Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49257.t1 | XP_003606932.1 | 87.8 | 360 | 27 | 2 | 1 | 359 | 1 | 344 | 3.00E-168 | 601.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49257.t1 | Q9CAA9 | 48.8 | 215 | 76 | 4 | 152 | 358 | 297 | 485 | 1.1e-41 | 172.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49257.t1 | G7JHB9 | 87.8 | 360 | 27 | 2 | 1 | 359 | 1 | 344 | 2.1e-168 | 601.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene49257.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene49257 | 0.801944 | 7.09E-49 | -1.69E-46 |
| MS.gene049217 | MS.gene49257 | 0.848196 | 7.15E-60 | -1.69E-46 |
| MS.gene049222 | MS.gene49257 | 0.819612 | 1.06E-52 | -1.69E-46 |
| MS.gene049285 | MS.gene49257 | 0.815474 | 9.07E-52 | -1.69E-46 |
| MS.gene049320 | MS.gene49257 | 0.823752 | 1.17E-53 | -1.69E-46 |
| MS.gene049351 | MS.gene49257 | 0.810421 | 1.16E-50 | -1.69E-46 |
| MS.gene049369 | MS.gene49257 | 0.808617 | 2.84E-50 | -1.69E-46 |
| MS.gene049425 | MS.gene49257 | -0.803597 | 3.23E-49 | -1.69E-46 |
| MS.gene049427 | MS.gene49257 | 0.857997 | 1.11E-62 | -1.69E-46 |
| MS.gene049491 | MS.gene49257 | 0.833686 | 4.62E-56 | -1.69E-46 |
| MS.gene049609 | MS.gene49257 | 0.804206 | 2.41E-49 | -1.69E-46 |
| MS.gene049614 | MS.gene49257 | 0.835573 | 1.55E-56 | -1.69E-46 |
| MS.gene049661 | MS.gene49257 | 0.843755 | 1.15E-58 | -1.69E-46 |
| MS.gene049662 | MS.gene49257 | 0.835408 | 1.71E-56 | -1.69E-46 |
| MS.gene049760 | MS.gene49257 | 0.827079 | 1.91E-54 | -1.69E-46 |
| MS.gene049805 | MS.gene49257 | 0.847237 | 1.31E-59 | -1.69E-46 |
| MS.gene049828 | MS.gene49257 | 0.83341 | 5.42E-56 | -1.69E-46 |
| MS.gene050076 | MS.gene49257 | 0.871093 | 8.89E-67 | -1.69E-46 |
| MS.gene050163 | MS.gene49257 | 0.836346 | 9.88E-57 | -1.69E-46 |
| MS.gene050165 | MS.gene49257 | 0.820103 | 8.19E-53 | -1.69E-46 |
| MS.gene050333 | MS.gene49257 | 0.824887 | 6.33E-54 | -1.69E-46 |
| MS.gene050353 | MS.gene49257 | -0.803448 | 3.47E-49 | -1.69E-46 |
| MS.gene050397 | MS.gene49257 | 0.80796 | 3.92E-50 | -1.69E-46 |
| MS.gene050432 | MS.gene49257 | 0.861285 | 1.14E-63 | -1.69E-46 |
| MS.gene05053 | MS.gene49257 | 0.82064 | 6.16E-53 | -1.69E-46 |
| MS.gene050593 | MS.gene49257 | 0.813772 | 2.16E-51 | -1.69E-46 |
| MS.gene050686 | MS.gene49257 | 0.803446 | 3.47E-49 | -1.69E-46 |
| MS.gene050767 | MS.gene49257 | 0.895286 | 1.11E-75 | -1.69E-46 |
| MS.gene050770 | MS.gene49257 | 0.898134 | 7.14E-77 | -1.69E-46 |
| MS.gene050772 | MS.gene49257 | 0.841432 | 4.77E-58 | -1.69E-46 |
| MS.gene05100 | MS.gene49257 | 0.825727 | 4.00E-54 | -1.69E-46 |
| MS.gene05101 | MS.gene49257 | 0.845763 | 3.32E-59 | -1.69E-46 |
| MS.gene05105 | MS.gene49257 | 0.825335 | 4.96E-54 | -1.69E-46 |
| MS.gene051228 | MS.gene49257 | 0.874661 | 5.67E-68 | -1.69E-46 |
| MS.gene051387 | MS.gene49257 | 0.805188 | 1.51E-49 | -1.69E-46 |
| MS.gene051471 | MS.gene49257 | 0.810436 | 1.15E-50 | -1.69E-46 |
| MS.gene051666 | MS.gene49257 | 0.857288 | 1.81E-62 | -1.69E-46 |
| MS.gene051692 | MS.gene49257 | 0.823645 | 1.24E-53 | -1.69E-46 |
| MS.gene051694 | MS.gene49257 | 0.811673 | 6.22E-51 | -1.69E-46 |
| MS.gene051810 | MS.gene49257 | 0.828558 | 8.41E-55 | -1.69E-46 |
| MS.gene051858 | MS.gene49257 | 0.831373 | 1.73E-55 | -1.69E-46 |
| MS.gene051877 | MS.gene49257 | 0.815028 | 1.14E-51 | -1.69E-46 |
| MS.gene051949 | MS.gene49257 | 0.803574 | 3.27E-49 | -1.69E-46 |
| MS.gene052078 | MS.gene49257 | 0.829652 | 4.57E-55 | -1.69E-46 |
| MS.gene052271 | MS.gene49257 | 0.878081 | 3.75E-69 | -1.69E-46 |
| MS.gene052290 | MS.gene49257 | 0.885037 | 1.15E-71 | -1.69E-46 |
| MS.gene052293 | MS.gene49257 | 0.82065 | 6.13E-53 | -1.69E-46 |
| MS.gene052310 | MS.gene49257 | 0.839573 | 1.46E-57 | -1.69E-46 |
| MS.gene052326 | MS.gene49257 | 0.853826 | 1.85E-61 | -1.69E-46 |
| MS.gene052379 | MS.gene49257 | 0.879858 | 8.84E-70 | -1.69E-46 |
| MS.gene052421 | MS.gene49257 | 0.811628 | 6.37E-51 | -1.69E-46 |
| MS.gene052484 | MS.gene49257 | 0.836457 | 9.25E-57 | -1.69E-46 |
| MS.gene053009 | MS.gene49257 | 0.859566 | 3.79E-63 | -1.69E-46 |
| MS.gene053103 | MS.gene49257 | 0.869944 | 2.12E-66 | -1.69E-46 |
| MS.gene053104 | MS.gene49257 | 0.886698 | 2.73E-72 | -1.69E-46 |
| MS.gene053207 | MS.gene49257 | 0.811355 | 7.30E-51 | -1.69E-46 |
| MS.gene053209 | MS.gene49257 | 0.817547 | 3.12E-52 | -1.69E-46 |
| MS.gene053213 | MS.gene49257 | 0.840618 | 7.80E-58 | -1.69E-46 |
| MS.gene053286 | MS.gene49257 | 0.831252 | 1.86E-55 | -1.69E-46 |
| MS.gene053322 | MS.gene49257 | 0.914443 | 1.91E-84 | -1.69E-46 |
| MS.gene053384 | MS.gene49257 | 0.845629 | 3.60E-59 | -1.69E-46 |
| MS.gene053632 | MS.gene49257 | 0.836343 | 9.89E-57 | -1.69E-46 |
| MS.gene053813 | MS.gene49257 | 0.831871 | 1.31E-55 | -1.69E-46 |
| MS.gene053916 | MS.gene49257 | 0.818798 | 1.62E-52 | -1.69E-46 |
| MS.gene054123 | MS.gene49257 | 0.805756 | 1.14E-49 | -1.69E-46 |
| MS.gene054376 | MS.gene49257 | 0.880328 | 6.01E-70 | -1.69E-46 |
| MS.gene054543 | MS.gene49257 | 0.824316 | 8.62E-54 | -1.69E-46 |
| MS.gene054600 | MS.gene49257 | 0.801517 | 8.68E-49 | -1.69E-46 |
| MS.gene054642 | MS.gene49257 | 0.861908 | 7.37E-64 | -1.69E-46 |
| MS.gene054802 | MS.gene49257 | 0.87614 | 1.77E-68 | -1.69E-46 |
| MS.gene054803 | MS.gene49257 | 0.870432 | 1.47E-66 | -1.69E-46 |
| MS.gene054804 | MS.gene49257 | 0.876091 | 1.84E-68 | -1.69E-46 |
