Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene069302.t1 | XP_003598421.1 | 86.6 | 269 | 31 | 1 | 1 | 264 | 1 | 269 | 2.90E-96 | 361.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene069302.t1 | Q9FL44 | 75.2 | 153 | 35 | 2 | 37 | 186 | 36 | 188 | 8.7e-57 | 221.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene069302.t1 | G7IVT9 | 86.6 | 269 | 31 | 1 | 1 | 264 | 1 | 269 | 2.1e-96 | 361.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049171 | MS.gene069302 | 0.811042 | 8.53E-51 | -1.69E-46 |
MS.gene049173 | MS.gene069302 | 0.834523 | 2.85E-56 | -1.69E-46 |
MS.gene049217 | MS.gene069302 | 0.8577 | 1.37E-62 | -1.69E-46 |
MS.gene049222 | MS.gene069302 | 0.851919 | 6.49E-61 | -1.69E-46 |
MS.gene049232 | MS.gene069302 | 0.801181 | 1.02E-48 | -1.69E-46 |
MS.gene049285 | MS.gene069302 | 0.860023 | 2.76E-63 | -1.69E-46 |
MS.gene049320 | MS.gene069302 | 0.85426 | 1.39E-61 | -1.69E-46 |
MS.gene049356 | MS.gene069302 | 0.839768 | 1.30E-57 | -1.69E-46 |
MS.gene049369 | MS.gene069302 | 0.866621 | 2.49E-65 | -1.69E-46 |
MS.gene049396 | MS.gene069302 | 0.830366 | 3.06E-55 | -1.69E-46 |
MS.gene049427 | MS.gene069302 | 0.829893 | 3.99E-55 | -1.69E-46 |
MS.gene049609 | MS.gene069302 | 0.858761 | 6.60E-63 | -1.69E-46 |
MS.gene049633 | MS.gene069302 | 0.841708 | 4.03E-58 | -1.69E-46 |
MS.gene049805 | MS.gene069302 | 0.829524 | 4.90E-55 | -1.69E-46 |
MS.gene049907 | MS.gene069302 | 0.815238 | 1.02E-51 | -1.69E-46 |
MS.gene05010 | MS.gene069302 | 0.80206 | 6.71E-49 | -1.69E-46 |
MS.gene050163 | MS.gene069302 | 0.836133 | 1.12E-56 | -1.69E-46 |
MS.gene050165 | MS.gene069302 | 0.831903 | 1.28E-55 | -1.69E-46 |
MS.gene050323 | MS.gene069302 | 0.818397 | 2.00E-52 | -1.69E-46 |
MS.gene050333 | MS.gene069302 | 0.83262 | 8.52E-56 | -1.69E-46 |
MS.gene050432 | MS.gene069302 | 0.824588 | 7.44E-54 | -1.69E-46 |
MS.gene050444 | MS.gene069302 | 0.817387 | 3.39E-52 | -1.69E-46 |
MS.gene050504 | MS.gene069302 | 0.81959 | 1.07E-52 | -1.69E-46 |
MS.gene050518 | MS.gene069302 | 0.839825 | 1.26E-57 | -1.69E-46 |
MS.gene050520 | MS.gene069302 | 0.826321 | 2.89E-54 | -1.69E-46 |
MS.gene050538 | MS.gene069302 | 0.830985 | 2.16E-55 | -1.69E-46 |
MS.gene050593 | MS.gene069302 | 0.858229 | 9.51E-63 | -1.69E-46 |
MS.gene050612 | MS.gene069302 | 0.83822 | 3.27E-57 | -1.69E-46 |
MS.gene050662 | MS.gene069302 | 0.816626 | 5.02E-52 | -1.69E-46 |
MS.gene050675 | MS.gene069302 | 0.857385 | 1.69E-62 | -1.69E-46 |
MS.gene050686 | MS.gene069302 | 0.835634 | 1.50E-56 | -1.69E-46 |
MS.gene050699 | MS.gene069302 | 0.834408 | 3.05E-56 | -1.69E-46 |
MS.gene050747 | MS.gene069302 | 0.82453 | 7.68E-54 | -1.69E-46 |
MS.gene050767 | MS.gene069302 | 0.815382 | 9.51E-52 | -1.69E-46 |
MS.gene050770 | MS.gene069302 | 0.818482 | 1.92E-52 | -1.69E-46 |
MS.gene050772 | MS.gene069302 | 0.878853 | 2.01E-69 | -1.69E-46 |
MS.gene05080 | MS.gene069302 | 0.849122 | 3.96E-60 | -1.69E-46 |
MS.gene050868 | MS.gene069302 | 0.813124 | 3.00E-51 | -1.69E-46 |
MS.gene050871 | MS.gene069302 | 0.814579 | 1.43E-51 | -1.69E-46 |
MS.gene050950 | MS.gene069302 | 0.825245 | 5.21E-54 | -1.69E-46 |
MS.gene050986 | MS.gene069302 | 0.826031 | 3.39E-54 | -1.69E-46 |
MS.gene05105 | MS.gene069302 | 0.84893 | 4.48E-60 | -1.69E-46 |
MS.gene051228 | MS.gene069302 | 0.866483 | 2.76E-65 | -1.69E-46 |
MS.gene051255 | MS.gene069302 | 0.805235 | 1.47E-49 | -1.69E-46 |
MS.gene051387 | MS.gene069302 | 0.813278 | 2.78E-51 | -1.69E-46 |
MS.gene051434 | MS.gene069302 | 0.819148 | 1.35E-52 | -1.69E-46 |
MS.gene051617 | MS.gene069302 | 0.860219 | 2.41E-63 | -1.69E-46 |
MS.gene051666 | MS.gene069302 | 0.821963 | 3.05E-53 | -1.69E-46 |
MS.gene051734 | MS.gene069302 | 0.857446 | 1.62E-62 | -1.69E-46 |
