AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene90788


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90788.t1 MTR_1g116320 98.270 289 5 0 8 296 75 363 0.0 580
MS.gene90788.t1 MTR_1g116320 84.429 289 5 1 8 296 75 323 3.31e-172 480
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90788.t1 AT1G51110 69.655 290 87 1 8 296 97 386 1.07e-148 423

Find 81 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCCCAGAATTCTTATTTA+AGG 0.074360 1.4:-88214028 None:intergenic
TTTGGATATCCCCTGGAATT+TGG 0.199847 1.4:+88215111 MS.gene90788:CDS
ACTGGATATGGAACTTTAAA+TGG 0.214190 1.4:-88213572 None:intergenic
TCCAAATGGGCCACCAATTA+TGG 0.218507 1.4:-88215094 None:intergenic
ATTTCCTTAAATAAGAATTC+TGG 0.253516 1.4:+88214024 MS.gene90788:CDS
CAGCTCTGTCAAACCTAAAA+AGG 0.280928 1.4:-88213529 None:intergenic
TCATCTCCGAGTAGCTTAAA+TGG 0.283845 1.4:-88213596 None:intergenic
AGCTTAAATGGAACTGGATA+TGG 0.306171 1.4:-88213584 None:intergenic
TCGTATCTCGAGAGGGAATA+AGG 0.306326 1.4:+88213667 MS.gene90788:CDS
GCCATAATTGGTGGCCCATT+TGG 0.313713 1.4:+88215093 MS.gene90788:CDS
TGAATGGGTGATGCTGTTCC+AGG 0.324887 1.4:-88212627 None:intergenic
ATGGATGATGCAGCCATAAT+TGG 0.328954 1.4:+88215081 MS.gene90788:CDS
TTCAAGTCCTAGAACGTATA+GGG 0.331993 1.4:+88212440 MS.gene90788:CDS
TGAACTTCTTGCCAAATTCC+AGG 0.338221 1.4:-88215122 None:intergenic
CACTCGCCCTCTTCTAGTTC+TGG 0.346170 1.4:-88214057 None:intergenic
AGGGCGAGTGGCAGATGATA+TGG 0.354825 1.4:+88214070 MS.gene90788:CDS
ATCAGAAAATGACACAATAT+TGG 0.368308 1.4:-88212918 None:intergenic
TCTTTCAGAGAACATTTGTT+GGG 0.373540 1.4:+88212837 MS.gene90788:intron
TTTCCTTAAATAAGAATTCT+GGG 0.380530 1.4:+88214025 MS.gene90788:CDS
TGGAACAGCATCACCCATTC+AGG 0.383631 1.4:+88212629 MS.gene90788:CDS
CCGAGTAGCTTAAATGGAAC+TGG 0.390540 1.4:-88213590 None:intergenic
GGGCTGAAGTTCTCCATGTC+TGG 0.404879 1.4:+88214450 MS.gene90788:CDS
TTACAGATTGTTGGGAAGAA+TGG 0.408577 1.4:+88214396 MS.gene90788:intron
CTCTTTCAGAGAACATTTGT+TGG 0.410841 1.4:+88212836 MS.gene90788:intron
AATAATAATAACAACCTGAA+TGG 0.411588 1.4:-88212643 None:intergenic
AATGAGTGTTACAGATTGTT+GGG 0.412973 1.4:+88214388 MS.gene90788:intron
ATTCAAGTCCTAGAACGTAT+AGG 0.419239 1.4:+88212439 MS.gene90788:CDS
TGGAAGAAATTTGAAAGAAA+AGG 0.420561 1.4:-88213552 None:intergenic
GACAAATTCAAGTTTGATTG+AGG 0.420832 1.4:+88212575 MS.gene90788:intron
ACCACATACTTGTCGCATTC+AGG 0.425272 1.4:+88213638 MS.gene90788:CDS
CAATGAGTGTTACAGATTGT+TGG 0.428126 1.4:+88214387 MS.gene90788:intron
TACGTGGTTAATATCTTGCT+TGG 0.429109 1.4:+88214429 MS.gene90788:CDS
ATTGTAACCTCGTACACTTT+GGG 0.434349 1.4:-88215060 None:intergenic
CATTGTAACCTCGTACACTT+TGG 0.437989 1.4:-88215061 None:intergenic
TTATTAACAGCAATTTCATC+GGG 0.446100 1.4:+88213887 MS.gene90788:CDS
ATTTGGCAAGAAGTTCATCT+TGG 0.458400 1.4:+88215128 MS.gene90788:CDS
CAAGTTTGATTGAGGGTCGC+TGG 0.473813 1.4:+88212583 MS.gene90788:CDS
AATTCCAGGGGATATCCAAA+TGG 0.479222 1.4:-88215108 None:intergenic
ACAAATTCAAGTTTGATTGA+GGG 0.481218 1.4:+88212576 MS.gene90788:CDS
TTTAGACTGTGACGGATAGT+TGG 0.481678 1.4:+88214257 MS.gene90788:intron
CCAGTTCCATTTAAGCTACT+CGG 0.481795 1.4:+88213590 MS.gene90788:CDS
ATAATAATAACAACCTGAAT+GGG 0.485224 1.4:-88212642 None:intergenic
TGGCCCATTTGGATATCCCC+TGG 0.490686 1.4:+88215104 MS.gene90788:CDS
GTTATTAACAGCAATTTCAT+CGG 0.491170 1.4:+88213886 MS.gene90788:CDS
ACGTGGTTAATATCTTGCTT+GGG 0.492417 1.4:+88214430 MS.gene90788:CDS