| MS.gene054955 | MS.gene49257 | 0.824091 | 9.74E-54 | -1.69E-46 |
| MS.gene05505 | MS.gene49257 | 0.845395 | 4.17E-59 | -1.69E-46 |
| MS.gene055206 | MS.gene49257 | 0.824639 | 7.24E-54 | -1.69E-46 |
| MS.gene055212 | MS.gene49257 | 0.828829 | 7.23E-55 | -1.69E-46 |
| MS.gene055254 | MS.gene49257 | 0.881819 | 1.75E-70 | -1.69E-46 |
| MS.gene055277 | MS.gene49257 | 0.851714 | 7.41E-61 | -1.69E-46 |
| MS.gene055362 | MS.gene49257 | 0.80175 | 7.77E-49 | -1.69E-46 |
| MS.gene055397 | MS.gene49257 | 0.900589 | 6.30E-78 | -1.69E-46 |
| MS.gene055412 | MS.gene49257 | 0.806416 | 8.31E-50 | -1.69E-46 |
| MS.gene055422 | MS.gene49257 | 0.802683 | 4.99E-49 | -1.69E-46 |
| MS.gene055499 | MS.gene49257 | 0.889222 | 2.94E-73 | -1.69E-46 |
| MS.gene055636 | MS.gene49257 | 0.845777 | 3.29E-59 | -1.69E-46 |
| MS.gene055638 | MS.gene49257 | 0.835917 | 1.27E-56 | -1.69E-46 |
| MS.gene055647 | MS.gene49257 | 0.856639 | 2.81E-62 | -1.69E-46 |
| MS.gene055722 | MS.gene49257 | 0.841514 | 4.54E-58 | -1.69E-46 |
| MS.gene055896 | MS.gene49257 | 0.836994 | 6.75E-57 | -1.69E-46 |
| MS.gene05592 | MS.gene49257 | 0.879161 | 1.56E-69 | -1.69E-46 |
| MS.gene055941 | MS.gene49257 | 0.806285 | 8.86E-50 | -1.69E-46 |
| MS.gene055956 | MS.gene49257 | -0.807629 | 4.60E-50 | -1.69E-46 |
| MS.gene056083 | MS.gene49257 | 0.827504 | 1.51E-54 | -1.69E-46 |
| MS.gene056191 | MS.gene49257 | 0.812095 | 5.04E-51 | -1.69E-46 |
| MS.gene056374 | MS.gene49257 | 0.849855 | 2.47E-60 | -1.69E-46 |
| MS.gene056410 | MS.gene49257 | 0.864046 | 1.61E-64 | -1.69E-46 |
| MS.gene056511 | MS.gene49257 | 0.80485 | 1.77E-49 | -1.69E-46 |
| MS.gene056549 | MS.gene49257 | 0.802305 | 5.97E-49 | -1.69E-46 |
| MS.gene056609 | MS.gene49257 | 0.862126 | 6.32E-64 | -1.69E-46 |
| MS.gene056657 | MS.gene49257 | 0.833347 | 5.62E-56 | -1.69E-46 |
| MS.gene056897 | MS.gene49257 | 0.809886 | 1.52E-50 | -1.69E-46 |
| MS.gene057011 | MS.gene49257 | 0.846712 | 1.83E-59 | -1.69E-46 |
| MS.gene057123 | MS.gene49257 | 0.851633 | 7.82E-61 | -1.69E-46 |
| MS.gene057129 | MS.gene49257 | 0.901095 | 3.79E-78 | -1.69E-46 |
| MS.gene057146 | MS.gene49257 | 0.865771 | 4.64E-65 | -1.69E-46 |
| MS.gene057246 | MS.gene49257 | 0.81712 | 3.89E-52 | -1.69E-46 |
| MS.gene057285 | MS.gene49257 | 0.817504 | 3.19E-52 | -1.69E-46 |
| MS.gene057295 | MS.gene49257 | 0.862074 | 6.56E-64 | -1.69E-46 |
| MS.gene057331 | MS.gene49257 | 0.830406 | 2.99E-55 | -1.69E-46 |
| MS.gene05735 | MS.gene49257 | 0.829084 | 6.27E-55 | -1.69E-46 |
| MS.gene057416 | MS.gene49257 | 0.857738 | 1.33E-62 | -1.69E-46 |
| MS.gene057926 | MS.gene49257 | 0.834459 | 2.96E-56 | -1.69E-46 |
| MS.gene058006 | MS.gene49257 | 0.815706 | 8.06E-52 | -1.69E-46 |
| MS.gene058019 | MS.gene49257 | 0.830878 | 2.29E-55 | -1.69E-46 |
| MS.gene058082 | MS.gene49257 | 0.816852 | 4.47E-52 | -1.69E-46 |
| MS.gene058293 | MS.gene49257 | 0.857662 | 1.40E-62 | -1.69E-46 |
| MS.gene058323 | MS.gene49257 | 0.829816 | 4.17E-55 | -1.69E-46 |
| MS.gene058419 | MS.gene49257 | 0.82942 | 5.20E-55 | -1.69E-46 |
| MS.gene058660 | MS.gene49257 | 0.879007 | 1.77E-69 | -1.69E-46 |
| MS.gene058723 | MS.gene49257 | 0.829402 | 5.25E-55 | -1.69E-46 |
| MS.gene058773 | MS.gene49257 | 0.81318 | 2.92E-51 | -1.69E-46 |
| MS.gene058840 | MS.gene49257 | -0.808157 | 3.56E-50 | -1.69E-46 |
| MS.gene058903 | MS.gene49257 | 0.815863 | 7.43E-52 | -1.69E-46 |
| MS.gene058928 | MS.gene49257 | 0.812161 | 4.87E-51 | -1.69E-46 |
| MS.gene059029 | MS.gene49257 | 0.849363 | 3.39E-60 | -1.69E-46 |
| MS.gene05913 | MS.gene49257 | 0.802221 | 6.22E-49 | -1.69E-46 |
| MS.gene059326 | MS.gene49257 | 0.82176 | 3.40E-53 | -1.69E-46 |
| MS.gene05934 | MS.gene49257 | 0.825257 | 5.17E-54 | -1.69E-46 |
| MS.gene059536 | MS.gene49257 | 0.890224 | 1.19E-73 | -1.69E-46 |
| MS.gene059597 | MS.gene49257 | 0.818088 | 2.35E-52 | -1.69E-46 |
| MS.gene059676 | MS.gene49257 | 0.842198 | 2.99E-58 | -1.69E-46 |
| MS.gene059677 | MS.gene49257 | 0.814546 | 1.46E-51 | -1.69E-46 |
| MS.gene059688 | MS.gene49257 | 0.838102 | 3.51E-57 | -1.69E-46 |
| MS.gene059692 | MS.gene49257 | 0.844471 | 7.41E-59 | -1.69E-46 |
| MS.gene059695 | MS.gene49257 | 0.838134 | 3.44E-57 | -1.69E-46 |
| MS.gene059708 | MS.gene49257 | 0.81179 | 5.87E-51 | -1.69E-46 |
| MS.gene059711 | MS.gene49257 | 0.835122 | 2.02E-56 | -1.69E-46 |
| MS.gene059718 | MS.gene49257 | 0.811179 | 7.97E-51 | -1.69E-46 |
| MS.gene059858 | MS.gene49257 | 0.809586 | 1.76E-50 | -1.69E-46 |
| MS.gene059894 | MS.gene49257 | 0.80907 | 2.27E-50 | -1.69E-46 |
| MS.gene059902 | MS.gene49257 | 0.831803 | 1.36E-55 | -1.69E-46 |
| MS.gene059960 | MS.gene49257 | 0.901117 | 3.70E-78 | -1.69E-46 |
| MS.gene060005 | MS.gene49257 | 0.802793 | 4.74E-49 | -1.69E-46 |
| MS.gene060193 | MS.gene49257 | 0.831427 | 1.68E-55 | -1.69E-46 |
| MS.gene06037 | MS.gene49257 | 0.800091 | 1.70E-48 | -1.69E-46 |
| MS.gene060804 | MS.gene49257 | 0.887764 | 1.07E-72 | -1.69E-46 |
| MS.gene060818 | MS.gene49257 | 0.888976 | 3.66E-73 | -1.69E-46 |
| MS.gene060837 | MS.gene49257 | 0.803327 | 3.68E-49 | -1.69E-46 |
| MS.gene06092 | MS.gene49257 | 0.800632 | 1.32E-48 | -1.69E-46 |
| MS.gene061041 | MS.gene49257 | 0.863181 | 2.99E-64 | -1.69E-46 |
| MS.gene061051 | MS.gene49257 | -0.839448 | 1.58E-57 | -1.69E-46 |
| MS.gene061134 | MS.gene49257 | 0.812267 | 4.62E-51 | -1.69E-46 |