MS.gene051810 | MS.gene069302 | 0.858055 | 1.07E-62 | -1.69E-46 |
MS.gene051838 | MS.gene069302 | 0.812574 | 3.96E-51 | -1.69E-46 |
MS.gene051858 | MS.gene069302 | 0.836166 | 1.10E-56 | -1.69E-46 |
MS.gene051949 | MS.gene069302 | 0.801577 | 8.43E-49 | -1.69E-46 |
MS.gene052188 | MS.gene069302 | 0.801539 | 8.58E-49 | -1.69E-46 |
MS.gene052271 | MS.gene069302 | 0.860493 | 1.99E-63 | -1.69E-46 |
MS.gene052310 | MS.gene069302 | 0.807435 | 5.06E-50 | -1.69E-46 |
MS.gene052379 | MS.gene069302 | 0.861194 | 1.22E-63 | -1.69E-46 |
MS.gene052421 | MS.gene069302 | 0.815284 | 1.00E-51 | -1.69E-46 |
MS.gene052484 | MS.gene069302 | 0.82381 | 1.13E-53 | -1.69E-46 |
MS.gene052503 | MS.gene069302 | 0.810687 | 1.02E-50 | -1.69E-46 |
MS.gene052615 | MS.gene069302 | 0.840048 | 1.10E-57 | -1.69E-46 |
MS.gene052822 | MS.gene069302 | 0.805866 | 1.09E-49 | -1.69E-46 |
MS.gene052870 | MS.gene069302 | 0.880081 | 7.36E-70 | -1.69E-46 |
MS.gene052872 | MS.gene069302 | 0.888034 | 8.44E-73 | -1.69E-46 |
MS.gene052916 | MS.gene069302 | 0.8321 | 1.15E-55 | -1.69E-46 |
MS.gene052966 | MS.gene069302 | 0.809271 | 2.05E-50 | -1.69E-46 |
MS.gene053104 | MS.gene069302 | 0.869324 | 3.37E-66 | -1.69E-46 |
MS.gene053107 | MS.gene069302 | 0.803576 | 3.26E-49 | -1.69E-46 |
MS.gene053207 | MS.gene069302 | 0.838401 | 2.94E-57 | -1.69E-46 |
MS.gene053213 | MS.gene069302 | 0.858321 | 8.93E-63 | -1.69E-46 |
MS.gene053286 | MS.gene069302 | 0.85371 | 2.00E-61 | -1.69E-46 |
MS.gene053322 | MS.gene069302 | 0.816185 | 6.30E-52 | -1.69E-46 |
MS.gene053384 | MS.gene069302 | 0.839259 | 1.76E-57 | -1.69E-46 |
MS.gene053449 | MS.gene069302 | 0.837972 | 3.79E-57 | -1.69E-46 |
MS.gene053574 | MS.gene069302 | 0.86009 | 2.63E-63 | -1.69E-46 |
MS.gene053632 | MS.gene069302 | 0.838735 | 2.41E-57 | -1.69E-46 |
MS.gene053813 | MS.gene069302 | 0.808704 | 2.72E-50 | -1.69E-46 |
MS.gene053824 | MS.gene069302 | 0.85734 | 1.74E-62 | -1.69E-46 |
MS.gene053916 | MS.gene069302 | 0.85035 | 1.80E-60 | -1.69E-46 |
MS.gene054376 | MS.gene069302 | 0.800432 | 1.45E-48 | -1.69E-46 |
MS.gene054543 | MS.gene069302 | 0.805919 | 1.06E-49 | -1.69E-46 |
MS.gene054600 | MS.gene069302 | 0.841354 | 5.00E-58 | -1.69E-46 |
MS.gene054642 | MS.gene069302 | 0.871396 | 7.06E-67 | -1.69E-46 |
MS.gene05494 | MS.gene069302 | 0.818098 | 2.34E-52 | -1.69E-46 |
MS.gene054954 | MS.gene069302 | 0.832365 | 9.86E-56 | -1.69E-46 |
MS.gene05505 | MS.gene069302 | 0.862157 | 6.18E-64 | -1.69E-46 |
MS.gene055206 | MS.gene069302 | 0.848846 | 4.72E-60 | -1.69E-46 |
MS.gene055212 | MS.gene069302 | 0.835932 | 1.26E-56 | -1.69E-46 |
MS.gene055224 | MS.gene069302 | 0.857199 | 1.92E-62 | -1.69E-46 |
MS.gene055289 | MS.gene069302 | 0.823383 | 1.43E-53 | -1.69E-46 |
MS.gene055362 | MS.gene069302 | 0.821665 | 3.58E-53 | -1.69E-46 |
MS.gene055397 | MS.gene069302 | 0.845173 | 4.79E-59 | -1.69E-46 |
MS.gene055499 | MS.gene069302 | 0.8013 | 9.61E-49 | -1.69E-46 |
MS.gene055502 | MS.gene069302 | 0.847341 | 1.23E-59 | -1.69E-46 |
MS.gene055577 | MS.gene069302 | 0.850753 | 1.38E-60 | -1.69E-46 |
MS.gene055620 | MS.gene069302 | 0.821537 | 3.83E-53 | -1.69E-46 |
MS.gene055636 | MS.gene069302 | 0.831646 | 1.48E-55 | -1.69E-46 |
MS.gene055638 | MS.gene069302 | 0.828746 | 7.57E-55 | -1.69E-46 |
MS.gene055647 | MS.gene069302 | 0.848839 | 4.74E-60 | -1.69E-46 |
MS.gene055722 | MS.gene069302 | 0.874748 | 5.30E-68 | -1.69E-46 |
MS.gene055748 | MS.gene069302 | 0.808389 | 3.17E-50 | -1.69E-46 |
MS.gene055750 | MS.gene069302 | 0.826482 | 2.65E-54 | -1.69E-46 |
MS.gene055751 | MS.gene069302 | 0.814945 | 1.19E-51 | -1.69E-46 |
MS.gene05592 | MS.gene069302 | 0.876048 | 1.90E-68 | -1.69E-46 |
MS.gene055941 | MS.gene069302 | 0.868199 | 7.80E-66 | -1.69E-46 |