CTTTCAGAGAACATTTGTTG+GGG 0.528025 1.4:+88212838 MS.gene90788:intron
AAACAGGCAGCAGCATCCAT+TGG 0.529399 1.4:+88213491 MS.gene90788:intron
CTGCTTTCCCATCAGACCAT+TGG 0.532262 1.4:-88214293 None:intergenic
GAACTTCTTGCCAAATTCCA+GGG 0.534199 1.4:-88215121 None:intergenic
ATTCCAGGGGATATCCAAAT+GGG 0.537199 1.4:-88215107 None:intergenic
CAATGGTCTGATGGGAAAGC+AGG 0.540494 1.4:+88214294 MS.gene90788:CDS
GAATGCTGCCAATGGTCTGA+TGG 0.545354 1.4:+88214285 MS.gene90788:CDS
TTATTCTCTTTAGACTGTGA+CGG 0.547393 1.4:+88214249 MS.gene90788:intron
GGAAACCTTCGTATCTCGAG+AGG 0.557760 1.4:+88213659 MS.gene90788:CDS
TTGCTTCTGCAGCACAAATG+TGG 0.568163 1.4:-88213846 None:intergenic
AGAAGATCCAGAACTAGAAG+AGG 0.571950 1.4:+88214050 MS.gene90788:CDS
CTCAACTTTGAGCTCACCGA+TGG 0.576956 1.4:-88212942 None:intergenic
GCAGCAGCATCCATTGGAGA+TGG 0.578573 1.4:+88213497 MS.gene90788:CDS
GCAGATGATATGGAATTCAC+AGG 0.579711 1.4:+88214080 MS.gene90788:CDS
TCCTGAATGCGACAAGTATG+TGG 0.590251 1.4:-88213639 None:intergenic
CAGAACTAGAAGAGGGCGAG+TGG 0.592200 1.4:+88214058 MS.gene90788:CDS
CTACTCGGAGATGAAGCAAA+GGG 0.602582 1.4:+88213605 MS.gene90788:CDS
CAAAGTGTACGAGGTTACAA+TGG 0.607400 1.4:+88215062 MS.gene90788:CDS
TGGTTAGAGAATGCTGCCAA+TGG 0.607813 1.4:+88214277 MS.gene90788:CDS
TCGGAGATGAAGCAAAGGGT+TGG 0.610464 1.4:+88213609 MS.gene90788:CDS
TCAAGTCCTAGAACGTATAG+GGG 0.612364 1.4:+88212441 MS.gene90788:CDS
AATGCTGCCAATGGTCTGAT+GGG 0.614840 1.4:+88214286 MS.gene90788:CDS
GACACAATATTGGTTACGCG+TGG 0.616061 1.4:-88212908 None:intergenic
TTCCTTAAATAAGAATTCTG+GGG 0.617362 1.4:+88214026 MS.gene90788:CDS
TATTCCCTCTCGAGATACGA+AGG 0.631516 1.4:-88213664 None:intergenic
GCTACTCGGAGATGAAGCAA+AGG 0.632918 1.4:+88213604 MS.gene90788:CDS
CATCGGTGAGCTCAAAGTTG+AGG 0.633284 1.4:+88212943 MS.gene90788:CDS
GATGATGCAGCCATAATTGG+TGG 0.633822 1.4:+88215084 MS.gene90788:CDS
GAAGATCCAGAACTAGAAGA+GGG 0.640333 1.4:+88214051 MS.gene90788:CDS
AACTTCTTGCCAAATTCCAG+GGG 0.647151 1.4:-88215120 None:intergenic
ATTAACAGCAATTTCATCGG+GGG 0.654374 1.4:+88213889 MS.gene90788:CDS
GAAACCTTCGTATCTCGAGA+GGG 0.664581 1.4:+88213660 MS.gene90788:CDS
AAGTAGGCCCAAAGTGTACG+AGG 0.669717 1.4:+88215053 MS.gene90788:CDS
TATTAACAGCAATTTCATCG+GGG 0.693361 1.4:+88213888 MS.gene90788:CDS
CAAGTCCTAGAACGTATAGG+GGG 0.705630 1.4:+88212442 MS.gene90788:CDS
GAATGGACAAATAAAGTACG+TGG 0.718510 1.4:+88214413 MS.gene90788:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGAAGTTAATTTTTTTA+GGG + chr1.4:88214156-88214175 MS.gene90788:intron 10.0%
!! AGAAAAACAAAATTATTAGT+TGG - chr1.4:88214135-88214154 None:intergenic 15.0%
!!! CATTTGAAGTTAATTTTTTT+AGG + chr1.4:88214155-88214174 MS.gene90788:intron 15.0%
!!! TTTTTTTCAATAAACATAAC+TGG + chr1.4:88213942-88213961 MS.gene90788:intron 15.0%
!! AATAATAATAACAACCTGAA+TGG - chr1.4:88212646-88212665 None:intergenic 20.0%
!! ATAATAATAACAACCTGAAT+GGG - chr1.4:88212645-88212664 None:intergenic 20.0%
!! ATGTAAACAATTATCTTACA+AGG + chr1.4:88214202-88214221 MS.gene90788:intron 20.0%
!! ATTTCCTTAAATAAGAATTC+TGG + chr1.4:88214024-88214043 MS.gene90788:CDS 20.0%
!! TAATACTAAGTAACTACAAT+TGG + chr1.4:88212966-88212985 MS.gene90788:intron 20.0%
!! TACAAACACAATAAATATGA+AGG + chr1.4:88214529-88214548 MS.gene90788:intron 20.0%
!! TATAGGTTATAAAACAAAGT+TGG + chr1.4:88214886-88214905 MS.gene90788:intron 20.0%
!! TATATTATACGAATGCTTTA+TGG + chr1.4:88214663-88214682 MS.gene90788:intron 20.0%
