AlfalfaGEDB | MS.gene90788

M. sativa cultivar XinJiangDaYe / MS.gene90788

KEGG: -
GO: -
PFAM: PF04755.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90788.t1	XP_003592813.1	98.3	289	5	0	8	296	75	363	3.90E-158	567.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90788.t1	Q8LAP6	69.7	290	87	1	8	296	97	386	7.8e-115	414.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90788.t1	G7IAX8	98.3	289	5	0	8	296	75	363	2.8e-158	567.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene90788	0.861326	1.11E-63	-1.69E-46
MS.gene049171	MS.gene90788	0.853959	1.69E-61	-1.69E-46
MS.gene049173	MS.gene90788	0.852302	5.05E-61	-1.69E-46
MS.gene049217	MS.gene90788	0.884508	1.81E-71	-1.69E-46
MS.gene049222	MS.gene90788	0.891532	3.65E-74	-1.69E-46
MS.gene049232	MS.gene90788	0.810672	1.03E-50	-1.69E-46
MS.gene049285	MS.gene90788	0.879509	1.18E-69	-1.69E-46
MS.gene049320	MS.gene90788	0.880255	6.38E-70	-1.69E-46
MS.gene049351	MS.gene90788	0.814278	1.67E-51	-1.69E-46
MS.gene049356	MS.gene90788	0.840754	7.19E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90788.t1	MTR_1g116320	98.270	289	5	0	8	296	75	363	0.0	580
MS.gene90788.t1	MTR_1g116320	84.429	289	5	1	8	296	75	323	3.31e-172	480

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90788.t1	AT1G51110	69.655	290	87	1	8	296	97	386	1.07e-148	423

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Find 81 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGGCAGCAGCATCCAT+TGG	0.529399	1.4:+88213491	MS.gene90788:intron
AACTTCTTGCCAAATTCCAG+GGG	0.647151	1.4:-88215120	None:intergenic
AAGTAGGCCCAAAGTGTACG+AGG	0.669717	1.4:+88215053	MS.gene90788:CDS
AATAATAATAACAACCTGAA+TGG	0.411588	1.4:-88212643	None:intergenic
AATGAGTGTTACAGATTGTT+GGG	0.412973	1.4:+88214388	MS.gene90788:intron
AATGCTGCCAATGGTCTGAT+GGG	0.614840	1.4:+88214286	MS.gene90788:CDS
AATTCCAGGGGATATCCAAA+TGG	0.479222	1.4:-88215108	None:intergenic
ACAAATTCAAGTTTGATTGA+GGG	0.481218	1.4:+88212576	MS.gene90788:CDS
ACCACATACTTGTCGCATTC+AGG	0.425272	1.4:+88213638	MS.gene90788:CDS
ACGTGGTTAATATCTTGCTT+GGG	0.492417	1.4:+88214430	MS.gene90788:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCGTCATATCACTCAATA+TGG	+	chr1.4:88212797-88212816	MS.gene90788:intron	30.0%
AATGAGTGTTACAGATTGTT+GGG	+	chr1.4:88214388-88214407	MS.gene90788:intron	30.0%
ACTGGATATGGAACTTTAAA+TGG	-	chr1.4:88213575-88213594	None:intergenic	30.0%
AGCAACATATATATAGTGCA+GGG	+	chr1.4:88213821-88213840	MS.gene90788:intron	30.0%
ATAGTCATCACTAGATTATC+AGG	+	chr1.4:88214960-88214979	MS.gene90788:intron	30.0%
GAACTTGATTCAATCAGAAT+GGG	+	chr1.4:88214782-88214801	MS.gene90788:intron	30.0%
TAGTCATCACTAGATTATCA+GGG	+	chr1.4:88214961-88214980	MS.gene90788:intron	30.0%
TATTAACAGCAATTTCATCG+GGG	+	chr1.4:88213888-88213907	MS.gene90788:CDS	30.0%
TCATGTCCTTCAATTTAAAC+AGG	+	chr1.4:88213475-88213494	MS.gene90788:intron	30.0%
TCTTTCAGAGAACATTTGTT+GGG	+	chr1.4:88212837-88212856	MS.gene90788:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	88212113	88215161	88212113	ID=MS.gene90788
chr1.4	mRNA	88212113	88215161	88212113	ID=MS.gene90788.t1;Parent=MS.gene90788
chr1.4	exon	88212113	88212139	88212113	ID=MS.gene90788.t1.exon1;Parent=MS.gene90788.t1
chr1.4	CDS	88212113	88212139	88212113	ID=cds.MS.gene90788.t1;Parent=MS.gene90788.t1
chr1.4	exon	88212424	88212477	88212424	ID=MS.gene90788.t1.exon2;Parent=MS.gene90788.t1
chr1.4	CDS	88212424	88212477	88212424	ID=cds.MS.gene90788.t1;Parent=MS.gene90788.t1
chr1.4	exon	88212576	88212650	88212576	ID=MS.gene90788.t1.exon3;Parent=MS.gene90788.t1
chr1.4	CDS	88212576	88212650	88212576	ID=cds.MS.gene90788.t1;Parent=MS.gene90788.t1
chr1.4	exon	88212845	88212964	88212845	ID=MS.gene90788.t1.exon4;Parent=MS.gene90788.t1
chr1.4	CDS	88212845	88212964	88212845	ID=cds.MS.gene90788.t1;Parent=MS.gene90788.t1
chr1.4	exon	88213497	88213688	88213497	ID=MS.gene90788.t1.exon5;Parent=MS.gene90788.t1
chr1.4	CDS	88213497	88213688	88213497	ID=cds.MS.gene90788.t1;Parent=MS.gene90788.t1
chr1.4	exon	88213842	88213925	88213842	ID=MS.gene90788.t1.exon6;Parent=MS.gene90788.t1
chr1.4	CDS	88213842	88213925	88213842	ID=cds.MS.gene90788.t1;Parent=MS.gene90788.t1
chr1.4	exon	88214009	88214101	88214009	ID=MS.gene90788.t1.exon7;Parent=MS.gene90788.t1
chr1.4	CDS	88214009	88214101	88214009	ID=cds.MS.gene90788.t1;Parent=MS.gene90788.t1
chr1.4	exon	88214262	88214315	88214262	ID=MS.gene90788.t1.exon8;Parent=MS.gene90788.t1
chr1.4	CDS	88214262	88214315	88214262	ID=cds.MS.gene90788.t1;Parent=MS.gene90788.t1
chr1.4	exon	88214402	88214481	88214402	ID=MS.gene90788.t1.exon9;Parent=MS.gene90788.t1
chr1.4	CDS	88214402	88214481	88214402	ID=cds.MS.gene90788.t1;Parent=MS.gene90788.t1
chr1.4	exon	88215050	88215161	88215050	ID=MS.gene90788.t1.exon10;Parent=MS.gene90788.t1
chr1.4	CDS	88215050	88215161	88215050	ID=cds.MS.gene90788.t1;Parent=MS.gene90788.t1

