS.gene07904 | 0.841037 | 6.06E-58 | -1.69E-46 |
| MS.gene049609 | MS.gene07904 | 0.828855 | 7.13E-55 | -1.69E-46 |
| MS.gene049614 | MS.gene07904 | 0.80006 | 1.72E-48 | -1.69E-46 |
| MS.gene049805 | MS.gene07904 | 0.876873 | 9.87E-69 | -1.69E-46 |
| MS.gene050076 | MS.gene07904 | 0.814068 | 1.86E-51 | -1.69E-46 |
| MS.gene050163 | MS.gene07904 | 0.882301 | 1.17E-70 | -1.69E-46 |
| MS.gene050165 | MS.gene07904 | 0.863953 | 1.72E-64 | -1.69E-46 |
| MS.gene050333 | MS.gene07904 | 0.84329 | 1.53E-58 | -1.69E-46 |
| MS.gene050432 | MS.gene07904 | 0.811054 | 8.48E-51 | -1.69E-46 |
| MS.gene050504 | MS.gene07904 | 0.838886 | 2.20E-57 | -1.69E-46 |
| MS.gene050518 | MS.gene07904 | 0.841211 | 5.45E-58 | -1.69E-46 |
| MS.gene050577 | MS.gene07904 | 0.830502 | 2.83E-55 | -1.69E-46 |
| MS.gene050593 | MS.gene07904 | 0.823651 | 1.23E-53 | -1.69E-46 |
| MS.gene050612 | MS.gene07904 | 0.831726 | 1.42E-55 | -1.69E-46 |
| MS.gene050675 | MS.gene07904 | 0.820312 | 7.33E-53 | -1.69E-46 |
| MS.gene050699 | MS.gene07904 | 0.85941 | 4.22E-63 | -1.69E-46 |
| MS.gene050747 | MS.gene07904 | 0.814264 | 1.68E-51 | -1.69E-46 |
| MS.gene050767 | MS.gene07904 | 0.856137 | 3.94E-62 | -1.69E-46 |
| MS.gene050770 | MS.gene07904 | 0.857315 | 1.77E-62 | -1.69E-46 |
| MS.gene050772 | MS.gene07904 | 0.8624 | 5.20E-64 | -1.69E-46 |
| MS.gene050950 | MS.gene07904 | 0.807957 | 3.92E-50 | -1.69E-46 |
| MS.gene050986 | MS.gene07904 | 0.811432 | 7.02E-51 | -1.69E-46 |
| MS.gene05100 | MS.gene07904 | 0.882333 | 1.14E-70 | -1.69E-46 |
| MS.gene051228 | MS.gene07904 | 0.824423 | 8.14E-54 | -1.69E-46 |
| MS.gene051551 | MS.gene07904 | 0.8297 | 4.44E-55 | -1.69E-46 |
| MS.gene051666 | MS.gene07904 | 0.857525 | 1.54E-62 | -1.69E-46 |
| MS.gene051692 | MS.gene07904 | 0.81758 | 3.06E-52 | -1.69E-46 |
| MS.gene051694 | MS.gene07904 | 0.818245 | 2.17E-52 | -1.69E-46 |
| MS.gene051810 | MS.gene07904 | 0.859582 | 3.74E-63 | -1.69E-46 |
| MS.gene051858 | MS.gene07904 | 0.825083 | 5.69E-54 | -1.69E-46 |
| MS.gene051949 | MS.gene07904 | 0.815216 | 1.04E-51 | -1.69E-46 |
| MS.gene052271 | MS.gene07904 | 0.892802 | 1.13E-74 | -1.69E-46 |
| MS.gene052290 | MS.gene07904 | 0.832636 | 8.44E-56 | -1.69E-46 |
| MS.gene052379 | MS.gene07904 | 0.856746 | 2.61E-62 | -1.69E-46 |
| MS.gene052421 | MS.gene07904 | 0.828563 | 8.39E-55 | -1.69E-46 |
| MS.gene052503 | MS.gene07904 | 0.802192 | 6.30E-49 | -1.69E-46 |
| MS.gene052615 | MS.gene07904 | 0.846078 | 2.72E-59 | -1.69E-46 |
| MS.gene052916 | MS.gene07904 | 0.808942 | 2.42E-50 | -1.69E-46 |
| MS.gene053009 | MS.gene07904 | 0.819825 | 9.47E-53 | -1.69E-46 |
| MS.gene053103 | MS.gene07904 | 0.811857 | 5.68E-51 | -1.69E-46 |
| MS.gene053104 | MS.gene07904 | 0.827205 | 1.78E-54 | -1.69E-46 |
| MS.gene053213 | MS.gene07904 | 0.889865 | 1.65E-73 | -1.69E-46 |
| MS.gene053286 | MS.gene07904 | 0.880476 | 5.32E-70 | -1.69E-46 |
| MS.gene053322 | MS.gene07904 | 0.892546 | 1.44E-74 | -1.69E-46 |
| MS.gene053574 | MS.gene07904 | 0.831942 | 1.25E-55 | -1.69E-46 |
| MS.gene053579 | MS.gene07904 | 0.807803 | 4.23E-50 | -1.69E-46 |
| MS.gene053632 | MS.gene07904 | 0.876183 | 1.71E-68 | -1.69E-46 |
| MS.gene053813 | MS.gene07904 | 0.801079 | 1.07E-48 | -1.69E-46 |
| MS.gene053916 | MS.gene07904 | 0.823629 | 1.25E-53 | -1.69E-46 |