!! TATTATGACGATGTTTATAT+TGG - chr1.4:88213706-88213725 None:intergenic 20.0%
!! TCATATTTATTGTGTTTGTA+AGG - chr1.4:88214529-88214548 None:intergenic 20.0%
!! TTTCCTTAAATAAGAATTCT+GGG + chr1.4:88214025-88214044 MS.gene90788:CDS 20.0%
!!! AGTAAGTTTTTTAGTTTAAG+AGG + chr1.4:88213078-88213097 MS.gene90788:intron 20.0%
!!! CTATTAACAAATTTTTGAAG+AGG - chr1.4:88213155-88213174 None:intergenic 20.0%
!!! TTTTTTTAGTGTATTTCAAG+AGG + chr1.4:88212865-88212884 MS.gene90788:CDS 20.0%
! AAAGAGAAGAGAAAATAGAT+TGG - chr1.4:88212545-88212564 None:intergenic 25.0%
! AATTATGCCACATAATTCTA+AGG + chr1.4:88213122-88213141 MS.gene90788:intron 25.0%
! AGTTAATATAGATAGCTTTC+TGG + chr1.4:88213228-88213247 MS.gene90788:intron 25.0%
! ATCAGAAAATGACACAATAT+TGG - chr1.4:88212921-88212940 None:intergenic 25.0%
! CATTAGCAAACTTTAAACAA+TGG - chr1.4:88214493-88214512 None:intergenic 25.0%
! GTTATTAACAGCAATTTCAT+CGG + chr1.4:88213886-88213905 MS.gene90788:CDS 25.0%
! GTTGTGAATGTAAACAATAT+AGG + chr1.4:88212131-88212150 MS.gene90788:intron 25.0%
! TGAACAGCTATATGATATAA+TGG - chr1.4:88213317-88213336 None:intergenic 25.0%
! TGGAAGAAATTTGAAAGAAA+AGG - chr1.4:88213555-88213574 None:intergenic 25.0%
! TGGTTAAGGTTATAAAGTAT+AGG + chr1.4:88214869-88214888 MS.gene90788:intron 25.0%
! TTATTAACAGCAATTTCATC+GGG + chr1.4:88213887-88213906 MS.gene90788:CDS 25.0%
! TTCCTTAAATAAGAATTCTG+GGG + chr1.4:88214026-88214045 MS.gene90788:CDS 25.0%
!! ACAAATTCAAGTTTGATTGA+GGG + chr1.4:88212576-88212595 MS.gene90788:CDS 25.0%
!! ATGGAAAAAGAATCCTTTTT+AGG + chr1.4:88213516-88213535 MS.gene90788:CDS 25.0%
!! TTTTACTTGACAGAAAAAGT+AGG + chr1.4:88215037-88215056 MS.gene90788:intron 25.0%
!!! AATATTTTAGAGCATGGTTA+AGG + chr1.4:88214855-88214874 MS.gene90788:intron 25.0%
!!! AGCTTAAATATTTTAGAGCA+TGG + chr1.4:88214849-88214868 MS.gene90788:intron 25.0%
!!! GAAAATGGTAATTGATTTGA+AGG - chr1.4:88214916-88214935 None:intergenic 25.0%
!!! TTAAAGTTTGCTAATGTTCA+GGG + chr1.4:88214497-88214516 MS.gene90788:intron 25.0%
!!! TTTAAAGTTTGCTAATGTTC+AGG + chr1.4:88214496-88214515 MS.gene90788:intron 25.0%
AATCGTCATATCACTCAATA+TGG + chr1.4:88212797-88212816 MS.gene90788:intron 30.0%
AATGAGTGTTACAGATTGTT+GGG + chr1.4:88214388-88214407 MS.gene90788:intron 30.0%
ACTGGATATGGAACTTTAAA+TGG - chr1.4:88213575-88213594 None:intergenic 30.0%
AGCAACATATATATAGTGCA+GGG + chr1.4:88213821-88213840 MS.gene90788:intron 30.0%
ATAGTCATCACTAGATTATC+AGG + chr1.4:88214960-88214979 MS.gene90788:intron 30.0%
GAACTTGATTCAATCAGAAT+GGG + chr1.4:88214782-88214801 MS.gene90788:intron 30.0%
TAGTCATCACTAGATTATCA+GGG + chr1.4:88214961-88214980 MS.gene90788:intron 30.0%
TATTAACAGCAATTTCATCG+GGG + chr1.4:88213888-88213907 MS.gene90788:CDS 30.0%
TCATGTCCTTCAATTTAAAC+AGG + chr1.4:88213475-88213494 MS.gene90788:intron 30.0%
TCTTTCAGAGAACATTTGTT+GGG + chr1.4:88212837-88212856 MS.gene90788:intron 30.0%
TTACACAAAAATTCCAGACA+TGG - chr1.4:88214466-88214485 None:intergenic 30.0%
TTAGGTAGGTATTATCAAGT+TGG - chr1.4:88212733-88212752 None:intergenic 30.0%
TTATTCTCTTTAGACTGTGA+CGG + chr1.4:88214249-88214268 MS.gene90788:intron 30.0%
! AAAAGTTTTCATTTTCACGC+AGG - chr1.4:88214939-88214958 None:intergenic 30.0%
! AAAGTTTTCATTTTCACGCA+GGG - chr1.4:88214938-88214957 None:intergenic 30.0%
! GACAAATTCAAGTTTGATTG+AGG + chr1.4:88212575-88212594 MS.gene90788:intron 30.0%
! GCTGTTAATAACTTTTGTCT+AGG - chr1.4:88213878-88213897 None:intergenic 30.0%