Gene Sequence

>MS.gene90788

ATGGCTCTCACTCTCAGAGTTGTGAATGTAAACAATATAGGATTTGAGTCATGTTCACGTTGTTCAACTTTCGTTTCTCCCAATCCCTCAAATTCTCGCTTCGTGTCTGCTGGGTGTTCTAAAGTTGAGCAAATTTCAGTTGTTACTGAAGAATCTGAAAACTCACTCATCCAAGCTCTTGTTGGCATCCAAGGACGTGGACGTTCTTCTTCTCCACAGCAACTCAACGTCTCTCTCTCTCTCTCTTTCTTACTTTCATAATTTTATATCAATATGTATGTTCCTTCCTGAATTTTACCATCACCTTTCAGGCTATTGAGCGTGCTATTCAAGTCCTAGAACGTATAGGGGGTGTGTCTGATCCGGTTCGTCTTCAATTTTGCTCTCTTTGTTTAACTTATTCATTATCCTTTTTCATGAGATGATAGACCAATCTATTTTCTCTTCTCTTTCTGTTCTGCAGACAAATTCAAGTTTGATTGAGGGTCGCTGGCAGCTCATTTTCACTACAAGACCTGGAACAGCATCACCCATTCAGGTTGTTATTATTATTATTATTATGTTACTGTAAAGCTGCATATATTATGTTTCTCATCTTTAAATTTAGAAATATACTTCCAACTTGATAATACCTACCTAACACAACAAGGATCACTCACCTGTTCAATAGTTCAACACATGCTTAATCGTCATATCACTCAATATGGTATTCTTTCTATATTGCTCTTTCAGAGAACATTTGTTGGGGTTGATTTTTTTAGTGTATTTCAAGAGGTTTATCTTCAAACAAATGATCCACGCGTAACCAATATTGTGTCATTTTCTGATGCCATCGGTGAGCTCAAAGTTGAGGTAATACTAAGTAACTACAATTGGAGTTATCATAAATTTAATACACACTTCTGCTTTAAACTCTACTTCATTTTTTTTTTTTTTTGTAATACTATGCGAGACAGACTGAAACTAGTAAGTTTTTTAGTTTAAGAGGCTTAGTCAATATTGTGAAATGAATTATGCCACATAATTCTAAGGTTGGCTACCTCTTCAAAAATTTGTTAATAGTATTGTTAAAAATTACAGCGAATTTACTTGCTATGTGCTTCTAAAGAATCAAGAGTTAATATAGATAGCTTTCTGGCTTTCTTCGTGTCTATCAGGATAGTTGAATTCCCGTTTGTGTTTGTGCTTGTCATACAAAAAACCATTATATCATATAGCTGTTCATATATTTTACTATTTTATTCTCTGATCTTTTGAGACTTTGGTTTTTTGATAGAGTGAATTGATGTTGTTTGATCTATATGTCTGACCCTATCTCGTGGGACAAAGACTTCATTATTGCTCTCGCTCTTGTTCTTATACTCATGTCCTTCAATTTAAACAGGCAGCAGCATCCATTGGAGATGGAAAAAGAATCCTTTTTAGGTTTGACAGAGCTGCCTTTTCTTTCAAATTTCTTCCATTTAAAGTTCCATATCCAGTTCCATTTAAGCTACTCGGAGATGAAGCAAAGGGTTGGTTAGACACCACATACTTGTCGCATTCAGGAAACCTTCGTATCTCGAGAGGGAATAAGGTGATTAGGCATTTCCAATATAAACATCGTCATAATATATAGTCTTTTGTTCCTCCCCTCAATTAAAATGCTAGTTCGTCTAGCACATCAAATCGAAGCATTTTTATAAAAACAATGTTTCCAAGACTTAACAGCAACATATATATAGTGCAGGGAACCACATTTGTGCTGCAGAAGCAAACTGAACCTAGACAAAAGTTATTAACAGCAATTTCATCGGGGGTGGGTGTTCGAGAGGTAAGGGTGCTGGTTTTTTTTTTCAATAAACATAACTGGAATATTTCCATTGTCGCTATTTTTCACATCCTTAATTCCAACAGGCAATAGATAAACTCATTTCCTTAAATAAGAATTCTGGGGAAGAAGATCCAGAACTAGAAGAGGGCGAGTGGCAGATGATATGGAATTCACAGGTAGAGATTTTGAAATACAAACTAAAAGTTCCAACTAATAATTTTGTTTTTCTCATTTGAAGTTAATTTTTTTAGGGAGTACTGTTTGAAGATGATTTAAATGTAAACAATTATCTTACAAGGTTTTATTTTTCTTATGTAAACAACTTATTCTCTTTAGACTGTGACGGATAGTTGGTTAGAGAATGCTGCCAATGGTCTGATGGGAAAGCAGGTATCAAGTTCATCTTGTGCATTTAATTTAATTGCCACAAGTTCTGCCTCACGTTTACAGTTTGTGTATTACAATGAGTGTTACAGATTGTTGGGAAGAATGGACAAATAAAGTACGTGGTTAATATCTTGCTTGGGCTGAAGTTCTCCATGTCTGGAATTTTTGTGTAAGTTTCCATTGTTTAAAGTTTGCTAATGTTCAGGGGAGGGTCCTTACAAACACAATAAATATGAAGGAATGTAGACAATGAAGATAGGAATCTCTGAATTTTGAGAGTAAGAGAGAGAGAGAGAGAGAGGGTAGAAGTAATAACTGGAACCTGGGTTAGCATGTTAGGAAAGACTTCATATATTATACGAATGCTTTATGGTTATTAACGCCTTTCAGCAAGGACTCTTTTCTGTCTGCATGTCCTTGAAGTGGAGATGTAACGTAGGGGATTTCATGTTGGAATGTGATAAAGCTGGAACTTGATTCAATCAGAATGGGTTGCCTTCTATAAGTGGTTAAGACTAGACTTTTACTAGGTGTGCAGCTTAAATATTTTAGAGCATGGTTAAGGTTATAAAGTATAGGTTATAAAACAAAGTTGGTTTTCCTTCAAATCAATTACCATTTTCCCTGCGTGAAAATGAAAACTTTTAATAGTCATCACTAGATTATCAGGGATAAGGGGTCAGCGATTTTAGTTTTAGACATTAACAGAGATGAACTGAATATTTTTTACTTGACAGAAAAAGTAGGCCCAAAGTGTACGAGGTTACAATGGATGATGCAGCCATAATTGGTGGCCCATTTGGATATCCCCTGGAATTTGGCAAGAAGTTCATCTTGGAGATTCTGTAA

Protein sequence

>MS.gene90788.t1

MALTLRVVNAIERAIQVLERIGGVSDPTNSSLIEGRWQLIFTTRPGTASPIQRTFVGVDFFSVFQEVYLQTNDPRVTNIVSFSDAIGELKVEAAASIGDGKRILFRFDRAAFSFKFLPFKVPYPVPFKLLGDEAKGWLDTTYLSHSGNLRISRGNKGTTFVLQKQTEPRQKLLTAISSGVGVREAIDKLISLNKNSGEEDPELEEGEWQMIWNSQTVTDSWLENAANGLMGKQIVGKNGQIKYVVNILLGLKFSMSGIFVKSRPKVYEVTMDDAAIIGGPFGYPLEFGKKFILEIL