MS.gene056374 | MS.gene069302 | 0.816846 | 4.48E-52 | -1.69E-46 |
MS.gene056410 | MS.gene069302 | 0.810098 | 1.36E-50 | -1.69E-46 |
MS.gene056422 | MS.gene069302 | 0.839226 | 1.80E-57 | -1.69E-46 |
MS.gene056487 | MS.gene069302 | 0.831963 | 1.24E-55 | -1.69E-46 |
MS.gene056504 | MS.gene069302 | 0.81794 | 2.54E-52 | -1.69E-46 |
MS.gene056510 | MS.gene069302 | 0.820581 | 6.36E-53 | -1.69E-46 |
MS.gene056511 | MS.gene069302 | 0.846129 | 2.64E-59 | -1.69E-46 |
MS.gene056549 | MS.gene069302 | 0.813123 | 3.00E-51 | -1.69E-46 |
MS.gene056609 | MS.gene069302 | 0.856504 | 3.08E-62 | -1.69E-46 |
MS.gene056657 | MS.gene069302 | 0.87758 | 5.61E-69 | -1.69E-46 |
MS.gene056692 | MS.gene069302 | 0.807849 | 4.13E-50 | -1.69E-46 |
MS.gene056897 | MS.gene069302 | 0.837528 | 4.93E-57 | -1.69E-46 |
MS.gene056947 | MS.gene069302 | 0.867551 | 1.26E-65 | -1.69E-46 |
MS.gene057011 | MS.gene069302 | 0.804128 | 2.51E-49 | -1.69E-46 |
MS.gene057076 | MS.gene069302 | 0.899433 | 1.99E-77 | -1.69E-46 |
MS.gene057129 | MS.gene069302 | 0.843271 | 1.55E-58 | -1.69E-46 |
MS.gene057331 | MS.gene069302 | 0.862091 | 6.48E-64 | -1.69E-46 |
MS.gene05735 | MS.gene069302 | 0.840125 | 1.05E-57 | -1.69E-46 |
MS.gene057416 | MS.gene069302 | 0.843374 | 1.46E-58 | -1.69E-46 |
MS.gene057734 | MS.gene069302 | 0.819224 | 1.30E-52 | -1.69E-46 |
MS.gene057775 | MS.gene069302 | 0.803361 | 3.62E-49 | -1.69E-46 |
MS.gene057831 | MS.gene069302 | 0.811761 | 5.96E-51 | -1.69E-46 |
MS.gene057857 | MS.gene069302 | 0.803075 | 4.15E-49 | -1.69E-46 |
MS.gene057926 | MS.gene069302 | 0.872317 | 3.49E-67 | -1.69E-46 |
MS.gene057927 | MS.gene069302 | 0.855201 | 7.40E-62 | -1.69E-46 |
MS.gene058019 | MS.gene069302 | 0.846279 | 2.40E-59 | -1.69E-46 |
MS.gene058130 | MS.gene069302 | 0.815666 | 8.22E-52 | -1.69E-46 |
MS.gene058323 | MS.gene069302 | 0.814891 | 1.22E-51 | -1.69E-46 |
MS.gene058338 | MS.gene069302 | 0.843309 | 1.52E-58 | -1.69E-46 |
MS.gene05837 | MS.gene069302 | 0.821412 | 4.09E-53 | -1.69E-46 |
MS.gene058419 | MS.gene069302 | 0.86046 | 2.03E-63 | -1.69E-46 |
MS.gene058459 | MS.gene069302 | 0.811578 | 6.53E-51 | -1.69E-46 |
MS.gene058723 | MS.gene069302 | 0.843064 | 1.76E-58 | -1.69E-46 |
MS.gene058748 | MS.gene069302 | 0.816819 | 4.54E-52 | -1.69E-46 |
MS.gene058773 | MS.gene069302 | 0.826539 | 2.57E-54 | -1.69E-46 |
MS.gene058838 | MS.gene069302 | 0.812115 | 4.99E-51 | -1.69E-46 |
MS.gene059022 | MS.gene069302 | 0.812927 | 3.31E-51 | -1.69E-46 |
MS.gene059023 | MS.gene069302 | 0.83393 | 4.02E-56 | -1.69E-46 |
MS.gene059029 | MS.gene069302 | 0.85518 | 7.50E-62 | -1.69E-46 |
MS.gene059079 | MS.gene069302 | 0.805165 | 1.52E-49 | -1.69E-46 |
MS.gene05913 | MS.gene069302 | 0.876983 | 9.04E-69 | -1.69E-46 |
MS.gene059305 | MS.gene069302 | 0.816932 | 4.29E-52 | -1.69E-46 |
MS.gene05934 | MS.gene069302 | 0.868114 | 8.30E-66 | -1.69E-46 |
MS.gene059366 | MS.gene069302 | 0.802622 | 5.14E-49 | -1.69E-46 |
MS.gene059367 | MS.gene069302 | 0.823605 | 1.27E-53 | -1.69E-46 |
MS.gene059368 | MS.gene069302 | 0.803769 | 2.98E-49 | -1.69E-46 |
MS.gene059455 | MS.gene069302 | 0.827407 | 1.59E-54 | -1.69E-46 |
MS.gene059536 | MS.gene069302 | 0.817364 | 3.43E-52 | -1.69E-46 |
MS.gene059674 | MS.gene069302 | 0.818758 | 1.66E-52 | -1.69E-46 |
MS.gene059676 | MS.gene069302 | 0.820667 | 6.08E-53 | -1.69E-46 |
MS.gene059677 | MS.gene069302 | 0.844501 | 7.27E-59 | -1.69E-46 |
MS.gene059688 | MS.gene069302 | 0.823455 | 1.37E-53 | -1.69E-46 |
MS.gene059692 | MS.gene069302 | 0.824367 | 8.39E-54 | -1.69E-46 |
MS.gene059695 | MS.gene069302 | 0.829616 | 4.66E-55 | -1.69E-46 |
MS.gene059711 | MS.gene069302 | 0.841559 | 4.42E-58 | -1.69E-46 |
MS.gene059718 | MS.gene069302 | 0.838971 | 2.09E-57 | -1.69E-46 |