! GTTAAGACTAGACTTTTACT+AGG + chr1.4:88214821-88214840 MS.gene90788:intron 30.0%
! TAGTCTTAACCACTTATAGA+AGG - chr1.4:88214811-88214830 None:intergenic 30.0%
! TATATGTTGCTGTTAAGTCT+TGG - chr1.4:88213812-88213831 None:intergenic 30.0%
! TTCCCCAGAATTCTTATTTA+AGG - chr1.4:88214031-88214050 None:intergenic 30.0%
!! TAAAGTTTGCTAATGTTCAG+GGG + chr1.4:88214498-88214517 MS.gene90788:intron 30.0%
!!! ACGAACTAGCATTTTAATTG+AGG - chr1.4:88213748-88213767 None:intergenic 30.0%
!!! CGAACTAGCATTTTAATTGA+GGG - chr1.4:88213747-88213766 None:intergenic 30.0%
!!! GAACTAGCATTTTAATTGAG+GGG - chr1.4:88213746-88213765 None:intergenic 30.0%
AATACCTACCTAACACAACA+AGG + chr1.4:88212740-88212759 MS.gene90788:intron 35.0%
ACGTGGTTAATATCTTGCTT+GGG + chr1.4:88214430-88214449 MS.gene90788:CDS 35.0%
ACTAGATTATCAGGGATAAG+GGG + chr1.4:88214969-88214988 MS.gene90788:intron 35.0%
AGAAGTAATAACTGGAACCT+GGG + chr1.4:88214617-88214636 MS.gene90788:intron 35.0%
AGCTTAAATGGAACTGGATA+TGG - chr1.4:88213587-88213606 None:intergenic 35.0%
ATACACAAACTGTAAACGTG+AGG - chr1.4:88214365-88214384 None:intergenic 35.0%
ATGACAAGCACAAACACAAA+CGG - chr1.4:88213286-88213305 None:intergenic 35.0%
ATGTTGGAATGTGATAAAGC+TGG + chr1.4:88214760-88214779 MS.gene90788:intron 35.0%
ATTAACAGCAATTTCATCGG+GGG + chr1.4:88213889-88213908 MS.gene90788:CDS 35.0%
ATTCAAGTCCTAGAACGTAT+AGG + chr1.4:88212439-88212458 MS.gene90788:CDS 35.0%
ATTGTAACCTCGTACACTTT+GGG - chr1.4:88215063-88215082 None:intergenic 35.0%
ATTTGGCAAGAAGTTCATCT+TGG + chr1.4:88215128-88215147 MS.gene90788:CDS 35.0%
CAATGAGTGTTACAGATTGT+TGG + chr1.4:88214387-88214406 MS.gene90788:intron 35.0%
CACTAGATTATCAGGGATAA+GGG + chr1.4:88214968-88214987 MS.gene90788:intron 35.0%
CAGCAACATATATATAGTGC+AGG + chr1.4:88213820-88213839 MS.gene90788:intron 35.0%
CATGTGTTGAACTATTGAAC+AGG - chr1.4:88212774-88212793 None:intergenic 35.0%
CTCTTTCAGAGAACATTTGT+TGG + chr1.4:88212836-88212855 MS.gene90788:intron 35.0%
GAATGGACAAATAAAGTACG+TGG + chr1.4:88214413-88214432 MS.gene90788:CDS 35.0%
GATGTGAAAAATAGCGACAA+TGG - chr1.4:88213975-88213994 None:intergenic 35.0%
GGAACTTGATTCAATCAGAA+TGG + chr1.4:88214781-88214800 MS.gene90788:intron 35.0%
GGAATGTAGACAATGAAGAT+AGG + chr1.4:88214550-88214569 MS.gene90788:intron 35.0%
GGTCTATCATCTCATGAAAA+AGG - chr1.4:88212524-88212543 None:intergenic 35.0%
TACGTGGTTAATATCTTGCT+TGG + chr1.4:88214429-88214448 MS.gene90788:CDS 35.0%
TAGAAGTAATAACTGGAACC+TGG + chr1.4:88214616-88214635 MS.gene90788:intron 35.0%
TAGCCAACCTTAGAATTATG+TGG - chr1.4:88213132-88213151 None:intergenic 35.0%
TCACTAGATTATCAGGGATA+AGG + chr1.4:88214967-88214986 MS.gene90788:intron 35.0%
TCTATTGCCTGTTGGAATTA+AGG - chr1.4:88213997-88214016 None:intergenic 35.0%
TGAGTTTATCTATTGCCTGT+TGG - chr1.4:88214005-88214024 None:intergenic 35.0%
TTACAGATTGTTGGGAAGAA+TGG + chr1.4:88214396-88214415 MS.gene90788:intron 35.0%
TTCAAGTCCTAGAACGTATA+GGG + chr1.4:88212440-88212459 MS.gene90788:CDS 35.0%
TTCACATCCTTAATTCCAAC+AGG + chr1.4:88213987-88214006 MS.gene90788:intron 35.0%
! CTTTCAGAGAACATTTGTTG+GGG + chr1.4:88212838-88212857 MS.gene90788:intron 35.0%
! GAAAGGTGATGGTAAAATTC+AGG - chr1.4:88212402-88212421 None:intergenic 35.0%
! GAATTTTACCATCACCTTTC+AGG + chr1.4:88212402-88212421 MS.gene90788:intron 35.0%
! GATTCTTTTTCCATCTCCAA+TGG - chr1.4:88213510-88213529 None:intergenic 35.0%
!! ATGCCACATAATTCTAAGGT+TGG + chr1.4:88213126-88213145 MS.gene90788:intron 35.0%
