AlfalfaGEDB | MS.gene068138

M. sativa cultivar XinJiangDaYe / MS.gene068138

KEGG: -
GO: -
PFAM: PF09366.13

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068138.t1	XP_003590247.2	91.1	246	2	1	1	246	1	226	6.40E-114	420.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068138.t1	G7I7C8	91.1	246	2	1	1	246	1	226	4.6e-114	420.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene068138	0.826771	2.26E-54	-1.69E-46
MS.gene049171	MS.gene068138	0.888986	3.63E-73	-1.69E-46
MS.gene049173	MS.gene068138	0.816934	4.28E-52	-1.69E-46
MS.gene049217	MS.gene068138	0.881939	1.58E-70	-1.69E-46
MS.gene049222	MS.gene068138	0.906674	1.15E-80	-1.69E-46
MS.gene049232	MS.gene068138	0.864023	1.64E-64	-1.69E-46
MS.gene049281	MS.gene068138	-0.820264	7.52E-53	-1.69E-46
MS.gene049285	MS.gene068138	0.887686	1.15E-72	-1.69E-46
MS.gene049312	MS.gene068138	-0.800654	1.30E-48	-1.69E-46
MS.gene049313	MS.gene068138	-0.818673	1.73E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068138.t1	MTR_1g050530	91.057	246	2	1	1	246	1	226	1.52e-161	446
MS.gene068138.t1	MTR_1g050530	97.605	167	4	0	1	167	1	167	1.12e-117	333
MS.gene068138.t1	MTR_1g010080	24.155	207	136	6	12	203	25	225	5.53e-16	75.5
MS.gene068138.t1	MTR_1g010080	24.737	190	123	5	29	203	9	193	2.21e-15	73.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068138.t1	AT5G04440	70.423	213	43	1	34	246	63	255	5.16e-108	312
MS.gene068138.t1	AT5G04440	77.059	170	39	0	34	203	63	232	7.37e-96	281
MS.gene068138.t1	AT4G31115	28.161	174	113	4	34	198	54	224	2.27e-19	84.7
MS.gene068138.t1	AT4G31115	28.161	174	113	4	34	198	78	248	3.86e-19	84.3

