Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33187.t1 | XP_003588785.1 | 98 | 151 | 3 | 0 | 1 | 151 | 1 | 151 | 1.10E-42 | 183 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33187.t1 | Q39176 | 69.7 | 76 | 22 | 1 | 77 | 151 | 93 | 168 | 3.6e-23 | 109.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33187.t1 | G7I725 | 98.0 | 151 | 3 | 0 | 1 | 151 | 1 | 151 | 7.7e-43 | 183.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene33187 | 0.824981 | 6.01E-54 | -1.69E-46 |
| MS.gene049217 | MS.gene33187 | 0.870108 | 1.87E-66 | -1.69E-46 |
| MS.gene049222 | MS.gene33187 | 0.813466 | 2.52E-51 | -1.69E-46 |
| MS.gene049285 | MS.gene33187 | 0.837234 | 5.86E-57 | -1.69E-46 |
| MS.gene049320 | MS.gene33187 | 0.83315 | 6.29E-56 | -1.69E-46 |
| MS.gene049356 | MS.gene33187 | 0.806096 | 9.71E-50 | -1.69E-46 |
| MS.gene049369 | MS.gene33187 | 0.849916 | 2.38E-60 | -1.69E-46 |
| MS.gene049396 | MS.gene33187 | 0.805341 | 1.40E-49 | -1.69E-46 |
| MS.gene049427 | MS.gene33187 | 0.835524 | 1.60E-56 | -1.69E-46 |
| MS.gene049491 | MS.gene33187 | 0.803383 | 3.58E-49 | -1.69E-46 |
| MS.gene049609 | MS.gene33187 | 0.808707 | 2.71E-50 | -1.69E-46 |
| MS.gene049661 | MS.gene33187 | 0.801406 | 9.14E-49 | -1.69E-46 |
| MS.gene049805 | MS.gene33187 | 0.862702 | 4.20E-64 | -1.69E-46 |
| MS.gene049907 | MS.gene33187 | 0.81457 | 1.44E-51 | -1.69E-46 |
| MS.gene050076 | MS.gene33187 | 0.811402 | 7.13E-51 | -1.69E-46 |
| MS.gene050163 | MS.gene33187 | 0.825386 | 4.82E-54 | -1.69E-46 |
| MS.gene050165 | MS.gene33187 | 0.807551 | 4.78E-50 | -1.69E-46 |
| MS.gene050333 | MS.gene33187 | 0.809974 | 1.45E-50 | -1.69E-46 |
| MS.gene050432 | MS.gene33187 | 0.852707 | 3.87E-61 | -1.69E-46 |
| MS.gene050518 | MS.gene33187 | 0.806539 | 7.83E-50 | -1.69E-46 |
| MS.gene050593 | MS.gene33187 | 0.833634 | 4.77E-56 | -1.69E-46 |
| MS.gene050662 | MS.gene33187 | 0.811526 | 6.70E-51 | -1.69E-46 |
| MS.gene050670 | MS.gene33187 | 0.820653 | 6.12E-53 | -1.69E-46 |
| MS.gene050686 | MS.gene33187 | 0.865028 | 7.94E-65 | -1.69E-46 |
| MS.gene050747 | MS.gene33187 | 0.800713 | 1.27E-48 | -1.69E-46 |
| MS.gene050767 | MS.gene33187 | 0.856873 | 2.40E-62 | -1.69E-46 |
| MS.gene050770 | MS.gene33187 | 0.858596 | 7.39E-63 | -1.69E-46 |
| MS.gene050772 | MS.gene33187 | 0.844828 | 5.94E-59 | -1.69E-46 |
| MS.gene05100 | MS.gene33187 | 0.8008 | 1.22E-48 | -1.69E-46 |
| MS.gene05105 | MS.gene33187 | 0.816628 | 5.01E-52 | -1.69E-46 |
| MS.gene051167 | MS.gene33187 | -0.816662 | 4.93E-52 | -1.69E-46 |
| MS.gene051228 | MS.gene33187 | 0.833982 | 3.90E-56 | -1.69E-46 |
| MS.gene051387 | MS.gene33187 | 0.831801 | 1.36E-55 | -1.69E-46 |
| MS.gene051666 | MS.gene33187 | 0.851265 | 9.93E-61 | -1.69E-46 |
| MS.gene051692 | MS.gene33187 | 0.855465 | 6.19E-62 | -1.69E-46 |