| MS.gene061150 | MS.gene49257 | 0.803782 | 2.96E-49 | -1.69E-46 |
| MS.gene061200 | MS.gene49257 | 0.91118 | 8.14E-83 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49257.t1 | MTR_4g070320 | 90.833 | 360 | 16 | 2 | 1 | 359 | 1 | 344 | 0.0 | 667 |
| MS.gene49257.t1 | MTR_3g116770 | 53.589 | 418 | 114 | 17 | 1 | 359 | 1 | 397 | 9.51e-125 | 364 |
| MS.gene49257.t1 | MTR_3g116770 | 53.461 | 419 | 114 | 18 | 1 | 359 | 1 | 398 | 4.90e-123 | 360 |
| MS.gene49257.t1 | MTR_7g053410 | 51.691 | 207 | 84 | 6 | 69 | 261 | 220 | 424 | 7.52e-53 | 182 |
| MS.gene49257.t1 | MTR_7g053410 | 51.691 | 207 | 84 | 6 | 69 | 261 | 220 | 424 | 1.54e-52 | 182 |
| MS.gene49257.t1 | MTR_5g048860 | 46.332 | 259 | 102 | 13 | 119 | 359 | 319 | 558 | 3.60e-49 | 174 |
| MS.gene49257.t1 | MTR_8g065740 | 54.088 | 159 | 68 | 3 | 88 | 245 | 238 | 392 | 4.51e-46 | 163 |
| MS.gene49257.t1 | MTR_8g012290 | 60.000 | 145 | 52 | 3 | 106 | 248 | 242 | 382 | 4.55e-46 | 164 |
| MS.gene49257.t1 | MTR_8g012290 | 60.000 | 145 | 52 | 3 | 106 | 248 | 242 | 382 | 5.02e-46 | 164 |
| MS.gene49257.t1 | MTR_1g017350 | 45.972 | 211 | 72 | 6 | 138 | 334 | 226 | 408 | 6.13e-45 | 159 |
| MS.gene49257.t1 | MTR_1g017350 | 45.972 | 211 | 72 | 6 | 138 | 334 | 226 | 408 | 8.24e-45 | 159 |
| MS.gene49257.t1 | MTR_1g017350 | 65.833 | 120 | 27 | 2 | 138 | 243 | 226 | 345 | 4.89e-44 | 157 |
| MS.gene49257.t1 | MTR_1g017350 | 65.833 | 120 | 27 | 2 | 138 | 243 | 226 | 345 | 5.79e-44 | 157 |
| MS.gene49257.t1 | MTR_8g062240 | 75.258 | 97 | 24 | 0 | 155 | 251 | 148 | 244 | 4.90e-43 | 150 |
| MS.gene49257.t1 | MTR_5g037250 | 59.701 | 134 | 42 | 2 | 114 | 247 | 79 | 200 | 1.24e-42 | 148 |
| MS.gene49257.t1 | MTR_7g092510 | 74.194 | 93 | 24 | 0 | 151 | 243 | 166 | 258 | 8.51e-42 | 149 |
| MS.gene49257.t1 | MTR_1g059270 | 62.712 | 118 | 35 | 3 | 137 | 250 | 143 | 255 | 3.07e-41 | 147 |
| MS.gene49257.t1 | MTR_1g059270 | 64.545 | 110 | 33 | 2 | 137 | 245 | 143 | 247 | 3.64e-41 | 145 |
| MS.gene49257.t1 | MTR_8g099880 | 82.143 | 84 | 14 | 1 | 155 | 237 | 142 | 225 | 1.42e-39 | 143 |
| MS.gene49257.t1 | MTR_3g498825 | 75.000 | 92 | 20 | 1 | 155 | 243 | 144 | 235 | 2.70e-39 | 142 |
| MS.gene49257.t1 | MTR_6g084120 | 55.556 | 99 | 34 | 2 | 138 | 235 | 134 | 223 | 3.01e-25 | 103 |
| MS.gene49257.t1 | MTR_4g131160 | 71.212 | 66 | 18 | 1 | 158 | 223 | 196 | 260 | 1.35e-21 | 95.5 |
| MS.gene49257.t1 | MTR_4g131160 | 71.212 | 66 | 18 | 1 | 158 | 223 | 199 | 263 | 1.40e-21 | 95.5 |
| MS.gene49257.t1 | MTR_1g080890 | 68.182 | 66 | 20 | 1 | 158 | 223 | 193 | 257 | 2.12e-20 | 91.3 |
| MS.gene49257.t1 | MTR_4g065870 | 56.923 | 65 | 28 | 0 | 158 | 222 | 355 | 419 | 5.85e-15 | 76.3 |
| MS.gene49257.t1 | MTR_2g098310 | 52.239 | 67 | 32 | 0 | 156 | 222 | 330 | 396 | 1.04e-14 | 75.1 |
| MS.gene49257.t1 | MTR_1g069155 | 52.174 | 69 | 32 | 1 | 160 | 228 | 319 | 386 | 1.04e-14 | 75.5 |
| MS.gene49257.t1 | MTR_4g033295 | 53.846 | 65 | 30 | 0 | 158 | 222 | 118 | 182 | 1.85e-14 | 71.6 |
| MS.gene49257.t1 | MTR_2g098310 | 53.030 | 66 | 31 | 0 | 156 | 221 | 330 | 395 | 2.56e-14 | 73.9 |
| MS.gene49257.t1 | MTR_4g033295 | 52.239 | 67 | 31 | 1 | 158 | 223 | 118 | 184 | 3.23e-14 | 70.9 |
| MS.gene49257.t1 | MTR_1g084980 | 45.205 | 73 | 39 | 1 | 160 | 232 | 464 | 535 | 3.37e-14 | 74.3 |
| MS.gene49257.t1 | MTR_4g065870 | 56.452 | 62 | 27 | 0 | 158 | 219 | 355 | 416 | 3.55e-14 | 73.6 |
| MS.gene49257.t1 | MTR_1g052470 | 48.718 | 78 | 38 | 1 | 151 | 226 | 289 | 366 | 3.62e-14 | 73.6 |
| MS.gene49257.t1 | MTR_1g018090 | 45.455 | 88 | 43 | 2 | 135 | 222 | 255 | 337 | 1.03e-13 | 72.0 |
| MS.gene49257.t1 | MTR_7g092540 | 45.783 | 83 | 43 | 1 | 151 | 231 | 234 | 316 | 1.09e-13 | 71.6 |
| MS.gene49257.t1 | MTR_1g070870 | 63.636 | 66 | 23 | 1 | 158 | 223 | 120 | 184 | 1.19e-13 | 70.9 |
| MS.gene49257.t1 | MTR_1g070870 | 63.636 | 66 | 23 | 1 | 158 | 223 | 123 | 187 | 1.30e-13 | 70.9 |
| MS.gene49257.t1 | MTR_7g099540 | 37.984 | 129 | 59 | 5 | 108 | 228 | 206 | 321 | 3.31e-13 | 70.9 |
| MS.gene49257.t1 | MTR_7g092540 | 47.945 | 73 | 36 | 1 | 151 | 221 | 234 | 306 | 6.71e-13 | 68.9 |
| MS.gene49257.t1 | MTR_1g019240 | 40.909 | 88 | 50 | 2 | 138 | 224 | 64 | 150 | 1.78e-12 | 67.4 |
| MS.gene49257.t1 | MTR_3g028520 | 49.231 | 65 | 33 | 0 | 158 | 222 | 322 | 386 | 3.56e-12 | 67.4 |
| MS.gene49257.t1 | MTR_3g027650 | 49.231 | 65 | 33 | 0 | 158 | 222 | 322 | 386 | 3.56e-12 | 67.4 |
| MS.gene49257.t1 | MTR_7g111320 | 34.706 | 170 | 99 | 7 | 124 | 286 | 396 | 560 | 4.56e-12 | 67.8 |
| MS.gene49257.t1 | MTR_8g036235 | 47.692 | 65 | 34 | 0 | 158 | 222 | 316 | 380 | 6.88e-12 | 66.6 |
| MS.gene49257.t1 | MTR_7g099540 | 37.097 | 124 | 57 | 5 | 108 | 223 | 206 | 316 | 1.62e-11 | 65.9 |
| MS.gene49257.t1 | MTR_3g027650 | 50.000 | 62 | 31 | 0 | 158 | 219 | 322 | 383 | 1.75e-11 | 65.5 |
| MS.gene49257.t1 | MTR_3g449770 | 36.893 | 103 | 60 | 3 | 160 | 259 | 311 | 411 | 3.07e-11 | 65.1 |
| MS.gene49257.t1 | MTR_5g005110 | 34.146 | 123 | 63 | 3 | 100 | 222 | 183 | 287 | 4.58e-11 | 63.5 |
| MS.gene49257.t1 | MTR_3g103030 | 51.562 | 64 | 30 | 1 | 159 | 222 | 230 | 292 | 5.63e-11 | 63.5 |
| MS.gene49257.t1 | MTR_7g110810 | 43.939 | 66 | 36 | 1 | 169 | 234 | 213 | 277 | 6.84e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49257.t1 | AT4G34530 | 39.118 | 363 | 139 | 11 | 12 | 329 | 5 | 330 | 3.95e-59 | 194 |