| MS.gene054376 | MS.gene07904 | 0.845791 | 3.26E-59 | -1.69E-46 |
| MS.gene054408 | MS.gene07904 | 0.80887 | 2.50E-50 | -1.69E-46 |
| MS.gene054543 | MS.gene07904 | 0.826655 | 2.41E-54 | -1.69E-46 |
| MS.gene054600 | MS.gene07904 | 0.814368 | 1.60E-51 | -1.69E-46 |
| MS.gene054642 | MS.gene07904 | 0.896896 | 2.38E-76 | -1.69E-46 |
| MS.gene054802 | MS.gene07904 | 0.852436 | 4.62E-61 | -1.69E-46 |
| MS.gene054803 | MS.gene07904 | 0.84743 | 1.16E-59 | -1.69E-46 |
| MS.gene054804 | MS.gene07904 | 0.8536 | 2.15E-61 | -1.69E-46 |
| MS.gene054954 | MS.gene07904 | 0.845128 | 4.92E-59 | -1.69E-46 |
| MS.gene05505 | MS.gene07904 | 0.847153 | 1.38E-59 | -1.69E-46 |
| MS.gene055206 | MS.gene07904 | 0.812468 | 4.18E-51 | -1.69E-46 |
| MS.gene055212 | MS.gene07904 | 0.817147 | 3.83E-52 | -1.69E-46 |
| MS.gene055254 | MS.gene07904 | 0.815652 | 8.29E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene07904 | 0.862131 | 6.30E-64 | -1.69E-46 |
| MS.gene055397 | MS.gene07904 | 0.885601 | 7.06E-72 | -1.69E-46 |
| MS.gene055499 | MS.gene07904 | 0.883627 | 3.82E-71 | -1.69E-46 |
| MS.gene055502 | MS.gene07904 | 0.866709 | 2.34E-65 | -1.69E-46 |
| MS.gene055533 | MS.gene07904 | 0.832993 | 6.88E-56 | -1.69E-46 |
| MS.gene055638 | MS.gene07904 | 0.808103 | 3.65E-50 | -1.69E-46 |
| MS.gene055647 | MS.gene07904 | 0.850453 | 1.68E-60 | -1.69E-46 |
| MS.gene055722 | MS.gene07904 | 0.826766 | 2.27E-54 | -1.69E-46 |
| MS.gene055896 | MS.gene07904 | 0.802953 | 4.39E-49 | -1.69E-46 |
| MS.gene05592 | MS.gene07904 | 0.86008 | 2.65E-63 | -1.69E-46 |
| MS.gene055941 | MS.gene07904 | 0.823144 | 1.62E-53 | -1.69E-46 |
| MS.gene055956 | MS.gene07904 | -0.825654 | 4.17E-54 | -1.69E-46 |
| MS.gene056083 | MS.gene07904 | 0.827782 | 1.29E-54 | -1.69E-46 |
| MS.gene056374 | MS.gene07904 | 0.878554 | 2.56E-69 | -1.69E-46 |
| MS.gene056510 | MS.gene07904 | 0.803345 | 3.64E-49 | -1.69E-46 |
| MS.gene056549 | MS.gene07904 | 0.809517 | 1.82E-50 | -1.69E-46 |
| MS.gene056657 | MS.gene07904 | 0.888433 | 5.93E-73 | -1.69E-46 |
| MS.gene057011 | MS.gene07904 | 0.81721 | 3.71E-52 | -1.69E-46 |
| MS.gene057076 | MS.gene07904 | 0.814906 | 1.21E-51 | -1.69E-46 |
| MS.gene057123 | MS.gene07904 | 0.828749 | 7.56E-55 | -1.69E-46 |
| MS.gene057129 | MS.gene07904 | 0.90291 | 5.98E-79 | -1.69E-46 |
| MS.gene057146 | MS.gene07904 | 0.867573 | 1.24E-65 | -1.69E-46 |
| MS.gene057246 | MS.gene07904 | 0.813047 | 3.12E-51 | -1.69E-46 |
| MS.gene057295 | MS.gene07904 | 0.815661 | 8.25E-52 | -1.69E-46 |
| MS.gene057331 | MS.gene07904 | 0.806833 | 6.79E-50 | -1.69E-46 |
| MS.gene057416 | MS.gene07904 | 0.884534 | 1.77E-71 | -1.69E-46 |
| MS.gene057926 | MS.gene07904 | 0.818408 | 1.99E-52 | -1.69E-46 |
| MS.gene058006 | MS.gene07904 | 0.805469 | 1.32E-49 | -1.69E-46 |
| MS.gene058019 | MS.gene07904 | 0.876205 | 1.68E-68 | -1.69E-46 |
| MS.gene058293 | MS.gene07904 | 0.815034 | 1.14E-51 | -1.69E-46 |
| MS.gene058419 | MS.gene07904 | 0.899617 | 1.66E-77 | -1.69E-46 |
| MS.gene058544 | MS.gene07904 | 0.836949 | 6.93E-57 | -1.69E-46 |
| MS.gene058660 | MS.gene07904 | 0.831689 | 1.45E-55 | -1.69E-46 |
| MS.gene058723 | MS.gene07904 | 0.84529 | 4.45E-59 | -1.69E-46 |
| MS.gene05883 | MS.gene07904 | 0.809472 | 1.86E-50 | -1.69E-46 |
| MS.gene059022 | MS.gene07904 | 0.833292 | 5.80E-56 | -1.69E-46 |
| MS.gene059029 | MS.gene07904 | 0.833357 | 5.59E-56 | -1.69E-46 |