MS.gene059756 | MS.gene069302 | 0.80053 | 1.38E-48 | -1.69E-46 |
MS.gene059865 | MS.gene069302 | 0.830526 | 2.80E-55 | -1.69E-46 |
MS.gene059902 | MS.gene069302 | 0.825525 | 4.47E-54 | -1.69E-46 |
MS.gene059960 | MS.gene069302 | 0.848576 | 5.61E-60 | -1.69E-46 |
MS.gene060193 | MS.gene069302 | 0.82812 | 1.07E-54 | -1.69E-46 |
MS.gene060703 | MS.gene069302 | 0.841856 | 3.69E-58 | -1.69E-46 |
MS.gene060728 | MS.gene069302 | 0.800482 | 1.41E-48 | -1.69E-46 |
MS.gene060762 | MS.gene069302 | 0.827356 | 1.64E-54 | -1.69E-46 |
MS.gene060804 | MS.gene069302 | 0.899425 | 2.01E-77 | -1.69E-46 |
MS.gene060818 | MS.gene069302 | 0.854124 | 1.52E-61 | -1.69E-46 |
MS.gene060835 | MS.gene069302 | 0.895782 | 6.91E-76 | -1.69E-46 |
MS.gene060837 | MS.gene069302 | 0.844383 | 7.82E-59 | -1.69E-46 |
MS.gene06092 | MS.gene069302 | 0.830901 | 2.26E-55 | -1.69E-46 |
MS.gene060981 | MS.gene069302 | 0.814982 | 1.17E-51 | -1.69E-46 |
MS.gene060982 | MS.gene069302 | 0.829346 | 5.42E-55 | -1.69E-46 |
MS.gene061041 | MS.gene069302 | 0.876317 | 1.54E-68 | -1.69E-46 |
MS.gene061051 | MS.gene069302 | -0.814948 | 1.19E-51 | -1.69E-46 |
MS.gene061134 | MS.gene069302 | 0.80423 | 2.39E-49 | -1.69E-46 |
MS.gene061150 | MS.gene069302 | 0.813502 | 2.48E-51 | -1.69E-46 |
MS.gene061200 | MS.gene069302 | 0.850453 | 1.68E-60 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene069302.t1 | MTR_3g013460 | 87.037 | 270 | 28 | 3 | 1 | 264 | 1 | 269 | 1.96e-152 | 426 |
MS.gene069302.t1 | MTR_3g013460 | 84.211 | 209 | 26 | 3 | 62 | 264 | 1 | 208 | 2.08e-102 | 297 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene069302.t1 | AT5G07020 | 64.000 | 200 | 59 | 4 | 27 | 213 | 26 | 225 | 4.11e-80 | 241 |
Find 54 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATGAACTAACTTCCTTATC+AGG | 0.183830 | 3.3:-8417368 | None:intergenic |
GGCACATGTGTTGGTTGTTA+TGG | 0.357906 | 3.3:-8417234 | None:intergenic |
GTAGGTTGGGAAGGTGAGTA+TGG | 0.374281 | 3.3:+8418213 | MS.gene069302:intron |
TAGAACCGTCTCGGTGCTCT+CGG | 0.407955 | 3.3:-8419472 | None:intergenic |
TGTACCGGTCTCGGTGCTCT+CGG | 0.427751 | 3.3:-8419511 | None:intergenic |
TCTGTCTCGGCTGTCACGGC+AGG | 0.436222 | 3.3:-8419387 | None:intergenic |
GCAGAAAGTGCTATAAGTTC+AGG | 0.456072 | 3.3:+8419162 | MS.gene069302:CDS |
GCTATAAGTTCAGGAACATC+TGG | 0.456974 | 3.3:+8419171 | MS.gene069302:CDS |
CAGAACACAGCAGCAATTGC+TGG | 0.464297 | 3.3:+8419213 | MS.gene069302:CDS |
GGAAGAATGTGCCCCTGATA+AGG | 0.476565 | 3.3:+8417355 | MS.gene069302:CDS |
AGATAATGATGTACCGGTCT+CGG | 0.478743 | 3.3:-8419520 | None:intergenic |
TGGTAAGAATTCTCCTCCTC+AGG | 0.480874 | 3.3:+8419287 | MS.gene069302:CDS |
TGAACTTGAGGAACTTCTGC+AGG | 0.483064 | 3.3:-8419561 | None:intergenic |
CGTCGTAAGCAGGGTTGGAC+AGG | 0.487965 | 3.3:+8418283 | MS.gene069302:CDS |
ATATCCACCACGTCGTAAGC+AGG | 0.491350 | 3.3:+8418273 | MS.gene069302:CDS |
ATGTCCACACTTGAGGTCTC+TGG | 0.503884 | 3.3:-8419603 | None:intergenic |
GTACCGGTCTCGGTGCTCTC+GGG | 0.504561 | 3.3:-8419510 | None:intergenic |
TTGGACAGGCTATGTTGAAA+AGG | 0.509725 | 3.3:+8418297 | MS.gene069302:CDS |
TTTCCAGCCAGCAGTTTATG+TGG | 0.517990 | 3.3:+8419140 | MS.gene069302:intron |
ACATCTGGTTCTTCTTCTGA+TGG | 0.519250 | 3.3:+8419186 | MS.gene069302:CDS |
GAGGAGAAGACAAAAGTAGT+AGG | 0.520284 | 3.3:+8418247 | MS.gene069302:CDS |
AGTACCGTCTCAGTGCTCTC+AGG | 0.533255 | 3.3:-8419432 | None:intergenic |
TGAGATTCAACTTGAACTTG+AGG | 0.536784 | 3.3:-8419573 | None:intergenic |
AGAACCGTCTCGGTGCTCTC+GGG | 0.539464 | 3.3:-8419471 | None:intergenic |
GTAGTAACTAAGTGATGGCC+CGG | 0.545619 | 3.3:-8419328 | None:intergenic |
CACCACGTCGTAAGCAGGGT+TGG | 0.545868 | 3.3:+8418278 | MS.gene069302:CDS |
ATGAACTAACTTCCTTATCA+GGG | 0.546204 | 3.3:-8417367 | None:intergenic |