| MS.gene49257.t1 | AT2G18300 | 59.627 | 161 | 55 | 5 | 89 | 248 | 124 | 275 | 3.70e-52 | 176 |
| MS.gene49257.t1 | AT2G18300 | 60.897 | 156 | 51 | 5 | 89 | 243 | 124 | 270 | 3.55e-51 | 174 |
| MS.gene49257.t1 | AT1G68920 | 39.869 | 306 | 136 | 8 | 75 | 358 | 205 | 484 | 4.81e-51 | 177 |
| MS.gene49257.t1 | AT1G68920 | 41.297 | 293 | 124 | 7 | 79 | 358 | 228 | 485 | 6.36e-51 | 177 |
| MS.gene49257.t1 | AT1G68920 | 41.297 | 293 | 124 | 7 | 79 | 358 | 228 | 485 | 6.36e-51 | 177 |
| MS.gene49257.t1 | AT1G68920 | 41.297 | 293 | 124 | 7 | 79 | 358 | 228 | 485 | 6.36e-51 | 177 |
| MS.gene49257.t1 | AT2G18300 | 60.897 | 156 | 51 | 5 | 89 | 243 | 124 | 270 | 1.01e-50 | 173 |
| MS.gene49257.t1 | AT3G07340 | 53.093 | 194 | 70 | 4 | 78 | 271 | 195 | 367 | 1.70e-50 | 174 |
| MS.gene49257.t1 | AT3G07340 | 53.093 | 194 | 70 | 4 | 78 | 271 | 195 | 367 | 1.84e-50 | 175 |
| MS.gene49257.t1 | AT3G23690 | 56.742 | 178 | 67 | 4 | 106 | 281 | 140 | 309 | 4.23e-49 | 169 |
| MS.gene49257.t1 | AT1G26260 | 57.325 | 157 | 56 | 1 | 101 | 257 | 126 | 271 | 1.52e-48 | 167 |
| MS.gene49257.t1 | AT5G48560 | 49.495 | 198 | 94 | 3 | 54 | 245 | 192 | 389 | 2.43e-48 | 169 |
| MS.gene49257.t1 | AT1G26260 | 57.325 | 157 | 56 | 1 | 101 | 257 | 155 | 300 | 4.33e-48 | 167 |
| MS.gene49257.t1 | AT5G48560 | 49.495 | 198 | 94 | 3 | 54 | 245 | 192 | 389 | 4.96e-48 | 169 |
| MS.gene49257.t1 | AT1G26260 | 57.325 | 157 | 56 | 1 | 101 | 257 | 177 | 322 | 7.00e-48 | 166 |
| MS.gene49257.t1 | AT1G26260 | 57.325 | 157 | 56 | 1 | 101 | 257 | 177 | 322 | 7.00e-48 | 166 |
| MS.gene49257.t1 | AT1G26260 | 57.325 | 157 | 56 | 1 | 101 | 257 | 177 | 322 | 7.00e-48 | 166 |
| MS.gene49257.t1 | AT1G26260 | 57.325 | 157 | 56 | 1 | 101 | 257 | 177 | 322 | 7.00e-48 | 166 |
| MS.gene49257.t1 | AT4G36540 | 53.254 | 169 | 58 | 4 | 89 | 257 | 93 | 240 | 1.73e-47 | 163 |
| MS.gene49257.t1 | AT4G36540 | 56.129 | 155 | 47 | 4 | 89 | 243 | 93 | 226 | 1.41e-46 | 160 |
| MS.gene49257.t1 | AT1G10120 | 46.544 | 217 | 78 | 5 | 123 | 339 | 174 | 352 | 4.67e-46 | 161 |
| MS.gene49257.t1 | AT1G10120 | 46.544 | 217 | 78 | 5 | 123 | 339 | 174 | 352 | 4.67e-46 | 161 |
| MS.gene49257.t1 | AT1G59640 | 63.636 | 132 | 41 | 2 | 124 | 249 | 97 | 227 | 6.80e-45 | 155 |
| MS.gene49257.t1 | AT2G42300 | 71.134 | 97 | 28 | 0 | 148 | 244 | 175 | 271 | 1.07e-43 | 152 |
| MS.gene49257.t1 | AT1G59640 | 65.354 | 127 | 37 | 2 | 124 | 244 | 97 | 222 | 2.90e-43 | 153 |
| MS.gene49257.t1 | AT3G57800 | 63.415 | 123 | 40 | 2 | 149 | 271 | 195 | 312 | 3.50e-43 | 154 |
| MS.gene49257.t1 | AT5G50915 | 54.777 | 157 | 53 | 6 | 109 | 259 | 85 | 229 | 6.09e-43 | 150 |
| MS.gene49257.t1 | AT5G50915 | 54.777 | 157 | 53 | 6 | 109 | 259 | 85 | 229 | 6.09e-43 | 150 |
| MS.gene49257.t1 | AT5G50915 | 54.777 | 157 | 53 | 6 | 109 | 259 | 85 | 229 | 2.36e-42 | 149 |
| MS.gene49257.t1 | AT5G50915 | 54.777 | 157 | 53 | 6 | 109 | 259 | 85 | 229 | 2.36e-42 | 149 |
| MS.gene49257.t1 | AT2G42300 | 70.833 | 96 | 28 | 0 | 148 | 243 | 175 | 270 | 3.52e-42 | 150 |
| MS.gene49257.t1 | AT5G62610 | 77.647 | 85 | 15 | 1 | 149 | 229 | 140 | 224 | 1.53e-37 | 136 |
| MS.gene49257.t1 | AT5G62610 | 77.647 | 85 | 15 | 1 | 149 | 229 | 140 | 224 | 1.53e-37 | 136 |
| MS.gene49257.t1 | AT1G18400 | 76.250 | 80 | 19 | 0 | 156 | 235 | 143 | 222 | 2.34e-35 | 129 |
| MS.gene49257.t1 | AT1G18400 | 76.250 | 80 | 19 | 0 | 156 | 235 | 143 | 222 | 4.10e-35 | 129 |
| MS.gene49257.t1 | AT1G73830 | 77.215 | 79 | 18 | 0 | 157 | 235 | 146 | 224 | 6.56e-35 | 129 |
| MS.gene49257.t1 | AT1G73830 | 77.215 | 79 | 18 | 0 | 157 | 235 | 146 | 224 | 7.39e-35 | 129 |
| MS.gene49257.t1 | AT3G57800 | 45.882 | 170 | 40 | 3 | 149 | 271 | 195 | 359 | 2.39e-34 | 131 |
| MS.gene49257.t1 | AT1G25330 | 64.286 | 98 | 34 | 1 | 149 | 245 | 94 | 191 | 3.25e-34 | 126 |
| MS.gene49257.t1 | AT5G58010 | 60.000 | 90 | 28 | 3 | 148 | 233 | 92 | 177 | 6.36e-23 | 97.4 |
| MS.gene49257.t1 | AT2G24260 | 56.471 | 85 | 36 | 1 | 139 | 223 | 16 | 99 | 3.23e-22 | 94.7 |
| MS.gene49257.t1 | AT4G30980 | 71.212 | 66 | 18 | 1 | 158 | 223 | 130 | 194 | 8.54e-22 | 94.7 |
| MS.gene49257.t1 | AT4G30980 | 71.212 | 66 | 18 | 1 | 158 | 223 | 178 | 242 | 1.39e-21 | 94.7 |
| MS.gene49257.t1 | AT2G24260 | 56.471 | 85 | 36 | 1 | 139 | 223 | 119 | 202 | 2.22e-21 | 94.4 |
| MS.gene49257.t1 | AT2G42300 | 70.000 | 50 | 15 | 0 | 148 | 197 | 175 | 224 | 3.49e-18 | 82.8 |
| MS.gene49257.t1 | AT2G42300 | 70.000 | 50 | 15 | 0 | 148 | 197 | 175 | 224 | 3.49e-18 | 82.8 |
| MS.gene49257.t1 | AT2G42300 | 70.000 | 50 | 15 | 0 | 148 | 197 | 175 | 224 | 4.47e-18 | 82.8 |
| MS.gene49257.t1 | AT2G20180 | 53.968 | 63 | 28 | 1 | 161 | 223 | 210 | 271 | 2.51e-14 | 73.9 |
| MS.gene49257.t1 | AT2G20180 | 53.968 | 63 | 28 | 1 | 161 | 223 | 210 | 271 | 2.51e-14 | 73.9 |
| MS.gene49257.t1 | AT2G20180 | 53.968 | 63 | 28 | 1 | 161 | 223 | 210 | 271 | 2.51e-14 | 73.9 |
| MS.gene49257.t1 | AT2G20180 | 53.968 | 63 | 28 | 1 | 161 | 223 | 281 | 342 | 2.72e-14 | 74.3 |
| MS.gene49257.t1 | AT2G20180 | 53.968 | 63 | 28 | 1 | 161 | 223 | 281 | 342 | 2.72e-14 | 74.3 |
| MS.gene49257.t1 | AT2G20180 | 53.968 | 63 | 28 | 1 | 161 | 223 | 281 | 342 | 2.72e-14 | 74.3 |
| MS.gene49257.t1 | AT2G20180 | 53.968 | 63 | 28 | 1 | 161 | 223 | 281 | 342 | 2.72e-14 | 74.3 |
| MS.gene49257.t1 | AT1G09530 | 46.479 | 71 | 37 | 1 | 153 | 223 | 332 | 401 | 4.42e-14 | 73.6 |