| MS.gene05913 | MS.gene07904 | 0.805094 | 1.58E-49 | -1.69E-46 |
| MS.gene05934 | MS.gene07904 | 0.83432 | 3.21E-56 | -1.69E-46 |
| MS.gene059536 | MS.gene07904 | 0.866313 | 3.12E-65 | -1.69E-46 |
| MS.gene059677 | MS.gene07904 | 0.876618 | 1.21E-68 | -1.69E-46 |
| MS.gene059688 | MS.gene07904 | 0.806744 | 7.09E-50 | -1.69E-46 |
| MS.gene059692 | MS.gene07904 | 0.803595 | 3.23E-49 | -1.69E-46 |
| MS.gene059695 | MS.gene07904 | 0.810351 | 1.20E-50 | -1.69E-46 |
| MS.gene059718 | MS.gene07904 | 0.845485 | 3.94E-59 | -1.69E-46 |
| MS.gene059756 | MS.gene07904 | 0.82649 | 2.64E-54 | -1.69E-46 |
| MS.gene059865 | MS.gene07904 | 0.807406 | 5.13E-50 | -1.69E-46 |
| MS.gene059902 | MS.gene07904 | 0.823944 | 1.05E-53 | -1.69E-46 |
| MS.gene059960 | MS.gene07904 | 0.885182 | 1.01E-71 | -1.69E-46 |
| MS.gene060193 | MS.gene07904 | 0.813045 | 3.12E-51 | -1.69E-46 |
| MS.gene060703 | MS.gene07904 | 0.801634 | 8.21E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene07904 | 0.817486 | 3.22E-52 | -1.69E-46 |
| MS.gene06077 | MS.gene07904 | 0.810643 | 1.04E-50 | -1.69E-46 |
| MS.gene060804 | MS.gene07904 | 0.856062 | 4.15E-62 | -1.69E-46 |
| MS.gene060818 | MS.gene07904 | 0.833042 | 6.69E-56 | -1.69E-46 |
| MS.gene06092 | MS.gene07904 | 0.811865 | 5.65E-51 | -1.69E-46 |
| MS.gene061041 | MS.gene07904 | 0.848575 | 5.62E-60 | -1.69E-46 |
| MS.gene061134 | MS.gene07904 | 0.815424 | 9.31E-52 | -1.69E-46 |
| MS.gene061150 | MS.gene07904 | 0.844454 | 7.48E-59 | -1.69E-46 |
| MS.gene061200 | MS.gene07904 | 0.893732 | 4.78E-75 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07904.t1 | MTR_8g020590 | 99.038 | 208 | 2 | 0 | 1 | 208 | 1 | 208 | 1.96e-147 | 408 |
| MS.gene07904.t1 | MTR_2g041550 | 68.269 | 208 | 65 | 1 | 1 | 208 | 4 | 210 | 7.65e-95 | 275 |
| MS.gene07904.t1 | MTR_2g041570 | 64.904 | 208 | 73 | 0 | 1 | 208 | 3 | 210 | 2.67e-92 | 269 |
| MS.gene07904.t1 | MTR_2g041580 | 64.423 | 208 | 74 | 0 | 1 | 208 | 3 | 210 | 3.38e-91 | 266 |
| MS.gene07904.t1 | MTR_8g020610 | 58.852 | 209 | 83 | 2 | 1 | 208 | 1 | 207 | 2.11e-83 | 246 |
| MS.gene07904.t1 | MTR_8g020630 | 59.809 | 209 | 81 | 3 | 1 | 208 | 3 | 209 | 1.55e-82 | 244 |
| MS.gene07904.t1 | MTR_8g020650 | 61.458 | 192 | 72 | 2 | 17 | 208 | 20 | 209 | 3.94e-81 | 241 |
| MS.gene07904.t1 | MTR_8g020670 | 57.767 | 206 | 84 | 3 | 4 | 208 | 6 | 209 | 1.20e-78 | 234 |
| MS.gene07904.t1 | MTR_2g044040 | 51.196 | 209 | 99 | 3 | 1 | 208 | 3 | 209 | 3.55e-70 | 213 |
| MS.gene07904.t1 | MTR_2g045100 | 51.196 | 209 | 99 | 3 | 1 | 208 | 3 | 209 | 8.87e-68 | 207 |
| MS.gene07904.t1 | MTR_3g019710 | 51.196 | 209 | 99 | 3 | 1 | 208 | 3 | 209 | 2.01e-67 | 206 |
| MS.gene07904.t1 | MTR_2g036120 | 50.962 | 208 | 99 | 3 | 1 | 207 | 3 | 208 | 9.16e-67 | 204 |
| MS.gene07904.t1 | MTR_3g019650 | 50.000 | 208 | 102 | 2 | 1 | 208 | 3 | 208 | 1.03e-66 | 204 |
| MS.gene07904.t1 | MTR_3g019680 | 49.038 | 208 | 104 | 2 | 1 | 208 | 3 | 208 | 7.44e-65 | 199 |
| MS.gene07904.t1 | MTR_8g020770 | 50.711 | 211 | 100 | 4 | 1 | 208 | 3 | 212 | 1.21e-64 | 199 |
| MS.gene07904.t1 | MTR_5g031460 | 49.282 | 209 | 103 | 3 | 1 | 208 | 3 | 209 | 2.75e-64 | 198 |
| MS.gene07904.t1 | MTR_0284s0010 | 49.761 | 209 | 102 | 3 | 1 | 208 | 3 | 209 | 1.26e-63 | 196 |