GGCATCATCGATACTTCTAC+AGG | 0.546287 | 3.3:+8419263 | MS.gene069302:CDS |
CTTTCTGCCACATAAACTGC+TGG | 0.548485 | 3.3:-8419147 | None:intergenic |
TATGTTGAAAAGGATACTGC+TGG | 0.576621 | 3.3:+8418307 | MS.gene069302:CDS |
TTGAACAGATAATGATGTAC+CGG | 0.577772 | 3.3:-8419526 | None:intergenic |
TGTTGAAAAGGCACATGTGT+TGG | 0.578537 | 3.3:-8417243 | None:intergenic |
CAACCCGAGAGCACCGAGAC+CGG | 0.582810 | 3.3:+8419507 | MS.gene069302:CDS |
GATGGTGATGTAGGTTGGGA+AGG | 0.583948 | 3.3:+8418204 | MS.gene069302:intron |
GAGTATGGAATGGTTAGCAG+AGG | 0.584567 | 3.3:+8418228 | MS.gene069302:CDS |
TGATGATGATAGCTCTGTCT+CGG | 0.593774 | 3.3:-8419400 | None:intergenic |
TTCTGAGTCTGATTGCAATG+AGG | 0.595506 | 3.3:+8417334 | MS.gene069302:CDS |
TCATCGATACTTCTACAGGT+TGG | 0.599103 | 3.3:+8419267 | MS.gene069302:CDS |
AGATACGATGTCCACACTTG+AGG | 0.605880 | 3.3:-8419610 | None:intergenic |
GACAAATATATATTCAGTCG+AGG | 0.616952 | 3.3:+8418333 | MS.gene069302:CDS |
TTGGGAAGGTGAGTATGGAA+TGG | 0.617296 | 3.3:+8418218 | MS.gene069302:CDS |
TTGATGTAGTAACTAAGTGA+TGG | 0.619070 | 3.3:-8419333 | None:intergenic |
AGATGATGATAGAACCGTCT+CGG | 0.624490 | 3.3:-8419481 | None:intergenic |
GTCCAACCCTGCTTACGACG+TGG | 0.625515 | 3.3:-8418280 | None:intergenic |
TAGCTCTGTCTCGGCTGTCA+CGG | 0.629380 | 3.3:-8419391 | None:intergenic |
TATCCACCACGTCGTAAGCA+GGG | 0.636876 | 3.3:+8418274 | MS.gene069302:CDS |
TGCACTGATCTCAATTGCCG+CGG | 0.650728 | 3.3:+8419242 | MS.gene069302:CDS |
TCAGCCAGAGACCTCAAGTG+TGG | 0.655701 | 3.3:+8419599 | MS.gene069302:CDS |
CAACCCTGCTTACGACGTGG+TGG | 0.656386 | 3.3:-8418277 | None:intergenic |
TAGAAGTATCGATGATGCCG+CGG | 0.670793 | 3.3:-8419259 | None:intergenic |
AACACAGCAGCAATTGCTGG+TGG | 0.671200 | 3.3:+8419216 | MS.gene069302:CDS |
TCAACCTGAGAGCACTGAGA+CGG | 0.673669 | 3.3:+8419428 | MS.gene069302:CDS |
TGAACTAACTTCCTTATCAG+GGG | 0.680079 | 3.3:-8417366 | None:intergenic |
TCAACCCGAGAGCACCGAGA+CGG | 0.695503 | 3.3:+8419467 | MS.gene069302:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTAATAGTTAAGAAAATTA+AGG | + | chr3.3:8417457-8417476 | MS.gene069302:intron | 10.0% |
!!! | TAGAATTTTTTCTATTATTA+AGG | + | chr3.3:8418357-8418376 | MS.gene069302:intron | 10.0% |
!!! | TAAAACAATATGTTTTGATT+TGG | - | chr3.3:8417515-8417534 | None:intergenic | 15.0% |
!! | ACAATTAAGTAAAAAATGGT+TGG | - | chr3.3:8417401-8417420 | None:intergenic | 20.0% |
!! | AGTTTAGAAATTACTGAATT+AGG | + | chr3.3:8417862-8417881 | MS.gene069302:intron | 20.0% |
!! | TAAGAAAATTAAGGAAAACT+AGG | + | chr3.3:8417466-8417485 | MS.gene069302:intron | 20.0% |
!!! | AATTTTACAGTATTTAGTTG+AGG | + | chr3.3:8418550-8418569 | MS.gene069302:intron | 20.0% |
!!! | GTCAATTTGAATATTGTTTT+TGG | + | chr3.3:8417633-8417652 | MS.gene069302:intron | 20.0% |
!!! | TAGAATTATATAGTCTTAGA+AGG | + | chr3.3:8417922-8417941 | MS.gene069302:intron | 20.0% |
! | AGTATTTAGTTGAGGAAAAA+TGG | + | chr3.3:8418558-8418577 | MS.gene069302:intron | 25.0% |
! | CATACATACATAAAGATCAA+AGG | - | chr3.3:8418417-8418436 | None:intergenic | 25.0% |
! | CTGCTAATCAAATTATACAA+AGG | - | chr3.3:8417614-8417633 | None:intergenic | 25.0% |
! | GCACACAATTAAGTAAAAAA+TGG | - | chr3.3:8417405-8417424 | None:intergenic | 25.0% |
! | GTAATACAAAAATCACAGTT+TGG | + | chr3.3:8418729-8418748 | MS.gene069302:intron | 25.0% |
! | GTTCATCTTGATTAGAAATT+CGG | - | chr3.3:8418156-8418175 | None:intergenic | 25.0% |
! | TACATGTGATATTTAATGCA+AGG | - | chr3.3:8418707-8418726 | None:intergenic | 25.0% |
! | TTAAATAAGTCAATCCAAAC+AGG | + | chr3.3:8418992-8419011 | MS.gene069302:intron | 25.0% |
! | TTCATCTTGATTAGAAATTC+GGG | - | chr3.3:8418155-8418174 | None:intergenic | 25.0% |
! | TTCTAATCAAGATGAACAAA+AGG | + | chr3.3:8418159-8418178 | MS.gene069302:intron | 25.0% |