| MS.gene49257.t1 | AT1G09530 | 46.479 | 71 | 37 | 1 | 153 | 223 | 332 | 401 | 4.42e-14 | 73.6 |
| MS.gene49257.t1 | AT1G09530 | 46.479 | 71 | 37 | 1 | 153 | 223 | 332 | 401 | 4.42e-14 | 73.6 |
| MS.gene49257.t1 | AT1G09530 | 46.479 | 71 | 37 | 1 | 153 | 223 | 332 | 401 | 4.42e-14 | 73.6 |
| MS.gene49257.t1 | AT1G09530 | 46.479 | 71 | 37 | 1 | 153 | 223 | 332 | 401 | 4.42e-14 | 73.6 |
| MS.gene49257.t1 | AT1G09530 | 46.479 | 71 | 37 | 1 | 153 | 223 | 332 | 401 | 4.42e-14 | 73.6 |
| MS.gene49257.t1 | AT4G09180 | 50.746 | 67 | 33 | 0 | 156 | 222 | 182 | 248 | 6.81e-14 | 71.2 |
| MS.gene49257.t1 | AT2G42280 | 37.705 | 122 | 70 | 3 | 102 | 221 | 227 | 344 | 8.66e-14 | 72.0 |
| MS.gene49257.t1 | AT2G42280 | 36.667 | 120 | 72 | 2 | 102 | 221 | 227 | 342 | 8.69e-14 | 72.0 |
| MS.gene49257.t1 | AT4G28790 | 35.043 | 117 | 67 | 3 | 160 | 275 | 273 | 381 | 9.97e-14 | 72.4 |
| MS.gene49257.t1 | AT1G51140 | 54.688 | 64 | 29 | 0 | 158 | 221 | 304 | 367 | 1.18e-13 | 72.0 |
| MS.gene49257.t1 | AT4G02590 | 51.724 | 87 | 33 | 2 | 145 | 223 | 62 | 147 | 1.68e-13 | 70.1 |
| MS.gene49257.t1 | AT4G28800 | 32.667 | 150 | 77 | 5 | 119 | 267 | 224 | 350 | 2.04e-13 | 71.6 |
| MS.gene49257.t1 | AT4G02590 | 51.724 | 87 | 33 | 2 | 145 | 223 | 125 | 210 | 2.68e-13 | 70.1 |
| MS.gene49257.t1 | AT4G02590 | 51.724 | 87 | 33 | 2 | 145 | 223 | 125 | 210 | 2.68e-13 | 70.1 |
| MS.gene49257.t1 | AT1G03040 | 62.121 | 66 | 24 | 1 | 158 | 223 | 139 | 203 | 3.34e-13 | 69.7 |
| MS.gene49257.t1 | AT1G35460 | 50.769 | 65 | 32 | 0 | 158 | 222 | 181 | 245 | 3.37e-13 | 69.3 |
| MS.gene49257.t1 | AT1G03040 | 62.121 | 66 | 24 | 1 | 158 | 223 | 144 | 208 | 3.63e-13 | 69.7 |
| MS.gene49257.t1 | AT4G28815 | 55.172 | 58 | 25 | 1 | 161 | 218 | 71 | 127 | 4.32e-13 | 68.6 |
| MS.gene49257.t1 | AT2G20180 | 52.459 | 61 | 28 | 1 | 160 | 220 | 280 | 339 | 5.18e-13 | 69.7 |
| MS.gene49257.t1 | AT1G03040 | 62.121 | 66 | 24 | 1 | 158 | 223 | 144 | 208 | 6.45e-13 | 69.3 |
| MS.gene49257.t1 | AT4G28815 | 48.571 | 70 | 34 | 2 | 161 | 229 | 147 | 215 | 1.15e-12 | 68.2 |
| MS.gene49257.t1 | AT1G27740 | 38.938 | 113 | 68 | 1 | 110 | 222 | 119 | 230 | 2.22e-12 | 67.0 |
| MS.gene49257.t1 | AT4G28800 | 39.604 | 101 | 46 | 3 | 119 | 219 | 236 | 321 | 1.03e-11 | 66.2 |
| MS.gene49257.t1 | AT2G46970 | 41.250 | 80 | 41 | 2 | 156 | 230 | 216 | 294 | 1.27e-11 | 65.9 |
| MS.gene49257.t1 | AT2G46970 | 41.250 | 80 | 41 | 2 | 156 | 230 | 185 | 263 | 1.35e-11 | 65.9 |
| MS.gene49257.t1 | AT2G46970 | 41.250 | 80 | 41 | 2 | 156 | 230 | 194 | 272 | 1.41e-11 | 65.9 |
| MS.gene49257.t1 | AT2G14760 | 39.655 | 116 | 56 | 4 | 117 | 222 | 189 | 300 | 1.48e-11 | 65.1 |
| MS.gene49257.t1 | AT4G33880 | 43.011 | 93 | 49 | 3 | 133 | 222 | 238 | 329 | 4.52e-11 | 63.9 |
| MS.gene49257.t1 | AT4G00050 | 49.231 | 65 | 32 | 1 | 158 | 222 | 105 | 168 | 7.89e-11 | 62.8 |
Find 63 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGTTTGCTCAGTGATTT+TGG | 0.069577 | 4.3:+35332229 | None:intergenic |
| CACTTTGATCCTCTTGTCTT+TGG | 0.165749 | 4.3:+35332271 | None:intergenic |
| GGGATAGTCCCTCCGGAAAT+TGG | 0.186320 | 4.3:-35330940 | MS.gene49257:CDS |
| TTACATTGTCTTAACACTTC+TGG | 0.231856 | 4.3:-35332566 | MS.gene49257:CDS |
| GACATTTCTGATTGCATCAT+TGG | 0.242720 | 4.3:+35331036 | None:intergenic |
| TTCCTTCGAACCCCAATTTC+CGG | 0.243538 | 4.3:+35330928 | None:intergenic |
| AATTTGTATCTACCTGTAAA+TGG | 0.288243 | 4.3:+35330649 | None:intergenic |
| TTTCCTTCTCAACCATTTAC+AGG | 0.299320 | 4.3:-35330661 | MS.gene49257:intron |
| GATGAGTCAAGAAAGATTTC+AGG | 0.310824 | 4.3:+35330877 | None:intergenic |
| GTTGGTTGTGATTCTGCTCT+TGG | 0.325858 | 4.3:-35332392 | MS.gene49257:CDS |
| GCATTGTGTCCATACCTCTT+TGG | 0.342272 | 4.3:+35331312 | None:intergenic |
| TGGTGGATTGATAAACAATA+TGG | 0.350380 | 4.3:-35330962 | MS.gene49257:CDS |
| GGATAGTCCCTCCGGAAATT+GGG | 0.350458 | 4.3:-35330939 | MS.gene49257:CDS |
| AACAAAATTGCAGGCAAAGC+TGG | 0.365496 | 4.3:-35331593 | MS.gene49257:CDS |
| CAACACTGTCATGTCGGAAA+TGG | 0.383436 | 4.3:+35332526 | None:intergenic |
| CAATGTTGAAGTCAAGTCTT+GGG | 0.403046 | 4.3:+35331347 | None:intergenic |
| CCAGGATGTAACAAAATTGC+AGG | 0.430070 | 4.3:-35331602 | MS.gene49257:CDS |
| TGATGAATTGTTTGCCAAAG+AGG | 0.438799 | 4.3:-35331326 | MS.gene49257:intron |
| GCTCGAACATGAATGTAATC+AGG | 0.466193 | 4.3:+35332113 | None:intergenic |
| TCAATGTTGAAGTCAAGTCT+TGG | 0.479932 | 4.3:+35331346 | None:intergenic |
| GAATTGAATTGAAGATATGC+AGG | 0.482069 | 4.3:+35331009 | None:intergenic |
| ATCAAAGTGAGTGTTGAAGA+AGG | 0.498660 | 4.3:-35332257 | MS.gene49257:CDS |
| TCGAAGAAACCATTAAGAAA+AGG | 0.502237 | 4.3:-35332322 | MS.gene49257:CDS |
| AACACTTCTGGAAATCTAGT+AGG | 0.504501 | 4.3:-35332554 | MS.gene49257:CDS |
| ATATCCTACCATCCTCAACT+TGG | 0.507057 | 4.3:-35330741 | MS.gene49257:CDS |
| AAAATCACCTTCCCAAGTTG+AGG | 0.508180 | 4.3:+35330729 | None:intergenic |
| CAATATGGGGATAGTCCCTC+CGG | 0.510922 | 4.3:-35330947 | MS.gene49257:CDS |
| TATTTGCAAGATTTAGTACC+AGG | 0.510967 | 4.3:-35331620 | MS.gene49257:CDS |
| GGTGGATTGATAAACAATAT+GGG | 0.517497 | 4.3:-35330961 | MS.gene49257:CDS |
| TAACTCTATGAAACCCGACC+CGG | 0.524469 | 4.3:-35332357 | MS.gene49257:CDS |
| TGAAGCTAGCAATCTGAAGA+TGG | 0.529573 | 4.3:-35330327 | MS.gene49257:CDS |
| GTTCGTGTTCATGTTCATGT+TGG | 0.539052 | 4.3:+35332477 | None:intergenic |
| GTCTCTTCAAAGACAAGTTG+AGG | 0.543289 | 4.3:-35331540 | MS.gene49257:intron |