| MS.gene051694 | MS.gene33187 | 0.815728 | 7.97E-52 | -1.69E-46 |
| MS.gene051810 | MS.gene33187 | 0.811029 | 8.59E-51 | -1.69E-46 |
| MS.gene051858 | MS.gene33187 | 0.833191 | 6.15E-56 | -1.69E-46 |
| MS.gene051874 | MS.gene33187 | 0.819033 | 1.44E-52 | -1.69E-46 |
| MS.gene051877 | MS.gene33187 | 0.82354 | 1.31E-53 | -1.69E-46 |
| MS.gene052188 | MS.gene33187 | 0.80859 | 2.87E-50 | -1.69E-46 |
| MS.gene052271 | MS.gene33187 | 0.878385 | 2.93E-69 | -1.69E-46 |
| MS.gene052290 | MS.gene33187 | 0.821977 | 3.03E-53 | -1.69E-46 |
| MS.gene052310 | MS.gene33187 | 0.824841 | 6.49E-54 | -1.69E-46 |
| MS.gene052326 | MS.gene33187 | 0.80611 | 9.65E-50 | -1.69E-46 |
| MS.gene052379 | MS.gene33187 | 0.856727 | 2.64E-62 | -1.69E-46 |
| MS.gene052421 | MS.gene33187 | 0.84731 | 1.25E-59 | -1.69E-46 |
| MS.gene052481 | MS.gene33187 | 0.80179 | 7.62E-49 | -1.69E-46 |
| MS.gene052484 | MS.gene33187 | 0.823967 | 1.04E-53 | -1.69E-46 |
| MS.gene052485 | MS.gene33187 | 0.830623 | 2.65E-55 | -1.69E-46 |
| MS.gene052615 | MS.gene33187 | 0.819715 | 1.00E-52 | -1.69E-46 |
| MS.gene052916 | MS.gene33187 | 0.801387 | 9.23E-49 | -1.69E-46 |
| MS.gene053009 | MS.gene33187 | 0.81507 | 1.12E-51 | -1.69E-46 |
| MS.gene053103 | MS.gene33187 | 0.825457 | 4.64E-54 | -1.69E-46 |
| MS.gene053104 | MS.gene33187 | 0.848963 | 4.38E-60 | -1.69E-46 |
| MS.gene053207 | MS.gene33187 | 0.803044 | 4.21E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene33187 | 0.843714 | 1.18E-58 | -1.69E-46 |
| MS.gene053286 | MS.gene33187 | 0.837935 | 3.88E-57 | -1.69E-46 |
| MS.gene053322 | MS.gene33187 | 0.875319 | 3.38E-68 | -1.69E-46 |
| MS.gene053384 | MS.gene33187 | 0.80353 | 3.34E-49 | -1.69E-46 |
| MS.gene053449 | MS.gene33187 | 0.83633 | 9.97E-57 | -1.69E-46 |
| MS.gene053574 | MS.gene33187 | 0.818057 | 2.39E-52 | -1.69E-46 |
| MS.gene053632 | MS.gene33187 | 0.842887 | 1.97E-58 | -1.69E-46 |
| MS.gene053813 | MS.gene33187 | 0.882244 | 1.23E-70 | -1.69E-46 |
| MS.gene053916 | MS.gene33187 | 0.839967 | 1.15E-57 | -1.69E-46 |
| MS.gene054003 | MS.gene33187 | 0.812392 | 4.34E-51 | -1.69E-46 |
| MS.gene054123 | MS.gene33187 | 0.809031 | 2.31E-50 | -1.69E-46 |
| MS.gene054376 | MS.gene33187 | 0.839391 | 1.63E-57 | -1.69E-46 |
| MS.gene054543 | MS.gene33187 | 0.839178 | 1.85E-57 | -1.69E-46 |
| MS.gene054642 | MS.gene33187 | 0.856638 | 2.81E-62 | -1.69E-46 |
| MS.gene054802 | MS.gene33187 | 0.843474 | 1.37E-58 | -1.69E-46 |
| MS.gene054803 | MS.gene33187 | 0.843313 | 1.51E-58 | -1.69E-46 |
| MS.gene054804 | MS.gene33187 | 0.846484 | 2.11E-59 | -1.69E-46 |
| MS.gene054955 | MS.gene33187 | 0.836206 | 1.07E-56 | -1.69E-46 |
| MS.gene05505 | MS.gene33187 | 0.870461 | 1.43E-66 | -1.69E-46 |
| MS.gene055206 | MS.gene33187 | 0.811212 | 7.84E-51 | -1.69E-46 |