!!! | ACAAAGGTGTTTGTTTATTT+TGG | + | chr3.3:8417581-8417600 | MS.gene069302:intron | 25.0% |
!!! | GTGTTTGTTTATTTTGGTTT+TGG | + | chr3.3:8417587-8417606 | MS.gene069302:intron | 25.0% |
!!! | GTTAATCTTTTGTTTCTTCA+AGG | - | chr3.3:8417279-8417298 | None:intergenic | 25.0% |
AAATGATGCCTTAAGAATCT+AGG | + | chr3.3:8419063-8419082 | MS.gene069302:intron | 30.0% | |
AATGAACTAACTTCCTTATC+AGG | - | chr3.3:8417371-8417390 | None:intergenic | 30.0% | |
ACATGCTCAACAAAATCAAA+GGG | - | chr3.3:8418451-8418470 | None:intergenic | 30.0% | |
ATAGGAGCAAATATTGAATC+AGG | - | chr3.3:8418614-8418633 | None:intergenic | 30.0% | |
ATGAACTAACTTCCTTATCA+GGG | - | chr3.3:8417370-8417389 | None:intergenic | 30.0% | |
ATTTAGTTGAGGAAAAATGG+AGG | + | chr3.3:8418561-8418580 | MS.gene069302:intron | 30.0% | |
CGAATGCCATAGAAAATTTA+AGG | - | chr3.3:8419090-8419109 | None:intergenic | 30.0% | |
GACAAATATATATTCAGTCG+AGG | + | chr3.3:8418333-8418352 | MS.gene069302:CDS | 30.0% | |
TACATGCTCAACAAAATCAA+AGG | - | chr3.3:8418452-8418471 | None:intergenic | 30.0% | |
TGAAAACACAGTCAAAATTG+TGG | + | chr3.3:8417739-8417758 | MS.gene069302:intron | 30.0% | |
TTGAACAGATAATGATGTAC+CGG | - | chr3.3:8419529-8419548 | None:intergenic | 30.0% | |
TTGATGTAGTAACTAAGTGA+TGG | - | chr3.3:8419336-8419355 | None:intergenic | 30.0% | |
TTTAAGGACCTAGATTCTTA+AGG | - | chr3.3:8419074-8419093 | None:intergenic | 30.0% | |
TTTAGTTGAGGAAAAATGGA+GGG | + | chr3.3:8418562-8418581 | MS.gene069302:intron | 30.0% | |
! | CTAGGTCCTTAAATTTTCTA+TGG | + | chr3.3:8419081-8419100 | MS.gene069302:intron | 30.0% |
! | GGAGAATTTTCTTGTTGAAA+AGG | - | chr3.3:8417258-8417277 | None:intergenic | 30.0% |
! | TATAGTCTTAGAAGGATAGT+TGG | + | chr3.3:8417930-8417949 | MS.gene069302:intron | 30.0% |
! | TCACACTATAAAGGATTTTG+AGG | - | chr3.3:8417784-8417803 | None:intergenic | 30.0% |
! | TGTTTTCACGCAATATAAAG+AGG | - | chr3.3:8417727-8417746 | None:intergenic | 30.0% |
! | TTATTTTCATAAGCTCTCCA+AGG | - | chr3.3:8418899-8418918 | None:intergenic | 30.0% |
!! | AATTCGGGTTGTACATAAAA+TGG | - | chr3.3:8418140-8418159 | None:intergenic | 30.0% |
!!! | TCTAGCATGGTTTTAAATTG+TGG | + | chr3.3:8417683-8417702 | MS.gene069302:intron | 30.0% |
!!! | TTTTTCATATAGCTCTAGCA+TGG | + | chr3.3:8417670-8417689 | MS.gene069302:intron | 30.0% |
AGAAGCTAATCCTTTGTTGA+TGG | + | chr3.3:8418186-8418205 | MS.gene069302:intron | 35.0% | |
AGACCTATTCAGCGATATTA+CGG | + | chr3.3:8417957-8417976 | MS.gene069302:intron | 35.0% | |
ATATTTGCTCCTATCGAATG+TGG | + | chr3.3:8418620-8418639 | MS.gene069302:intron | 35.0% | |
CAAATGCAGTCACACTATAA+AGG | - | chr3.3:8417793-8417812 | None:intergenic | 35.0% | |
CTGTTATGCTTTGCTTACAA+AGG | + | chr3.3:8417565-8417584 | MS.gene069302:intron | 35.0% | |
TATGTTGAAAAGGATACTGC+TGG | + | chr3.3:8418307-8418326 | MS.gene069302:CDS | 35.0% | |
TATTTGCTCCTATCGAATGT+GGG | + | chr3.3:8418621-8418640 | MS.gene069302:intron | 35.0% | |
TGAACTAACTTCCTTATCAG+GGG | - | chr3.3:8417369-8417388 | None:intergenic | 35.0% | |
TGAGATTCAACTTGAACTTG+AGG | - | chr3.3:8419576-8419595 | None:intergenic | 35.0% | |
TGGACTGCAATTTATAACCA+TGG | + | chr3.3:8417819-8417838 | MS.gene069302:intron | 35.0% | |
TTTCCGTAATATCGCTGAAT+AGG | - | chr3.3:8417963-8417982 | None:intergenic | 35.0% | |
!! | CAACAAAGGATTAGCTTCTT+TGG | - | chr3.3:8418185-8418204 | None:intergenic | 35.0% |
!! | GTAGAAAGTCCATTTGTTGT+CGG | + | chr3.3:8417986-8418005 | MS.gene069302:intron | 35.0% |
!!! | AGCATGGTTTTAAATTGTGG+TGG | + | chr3.3:8417686-8417705 | MS.gene069302:intron | 35.0% |
!!! | ATGGTTTTAAATTGTGGTGG+CGG | + | chr3.3:8417689-8417708 | MS.gene069302:intron | 35.0% |
!!! | GTTGTTTTTGTAAGCTCTCT+TGG | + | chr3.3:8418872-8418891 | MS.gene069302:intron | 35.0% |