| MS.gene07904.t1 | MTR_4g010340 | 50.481 | 208 | 100 | 3 | 1 | 208 | 1 | 205 | 1.31e-63 | 196 |
| MS.gene07904.t1 | MTR_7g011340 | 50.515 | 194 | 94 | 2 | 15 | 208 | 18 | 209 | 2.04e-62 | 193 |
| MS.gene07904.t1 | MTR_3g073170 | 47.895 | 190 | 93 | 4 | 20 | 208 | 26 | 210 | 3.33e-60 | 187 |
| MS.gene07904.t1 | MTR_2g019780 | 46.445 | 211 | 102 | 5 | 4 | 208 | 7 | 212 | 4.34e-59 | 185 |
| MS.gene07904.t1 | MTR_8g020760 | 47.573 | 206 | 104 | 3 | 5 | 208 | 8 | 211 | 7.25e-59 | 184 |
| MS.gene07904.t1 | MTR_8g020750 | 45.498 | 211 | 111 | 3 | 1 | 208 | 3 | 212 | 5.08e-58 | 182 |
| MS.gene07904.t1 | MTR_8g020763 | 46.629 | 178 | 94 | 1 | 31 | 208 | 14 | 190 | 2.88e-53 | 169 |
| MS.gene07904.t1 | MTR_3g019810 | 45.366 | 205 | 103 | 4 | 1 | 204 | 109 | 305 | 2.06e-51 | 168 |
| MS.gene07904.t1 | MTR_1g085140 | 40.957 | 188 | 109 | 1 | 19 | 204 | 28 | 215 | 1.55e-41 | 140 |
| MS.gene07904.t1 | MTR_7g111240 | 40.212 | 189 | 111 | 1 | 18 | 204 | 23 | 211 | 3.22e-39 | 134 |
| MS.gene07904.t1 | MTR_1g085500 | 37.838 | 185 | 111 | 1 | 4 | 184 | 8 | 192 | 1.45e-38 | 132 |
| MS.gene07904.t1 | MTR_4g027415 | 51.969 | 127 | 59 | 2 | 15 | 141 | 18 | 142 | 1.98e-38 | 130 |
| MS.gene07904.t1 | MTR_2g030855 | 39.674 | 184 | 103 | 3 | 18 | 199 | 25 | 202 | 3.97e-38 | 131 |
| MS.gene07904.t1 | MTR_7g111240 | 40.212 | 189 | 108 | 2 | 18 | 204 | 23 | 208 | 4.16e-38 | 131 |
| MS.gene07904.t1 | MTR_2g031270 | 39.153 | 189 | 108 | 3 | 18 | 202 | 26 | 211 | 4.35e-38 | 131 |
| MS.gene07904.t1 | MTR_1g079490 | 41.361 | 191 | 104 | 4 | 19 | 202 | 26 | 215 | 5.84e-38 | 131 |
| MS.gene07904.t1 | MTR_1g060120 | 40.678 | 177 | 97 | 3 | 19 | 188 | 30 | 205 | 1.09e-37 | 130 |
| MS.gene07904.t1 | MTR_1g023770 | 37.368 | 190 | 109 | 3 | 17 | 202 | 24 | 207 | 6.29e-37 | 128 |
| MS.gene07904.t1 | MTR_6g005340 | 41.579 | 190 | 103 | 4 | 19 | 202 | 26 | 213 | 7.58e-37 | 128 |
| MS.gene07904.t1 | MTR_1g112200 | 36.058 | 208 | 115 | 5 | 1 | 202 | 10 | 205 | 9.52e-37 | 127 |
| MS.gene07904.t1 | MTR_4g017050 | 40.796 | 201 | 110 | 5 | 9 | 202 | 16 | 214 | 1.69e-36 | 127 |
| MS.gene07904.t1 | MTR_6g005360 | 41.053 | 190 | 104 | 4 | 19 | 202 | 26 | 213 | 3.42e-36 | 126 |
| MS.gene07904.t1 | MTR_4g017040 | 38.889 | 216 | 115 | 6 | 2 | 202 | 1 | 214 | 4.03e-36 | 126 |
| MS.gene07904.t1 | MTR_2g019250 | 40.796 | 201 | 110 | 5 | 9 | 202 | 16 | 214 | 4.03e-36 | 126 |
| MS.gene07904.t1 | MTR_6g005310 | 41.053 | 190 | 104 | 4 | 19 | 202 | 26 | 213 | 5.37e-36 | 126 |
| MS.gene07904.t1 | MTR_6g005330 | 38.140 | 215 | 118 | 5 | 1 | 202 | 1 | 213 | 7.73e-36 | 125 |
| MS.gene07904.t1 | MTR_5g036570 | 37.696 | 191 | 116 | 2 | 19 | 206 | 31 | 221 | 8.03e-36 | 125 |
| MS.gene07904.t1 | MTR_5g046410 | 40.299 | 201 | 111 | 5 | 9 | 202 | 16 | 214 | 9.33e-36 | 125 |
| MS.gene07904.t1 | MTR_5g046430 | 40.299 | 201 | 111 | 5 | 9 | 202 | 16 | 214 | 9.33e-36 | 125 |
| MS.gene07904.t1 | MTR_4g017030 | 40.299 | 201 | 111 | 5 | 9 | 202 | 16 | 214 | 9.33e-36 | 125 |
| MS.gene07904.t1 | MTR_2g072560 | 52.632 | 114 | 52 | 2 | 1 | 113 | 3 | 115 | 3.70e-35 | 121 |
| MS.gene07904.t1 | MTR_2g030895 | 38.235 | 170 | 100 | 3 | 38 | 202 | 7 | 176 | 8.67e-33 | 116 |
| MS.gene07904.t1 | MTR_6g005380 | 40.984 | 183 | 97 | 6 | 19 | 193 | 26 | 205 | 1.16e-32 | 117 |
| MS.gene07904.t1 | MTR_2g030865 | 39.873 | 158 | 89 | 3 | 38 | 192 | 7 | 161 | 9.98e-32 | 114 |