| MS.gene055224 | MS.gene33187 | 0.800717 | 1.26E-48 | -1.69E-46 |
| MS.gene055277 | MS.gene33187 | 0.813161 | 2.95E-51 | -1.69E-46 |
| MS.gene055362 | MS.gene33187 | 0.805872 | 1.08E-49 | -1.69E-46 |
| MS.gene055397 | MS.gene33187 | 0.869184 | 3.74E-66 | -1.69E-46 |
| MS.gene055412 | MS.gene33187 | 0.804686 | 1.92E-49 | -1.69E-46 |
| MS.gene055499 | MS.gene33187 | 0.82836 | 9.39E-55 | -1.69E-46 |
| MS.gene055502 | MS.gene33187 | 0.819776 | 9.72E-53 | -1.69E-46 |
| MS.gene055533 | MS.gene33187 | 0.838205 | 3.30E-57 | -1.69E-46 |
| MS.gene055577 | MS.gene33187 | 0.800134 | 1.66E-48 | -1.69E-46 |
| MS.gene055636 | MS.gene33187 | 0.829456 | 5.10E-55 | -1.69E-46 |
| MS.gene055638 | MS.gene33187 | 0.820649 | 6.14E-53 | -1.69E-46 |
| MS.gene055647 | MS.gene33187 | 0.867873 | 9.93E-66 | -1.69E-46 |
| MS.gene055722 | MS.gene33187 | 0.842107 | 3.16E-58 | -1.69E-46 |
| MS.gene055896 | MS.gene33187 | 0.807874 | 4.08E-50 | -1.69E-46 |
| MS.gene055909 | MS.gene33187 | 0.809297 | 2.03E-50 | -1.69E-46 |
| MS.gene055911 | MS.gene33187 | 0.810737 | 9.93E-51 | -1.69E-46 |
| MS.gene05592 | MS.gene33187 | 0.884595 | 1.68E-71 | -1.69E-46 |
| MS.gene055941 | MS.gene33187 | 0.840148 | 1.04E-57 | -1.69E-46 |
| MS.gene056191 | MS.gene33187 | 0.802597 | 5.20E-49 | -1.69E-46 |
| MS.gene056374 | MS.gene33187 | 0.855532 | 5.92E-62 | -1.69E-46 |
| MS.gene056407 | MS.gene33187 | 0.810239 | 1.27E-50 | -1.69E-46 |
| MS.gene056422 | MS.gene33187 | 0.84091 | 6.54E-58 | -1.69E-46 |
| MS.gene056487 | MS.gene33187 | 0.812061 | 5.12E-51 | -1.69E-46 |
| MS.gene056511 | MS.gene33187 | 0.84295 | 1.89E-58 | -1.69E-46 |
| MS.gene056549 | MS.gene33187 | 0.818873 | 1.56E-52 | -1.69E-46 |
| MS.gene056609 | MS.gene33187 | 0.81711 | 3.91E-52 | -1.69E-46 |
| MS.gene05664 | MS.gene33187 | 0.802408 | 5.69E-49 | -1.69E-46 |
| MS.gene056657 | MS.gene33187 | 0.846821 | 1.71E-59 | -1.69E-46 |
| MS.gene05666 | MS.gene33187 | 0.803716 | 3.05E-49 | -1.69E-46 |
| MS.gene056942 | MS.gene33187 | 0.803376 | 3.59E-49 | -1.69E-46 |
| MS.gene057011 | MS.gene33187 | 0.838899 | 2.19E-57 | -1.69E-46 |
| MS.gene057076 | MS.gene33187 | 0.825466 | 4.62E-54 | -1.69E-46 |
| MS.gene057123 | MS.gene33187 | 0.830802 | 2.39E-55 | -1.69E-46 |
| MS.gene057129 | MS.gene33187 | 0.87481 | 5.05E-68 | -1.69E-46 |
| MS.gene057146 | MS.gene33187 | 0.869041 | 4.17E-66 | -1.69E-46 |
| MS.gene057285 | MS.gene33187 | 0.838201 | 3.31E-57 | -1.69E-46 |
| MS.gene057295 | MS.gene33187 | 0.802947 | 4.40E-49 | -1.69E-46 |
| MS.gene057331 | MS.gene33187 | 0.822616 | 2.15E-53 | -1.69E-46 |
| MS.gene05735 | MS.gene33187 | 0.847684 | 9.90E-60 | -1.69E-46 |
| MS.gene057416 | MS.gene33187 | 0.870849 | 1.07E-66 | -1.69E-46 |
| MS.gene057734 | MS.gene33187 | 0.827931 | 1.19E-54 | -1.69E-46 |
| MS.gene057856 | MS.gene33187 | 0.805655 | 1.20E-49 | -1.69E-46 |