!!! TCTCTGATCTTTTGAGACTT+TGG + chr1.4:88213355-88213374 MS.gene90788:intron 35.0%
AACTTCTTGCCAAATTCCAG+GGG - chr1.4:88215123-88215142 None:intergenic 40.0%
AAGCGAGAATTTGAGGGATT+GGG - chr1.4:88212194-88212213 None:intergenic 40.0%
AATTCCAGGGGATATCCAAA+TGG - chr1.4:88215111-88215130 None:intergenic 40.0%
AGAAAAGAGTCCTTGCTGAA+AGG - chr1.4:88214698-88214717 None:intergenic 40.0%
AGAAGATCCAGAACTAGAAG+AGG + chr1.4:88214050-88214069 MS.gene90788:CDS 40.0%
ATGGATGATGCAGCCATAAT+TGG + chr1.4:88215081-88215100 MS.gene90788:CDS 40.0%
ATTCCAGGGGATATCCAAAT+GGG - chr1.4:88215110-88215129 None:intergenic 40.0%
CAAAGTGTACGAGGTTACAA+TGG + chr1.4:88215062-88215081 MS.gene90788:CDS 40.0%
CAGCTCTGTCAAACCTAAAA+AGG - chr1.4:88213532-88213551 None:intergenic 40.0%
CATTGTAACCTCGTACACTT+TGG - chr1.4:88215064-88215083 None:intergenic 40.0%
CCAGTTCCATTTAAGCTACT+CGG + chr1.4:88213590-88213609 MS.gene90788:CDS 40.0%
CTGCTGCCTGTTTAAATTGA+AGG - chr1.4:88213484-88213503 None:intergenic 40.0%
GAACTTCTTGCCAAATTCCA+GGG - chr1.4:88215124-88215143 None:intergenic 40.0%
GAAGATCCAGAACTAGAAGA+GGG + chr1.4:88214051-88214070 MS.gene90788:CDS 40.0%
GAGAGGGTAGAAGTAATAAC+TGG + chr1.4:88214609-88214628 MS.gene90788:intron 40.0%
GAGCAAAATTGAAGACGAAC+CGG - chr1.4:88212478-88212497 None:intergenic 40.0%
GCAGATGATATGGAATTCAC+AGG + chr1.4:88214080-88214099 MS.gene90788:CDS 40.0%
GTTATTAACGCCTTTCAGCA+AGG + chr1.4:88214685-88214704 MS.gene90788:intron 40.0%
TAACGTAGGGGATTTCATGT+TGG + chr1.4:88214744-88214763 MS.gene90788:intron 40.0%
TACGTTACATCTCCACTTCA+AGG - chr1.4:88214731-88214750 None:intergenic 40.0%
TCAAGTCCTAGAACGTATAG+GGG + chr1.4:88212441-88212460 MS.gene90788:CDS 40.0%
TCATCTCCGAGTAGCTTAAA+TGG - chr1.4:88213599-88213618 None:intergenic 40.0%
TGAACTTCTTGCCAAATTCC+AGG - chr1.4:88215125-88215144 None:intergenic 40.0%
TGAAGTGGAGATGTAACGTA+GGG + chr1.4:88214731-88214750 MS.gene90788:intron 40.0%
TGACAAGCACAAACACAAAC+GGG - chr1.4:88213285-88213304 None:intergenic 40.0%
TTGAAGTGGAGATGTAACGT+AGG + chr1.4:88214730-88214749 MS.gene90788:intron 40.0%
TTTGGATATCCCCTGGAATT+TGG + chr1.4:88215111-88215130 MS.gene90788:CDS 40.0%
! CTCATTTTCACTACAAGACC+TGG + chr1.4:88212609-88212628 MS.gene90788:CDS 40.0%
! GGTGATGGTAAAATTCAGGA+AGG - chr1.4:88212398-88212417 None:intergenic 40.0%
! TCATTTTCACGCAGGGAAAA+TGG - chr1.4:88214931-88214950 None:intergenic 40.0%
! TGAGTGATCCTTGTTGTGTT+AGG - chr1.4:88212751-88212770 None:intergenic 40.0%
! TGATCCTTGTTGTGTTAGGT+AGG - chr1.4:88212747-88212766 None:intergenic 40.0%
!! AATGGGTTGCCTTCTATAAG+TGG + chr1.4:88214799-88214818 MS.gene90788:intron 40.0%
!! TTTAGACTGTGACGGATAGT+TGG + chr1.4:88214257-88214276 MS.gene90788:intron 40.0%
!!! CTAGCATTTTAATTGAGGGG+AGG - chr1.4:88213743-88213762 None:intergenic 40.0%
!!! GTGTCATTTTCTGATGCCAT+CGG + chr1.4:88212926-88212945 MS.gene90788:CDS 40.0%
AAGAGAGAGAGAGAGAGAGA+GGG + chr1.4:88214593-88214612 MS.gene90788:intron 45.0%
AAGTCTTTGTCCCACGAGAT+AGG - chr1.4:88213426-88213445 None:intergenic 45.0%
AATGCTGCCAATGGTCTGAT+GGG + chr1.4:88214286-88214305 MS.gene90788:CDS 45.0%
ACCACATACTTGTCGCATTC+AGG + chr1.4:88213638-88213657 MS.gene90788:CDS 45.0%
AGACACGAAGCGAGAATTTG+AGG - chr1.4:88212201-88212220 None:intergenic 45.0%
AGTCTTTGTCCCACGAGATA+GGG - chr1.4:88213425-88213444 None:intergenic 45.0%
ATATGTCTGACCCTATCTCG+TGG + chr1.4:88213412-88213431 MS.gene90788:intron 45.0%