| MS.gene07904.t1 | MTR_3g019610 | 50.476 | 105 | 50 | 2 | 1 | 104 | 3 | 106 | 3.82e-31 | 110 |
| MS.gene07904.t1 | MTR_6g005350 | 38.095 | 189 | 110 | 4 | 19 | 202 | 26 | 212 | 7.24e-31 | 112 |
| MS.gene07904.t1 | MTR_8g007300 | 35.948 | 153 | 95 | 2 | 18 | 168 | 29 | 180 | 6.23e-29 | 107 |
| MS.gene07904.t1 | MTR_2g031300 | 46.226 | 106 | 55 | 1 | 38 | 141 | 7 | 112 | 2.62e-26 | 99.4 |
| MS.gene07904.t1 | MTR_3g096330 | 34.286 | 140 | 91 | 1 | 34 | 173 | 598 | 736 | 4.48e-23 | 96.7 |
| MS.gene07904.t1 | MTR_4g052770 | 35.606 | 132 | 84 | 1 | 71 | 201 | 71 | 202 | 2.33e-20 | 85.1 |
| MS.gene07904.t1 | MTR_2g086630 | 35.938 | 128 | 81 | 1 | 75 | 201 | 74 | 201 | 4.70e-20 | 84.3 |
| MS.gene07904.t1 | MTR_4g052780 | 34.848 | 132 | 85 | 1 | 71 | 201 | 71 | 202 | 9.68e-20 | 83.6 |
| MS.gene07904.t1 | MTR_2g086620 | 35.156 | 128 | 82 | 1 | 75 | 201 | 74 | 201 | 2.41e-19 | 82.4 |
| MS.gene07904.t1 | MTR_2g086640 | 35.659 | 129 | 82 | 1 | 74 | 201 | 72 | 200 | 2.97e-19 | 82.4 |
| MS.gene07904.t1 | MTR_2g096110 | 30.081 | 123 | 70 | 2 | 47 | 168 | 12 | 119 | 5.40e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07904.t1 | AT1G72610 | 67.788 | 208 | 67 | 0 | 1 | 208 | 1 | 208 | 5.97e-93 | 270 |
| MS.gene07904.t1 | AT5G20630 | 63.768 | 207 | 75 | 0 | 1 | 207 | 4 | 210 | 9.46e-88 | 258 |
| MS.gene07904.t1 | AT1G18980 | 44.041 | 193 | 104 | 2 | 12 | 202 | 26 | 216 | 2.11e-45 | 150 |
| MS.gene07904.t1 | AT1G02335 | 40.000 | 190 | 112 | 1 | 18 | 205 | 27 | 216 | 1.11e-43 | 145 |
| MS.gene07904.t1 | AT1G09560 | 43.011 | 186 | 104 | 1 | 19 | 202 | 28 | 213 | 2.53e-42 | 142 |
| MS.gene07904.t1 | AT3G62020 | 38.614 | 202 | 118 | 3 | 7 | 202 | 12 | 213 | 1.05e-41 | 140 |
| MS.gene07904.t1 | AT3G04200 | 43.005 | 193 | 104 | 3 | 19 | 205 | 31 | 223 | 8.32e-41 | 139 |
| MS.gene07904.t1 | AT1G18970 | 39.901 | 203 | 116 | 3 | 4 | 202 | 16 | 216 | 1.46e-40 | 137 |
| MS.gene07904.t1 | AT5G39190 | 40.952 | 210 | 112 | 5 | 7 | 205 | 12 | 220 | 9.56e-40 | 135 |
| MS.gene07904.t1 | AT5G39160 | 40.952 | 210 | 108 | 5 | 7 | 205 | 12 | 216 | 1.04e-39 | 135 |
| MS.gene07904.t1 | AT5G39160 | 40.952 | 210 | 112 | 5 | 7 | 205 | 12 | 220 | 1.10e-39 | 135 |
| MS.gene07904.t1 | AT5G39130 | 40.476 | 210 | 113 | 5 | 7 | 205 | 12 | 220 | 4.01e-39 | 134 |
| MS.gene07904.t1 | AT5G26700 | 37.186 | 199 | 123 | 2 | 4 | 201 | 9 | 206 | 4.53e-39 | 134 |
| MS.gene07904.t1 | AT3G05930 | 42.515 | 167 | 95 | 1 | 19 | 184 | 27 | 193 | 7.89e-38 | 130 |
| MS.gene07904.t1 | AT3G62020 | 38.953 | 172 | 102 | 2 | 34 | 202 | 13 | 184 | 9.36e-38 | 129 |
| MS.gene07904.t1 | AT5G38960 | 41.000 | 200 | 103 | 5 | 17 | 205 | 28 | 223 | 1.95e-37 | 130 |
| MS.gene07904.t1 | AT3G04150 | 37.209 | 215 | 126 | 5 | 2 | 208 | 12 | 225 | 2.05e-37 | 130 |
| MS.gene07904.t1 | AT3G04150 | 35.683 | 227 | 126 | 4 | 2 | 208 | 12 | 238 | 3.76e-36 | 127 |
| MS.gene07904.t1 | AT3G10080 | 37.714 | 175 | 103 | 2 | 19 | 188 | 30 | 203 | 8.92e-36 | 125 |
| MS.gene07904.t1 | AT3G05950 | 41.379 | 203 | 112 | 5 | 7 | 202 | 17 | 219 | 1.68e-35 | 125 |
| MS.gene07904.t1 | AT5G61750 | 39.181 | 171 | 98 | 3 | 4 | 169 | 6 | 175 | 1.93e-35 | 124 |
| MS.gene07904.t1 | AT3G10080 | 37.714 | 175 | 103 | 2 | 19 | 188 | 101 | 274 | 2.36e-35 | 126 |
| MS.gene07904.t1 | AT5G38940 | 39.583 | 192 | 110 | 3 | 17 | 202 | 28 | 219 | 3.43e-35 | 124 |