| MS.gene057926 | MS.gene33187 | 0.882445 | 1.04E-70 | -1.69E-46 |
| MS.gene057927 | MS.gene33187 | 0.827287 | 1.70E-54 | -1.69E-46 |
| MS.gene058006 | MS.gene33187 | 0.822229 | 2.65E-53 | -1.69E-46 |
| MS.gene058019 | MS.gene33187 | 0.851223 | 1.02E-60 | -1.69E-46 |
| MS.gene058293 | MS.gene33187 | 0.844536 | 7.11E-59 | -1.69E-46 |
| MS.gene058323 | MS.gene33187 | 0.831704 | 1.44E-55 | -1.69E-46 |
| MS.gene058419 | MS.gene33187 | 0.844965 | 5.45E-59 | -1.69E-46 |
| MS.gene058459 | MS.gene33187 | 0.804435 | 2.16E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene33187 | 0.864075 | 1.58E-64 | -1.69E-46 |
| MS.gene058928 | MS.gene33187 | 0.804274 | 2.34E-49 | -1.69E-46 |
| MS.gene059029 | MS.gene33187 | 0.801886 | 7.29E-49 | -1.69E-46 |
| MS.gene05913 | MS.gene33187 | 0.807618 | 4.63E-50 | -1.69E-46 |
| MS.gene05934 | MS.gene33187 | 0.844035 | 9.70E-59 | -1.69E-46 |
| MS.gene059367 | MS.gene33187 | 0.810353 | 1.20E-50 | -1.69E-46 |
| MS.gene059368 | MS.gene33187 | 0.826175 | 3.13E-54 | -1.69E-46 |
| MS.gene059536 | MS.gene33187 | 0.856062 | 4.15E-62 | -1.69E-46 |
| MS.gene059597 | MS.gene33187 | 0.802774 | 4.78E-49 | -1.69E-46 |
| MS.gene059676 | MS.gene33187 | 0.830634 | 2.63E-55 | -1.69E-46 |
| MS.gene059677 | MS.gene33187 | 0.809023 | 2.32E-50 | -1.69E-46 |
| MS.gene059688 | MS.gene33187 | 0.854013 | 1.63E-61 | -1.69E-46 |
| MS.gene059692 | MS.gene33187 | 0.841771 | 3.88E-58 | -1.69E-46 |
| MS.gene059695 | MS.gene33187 | 0.842083 | 3.21E-58 | -1.69E-46 |
| MS.gene059711 | MS.gene33187 | 0.858087 | 1.05E-62 | -1.69E-46 |
| MS.gene059718 | MS.gene33187 | 0.820236 | 7.63E-53 | -1.69E-46 |
| MS.gene059807 | MS.gene33187 | 0.806936 | 6.46E-50 | -1.69E-46 |
| MS.gene059902 | MS.gene33187 | 0.826161 | 3.16E-54 | -1.69E-46 |
| MS.gene059960 | MS.gene33187 | 0.859608 | 3.68E-63 | -1.69E-46 |
| MS.gene060193 | MS.gene33187 | 0.858169 | 9.90E-63 | -1.69E-46 |
| MS.gene060403 | MS.gene33187 | 0.813897 | 2.03E-51 | -1.69E-46 |
| MS.gene060482 | MS.gene33187 | 0.821363 | 4.20E-53 | -1.69E-46 |
| MS.gene060804 | MS.gene33187 | 0.877755 | 4.87E-69 | -1.69E-46 |
| MS.gene060818 | MS.gene33187 | 0.872165 | 3.92E-67 | -1.69E-46 |
| MS.gene060835 | MS.gene33187 | 0.810801 | 9.62E-51 | -1.69E-46 |
| MS.gene060837 | MS.gene33187 | 0.856359 | 3.39E-62 | -1.69E-46 |
| MS.gene06092 | MS.gene33187 | 0.812954 | 3.27E-51 | -1.69E-46 |
| MS.gene061041 | MS.gene33187 | 0.852321 | 4.98E-61 | -1.69E-46 |
| MS.gene061051 | MS.gene33187 | -0.82885 | 7.15E-55 | -1.69E-46 |
| MS.gene061134 | MS.gene33187 | 0.853802 | 1.88E-61 | -1.69E-46 |
| MS.gene061150 | MS.gene33187 | 0.808052 | 3.74E-50 | -1.69E-46 |
| MS.gene061200 | MS.gene33187 | 0.897378 | 1.49E-76 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33187.t1 | MTR_1g012690 | 79.870 | 154 | 28 | 1 | 1 | 151 | 1 | 154 | 1.48e-72 | 214 |