CAAGTCCTAGAACGTATAGG+GGG + chr1.4:88212442-88212461 MS.gene90788:CDS 45.0%
CCGAGTAGCTTAAATGGAAC+TGG - chr1.4:88213593-88213612 None:intergenic 45.0%
CGAGAGGGAATAAGGTGATT+AGG + chr1.4:88213675-88213694 MS.gene90788:intron 45.0%
CTACTCGGAGATGAAGCAAA+GGG + chr1.4:88213605-88213624 MS.gene90788:CDS 45.0%
CTCAATAGCCTGAAAGGTGA+TGG - chr1.4:88212413-88212432 None:intergenic 45.0%
CTTTCCTAACATGCTAACCC+AGG - chr1.4:88214637-88214656 None:intergenic 45.0%
GAAACCTTCGTATCTCGAGA+GGG + chr1.4:88213660-88213679 MS.gene90788:CDS 45.0%
GAAGCGAGAATTTGAGGGAT+TGG - chr1.4:88212195-88212214 None:intergenic 45.0%
GAAGTGGAGATGTAACGTAG+GGG + chr1.4:88214732-88214751 MS.gene90788:intron 45.0%
GACACGAAGCGAGAATTTGA+GGG - chr1.4:88212200-88212219 None:intergenic 45.0%
GATGATGCAGCCATAATTGG+TGG + chr1.4:88215084-88215103 MS.gene90788:CDS 45.0%
TAAACGTGAGGCAGAACTTG+TGG - chr1.4:88214353-88214372 None:intergenic 45.0%
TAAGAGAGAGAGAGAGAGAG+AGG + chr1.4:88214592-88214611 MS.gene90788:intron 45.0%
TATGTCTGACCCTATCTCGT+GGG + chr1.4:88213413-88213432 MS.gene90788:intron 45.0%
TATTCCCTCTCGAGATACGA+AGG - chr1.4:88213667-88213686 None:intergenic 45.0%
TCACTCATCCAAGCTCTTGT+TGG + chr1.4:88212275-88212294 MS.gene90788:intron 45.0%
TCCAAATGGGCCACCAATTA+TGG - chr1.4:88215097-88215116 None:intergenic 45.0%
TCCTGAATGCGACAAGTATG+TGG - chr1.4:88213642-88213661 None:intergenic 45.0%
TCGTATCTCGAGAGGGAATA+AGG + chr1.4:88213667-88213686 MS.gene90788:CDS 45.0%
TGGCTTTCTTCGTGTCTATC+AGG + chr1.4:88213248-88213267 MS.gene90788:intron 45.0%
TGGTTAGAGAATGCTGCCAA+TGG + chr1.4:88214277-88214296 MS.gene90788:CDS 45.0%
TTGCTTCTGCAGCACAAATG+TGG - chr1.4:88213849-88213868 None:intergenic 45.0%
! GACACAATATTGGTTACGCG+TGG - chr1.4:88212911-88212930 None:intergenic 45.0%
! GTTTGCTAATGTTCAGGGGA+GGG + chr1.4:88214502-88214521 MS.gene90788:intron 45.0%
!! AGTTTGCTAATGTTCAGGGG+AGG + chr1.4:88214501-88214520 MS.gene90788:intron 45.0%
AAACAGGCAGCAGCATCCAT+TGG + chr1.4:88213491-88213510 MS.gene90788:intron 50.0%
AACAGCAATTTCATCGGGGG+TGG + chr1.4:88213892-88213911 MS.gene90788:CDS 50.0%
AAGAAGAACGTCCACGTCCT+TGG - chr1.4:88212304-88212323 None:intergenic 50.0%
AAGTAGGCCCAAAGTGTACG+AGG + chr1.4:88215053-88215072 MS.gene90788:CDS 50.0%
AATTCTCGCTTCGTGTCTGC+TGG + chr1.4:88212203-88212222 MS.gene90788:intron 50.0%
ACACACCCCCTATACGTTCT+AGG - chr1.4:88212450-88212469 None:intergenic 50.0%
ACAGCAATTTCATCGGGGGT+GGG + chr1.4:88213893-88213912 MS.gene90788:CDS 50.0%
AGCACGCTCAATAGCCTGAA+AGG - chr1.4:88212419-88212438 None:intergenic 50.0%
ATTCTCGCTTCGTGTCTGCT+GGG + chr1.4:88212204-88212223 MS.gene90788:intron 50.0%
CAAGCTCTTGTTGGCATCCA+AGG + chr1.4:88212284-88212303 MS.gene90788:intron 50.0%
CAAGTTTGATTGAGGGTCGC+TGG + chr1.4:88212583-88212602 MS.gene90788:CDS 50.0%
CAATGGTCTGATGGGAAAGC+AGG + chr1.4:88214294-88214313 MS.gene90788:CDS 50.0%
CATCGGTGAGCTCAAAGTTG+AGG + chr1.4:88212943-88212962 MS.gene90788:CDS 50.0%
CTCAACTTTGAGCTCACCGA+TGG - chr1.4:88212945-88212964 None:intergenic 50.0%
CTGCTTTCCCATCAGACCAT+TGG - chr1.4:88214296-88214315 None:intergenic 50.0%
CTGTCTGCATGTCCTTGAAG+TGG + chr1.4:88214716-88214735 MS.gene90788:intron 50.0%
CTTGGATGCCAACAAGAGCT+TGG - chr1.4:88212286-88212305 None:intergenic 50.0%
GAATGCTGCCAATGGTCTGA+TGG + chr1.4:88214285-88214304 MS.gene90788:CDS 50.0%
GCTACTCGGAGATGAAGCAA+AGG + chr1.4:88213604-88213623 MS.gene90788:CDS 50.0%