| MS.gene07904.t1 | AT5G38940 | 39.583 | 192 | 110 | 3 | 17 | 202 | 52 | 243 | 5.17e-35 | 124 |
| MS.gene07904.t1 | AT5G39110 | 37.619 | 210 | 120 | 4 | 4 | 202 | 9 | 218 | 7.08e-35 | 123 |
| MS.gene07904.t1 | AT4G14630 | 41.398 | 186 | 94 | 4 | 5 | 179 | 14 | 195 | 1.86e-34 | 122 |
| MS.gene07904.t1 | AT5G38910 | 39.815 | 216 | 112 | 6 | 1 | 202 | 6 | 217 | 1.90e-34 | 122 |
| MS.gene07904.t1 | AT5G38930 | 39.062 | 192 | 111 | 3 | 17 | 202 | 28 | 219 | 8.39e-34 | 120 |
| MS.gene07904.t1 | AT3G04170 | 38.571 | 210 | 119 | 5 | 2 | 204 | 12 | 218 | 2.95e-33 | 119 |
| MS.gene07904.t1 | AT3G04190 | 40.698 | 172 | 95 | 3 | 19 | 186 | 30 | 198 | 4.65e-33 | 118 |
| MS.gene07904.t1 | AT5G39150 | 37.559 | 213 | 122 | 4 | 1 | 202 | 5 | 217 | 6.88e-33 | 118 |
| MS.gene07904.t1 | AT5G39180 | 38.967 | 213 | 119 | 5 | 1 | 202 | 5 | 217 | 7.42e-33 | 118 |
| MS.gene07904.t1 | AT1G74820 | 39.865 | 148 | 87 | 1 | 20 | 167 | 41 | 186 | 8.99e-33 | 118 |
| MS.gene07904.t1 | AT5G39190 | 37.619 | 210 | 97 | 5 | 7 | 205 | 12 | 198 | 9.98e-33 | 117 |
| MS.gene07904.t1 | AT5G39160 | 37.619 | 210 | 97 | 5 | 7 | 205 | 12 | 198 | 1.28e-32 | 117 |
| MS.gene07904.t1 | AT5G39120 | 36.364 | 209 | 126 | 3 | 1 | 202 | 9 | 217 | 2.86e-32 | 116 |
| MS.gene07904.t1 | AT3G04180 | 37.500 | 192 | 114 | 3 | 19 | 204 | 30 | 221 | 1.34e-31 | 115 |
| MS.gene07904.t1 | AT1G10460 | 36.649 | 191 | 100 | 5 | 19 | 202 | 23 | 199 | 2.27e-27 | 103 |
| MS.gene07904.t1 | AT5G38910 | 32.864 | 213 | 92 | 6 | 2 | 202 | 7 | 180 | 3.88e-18 | 79.0 |
Find 46 sgRNAs with CRISPR-Local
Find 49 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCAATTTCCAGGTGTTAA+TGG | 0.254583 | 8.3:-70543113 | MS.gene07904:CDS |
| GCATTTGTTGCTCAATTTCC+AGG | 0.268611 | 8.3:-70543122 | MS.gene07904:CDS |
| ATAATGTTTGTTATGTTTCC+AGG | 0.316628 | 8.3:+70543164 | None:intergenic |
| TCAGATGACTTTGCATTTGA+AGG | 0.332801 | 8.3:-70543197 | MS.gene07904:CDS |
| TTTCCAGGTGTTAATGGTCT+TGG | 0.332823 | 8.3:-70543107 | MS.gene07904:CDS |
| AAGAAGCTTAAGAGTATTCT+TGG | 0.333318 | 8.3:-70542741 | MS.gene07904:CDS |
| ATTGAAGAAAGGTGAGCTTA+TGG | 0.345552 | 8.3:-70542940 | MS.gene07904:CDS |
| GTGAAAGGAGGAAAATGATT+TGG | 0.346356 | 8.3:+70543327 | None:intergenic |
| TTAAGCTTCTTGACAAGAAC+AGG | 0.390814 | 8.3:+70542753 | None:intergenic |
| TTGAACAGAAGCATTGGAAA+TGG | 0.427106 | 8.3:+70543295 | None:intergenic |
| ACTGTTGCAGCTGGCTTGCA+AGG | 0.435794 | 8.3:+70543224 | None:intergenic |
| AGGTTAGACCTTGGTCCTGC+TGG | 0.451460 | 8.3:-70543071 | MS.gene07904:CDS |
| AAGAGTATTCTTGGTGGCAG+TGG | 0.468240 | 8.3:-70542732 | MS.gene07904:CDS |
| GAAATCTTGAACAGAAGCAT+TGG | 0.490916 | 8.3:+70543289 | None:intergenic |
| TCTGAGGTTACTGTTGCAGC+TGG | 0.494812 | 8.3:+70543215 | None:intergenic |
| TATATCAAGACATTGAAGAA+AGG | 0.516212 | 8.3:-70542951 | MS.gene07904:CDS |
| ACACAAGGTCACATCACTGC+TGG | 0.521846 | 8.3:-70542999 | MS.gene07904:CDS |
| GGAAATTGAGCAACAAATGC+AGG | 0.523939 | 8.3:+70543125 | None:intergenic |
| TTTGAAGGCTTAATTGCACC+TGG | 0.524625 | 8.3:-70543182 | MS.gene07904:CDS |
| AAATCAAGAATCTGAAGTCC+AGG | 0.530903 | 8.3:+70542834 | None:intergenic |
| CAGAAGCATTGGAAATGGAT+AGG | 0.534090 | 8.3:+70543300 | None:intergenic |
| TCTTGACAAGAACAGGATCA+AGG | 0.536649 | 8.3:+70542760 | None:intergenic |