| MS.gene33187.t1 | MTR_1g012700 | 73.780 | 164 | 30 | 1 | 1 | 151 | 1 | 164 | 2.56e-72 | 214 |
| MS.gene33187.t1 | MTR_1g012710 | 96.026 | 151 | 6 | 0 | 1 | 151 | 1 | 151 | 8.87e-69 | 205 |
| MS.gene33187.t1 | MTR_1g012630 | 54.630 | 216 | 27 | 4 | 1 | 151 | 1 | 210 | 3.01e-55 | 172 |
| MS.gene33187.t1 | MTR_3g106740 | 61.589 | 151 | 35 | 3 | 1 | 150 | 1 | 129 | 2.31e-46 | 147 |
| MS.gene33187.t1 | MTR_4g101330 | 46.429 | 168 | 72 | 3 | 1 | 150 | 1 | 168 | 1.29e-37 | 126 |
| MS.gene33187.t1 | MTR_3g106750 | 57.792 | 154 | 37 | 3 | 1 | 151 | 1 | 129 | 6.31e-36 | 121 |
| MS.gene33187.t1 | MTR_4g108150 | 55.556 | 108 | 40 | 2 | 47 | 151 | 21 | 123 | 2.06e-34 | 117 |
| MS.gene33187.t1 | MTR_4g101260 | 63.855 | 83 | 30 | 0 | 69 | 151 | 50 | 132 | 4.64e-33 | 114 |
| MS.gene33187.t1 | MTR_4g101280 | 63.636 | 88 | 31 | 1 | 65 | 151 | 56 | 143 | 6.04e-32 | 111 |
| MS.gene33187.t1 | MTR_4g101310 | 59.091 | 88 | 35 | 1 | 65 | 151 | 47 | 134 | 2.61e-31 | 109 |
| MS.gene33187.t1 | MTR_2g026760 | 55.556 | 90 | 39 | 1 | 62 | 151 | 39 | 127 | 8.60e-27 | 97.8 |
| MS.gene33187.t1 | MTR_5g012340 | 50.575 | 87 | 41 | 2 | 65 | 150 | 91 | 176 | 1.40e-25 | 96.3 |
| MS.gene33187.t1 | MTR_5g012380 | 49.425 | 87 | 42 | 2 | 65 | 150 | 84 | 169 | 4.72e-25 | 94.7 |
| MS.gene33187.t1 | MTR_4g101270 | 52.941 | 85 | 38 | 2 | 67 | 150 | 103 | 186 | 2.39e-23 | 90.9 |
| MS.gene33187.t1 | MTR_2g026930 | 44.706 | 85 | 43 | 2 | 67 | 151 | 119 | 199 | 8.93e-20 | 81.6 |
| MS.gene33187.t1 | MTR_2g026920 | 44.706 | 85 | 43 | 2 | 67 | 151 | 115 | 195 | 1.90e-19 | 80.9 |
| MS.gene33187.t1 | MTR_3g082100 | 52.326 | 86 | 39 | 2 | 66 | 150 | 251 | 335 | 1.21e-17 | 78.2 |
| MS.gene33187.t1 | MTR_2g026775 | 44.872 | 78 | 38 | 2 | 76 | 151 | 686 | 760 | 3.39e-17 | 77.8 |
| MS.gene33187.t1 | MTR_4g115360 | 53.571 | 84 | 37 | 2 | 69 | 151 | 151 | 233 | 4.42e-13 | 64.7 |
| MS.gene33187.t1 | MTR_2g026820 | 50.000 | 70 | 31 | 2 | 74 | 142 | 542 | 608 | 6.35e-13 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33187.t1 | AT4G12490 | 45.055 | 182 | 69 | 3 | 1 | 151 | 1 | 182 | 4.62e-42 | 138 |
| MS.gene33187.t1 | AT2G45180 | 75.904 | 83 | 20 | 0 | 69 | 151 | 52 | 134 | 1.95e-39 | 130 |
| MS.gene33187.t1 | AT4G12470 | 66.292 | 89 | 29 | 1 | 64 | 151 | 73 | 161 | 1.50e-36 | 123 |
| MS.gene33187.t1 | AT4G12480 | 67.045 | 88 | 28 | 1 | 65 | 151 | 81 | 168 | 1.10e-35 | 121 |
| MS.gene33187.t1 | AT4G12500 | 64.773 | 88 | 30 | 1 | 65 | 151 | 90 | 177 | 5.99e-35 | 120 |
| MS.gene33187.t1 | AT1G62510 | 66.667 | 84 | 27 | 1 | 68 | 150 | 66 | 149 | 5.23e-33 | 114 |
| MS.gene33187.t1 | AT4G00165 | 49.533 | 107 | 48 | 2 | 45 | 150 | 27 | 128 | 3.12e-31 | 109 |