| CAACAACTAGTTTCATGTTG+TGG | 0.545151 | 4.3:-35330982 | MS.gene49257:CDS |
| AGAGAAAATTGTGATGATGT+TGG | 0.545309 | 4.3:-35332179 | MS.gene49257:CDS |
| CTCCGGAAATTGGGGTTCGA+AGG | 0.548238 | 4.3:-35330930 | MS.gene49257:CDS |
| CTACCTGTAAATGGTTGAGA+AGG | 0.549856 | 4.3:+35330658 | None:intergenic |
| CATTTCCGACATGACAGTGT+TGG | 0.552355 | 4.3:-35332525 | MS.gene49257:CDS |
| CTTCCCAAGTTGAGGATGGT+AGG | 0.556292 | 4.3:+35330737 | None:intergenic |
| CAACTAGTTTCATGTTGTGG+TGG | 0.563540 | 4.3:-35330979 | MS.gene49257:CDS |
| AAAATCACTGAGCAAACAAA+GGG | 0.564488 | 4.3:-35332227 | MS.gene49257:CDS |
| GATAGTCCCTCCGGAAATTG+GGG | 0.565816 | 4.3:-35330938 | MS.gene49257:CDS |
| TTGTGATGATGTTGGTTCCA+AGG | 0.568124 | 4.3:-35332171 | MS.gene49257:CDS |
| TCAGGTAAAGATGCAGATGC+CGG | 0.578456 | 4.3:+35330895 | None:intergenic |
| TCGAAGGAACATTAATGCAC+CGG | 0.582886 | 4.3:-35330914 | MS.gene49257:CDS |
| CAAAATCACTGAGCAAACAA+AGG | 0.583100 | 4.3:-35332228 | MS.gene49257:CDS |
| CTACCATCCTCAACTTGGGA+AGG | 0.586675 | 4.3:-35330736 | MS.gene49257:CDS |
| GGTTCCAAGGAAAATTCGAA+AGG | 0.600922 | 4.3:-35332158 | MS.gene49257:CDS |
| TATCCTACCATCCTCAACTT+GGG | 0.602359 | 4.3:-35330740 | MS.gene49257:CDS |
| AATTGAATTGAAGATATGCA+GGG | 0.606589 | 4.3:+35331010 | None:intergenic |
| TCTTTCCAACACTGTCATGT+CGG | 0.609762 | 4.3:+35332520 | None:intergenic |
| ACTTCTGGAAATCTAGTAGG+AGG | 0.609823 | 4.3:-35332551 | MS.gene49257:CDS |
| TCACCTTCCCAAGTTGAGGA+TGG | 0.614865 | 4.3:+35330733 | None:intergenic |
| CTTCGAACCCCAATTTCCGG+AGG | 0.622595 | 4.3:+35330931 | None:intergenic |
| TTCGAACCCCAATTTCCGGA+GGG | 0.626102 | 4.3:+35330932 | None:intergenic |
| TGTTGGAAAGACAAAGAGCA+AGG | 0.628279 | 4.3:-35332508 | MS.gene49257:CDS |
| AACTCTATGAAACCCGACCC+GGG | 0.629719 | 4.3:-35332356 | MS.gene49257:CDS |
| GAAAAGGAAAGCTGATAACA+AGG | 0.638853 | 4.3:-35332306 | MS.gene49257:CDS |
| ATATAAAGTCCAAAGACAAG+AGG | 0.657536 | 4.3:-35332280 | MS.gene49257:CDS |
| ATTCATGTTCGAGCACGTCG+CGG | 0.664373 | 4.3:-35332104 | MS.gene49257:CDS |
| GTGGATTGATAAACAATATG+GGG | 0.684555 | 4.3:-35330960 | MS.gene49257:CDS |
| AAGGAAAGCTGATAACAAGG+TGG | 0.715030 | 4.3:-35332303 | MS.gene49257:CDS |
| CATTTCCCGAAAAGTAACGT+CGG | 0.737392 | 4.3:+35332441 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAGTTTAAGTTTATAATA+TGG | - | chr4.3:35331427-35331446 | MS.gene49257:intron | 10.0% |
| !!! | TTTTACTAAATTGTTTAATT+TGG | - | chr4.3:35331045-35331064 | MS.gene49257:CDS | 10.0% |
| !! | AATCATATTAATGATTGATT+AGG | + | chr4.3:35332088-35332107 | None:intergenic | 15.0% |
| !! | TTAAATTATTTGATCTTTAC+AGG | - | chr4.3:35331812-35331831 | MS.gene49257:intron | 15.0% |
| !!! | ATTTTATGGTTTTAGTAAAA+AGG | - | chr4.3:35331602-35331621 | MS.gene49257:CDS | 15.0% |
| !! | ATGATTGAAAGTTGAAAATT+CGG | - | chr4.3:35332441-35332460 | MS.gene49257:CDS | 20.0% |
| !! | ATGCTAAAATTACAGTTAAT+AGG | - | chr4.3:35331072-35331091 | MS.gene49257:intron | 20.0% |
| !! | GTATGATAAATTAGTTACTT+AGG | - | chr4.3:35331382-35331401 | MS.gene49257:intron | 20.0% |
| !! | TAGTAAAAAATGATGTAACA+CGG | - | chr4.3:35330946-35330965 | MS.gene49257:CDS | 20.0% |
| !!! | AAATCTTCATTTTGATGAAA+AGG | + | chr4.3:35332390-35332409 | None:intergenic | 20.0% |
| !!! | TCTCTTAATTTGTCATTATT+TGG | - | chr4.3:35330875-35330894 | MS.gene49257:CDS | 20.0% |
| !!! | TGATTTTTCTGTTTATTACT+CGG | - | chr4.3:35331177-35331196 | MS.gene49257:intron | 20.0% |
| ! | AATTGAATTGAAGATATGCA+GGG | + | chr4.3:35331881-35331900 | None:intergenic | 25.0% |
| ! | AATTTGTATCTACCTGTAAA+TGG | + | chr4.3:35332242-35332261 | None:intergenic | 25.0% |
| ! | ACACTTATTATGTGCAATAT+AGG | - | chr4.3:35331143-35331162 | MS.gene49257:intron | 25.0% |
| ! | CTAAAATTACAGTTAATAGG+AGG | - | chr4.3:35331075-35331094 | MS.gene49257:intron | 25.0% |
| !! | ATCTTCACAACAATTTTTGA+TGG | - | chr4.3:35330474-35330493 | MS.gene49257:intron | 25.0% |
| !! | TTTTCAAAATCTTCATAGTG+TGG | - | chr4.3:35332178-35332197 | MS.gene49257:CDS | 25.0% |
| !!! | GATTAGGAACAATATTTTAG+AGG | + | chr4.3:35332072-35332091 | None:intergenic | 25.0% |
| AAAATCACTGAGCAAACAAA+GGG | - | chr4.3:35330661-35330680 | MS.gene49257:intron | 30.0% | |
| AAAGGACTTATCAATATCTG+TGG | + | chr4.3:35332372-35332391 | None:intergenic | 30.0% | |
| AAGGACTTATCAATATCTGT+GGG | + | chr4.3:35332371-35332390 | None:intergenic | 30.0% | |
| ATATAAAGTCCAAAGACAAG+AGG | - | chr4.3:35330608-35330627 | MS.gene49257:intron | 30.0% | |
| GAATTGAATTGAAGATATGC+AGG | + | chr4.3:35331882-35331901 | None:intergenic | 30.0% | |
| GTTTATTACTCGGAGTTTAA+AGG | - | chr4.3:35331187-35331206 | MS.gene49257:intron | 30.0% | |
| TATTTGCAAGATTTAGTACC+AGG | - | chr4.3:35331268-35331287 | MS.gene49257:intron | 30.0% | |
| TCGAAGAAACCATTAAGAAA+AGG | - | chr4.3:35330566-35330585 | MS.gene49257:intron | 30.0% | |
| TCTACATTTGACCGTAATTA+AGG | - | chr4.3:35331685-35331704 | MS.gene49257:intron | 30.0% | |
| TTACATTGTCTTAACACTTC+TGG | - | chr4.3:35330322-35330341 | MS.gene49257:CDS | 30.0% | |
| ! | AGAGAAAATTGTGATGATGT+TGG | - | chr4.3:35330709-35330728 | MS.gene49257:CDS | 30.0% |
| ! | ATCAGCTTTCCTTTTCTTAA+TGG | + | chr4.3:35330578-35330597 | None:intergenic | 30.0% |
| ! | CAAAAAGCGCAAATCATTAA+TGG | + | chr4.3:35331767-35331786 | None:intergenic | 30.0% |
| ! | GGACACAATGCAAAATTTTA+TGG | - | chr4.3:35331588-35331607 | MS.gene49257:CDS | 30.0% |