GGAAACCTTCGTATCTCGAG+AGG + chr1.4:88213659-88213678 MS.gene90788:CDS 50.0%
TCGGAGATGAAGCAAAGGGT+TGG + chr1.4:88213609-88213628 MS.gene90788:CDS 50.0%
TGAATGGGTGATGCTGTTCC+AGG - chr1.4:88212630-88212649 None:intergenic 50.0%
TGGAACAGCATCACCCATTC+AGG + chr1.4:88212629-88212648 MS.gene90788:CDS 50.0%
! AGAGAGACGTTGAGTTGCTG+TGG - chr1.4:88212329-88212348 None:intergenic 50.0%
! GCCATAATTGGTGGCCCATT+TGG + chr1.4:88215093-88215112 MS.gene90788:CDS 50.0%
! TATAGGGGGTGTGTCTGATC+CGG + chr1.4:88212456-88212475 MS.gene90788:CDS 50.0%
!! GGAACCTGGGTTAGCATGTT+AGG + chr1.4:88214630-88214649 MS.gene90788:intron 50.0%
AGGGCGAGTGGCAGATGATA+TGG + chr1.4:88214070-88214089 MS.gene90788:CDS 55.0%
CAGAACTAGAAGAGGGCGAG+TGG + chr1.4:88214058-88214077 MS.gene90788:CDS 55.0%
CTTGTTGGCATCCAAGGACG+TGG + chr1.4:88212290-88212309 MS.gene90788:intron 55.0%
GCAGCAGCATCCATTGGAGA+TGG + chr1.4:88213497-88213516 MS.gene90788:CDS 55.0%
GGGCTGAAGTTCTCCATGTC+TGG + chr1.4:88214450-88214469 MS.gene90788:CDS 55.0%
GGTGGGTGTTCGAGAGGTAA+GGG + chr1.4:88213910-88213929 MS.gene90788:intron 55.0%
TGGCCCATTTGGATATCCCC+TGG + chr1.4:88215104-88215123 MS.gene90788:CDS 55.0%
! TGTTCGAGAGGTAAGGGTGC+TGG + chr1.4:88213916-88213935 MS.gene90788:intron 55.0%
!! CACTCGCCCTCTTCTAGTTC+TGG - chr1.4:88214060-88214079 None:intergenic 55.0%
GGGTGGGTGTTCGAGAGGTA+AGG + chr1.4:88213909-88213928 MS.gene90788:intron 60.0%
ATCGGGGGTGGGTGTTCGAG+AGG + chr1.4:88213904-88213923 MS.gene90788:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 88212113 88215161 88212113 ID=MS.gene90788
chr1.4 mRNA 88212113 88215161 88212113 ID=MS.gene90788.t1;Parent=MS.gene90788
chr1.4 exon 88212113 88212139 88212113 ID=MS.gene90788.t1.exon1;Parent=MS.gene90788.t1
chr1.4 CDS 88212113 88212139 88212113 ID=cds.MS.gene90788.t1;Parent=MS.gene90788.t1
chr1.4 exon 88212424 88212477 88212424 ID=MS.gene90788.t1.exon2;Parent=MS.gene90788.t1
chr1.4 CDS 88212424 88212477 88212424 ID=cds.MS.gene90788.t1;Parent=MS.gene90788.t1
chr1.4 exon 88212576 88212650 88212576 ID=MS.gene90788.t1.exon3;Parent=MS.gene90788.t1
chr1.4 CDS 88212576 88212650 88212576 ID=cds.MS.gene90788.t1;Parent=MS.gene90788.t1
chr1.4 exon 88212845 88212964 88212845 ID=MS.gene90788.t1.exon4;Parent=MS.gene90788.t1
chr1.4 CDS 88212845 88212964 88212845 ID=cds.MS.gene90788.t1;Parent=MS.gene90788.t1
chr1.4 exon 88213497 88213688 88213497 ID=MS.gene90788.t1.exon5;Parent=MS.gene90788.t1
chr1.4 CDS 88213497 88213688 88213497 ID=cds.MS.gene90788.t1;Parent=MS.gene90788.t1
chr1.4 exon 88213842 88213925 88213842 ID=MS.gene90788.t1.exon6;Parent=MS.gene90788.t1
chr1.4 CDS 88213842 88213925 88213842 ID=cds.MS.gene90788.t1;Parent=MS.gene90788.t1
chr1.4 exon 88214009 88214101 88214009 ID=MS.gene90788.t1.exon7;Parent=MS.gene90788.t1
chr1.4 CDS 88214009 88214101 88214009 ID=cds.MS.gene90788.t1;Parent=MS.gene90788.t1
chr1.4 exon 88214262 88214315 88214262 ID=MS.gene90788.t1.exon8;Parent=MS.gene90788.t1
chr1.4 CDS 88214262 88214315 88214262 ID=cds.MS.gene90788.t1;Parent=MS.gene90788.t1
chr1.4 exon 88214402 88214481 88214402 ID=MS.gene90788.t1.exon9;Parent=MS.gene90788.t1
chr1.4 CDS 88214402 88214481 88214402 ID=cds.MS.gene90788.t1;Parent=MS.gene90788.t1
chr1.4 exon 88215050 88215161 88215050 ID=MS.gene90788.t1.exon10;Parent=MS.gene90788.t1
chr1.4 CDS 88215050 88215161 88215050 ID=cds.MS.gene90788.t1;Parent=MS.gene90788.t1
Gene Sequence

>MS.gene90788