| MS.gene33187.t1 | AT4G00165 | 49.533 | 107 | 48 | 2 | 45 | 150 | 27 | 128 | 3.12e-31 | 109 |
| MS.gene33187.t1 | AT4G12520 | 47.059 | 153 | 55 | 4 | 1 | 151 | 1 | 129 | 1.16e-30 | 107 |
| MS.gene33187.t1 | AT4G12510 | 47.059 | 153 | 55 | 4 | 1 | 151 | 1 | 129 | 1.16e-30 | 107 |
| MS.gene33187.t1 | AT1G12100 | 43.151 | 146 | 60 | 4 | 7 | 151 | 9 | 132 | 1.47e-30 | 107 |
| MS.gene33187.t1 | AT5G46890 | 61.957 | 92 | 32 | 2 | 60 | 151 | 39 | 127 | 3.21e-30 | 106 |
| MS.gene33187.t1 | AT1G12090 | 65.000 | 80 | 27 | 1 | 72 | 150 | 58 | 137 | 1.42e-29 | 105 |
| MS.gene33187.t1 | AT5G46900 | 66.250 | 80 | 25 | 1 | 72 | 151 | 50 | 127 | 4.04e-29 | 103 |
| MS.gene33187.t1 | AT3G22142 | 56.701 | 97 | 39 | 3 | 55 | 150 | 1384 | 1478 | 2.66e-27 | 106 |
| MS.gene33187.t1 | AT4G12550 | 49.451 | 91 | 45 | 1 | 62 | 151 | 21 | 111 | 6.15e-27 | 97.8 |
| MS.gene33187.t1 | AT4G22460 | 47.059 | 119 | 44 | 2 | 32 | 149 | 31 | 131 | 3.08e-26 | 96.7 |
| MS.gene33187.t1 | AT4G12530 | 50.588 | 85 | 42 | 0 | 66 | 150 | 31 | 115 | 1.08e-25 | 94.7 |
| MS.gene33187.t1 | AT4G12545 | 50.549 | 91 | 41 | 2 | 62 | 151 | 21 | 108 | 1.54e-24 | 91.7 |
| MS.gene33187.t1 | AT2G10940 | 57.143 | 84 | 34 | 2 | 69 | 151 | 208 | 290 | 3.58e-23 | 92.4 |
| MS.gene33187.t1 | AT2G10940 | 57.143 | 84 | 34 | 2 | 69 | 151 | 208 | 290 | 3.58e-23 | 92.4 |
| MS.gene33187.t1 | AT3G22120 | 56.977 | 86 | 34 | 3 | 67 | 150 | 265 | 349 | 3.19e-21 | 88.2 |
| MS.gene33187.t1 | AT3G22120 | 56.977 | 86 | 34 | 3 | 67 | 150 | 248 | 332 | 5.12e-21 | 87.4 |
| MS.gene33187.t1 | AT4G15160 | 52.326 | 86 | 39 | 2 | 67 | 150 | 97 | 182 | 2.90e-19 | 80.1 |
| MS.gene33187.t1 | AT4G15160 | 52.326 | 86 | 39 | 2 | 67 | 150 | 179 | 264 | 4.98e-19 | 81.3 |
| MS.gene33187.t1 | AT1G62500 | 48.193 | 83 | 41 | 2 | 69 | 150 | 212 | 293 | 8.39e-19 | 80.9 |
| MS.gene33187.t1 | AT4G22490 | 38.710 | 93 | 50 | 3 | 61 | 150 | 28 | 116 | 3.16e-15 | 67.8 |
Find 34 sgRNAs with CRISPR-Local
Find 39 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGAGAAAATAATATAATT+AGG | 0.201862 | 1.2:-8943352 | None:intergenic |
| TTGCCTTTGTACTGCTATTA+AGG | 0.221337 | 1.2:+8943664 | MS.gene33187:CDS |
| GCTATTAAGGCTAATGTTCT+TGG | 0.285703 | 1.2:+8943677 | MS.gene33187:CDS |
| GCTTCAAGGTTTGGTTGATT+TGG | 0.319262 | 1.2:+8943631 | MS.gene33187:CDS |
| CTAGGCTTTGGCTTTGGCTT+AGG | 0.338065 | 1.2:-8943434 | None:intergenic |
| TTTGGCTTTGGCTTAGGCTT+AGG | 0.367383 | 1.2:-8943428 | None:intergenic |
| GGAGGACTAGGCTTTGGCTT+TGG | 0.385876 | 1.2:-8943440 | None:intergenic |
| GCTGGTGGAGGACTAGGCTT+TGG | 0.388141 | 1.2:-8943446 | None:intergenic |
| GGTGTGTGTGCTGATGTTCT+AGG | 0.388503 | 1.2:+8943557 | MS.gene33187:CDS |
| GAGAGAAAATAATATAATTA+GGG | 0.389348 | 1.2:-8943351 | None:intergenic |
| GGACTTGTTAATATTATTGT+TGG | 0.394838 | 1.2:+8943578 | MS.gene33187:CDS |