AAATCTTCCCCACATTCGAT+AGG | - | chr3.3:8418632-8418651 | None:intergenic | 40.0% | |
ACCTACATCACCATCAACAA+AGG | - | chr3.3:8418199-8418218 | None:intergenic | 40.0% | |
AGATAGACACCGACAACAAA+TGG | - | chr3.3:8417998-8418017 | None:intergenic | 40.0% | |
AGATGATGATAGAACCGTCT+CGG | - | chr3.3:8419484-8419503 | None:intergenic | 40.0% | |
AGCAAAGCATAACAGCTACT+TGG | - | chr3.3:8417560-8417579 | None:intergenic | 40.0% | |
ATTTGCTCCTATCGAATGTG+GGG | + | chr3.3:8418622-8418641 | MS.gene069302:intron | 40.0% | |
GAGGAGAAGACAAAAGTAGT+AGG | + | chr3.3:8418247-8418266 | MS.gene069302:CDS | 40.0% | |
GCTATAAGTTCAGGAACATC+TGG | + | chr3.3:8419171-8419190 | MS.gene069302:CDS | 40.0% | |
GTCCAAAAAGTCGAATACTC+CGG | + | chr3.3:8419309-8419328 | MS.gene069302:CDS | 40.0% | |
TCATCGATACTTCTACAGGT+TGG | + | chr3.3:8419267-8419286 | MS.gene069302:CDS | 40.0% | |
TCCAAAAAGTCGAATACTCC+GGG | + | chr3.3:8419310-8419329 | MS.gene069302:CDS | 40.0% | |
TTCTGAGTCTGATTGCAATG+AGG | + | chr3.3:8417334-8417353 | MS.gene069302:CDS | 40.0% | |
TTGGACAGGCTATGTTGAAA+AGG | + | chr3.3:8418297-8418316 | MS.gene069302:CDS | 40.0% | |
! | AACTTCTGCAGGAGAGTTTT+CGG | - | chr3.3:8419553-8419572 | None:intergenic | 40.0% |
! | AGATAATGATGTACCGGTCT+CGG | - | chr3.3:8419523-8419542 | None:intergenic | 40.0% |
! | TATTCGACTTTTTGGACCTG+AGG | - | chr3.3:8419306-8419325 | None:intergenic | 40.0% |
! | TGATGATGATAGCTCTGTCT+CGG | - | chr3.3:8419403-8419422 | None:intergenic | 40.0% |
! | TGTTGAAAAGGCACATGTGT+TGG | - | chr3.3:8417246-8417265 | None:intergenic | 40.0% |
!! | ACATCTGGTTCTTCTTCTGA+TGG | + | chr3.3:8419186-8419205 | MS.gene069302:CDS | 40.0% |
!! | GCAGAAAGTGCTATAAGTTC+AGG | + | chr3.3:8419162-8419181 | MS.gene069302:CDS | 40.0% |
!! | TCCTTTGTTGATGGTGATGT+AGG | + | chr3.3:8418195-8418214 | MS.gene069302:intron | 40.0% |
!! | TGTTGATGGTGATGTAGGTT+GGG | + | chr3.3:8418200-8418219 | MS.gene069302:intron | 40.0% |
!! | TTGTTGATGGTGATGTAGGT+TGG | + | chr3.3:8418199-8418218 | MS.gene069302:intron | 40.0% |
ACTACTACAACTGCAGTCCA+TGG | - | chr3.3:8417839-8417858 | None:intergenic | 45.0% | |
AGATACGATGTCCACACTTG+AGG | - | chr3.3:8419613-8419632 | None:intergenic | 45.0% | |
AGCATGACTTTGTGCCTGTT+TGG | - | chr3.3:8419009-8419028 | None:intergenic | 45.0% | |
AGTATAGCCACTTGCGAAAC+TGG | - | chr3.3:8418961-8418980 | None:intergenic | 45.0% | |
AGTTGAGGAAAAATGGAGGG+AGG | + | chr3.3:8418565-8418584 | MS.gene069302:intron | 45.0% | |
CTTTCTGCCACATAAACTGC+TGG | - | chr3.3:8419150-8419169 | None:intergenic | 45.0% | |
GAATGTGGGGAAGATTTGCA+TGG | + | chr3.3:8418635-8418654 | MS.gene069302:intron | 45.0% | |
GAGTATGGAATGGTTAGCAG+AGG | + | chr3.3:8418228-8418247 | MS.gene069302:CDS | 45.0% | |
GGCATCATCGATACTTCTAC+AGG | + | chr3.3:8419263-8419282 | MS.gene069302:CDS | 45.0% | |
GTAGTAACTAAGTGATGGCC+CGG | - | chr3.3:8419331-8419350 | None:intergenic | 45.0% | |
GTTGAGGAAAAATGGAGGGA+GGG | + | chr3.3:8418566-8418585 | MS.gene069302:intron | 45.0% | |
TGAACTTGAGGAACTTCTGC+AGG | - | chr3.3:8419564-8419583 | None:intergenic | 45.0% | |
TGGTAAGAATTCTCCTCCTC+AGG | + | chr3.3:8419287-8419306 | MS.gene069302:CDS | 45.0% | |
TGTGACTGCATTTGCGATTG+TGG | + | chr3.3:8417799-8417818 | MS.gene069302:intron | 45.0% | |
TTGAGGAAAAATGGAGGGAG+GGG | + | chr3.3:8418567-8418586 | MS.gene069302:intron | 45.0% | |
TTGGGAAGGTGAGTATGGAA+TGG | + | chr3.3:8418218-8418237 | MS.gene069302:CDS | 45.0% | |
TTGTAAGCTCTCTTGGTCCT+TGG | + | chr3.3:8418879-8418898 | MS.gene069302:intron | 45.0% | |
TTTCCAGCCAGCAGTTTATG+TGG | + | chr3.3:8419140-8419159 | MS.gene069302:intron | 45.0% | |
! | CATAAACTGCTGGCTGGAAA+AGG | - | chr3.3:8419140-8419159 | None:intergenic | 45.0% |
!! | GGCACATGTGTTGGTTGTTA+TGG | - | chr3.3:8417237-8417256 | None:intergenic | 45.0% |