| ! | GTGGATTGATAAACAATATG+GGG | - | chr4.3:35331928-35331947 | MS.gene49257:intron | 30.0% |
| !! | AGGAACAATATTTTAGAGGA+CGG | + | chr4.3:35332068-35332087 | None:intergenic | 30.0% |
| !! | GGTGGATTGATAAACAATAT+GGG | - | chr4.3:35331927-35331946 | MS.gene49257:intron | 30.0% |
| !! | TCACAACAATTTTTGATGGT+TGG | - | chr4.3:35330478-35330497 | MS.gene49257:intron | 30.0% |
| !! | TGGTGGATTGATAAACAATA+TGG | - | chr4.3:35331926-35331945 | MS.gene49257:intron | 30.0% |
| !!! | ATGTTTTGTTTTATGACTGC+AGG | - | chr4.3:35332532-35332551 | MS.gene49257:CDS | 30.0% |
| AATTGTTTGCCAAAGAGGTA+TGG | - | chr4.3:35331567-35331586 | MS.gene49257:CDS | 35.0% | |
| AGATGATACAGCCTTAATCA+CGG | + | chr4.3:35331668-35331687 | None:intergenic | 35.0% | |
| AGGACTTATCAATATCTGTG+GGG | + | chr4.3:35332370-35332389 | None:intergenic | 35.0% | |
| CAAAATCACTGAGCAAACAA+AGG | - | chr4.3:35330660-35330679 | MS.gene49257:intron | 35.0% | |
| CAATGTTGAAGTCAAGTCTT+GGG | + | chr4.3:35331544-35331563 | None:intergenic | 35.0% | |
| CCTTGCAAACCTTTATATTC+CGG | - | chr4.3:35332473-35332492 | MS.gene49257:CDS | 35.0% | |
| CTTTATATTCCGGAAAAACG+CGG | - | chr4.3:35332483-35332502 | MS.gene49257:CDS | 35.0% | |
| GAAAAGGAAAGCTGATAACA+AGG | - | chr4.3:35330582-35330601 | MS.gene49257:intron | 35.0% | |
| GAAGGGAAAAAATAAGCGAA+AGG | - | chr4.3:35331239-35331258 | MS.gene49257:intron | 35.0% | |
| GACATTTCTGATTGCATCAT+TGG | + | chr4.3:35331855-35331874 | None:intergenic | 35.0% | |
| GACTCATAACGCCTTAATTA+CGG | + | chr4.3:35331699-35331718 | None:intergenic | 35.0% | |
| GATGAGTCAAGAAAGATTTC+AGG | + | chr4.3:35332014-35332033 | None:intergenic | 35.0% | |
| TATCCATCAATCATGATCGT+CGG | + | chr4.3:35330985-35331004 | None:intergenic | 35.0% | |
| TCAATGTTGAAGTCAAGTCT+TGG | + | chr4.3:35331545-35331564 | None:intergenic | 35.0% | |
| TCATTGACAAGAACTGCATT+TGG | + | chr4.3:35331505-35331524 | None:intergenic | 35.0% | |
| TCTCAAGTCTCTATCATCTA+TGG | + | chr4.3:35332346-35332365 | None:intergenic | 35.0% | |
| TGATGAATTGTTTGCCAAAG+AGG | - | chr4.3:35331562-35331581 | MS.gene49257:CDS | 35.0% | |
| TTTCCTTCTCAACCATTTAC+AGG | - | chr4.3:35332227-35332246 | MS.gene49257:CDS | 35.0% | |
| ! | AACACTTCTGGAAATCTAGT+AGG | - | chr4.3:35330334-35330353 | MS.gene49257:CDS | 35.0% |
| ! | ATGTGCAATATAGGTTAGCT+CGG | - | chr4.3:35331152-35331171 | MS.gene49257:intron | 35.0% |
| ! | CAACAACTAGTTTCATGTTG+TGG | - | chr4.3:35331906-35331925 | MS.gene49257:intron | 35.0% |
| ! | TGAACCTTTCGAATTTTCCT+TGG | + | chr4.3:35330737-35330756 | None:intergenic | 35.0% |
| !! | ATCAAAGTGAGTGTTGAAGA+AGG | - | chr4.3:35330631-35330650 | MS.gene49257:intron | 35.0% |
| !! | CATAGTGTGGATTTTGATCA+AGG | - | chr4.3:35332191-35332210 | MS.gene49257:CDS | 35.0% |
| !! | CTTTCTACTTCTAAGATTGC+AGG | + | chr4.3:35332295-35332314 | None:intergenic | 35.0% |
| !! | CTTTGTTTGCTCAGTGATTT+TGG | + | chr4.3:35330662-35330681 | None:intergenic | 35.0% |
| AAAATCACCTTCCCAAGTTG+AGG | + | chr4.3:35332162-35332181 | None:intergenic | 40.0% | |
| AAAGGTTTGCAAGGTAACCA+CGG | + | chr4.3:35332467-35332486 | None:intergenic | 40.0% | |
| AACAAAATTGCAGGCAAAGC+TGG | - | chr4.3:35331295-35331314 | MS.gene49257:intron | 40.0% | |
| AAGGAAAGCTGATAACAAGG+TGG | - | chr4.3:35330585-35330604 | MS.gene49257:intron | 40.0% | |
| ATATCCTACCATCCTCAACT+TGG | - | chr4.3:35332147-35332166 | MS.gene49257:CDS | 40.0% | |
| ATTCCGACGATCATGATTGA+TGG | - | chr4.3:35330979-35330998 | MS.gene49257:CDS | 40.0% | |
| CACTTTGATCCTCTTGTCTT+TGG | + | chr4.3:35330620-35330639 | None:intergenic | 40.0% | |
| CATTTCCCGAAAAGTAACGT+CGG | + | chr4.3:35330450-35330469 | None:intergenic | 40.0% | |
| CCAGGATGTAACAAAATTGC+AGG | - | chr4.3:35331286-35331305 | MS.gene49257:intron | 40.0% | |
| CCGGAATATAAAGGTTTGCA+AGG | + | chr4.3:35332476-35332495 | None:intergenic | 40.0% | |
| CTACCTGTAAATGGTTGAGA+AGG | + | chr4.3:35332233-35332252 | None:intergenic | 40.0% | |
| GCACAAAACAGAACAAACGT+TGG | + | chr4.3:35331213-35331232 | None:intergenic | 40.0% | |
| GCTCGAACATGAATGTAATC+AGG | + | chr4.3:35330778-35330797 | None:intergenic | 40.0% | |
| GGCATCAAAAATCATGATGC+TGG | + | chr4.3:35331635-35331654 | None:intergenic | 40.0% | |
| GGTTCCAAGGAAAATTCGAA+AGG | - | chr4.3:35330730-35330749 | MS.gene49257:CDS | 40.0% | |
| GTCTCTTCAAAGACAAGTTG+AGG | - | chr4.3:35331348-35331367 | MS.gene49257:CDS | 40.0% | |
| GTTCGTGTTCATGTTCATGT+TGG | + | chr4.3:35330414-35330433 | None:intergenic | 40.0% | |
| TATCCTACCATCCTCAACTT+GGG | - | chr4.3:35332148-35332167 | MS.gene49257:CDS | 40.0% | |
| TCGAAGGAACATTAATGCAC+CGG | - | chr4.3:35331974-35331993 | MS.gene49257:intron | 40.0% | |
| TCTTTCCAACACTGTCATGT+CGG | + | chr4.3:35330371-35330390 | None:intergenic | 40.0% | |
| TGAAGCTAGCAATCTGAAGA+TGG | - | chr4.3:35332561-35332580 | MS.gene49257:CDS | 40.0% | |
| TGTTGGAAAGACAAAGAGCA+AGG | - | chr4.3:35330380-35330399 | MS.gene49257:intron | 40.0% | |
| TGTTGTGATTCGCGATATTG+TGG | + | chr4.3:35331741-35331760 | None:intergenic | 40.0% | |
| ! | ACGTTTGTTCTGTTTTGTGC+AGG | - | chr4.3:35331213-35331232 | MS.gene49257:intron | 40.0% |
| ! | ACTTCTGGAAATCTAGTAGG+AGG | - | chr4.3:35330337-35330356 | MS.gene49257:CDS | 40.0% |
| ! | CAACTAGTTTCATGTTGTGG+TGG | - | chr4.3:35331909-35331928 | MS.gene49257:intron | 40.0% |
| ! | CCTGCAATTTTGTTACATCC+TGG | + | chr4.3:35331289-35331308 | None:intergenic | 40.0% |