| AAGTGTTGTGCATTGCTTCA+AGG | 0.409572 | 1.2:+8943617 | MS.gene33187:CDS |
| TTGTGCATTGCTTCAAGGTT+TGG | 0.410333 | 1.2:+8943622 | MS.gene33187:CDS |
| AATTAGGGCACTAAGCTTGT+TGG | 0.421182 | 1.2:-8943336 | None:intergenic |
| GGTGAAGCTGGTGGAGGACT+AGG | 0.427892 | 1.2:-8943452 | None:intergenic |
| GGACATGGTGTTGGTGAAGC+TGG | 0.438461 | 1.2:-8943464 | None:intergenic |
| AGTAGGAGACTGAGTGTGAT+AGG | 0.453246 | 1.2:-8943716 | None:intergenic |
| GGAGGTGTTGCTGAAGGTGT+TGG | 0.497717 | 1.2:-8943488 | None:intergenic |
| ACAATAAAGTCTATGAACAT+TGG | 0.508580 | 1.2:-8943772 | None:intergenic |
| GCTGAAGGTGTTGGAGGACA+TGG | 0.512621 | 1.2:-8943479 | None:intergenic |
| TGTGATGTTGAAGGAGTAGG+AGG | 0.527946 | 1.2:-8943506 | None:intergenic |
| TTAGGCTTAGGAGATGGAGT+TGG | 0.532997 | 1.2:-8943416 | None:intergenic |
| TTTGGCTTAGGCTTAGGAGA+TGG | 0.535668 | 1.2:-8943422 | None:intergenic |
| GCACAACACTTGCTAGAAGC+AGG | 0.549118 | 1.2:-8943605 | None:intergenic |
| GTGAAAATGTTGCATAAGCA+AGG | 0.554272 | 1.2:-8943373 | None:intergenic |
| CCTACTGACACATTAAAGCT+AGG | 0.564359 | 1.2:+8943536 | MS.gene33187:CDS |
| CATGGTGTTGGTGAAGCTGG+TGG | 0.586112 | 1.2:-8943461 | None:intergenic |
| GGAGTAGGAGGTGTTGCTGA+AGG | 0.590328 | 1.2:-8943494 | None:intergenic |
| GGTGTTGGAGGACATGGTGT+TGG | 0.594079 | 1.2:-8943473 | None:intergenic |
| GGTGTTGGTGAAGCTGGTGG+AGG | 0.615450 | 1.2:-8943458 | None:intergenic |
| CCTAGCTTTAATGTGTCAGT+AGG | 0.615781 | 1.2:-8943536 | None:intergenic |
| GGTGTTGCTGAAGGTGTTGG+AGG | 0.621506 | 1.2:-8943485 | None:intergenic |
| TAGCCTTAATAGCAGTACAA+AGG | 0.655083 | 1.2:-8943667 | None:intergenic |
| TATGAACATTGGAAACCCGA+AGG | 0.685560 | 1.2:-8943761 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAGAGAAAATAATATAATTA+GGG | - | chr1.2:8943354-8943373 | None:intergenic | 15.0% |
| !! | GGAGAGAAAATAATATAATT+AGG | - | chr1.2:8943355-8943374 | None:intergenic | 20.0% |
| !!! | GGACTTGTTAATATTATTGT+TGG | + | chr1.2:8943578-8943597 | MS.gene33187:CDS | 25.0% |
| TTGTGAAAAATCTGTTCCTT+CGG | + | chr1.2:8943745-8943764 | MS.gene33187:CDS | 30.0% | |
| ! | ATTTTTCACAAGCACTAAGT+AGG | - | chr1.2:8943736-8943755 | None:intergenic | 30.0% |
| GCTATTAAGGCTAATGTTCT+TGG | + | chr1.2:8943677-8943696 | MS.gene33187:CDS | 35.0% | |
| GTGAAAATGTTGCATAAGCA+AGG | - | chr1.2:8943376-8943395 | None:intergenic | 35.0% | |
| TGTGAAAAATCTGTTCCTTC+GGG | + | chr1.2:8943746-8943765 | MS.gene33187:CDS | 35.0% | |
| TTGCCTTTGTACTGCTATTA+AGG | + | chr1.2:8943664-8943683 | MS.gene33187:CDS | 35.0% | |
| ! | GGACATTTTTGTGATGTTGA+AGG | - | chr1.2:8943518-8943537 | None:intergenic | 35.0% |
| ! | TAGCCTTAATAGCAGTACAA+AGG | - | chr1.2:8943670-8943689 | None:intergenic | 35.0% |
| ! | TTTTGTGATGTTGAAGGAGT+AGG | - | chr1.2:8943512-8943531 | None:intergenic | 35.0% |