| AAAGGCTCAGACACTCCTTC+AGG | 0.536936 | 8.3:-70543251 | MS.gene07904:CDS |
| CTGTTGCAGCTGGCTTGCAA+GGG | 0.536983 | 8.3:+70543225 | None:intergenic |
| AGCAACAAATGCAGGTGTAA+CGG | 0.564694 | 8.3:+70543133 | None:intergenic |
| AAAGTGGTCTTAGTGATCAA+AGG | 0.569186 | 8.3:+70542783 | None:intergenic |
| CACCAGGGTGAGTGTGAAGT+GGG | 0.573025 | 8.3:+70543042 | None:intergenic |
| GCACCAGGGTGAGTGTGAAG+TGG | 0.581572 | 8.3:+70543041 | None:intergenic |
| ACAAGAAGTTCACTAGCACC+AGG | 0.581623 | 8.3:+70543026 | None:intergenic |
| ATCCCACTTCACACTCACCC+TGG | 0.585390 | 8.3:-70543044 | MS.gene07904:CDS |
| AAGAACAGGATCAAGGAAAG+TGG | 0.596670 | 8.3:+70542767 | None:intergenic |
| TCTGCAGCAAGGTTAGACCT+TGG | 0.601086 | 8.3:-70543080 | MS.gene07904:CDS |
| AAGCTTAAGAGTATTCTTGG+TGG | 0.606685 | 8.3:-70542738 | MS.gene07904:CDS |
| TGAAGTGGGATAACACCAGC+AGG | 0.607179 | 8.3:+70543056 | None:intergenic |
| GGCTTGCAAGGGTAGCCTGA+AGG | 0.613463 | 8.3:+70543236 | None:intergenic |
| TGGATAGGAAAAGTGAAAGG+AGG | 0.620226 | 8.3:+70543315 | None:intergenic |
| GTCTTGGTCTCTCTGCAGCA+AGG | 0.623079 | 8.3:-70543091 | MS.gene07904:CDS |
| TTCTGTGTAGCAGATATCAA+AGG | 0.629502 | 8.3:-70543269 | MS.gene07904:CDS |
| TGAAAATGCAACAAACCTTG+TGG | 0.630902 | 8.3:+70542912 | None:intergenic |
| GAACTTCTTGTTGTGACACA+AGG | 0.632584 | 8.3:-70543014 | MS.gene07904:CDS |
| AGACCAAGACCATTAACACC+TGG | 0.647049 | 8.3:+70543104 | None:intergenic |
| GGATAACACCAGCAGGACCA+AGG | 0.650304 | 8.3:+70543063 | None:intergenic |
| TTCAAATGCAAAGTCATCTG+AGG | 0.653626 | 8.3:+70543199 | None:intergenic |
| CAAGAAGTTCACTAGCACCA+GGG | 0.656716 | 8.3:+70543027 | None:intergenic |
| AAATGGATAGGAAAAGTGAA+AGG | 0.668197 | 8.3:+70543312 | None:intergenic |
| AACAAATGCAGGTGTAACGG+CGG | 0.707043 | 8.3:+70543136 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TATATCAAGACATTGAAGAA+AGG | - | chr8.3:70543109-70543128 | MS.gene07904:CDS | 25.0% |
| !!! | ATAATGTTTGTTATGTTTCC+AGG | + | chr8.3:70542899-70542918 | None:intergenic | 25.0% |
| AAATGGATAGGAAAAGTGAA+AGG | + | chr8.3:70542751-70542770 | None:intergenic | 30.0% | |
| !! | AAGAAGCTTAAGAGTATTCT+TGG | - | chr8.3:70543319-70543338 | MS.gene07904:CDS | 30.0% |
| ATTGAAGAAAGGTGAGCTTA+TGG | - | chr8.3:70543120-70543139 | MS.gene07904:CDS | 35.0% | |
| GTGAAAGGAGGAAAATGATT+TGG | + | chr8.3:70542736-70542755 | None:intergenic | 35.0% | |
| TCAGATGACTTTGCATTTGA+AGG | - | chr8.3:70542863-70542882 | MS.gene07904:CDS | 35.0% | |
| TGAAAATGCAACAAACCTTG+TGG | + | chr8.3:70543151-70543170 | None:intergenic | 35.0% | |
| TTAAGCTTCTTGACAAGAAC+AGG | + | chr8.3:70543310-70543329 | None:intergenic | 35.0% | |
| TTCAAATGCAAAGTCATCTG+AGG | + | chr8.3:70542864-70542883 | None:intergenic | 35.0% | |
| TTCTGTGTAGCAGATATCAA+AGG | - | chr8.3:70542791-70542810 | MS.gene07904:CDS | 35.0% | |
| ! | AAAGTGGTCTTAGTGATCAA+AGG | + | chr8.3:70543280-70543299 | None:intergenic | 35.0% |
| ! | AAATCAAGAATCTGAAGTCC+AGG | + | chr8.3:70543229-70543248 | None:intergenic | 35.0% |
| ! | GAAATCTTGAACAGAAGCAT+TGG | + | chr8.3:70542774-70542793 | None:intergenic | 35.0% |
| !! | AAGCTTAAGAGTATTCTTGG+TGG | - | chr8.3:70543322-70543341 | MS.gene07904:CDS | 35.0% |
| !! | TTGAACAGAAGCATTGGAAA+TGG | + | chr8.3:70542768-70542787 | None:intergenic | 35.0% |
| AAGAACAGGATCAAGGAAAG+TGG | + | chr8.3:70543296-70543315 | None:intergenic | 40.0% | |