| ! | CGCGTTTTTCCGGAATATAA+AGG | + | chr4.3:35332485-35332504 | None:intergenic | 40.0% |
| ! | CTGTTTTGTGCAGGTTAGAA+GGG | - | chr4.3:35331222-35331241 | MS.gene49257:intron | 40.0% |
| ! | GCATCATGATTTTTGATGCC+AGG | - | chr4.3:35331635-35331654 | MS.gene49257:CDS | 40.0% |
| ! | TCTGTTTTGTGCAGGTTAGA+AGG | - | chr4.3:35331221-35331240 | MS.gene49257:intron | 40.0% |
| !! | ACTTCTAAGATTGCAGGCTA+AGG | + | chr4.3:35332289-35332308 | None:intergenic | 40.0% |
| !! | GGTTTTAGTAAAAAGGTCCG+CGG | - | chr4.3:35331609-35331628 | MS.gene49257:CDS | 40.0% |
| !! | TTGTGATGATGTTGGTTCCA+AGG | - | chr4.3:35330717-35330736 | MS.gene49257:CDS | 40.0% |
| AAAAATCATGATGCTGGCCG+CGG | + | chr4.3:35331629-35331648 | None:intergenic | 45.0% | |
| AAAACGCGGTAGATTCGATG+CGG | - | chr4.3:35332497-35332516 | MS.gene49257:CDS | 45.0% | |
| CAACACTGTCATGTCGGAAA+TGG | + | chr4.3:35330365-35330384 | None:intergenic | 45.0% | |
| CATTTCCGACATGACAGTGT+TGG | - | chr4.3:35330363-35330382 | MS.gene49257:intron | 45.0% | |
| CGCGATATTGTGGATAATCG+CGG | + | chr4.3:35331731-35331750 | None:intergenic | 45.0% | |
| GAAAGTTGAAAATTCGGCCG+TGG | - | chr4.3:35332447-35332466 | MS.gene49257:CDS | 45.0% | |
| GCATTGTGTCCATACCTCTT+TGG | + | chr4.3:35331579-35331598 | None:intergenic | 45.0% | |
| GTTGGTTGTGATTCTGCTCT+TGG | - | chr4.3:35330496-35330515 | MS.gene49257:intron | 45.0% | |
| TAACTCTATGAAACCCGACC+CGG | - | chr4.3:35330531-35330550 | MS.gene49257:intron | 45.0% | |
| TCAGGTAAAGATGCAGATGC+CGG | + | chr4.3:35331996-35332015 | None:intergenic | 45.0% | |
| TTCCTTCGAACCCCAATTTC+CGG | + | chr4.3:35331963-35331982 | None:intergenic | 45.0% | |
| ! | TCGAATCTACCGCGTTTTTC+CGG | + | chr4.3:35332495-35332514 | None:intergenic | 45.0% |
| ! | TCTTCGACGTTTTCGAAACC+CGG | + | chr4.3:35330553-35330572 | None:intergenic | 45.0% |
| !!! | CAACACCGACGTTACTTTTC+GGG | - | chr4.3:35330442-35330461 | MS.gene49257:intron | 45.0% |
| !!! | CGACGTTACTTTTCGGGAAA+TGG | - | chr4.3:35330448-35330467 | MS.gene49257:intron | 45.0% |
| !!! | GCAACACCGACGTTACTTTT+CGG | - | chr4.3:35330441-35330460 | MS.gene49257:intron | 45.0% |
| AAACGCGGTAGATTCGATGC+GGG | - | chr4.3:35332498-35332517 | MS.gene49257:CDS | 50.0% | |
| AACTCTATGAAACCCGACCC+GGG | - | chr4.3:35330532-35330551 | MS.gene49257:intron | 50.0% | |
| ATTCATGTTCGAGCACGTCG+CGG | - | chr4.3:35330784-35330803 | MS.gene49257:intron | 50.0% | |
| CAATATGGGGATAGTCCCTC+CGG | - | chr4.3:35331941-35331960 | MS.gene49257:intron | 50.0% | |
| CTACCATCCTCAACTTGGGA+AGG | - | chr4.3:35332152-35332171 | MS.gene49257:CDS | 50.0% | |
| GATAGTCCCTCCGGAAATTG+GGG | - | chr4.3:35331950-35331969 | MS.gene49257:intron | 50.0% | |
| GGATAGTCCCTCCGGAAATT+GGG | - | chr4.3:35331949-35331968 | MS.gene49257:intron | 50.0% | |
| TACAGCCTTAATCACGGTCG+TGG | + | chr4.3:35331662-35331681 | None:intergenic | 50.0% | |
| TAGAGGACGGATACACAGAG+AGG | + | chr4.3:35332055-35332074 | None:intergenic | 50.0% | |
| TTCGAACCCCAATTTCCGGA+GGG | + | chr4.3:35331959-35331978 | None:intergenic | 50.0% | |
| ! | CTTCCCAAGTTGAGGATGGT+AGG | + | chr4.3:35332154-35332173 | None:intergenic | 50.0% |
| ! | CTTCGACGTTTTCGAAACCC+GGG | + | chr4.3:35330552-35330571 | None:intergenic | 50.0% |
| ! | TCACCTTCCCAAGTTGAGGA+TGG | + | chr4.3:35332158-35332177 | None:intergenic | 50.0% |
| CAGGTCCACGACCGTGATTA+AGG | - | chr4.3:35331654-35331673 | MS.gene49257:CDS | 55.0% | |
| CTCCGGAAATTGGGGTTCGA+AGG | - | chr4.3:35331958-35331977 | MS.gene49257:intron | 55.0% | |
| CTTAATCACGGTCGTGGACC+TGG | + | chr4.3:35331656-35331675 | None:intergenic | 55.0% | |
| CTTCGAACCCCAATTTCCGG+AGG | + | chr4.3:35331960-35331979 | None:intergenic | 55.0% | |
| GGGATAGTCCCTCCGGAAAT+TGG | - | chr4.3:35331948-35331967 | MS.gene49257:intron | 55.0% | |
| ! | ACGTTTTCGAAACCCGGGTC+GGG | + | chr4.3:35330547-35330566 | None:intergenic | 55.0% |
| ! | GACGTTTTCGAAACCCGGGT+CGG | + | chr4.3:35330548-35330567 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 35330319 | 35332591 | 35330319 | ID=MS.gene49257 |
| chr4.3 | mRNA | 35330319 | 35332591 | 35330319 | ID=MS.gene49257.t1;Parent=MS.gene49257 |
| chr4.3 | exon | 35332070 | 35332591 | 35332070 | ID=MS.gene49257.t1.exon1;Parent=MS.gene49257.t1 |
| chr4.3 | CDS | 35332070 | 35332591 | 35332070 | ID=cds.MS.gene49257.t1;Parent=MS.gene49257.t1 |
| chr4.3 | exon | 35331541 | 35331675 | 35331541 | ID=MS.gene49257.t1.exon2;Parent=MS.gene49257.t1 |
| chr4.3 | CDS | 35331541 | 35331675 | 35331541 | ID=cds.MS.gene49257.t1;Parent=MS.gene49257.t1 |
| chr4.3 | exon | 35331327 | 35331398 | 35331327 | ID=MS.gene49257.t1.exon3;Parent=MS.gene49257.t1 |
| chr4.3 | CDS | 35331327 | 35331398 | 35331327 | ID=cds.MS.gene49257.t1;Parent=MS.gene49257.t1 |
| chr4.3 | exon | 35330867 | 35331076 | 35330867 | ID=MS.gene49257.t1.exon4;Parent=MS.gene49257.t1 |
| chr4.3 | CDS | 35330867 | 35331076 | 35330867 | ID=cds.MS.gene49257.t1;Parent=MS.gene49257.t1 |
| chr4.3 | exon | 35330662 | 35330764 | 35330662 | ID=MS.gene49257.t1.exon5;Parent=MS.gene49257.t1 |
| chr4.3 | CDS | 35330662 | 35330764 | 35330662 | ID=cds.MS.gene49257.t1;Parent=MS.gene49257.t1 |
| chr4.3 | exon | 35330319 | 35330356 | 35330319 | ID=MS.gene49257.t1.exon6;Parent=MS.gene49257.t1 |
| chr4.3 | CDS | 35330319 | 35330356 | 35330319 | ID=cds.MS.gene49257.t1;Parent=MS.gene49257.t1 |
| Gene Sequence |
| Protein sequence |