ATGGCTCTCACTCTCAGAGTTGTGAATGTAAACAATATAGGATTTGAGTCATGTTCACGTTGTTCAACTTTCGTTTCTCCCAATCCCTCAAATTCTCGCTTCGTGTCTGCTGGGTGTTCTAAAGTTGAGCAAATTTCAGTTGTTACTGAAGAATCTGAAAACTCACTCATCCAAGCTCTTGTTGGCATCCAAGGACGTGGACGTTCTTCTTCTCCACAGCAACTCAACGTCTCTCTCTCTCTCTCTTTCTTACTTTCATAATTTTATATCAATATGTATGTTCCTTCCTGAATTTTACCATCACCTTTCAGGCTATTGAGCGTGCTATTCAAGTCCTAGAACGTATAGGGGGTGTGTCTGATCCGGTTCGTCTTCAATTTTGCTCTCTTTGTTTAACTTATTCATTATCCTTTTTCATGAGATGATAGACCAATCTATTTTCTCTTCTCTTTCTGTTCTGCAGACAAATTCAAGTTTGATTGAGGGTCGCTGGCAGCTCATTTTCACTACAAGACCTGGAACAGCATCACCCATTCAGGTTGTTATTATTATTATTATTATGTTACTGTAAAGCTGCATATATTATGTTTCTCATCTTTAAATTTAGAAATATACTTCCAACTTGATAATACCTACCTAACACAACAAGGATCACTCACCTGTTCAATAGTTCAACACATGCTTAATCGTCATATCACTCAATATGGTATTCTTTCTATATTGCTCTTTCAGAGAACATTTGTTGGGGTTGATTTTTTTAGTGTATTTCAAGAGGTTTATCTTCAAACAAATGATCCACGCGTAACCAATATTGTGTCATTTTCTGATGCCATCGGTGAGCTCAAAGTTGAGGTAATACTAAGTAACTACAATTGGAGTTATCATAAATTTAATACACACTTCTGCTTTAAACTCTACTTCATTTTTTTTTTTTTTTGTAATACTATGCGAGACAGACTGAAACTAGTAAGTTTTTTAGTTTAAGAGGCTTAGTCAATATTGTGAAATGAATTATGCCACATAATTCTAAGGTTGGCTACCTCTTCAAAAATTTGTTAATAGTATTGTTAAAAATTACAGCGAATTTACTTGCTATGTGCTTCTAAAGAATCAAGAGTTAATATAGATAGCTTTCTGGCTTTCTTCGTGTCTATCAGGATAGTTGAATTCCCGTTTGTGTTTGTGCTTGTCATACAAAAAACCATTATATCATATAGCTGTTCATATATTTTACTATTTTATTCTCTGATCTTTTGAGACTTTGGTTTTTTGATAGAGTGAATTGATGTTGTTTGATCTATATGTCTGACCCTATCTCGTGGGACAAAGACTTCATTATTGCTCTCGCTCTTGTTCTTATACTCATGTCCTTCAATTTAAACAGGCAGCAGCATCCATTGGAGATGGAAAAAGAATCCTTTTTAGGTTTGACAGAGCTGCCTTTTCTTTCAAATTTCTTCCATTTAAAGTTCCATATCCAGTTCCATTTAAGCTACTCGGAGATGAAGCAAAGGGTTGGTTAGACACCACATACTTGTCGCATTCAGGAAACCTTCGTATCTCGAGAGGGAATAAGGTGATTAGGCATTTCCAATATAAACATCGTCATAATATATAGTCTTTTGTTCCTCCCCTCAATTAAAATGCTAGTTCGTCTAGCACATCAAATCGAAGCATTTTTATAAAAACAATGTTTCCAAGACTTAACAGCAACATATATATAGTGCAGGGAACCACATTTGTGCTGCAGAAGCAAACTGAACCTAGACAAAAGTTATTAACAGCAATTTCATCGGGGGTGGGTGTTCGAGAGGTAAGGGTGCTGGTTTTTTTTTTCAATAAACATAACTGGAATATTTCCATTGTCGCTATTTTTCACATCCTTAATTCCAACAGGCAATAGATAAACTCATTTCCTTAAATAAGAATTCTGGGGAAGAAGATCCAGAACTAGAAGAGGGCGAGTGGCAGATGATATGGAATTCACAGGTAGAGATTTTGAAATACAAACTAAAAGTTCCAACTAATAATTTTGTTTTTCTCATTTGAAGTTAATTTTTTTAGGGAGTACTGTTTGAAGATGATTTAAATGTAAACAATTATCTTACAAGGTTTTATTTTTCTTATGTAAACAACTTATTCTCTTTAGACTGTGACGGATAGTTGGTTAGAGAATGCTGCCAATGGTCTGATGGGAAAGCAGGTATCAAGTTCATCTTGTGCATTTAATTTAATTGCCACAAGTTCTGCCTCACGTTTACAGTTTGTGTATTACAATGAGTGTTACAGATTGTTGGGAAGAATGGACAAATAAAGTACGTGGTTAATATCTTGCTTGGGCTGAAGTTCTCCATGTCTGGAATTTTTGTGTAAGTTTCCATTGTTTAAAGTTTGCTAATGTTCAGGGGAGGGTCCTTACAAACACAATAAATATGAAGGAATGTAGACAATGAAGATAGGAATCTCTGAATTTTGAGAGTAAGAGAGAGAGAGAGAGAGAGGGTAGAAGTAATAACTGGAACCTGGGTTAGCATGTTAGGAAAGACTTCATATATTATACGAATGCTTTATGGTTATTAACGCCTTTCAGCAAGGACTCTTTTCTGTCTGCATGTCCTTGAAGTGGAGATGTAACGTAGGGGATTTCATGTTGGAATGTGATAAAGCTGGAACTTGATTCAATCAGAATGGGTTGCCTTCTATAAGTGGTTAAGACTAGACTTTTACTAGGTGTGCAGCTTAAATATTTTAGAGCATGGTTAAGGTTATAAAGTATAGGTTATAAAACAAAGTTGGTTTTCCTTCAAATCAATTACCATTTTCCCTGCGTGAAAATGAAAACTTTTAATAGTCATCACTAGATTATCAGGGATAAGGGGTCAGCGATTTTAGTTTTAGACATTAACAGAGATGAACTGAATATTTTTTACTTGACAGAAAAAGTAGGCCCAAAGTGTACGAGGTTACAATGGATGATGCAGCCATAATTGGTGGCCCATTTGGATATCCCCTGGAATTTGGCAAGAAGTTCATCTTGGAGATTCTGTAA

Protein sequence

>MS.gene90788.t1

MALTLRVVNAIERAIQVLERIGGVSDPTNSSLIEGRWQLIFTTRPGTASPIQRTFVGVDFFSVFQEVYLQTNDPRVTNIVSFSDAIGELKVEAAASIGDGKRILFRFDRAAFSFKFLPFKVPYPVPFKLLGDEAKGWLDTTYLSHSGNLRISRGNKGTTFVLQKQTEPRQKLLTAISSGVGVREAIDKLISLNKNSGEEDPELEEGEWQMIWNSQTVTDSWLENAANGLMGKQIVGKNGQIKYVVNILLGLKFSMSGIFVKSRPKVYEVTMDDAAIIGGPFGYPLEFGKKFILEIL