| CCTACTGACACATTAAAGCT+AGG | + | chr1.2:8943536-8943555 | MS.gene33187:CDS | 40.0% | |
| TATGAACATTGGAAACCCGA+AGG | - | chr1.2:8943764-8943783 | None:intergenic | 40.0% | |
| TTGTGCATTGCTTCAAGGTT+TGG | + | chr1.2:8943622-8943641 | MS.gene33187:CDS | 40.0% | |
| ! | AAGTGTTGTGCATTGCTTCA+AGG | + | chr1.2:8943617-8943636 | MS.gene33187:CDS | 40.0% |
| ! | AATTAGGGCACTAAGCTTGT+TGG | - | chr1.2:8943339-8943358 | None:intergenic | 40.0% |
| ! | GCAACATTTTCACATGCTTG+TGG | + | chr1.2:8943383-8943402 | MS.gene33187:CDS | 40.0% |
| ! | GCTTCAAGGTTTGGTTGATT+TGG | + | chr1.2:8943631-8943650 | MS.gene33187:CDS | 40.0% |
| !! | CCTAGCTTTAATGTGTCAGT+AGG | - | chr1.2:8943539-8943558 | None:intergenic | 40.0% |
| AGTAGGAGACTGAGTGTGAT+AGG | - | chr1.2:8943719-8943738 | None:intergenic | 45.0% | |
| TGTGATGTTGAAGGAGTAGG+AGG | - | chr1.2:8943509-8943528 | None:intergenic | 45.0% | |
| TTAGGCTTAGGAGATGGAGT+TGG | - | chr1.2:8943419-8943438 | None:intergenic | 45.0% | |
| ! | TTTGGCTTAGGCTTAGGAGA+TGG | - | chr1.2:8943425-8943444 | None:intergenic | 45.0% |
| !! | TTTGGCTTTGGCTTAGGCTT+AGG | - | chr1.2:8943431-8943450 | None:intergenic | 45.0% |
| ! | GCACAACACTTGCTAGAAGC+AGG | - | chr1.2:8943608-8943627 | None:intergenic | 50.0% |
| ! | GGTGTGTGTGCTGATGTTCT+AGG | + | chr1.2:8943557-8943576 | MS.gene33187:CDS | 50.0% |
| !! | CTAGGCTTTGGCTTTGGCTT+AGG | - | chr1.2:8943437-8943456 | None:intergenic | 50.0% |
| ! | GGAGGACTAGGCTTTGGCTT+TGG | - | chr1.2:8943443-8943462 | None:intergenic | 55.0% |
| ! | GGTGTTGGAGGACATGGTGT+TGG | - | chr1.2:8943476-8943495 | None:intergenic | 55.0% |
| !! | CATGGTGTTGGTGAAGCTGG+TGG | - | chr1.2:8943464-8943483 | None:intergenic | 55.0% |
| !! | GCTGAAGGTGTTGGAGGACA+TGG | - | chr1.2:8943482-8943501 | None:intergenic | 55.0% |
| !! | GGACATGGTGTTGGTGAAGC+TGG | - | chr1.2:8943467-8943486 | None:intergenic | 55.0% |
| !! | GGAGGTGTTGCTGAAGGTGT+TGG | - | chr1.2:8943491-8943510 | None:intergenic | 55.0% |
| !! | GGAGTAGGAGGTGTTGCTGA+AGG | - | chr1.2:8943497-8943516 | None:intergenic | 55.0% |
| !! | GGTGTTGCTGAAGGTGTTGG+AGG | - | chr1.2:8943488-8943507 | None:intergenic | 55.0% |
| GCTGGTGGAGGACTAGGCTT+TGG | - | chr1.2:8943449-8943468 | None:intergenic | 60.0% | |
| GGTGAAGCTGGTGGAGGACT+AGG | - | chr1.2:8943455-8943474 | None:intergenic | 60.0% | |
| !! | GGTGTTGGTGAAGCTGGTGG+AGG | - | chr1.2:8943461-8943480 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 8943329 | 8943784 | 8943329 | ID=MS.gene33187 |
| chr1.2 | mRNA | 8943329 | 8943784 | 8943329 | ID=MS.gene33187.t1;Parent=MS.gene33187 |
| chr1.2 | exon | 8943329 | 8943784 | 8943329 | ID=MS.gene33187.t1.exon1;Parent=MS.gene33187.t1 |
| chr1.2 | CDS | 8943329 | 8943784 | 8943329 | ID=cds.MS.gene33187.t1;Parent=MS.gene33187.t1 |
| Gene Sequence |
| Protein sequence |