!! | TAGAAGTATCGATGATGCCG+CGG | - | chr3.3:8419262-8419281 | None:intergenic | 45.0% |
AACACAGCAGCAATTGCTGG+TGG | + | chr3.3:8419216-8419235 | MS.gene069302:CDS | 50.0% | |
ATATCCACCACGTCGTAAGC+AGG | + | chr3.3:8418273-8418292 | MS.gene069302:CDS | 50.0% | |
ATGTCCACACTTGAGGTCTC+TGG | - | chr3.3:8419606-8419625 | None:intergenic | 50.0% | |
CAGAACACAGCAGCAATTGC+TGG | + | chr3.3:8419213-8419232 | MS.gene069302:CDS | 50.0% | |
CTCTCAACCAGTTTCGCAAG+TGG | + | chr3.3:8418951-8418970 | MS.gene069302:intron | 50.0% | |
GGAAGAATGTGCCCCTGATA+AGG | + | chr3.3:8417355-8417374 | MS.gene069302:CDS | 50.0% | |
TATCCACCACGTCGTAAGCA+GGG | + | chr3.3:8418274-8418293 | MS.gene069302:CDS | 50.0% | |
TGTGGGGAAGATTTGCATGG+TGG | + | chr3.3:8418638-8418657 | MS.gene069302:intron | 50.0% | |
TGTGGTTGCAATGTCGTTGC+AGG | + | chr3.3:8417757-8417776 | MS.gene069302:intron | 50.0% | |
! | GATGGTGATGTAGGTTGGGA+AGG | + | chr3.3:8418204-8418223 | MS.gene069302:intron | 50.0% |
! | GTAGGTTGGGAAGGTGAGTA+TGG | + | chr3.3:8418213-8418232 | MS.gene069302:intron | 50.0% |
! | TCGACTTTTTGGACCTGAGG+AGG | - | chr3.3:8419303-8419322 | None:intergenic | 50.0% |
! | TGCACTGATCTCAATTGCCG+CGG | + | chr3.3:8419242-8419261 | MS.gene069302:CDS | 50.0% |
!! | GCCCGGAGTATTCGACTTTT+TGG | - | chr3.3:8419314-8419333 | None:intergenic | 50.0% |
!! | TCAACCTGAGAGCACTGAGA+CGG | + | chr3.3:8419428-8419447 | MS.gene069302:CDS | 50.0% |
AAATGGAGGGAGGGGACTCA+TGG | + | chr3.3:8418575-8418594 | MS.gene069302:intron | 55.0% | |
AGTACCGTCTCAGTGCTCTC+AGG | - | chr3.3:8419435-8419454 | None:intergenic | 55.0% | |
CTGCCACATAAACTGCTGGC+TGG | - | chr3.3:8419146-8419165 | None:intergenic | 55.0% | |
GGGGAAGATTTGCATGGTGG+AGG | + | chr3.3:8418641-8418660 | MS.gene069302:intron | 55.0% | |
TCAGCCAGAGACCTCAAGTG+TGG | + | chr3.3:8419599-8419618 | MS.gene069302:CDS | 55.0% | |
! | TAGCTCTGTCTCGGCTGTCA+CGG | - | chr3.3:8419394-8419413 | None:intergenic | 55.0% |
!! | TAGAACCGTCTCGGTGCTCT+CGG | - | chr3.3:8419475-8419494 | None:intergenic | 55.0% |
CAACCCTGCTTACGACGTGG+TGG | - | chr3.3:8418280-8418299 | None:intergenic | 60.0% | |
CACCACGTCGTAAGCAGGGT+TGG | + | chr3.3:8418278-8418297 | MS.gene069302:CDS | 60.0% | |
CGTCGTAAGCAGGGTTGGAC+AGG | + | chr3.3:8418283-8418302 | MS.gene069302:CDS | 60.0% | |
GTCCAACCCTGCTTACGACG+TGG | - | chr3.3:8418283-8418302 | None:intergenic | 60.0% | |
!! | AGAACCGTCTCGGTGCTCTC+GGG | - | chr3.3:8419474-8419493 | None:intergenic | 60.0% |
!! | TCAACCCGAGAGCACCGAGA+CGG | + | chr3.3:8419467-8419486 | MS.gene069302:CDS | 60.0% |
!! | TGTACCGGTCTCGGTGCTCT+CGG | - | chr3.3:8419514-8419533 | None:intergenic | 60.0% |
TCTGTCTCGGCTGTCACGGC+AGG | - | chr3.3:8419390-8419409 | None:intergenic | 65.0% | |
!! | CAACCCGAGAGCACCGAGAC+CGG | + | chr3.3:8419468-8419487 | MS.gene069302:CDS | 65.0% |
!! | GTACCGGTCTCGGTGCTCTC+GGG | - | chr3.3:8419513-8419532 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 8417212 | 8419635 | 8417212 | ID=MS.gene069302 |
chr3.3 | mRNA | 8417212 | 8419635 | 8417212 | ID=MS.gene069302.t1;Parent=MS.gene069302 |
chr3.3 | exon | 8417212 | 8417379 | 8417212 | ID=MS.gene069302.t1.exon1;Parent=MS.gene069302.t1 |
chr3.3 | CDS | 8417212 | 8417379 | 8417212 | ID=cds.MS.gene069302.t1;Parent=MS.gene069302.t1 |
chr3.3 | exon | 8418217 | 8418354 | 8418217 | ID=MS.gene069302.t1.exon2;Parent=MS.gene069302.t1 |
chr3.3 | CDS | 8418217 | 8418354 | 8418217 | ID=cds.MS.gene069302.t1;Parent=MS.gene069302.t1 |
chr3.3 | exon | 8419147 | 8419635 | 8419147 | ID=MS.gene069302.t1.exon3;Parent=MS.gene069302.t1 |
chr3.3 | CDS | 8419147 | 8419635 | 8419147 | ID=cds.MS.gene069302.t1;Parent=MS.gene069302.t1 |
Gene Sequence |
Protein sequence |