| AGCAACAAATGCAGGTGTAA+CGG | + | chr8.3:70542930-70542949 | None:intergenic | 40.0% | |
| GCTCAATTTCCAGGTGTTAA+TGG | - | chr8.3:70542947-70542966 | MS.gene07904:CDS | 40.0% | |
| GGAAATTGAGCAACAAATGC+AGG | + | chr8.3:70542938-70542957 | None:intergenic | 40.0% | |
| TCTTGACAAGAACAGGATCA+AGG | + | chr8.3:70543303-70543322 | None:intergenic | 40.0% | |
| TGGATAGGAAAAGTGAAAGG+AGG | + | chr8.3:70542748-70542767 | None:intergenic | 40.0% | |
| TTTCCAGGTGTTAATGGTCT+TGG | - | chr8.3:70542953-70542972 | MS.gene07904:CDS | 40.0% | |
| TTTGAAGGCTTAATTGCACC+TGG | - | chr8.3:70542878-70542897 | MS.gene07904:CDS | 40.0% | |
| ! | GAACTTCTTGTTGTGACACA+AGG | - | chr8.3:70543046-70543065 | MS.gene07904:CDS | 40.0% |
| ! | GAGCTTATGGTTTTTCCACA+AGG | - | chr8.3:70543133-70543152 | MS.gene07904:CDS | 40.0% |
| ! | GCATTTGTTGCTCAATTTCC+AGG | - | chr8.3:70542938-70542957 | MS.gene07904:CDS | 40.0% |
| !! | CAGAAGCATTGGAAATGGAT+AGG | + | chr8.3:70542763-70542782 | None:intergenic | 40.0% |
| !! | TTGCATTTTCAAGCTACTGC+TGG | - | chr8.3:70543160-70543179 | MS.gene07904:CDS | 40.0% |
| !!! | GTTTTTAGTAGTGCTAGTCC+TGG | - | chr8.3:70543208-70543227 | MS.gene07904:CDS | 40.0% |
| AACAAATGCAGGTGTAACGG+CGG | + | chr8.3:70542927-70542946 | None:intergenic | 45.0% | |
| ACAAGAAGTTCACTAGCACC+AGG | + | chr8.3:70543037-70543056 | None:intergenic | 45.0% | |
| AGACCAAGACCATTAACACC+TGG | + | chr8.3:70542959-70542978 | None:intergenic | 45.0% | |
| CAAGAAGTTCACTAGCACCA+GGG | + | chr8.3:70543036-70543055 | None:intergenic | 45.0% | |
| !! | AAGAGTATTCTTGGTGGCAG+TGG | - | chr8.3:70543328-70543347 | MS.gene07904:CDS | 45.0% |
| AAAGGCTCAGACACTCCTTC+AGG | - | chr8.3:70542809-70542828 | MS.gene07904:CDS | 50.0% | |
| ACACAAGGTCACATCACTGC+TGG | - | chr8.3:70543061-70543080 | MS.gene07904:CDS | 50.0% | |
| TCTGCAGCAAGGTTAGACCT+TGG | - | chr8.3:70542980-70542999 | MS.gene07904:CDS | 50.0% | |
| TGAAGTGGGATAACACCAGC+AGG | + | chr8.3:70543007-70543026 | None:intergenic | 50.0% | |
| ! | TCTGAGGTTACTGTTGCAGC+TGG | + | chr8.3:70542848-70542867 | None:intergenic | 50.0% |
| AGGTTAGACCTTGGTCCTGC+TGG | - | chr8.3:70542989-70543008 | MS.gene07904:CDS | 55.0% | |
| ATCCCACTTCACACTCACCC+TGG | - | chr8.3:70543016-70543035 | MS.gene07904:CDS | 55.0% | |
| CACCAGGGTGAGTGTGAAGT+GGG | + | chr8.3:70543021-70543040 | None:intergenic | 55.0% | |
| GGATAACACCAGCAGGACCA+AGG | + | chr8.3:70543000-70543019 | None:intergenic | 55.0% | |
| GTCTTGGTCTCTCTGCAGCA+AGG | - | chr8.3:70542969-70542988 | MS.gene07904:CDS | 55.0% | |
| !! | ACTGTTGCAGCTGGCTTGCA+AGG | + | chr8.3:70542839-70542858 | None:intergenic | 55.0% |
| !! | CTGTTGCAGCTGGCTTGCAA+GGG | + | chr8.3:70542838-70542857 | None:intergenic | 55.0% |
| GCACCAGGGTGAGTGTGAAG+TGG | + | chr8.3:70543022-70543041 | None:intergenic | 60.0% | |
| GGCTTGCAAGGGTAGCCTGA+AGG | + | chr8.3:70542827-70542846 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 70542728 | 70543354 | 70542728 | ID=MS.gene07904 |
| chr8.3 | mRNA | 70542728 | 70543354 | 70542728 | ID=MS.gene07904.t1;Parent=MS.gene07904 |
| chr8.3 | exon | 70542728 | 70543354 | 70542728 | ID=MS.gene07904.t1.exon1;Parent=MS.gene07904.t1 |
| chr8.3 | CDS | 70542728 | 70543354 | 70542728 | ID=cds.MS.gene07904.t1;Parent=MS.gene07904.t1 |
| Gene Sequence |
| Protein sequence |