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Find 62 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGGGCTTTGTGGGTCGA+AGG	0.589377	1.4:+36903398	None:intergenic
AAAGTAGGTACCTACCTTGC+AGG	0.389681	1.4:+36903047	None:intergenic
AAAGTTGAACAACAACCCAA+TGG	0.669566	1.4:-36903090	MS.gene068138:CDS
AACAAACCTGTGACATAAAA+CGG	0.350906	1.4:+36902182	None:intergenic
AACACTGAATATTGACTTGC+TGG	0.347727	1.4:+36903213	None:intergenic
AAGCAAGCAATTGAATCAGC+TGG	0.447176	1.4:-36902244	MS.gene068138:CDS
AAGGATTGAACGTGTGAGTG+AGG	0.702772	1.4:-36903181	MS.gene068138:CDS
AAGTGACTCAGATAAGTCAC+TGG	0.624597	1.4:-36902430	MS.gene068138:CDS
AATGCCTCAAGGCAACCTCT+TGG	0.493109	1.4:-36898986	MS.gene068138:CDS
AATTGGGATGGCTTCGTCAT+TGG	0.418577	1.4:-36903501	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAGATATCTCAAGGATT+AGG	+	chr1.4:36901039-36901058	None:intergenic	30.0%
AAATTTGTAACAAACTGTCC+AGG	-	chr1.4:36903016-36903035	MS.gene068138:intron	30.0%
AACAAACCTGTGACATAAAA+CGG	+	chr1.4:36900285-36900304	None:intergenic	30.0%
AACAAATTACAAAGGGATAG+AGG	-	chr1.4:36900833-36900852	MS.gene068138:intron	30.0%
AAGGGAAAAAGGAAATTTGT+AGG	-	chr1.4:36899914-36899933	MS.gene068138:intron	30.0%
ACATGATGACTTTATGAGAT+AGG	+	chr1.4:36902077-36902096	None:intergenic	30.0%
AGTAAATGTGAATGTAGCTA+AGG	-	chr1.4:36899810-36899829	MS.gene068138:intron	30.0%
AGTAACAGTCAAAGAATACA+TGG	+	chr1.4:36899704-36899723	None:intergenic	30.0%
AGTACAAAGGAACAAATGAT+TGG	-	chr1.4:36900499-36900518	MS.gene068138:intron	30.0%
ATGGATATGGTTGAGTAAAT+AGG	+	chr1.4:36901243-36901262	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	36898970	36903516	36898970	ID=MS.gene068138
chr1.4	mRNA	36898970	36903516	36898970	ID=MS.gene068138.t1;Parent=MS.gene068138
chr1.4	exon	36903345	36903516	36903345	ID=MS.gene068138.t1.exon1;Parent=MS.gene068138.t1
chr1.4	CDS	36903345	36903516	36903345	ID=cds.MS.gene068138.t1;Parent=MS.gene068138.t1
chr1.4	exon	36903062	36903252	36903062	ID=MS.gene068138.t1.exon2;Parent=MS.gene068138.t1
chr1.4	CDS	36903062	36903252	36903062	ID=cds.MS.gene068138.t1;Parent=MS.gene068138.t1
chr1.4	exon	36902936	36902981	36902936	ID=MS.gene068138.t1.exon3;Parent=MS.gene068138.t1
chr1.4	CDS	36902936	36902981	36902936	ID=cds.MS.gene068138.t1;Parent=MS.gene068138.t1
chr1.4	exon	36902398	36902480	36902398	ID=MS.gene068138.t1.exon4;Parent=MS.gene068138.t1
chr1.4	CDS	36902398	36902480	36902398	ID=cds.MS.gene068138.t1;Parent=MS.gene068138.t1
chr1.4	exon	36902189	36902305	36902189	ID=MS.gene068138.t1.exon5;Parent=MS.gene068138.t1
chr1.4	CDS	36902189	36902305	36902189	ID=cds.MS.gene068138.t1;Parent=MS.gene068138.t1
chr1.4	exon	36899142	36899201	36899142	ID=MS.gene068138.t1.exon6;Parent=MS.gene068138.t1
chr1.4	CDS	36899142	36899201	36899142	ID=cds.MS.gene068138.t1;Parent=MS.gene068138.t1
chr1.4	exon	36898970	36899041	36898970	ID=MS.gene068138.t1.exon7;Parent=MS.gene068138.t1
chr1.4	CDS	36898970	36899041	36898970	ID=cds.MS.gene068138.t1;Parent=MS.gene068138.t1

Gene Sequence

>MS.gene068138

ATGGCTTCGTCATTGGTTAGTTCCATTCTTGTTCAACCCATTTCACGTTGTCATCAACTCCAACAACGCCTTCCACTTCTTGCTTCAGCAACTCCTCCTTCGACCCACAAAGCCCGTTTCGTTGCTCGCCGTAAGGAGTCTGTTTCTGTTCAACAACTCCAACGTCCCCTAAGTAAGTAGTATTATCAAGCAACCAAAGCAATGAATGCTACTTGTTATTGTAATTTATTGACTTTGAACTTTGAATTTGTTGTGTAAATGTAGTTGAATATATGAGATTACCAGCAAGTCAATATTCAGTGTTGGACGCTGAAAGGATTGAACGTGTGAGTGAGGATACATTCAGGTGTTATGTTTACACAATTAAGTTTTTCACATTTGAGGTTTGTCCTGTTTTGCTTGTCAAAGTTGAACAACAACCCAATGGCTGTTGCATTAAGCTCTTATCCTGCAAGGTAGGTACCTACTTTACTTATCATTAAATCCCATATTTTCTTTTTCACCCTTTCTTATTTCTTGTTTTCTTACATTACAGCTTCAGGGTTCCCCTATGGTCGCCGCTCAGAACGATAAGTTTGATGGTCAGTAGTATTGTTTGCTAAATCTCTTGTTACTTGTCGAATCTCGGTCATTAGTTGGATGAAGATCAGATGACTTGTATTATAAAGCTGGTTTTTCTAAGCCATGATACGAGTTGTCTGATCTTCATCCAACTATCGAGATCCCTTGCTCCATGTATTCTTTGACTGTTACTGAATCTATGTCCAAAATGTAGACTCGCGATACAAGGAGGGTAGATGAAATGAAATAATTCTTTAGATGTTACTATTCGTTTAAAGTAGTAAATGTGAATGTAGCTAAGGATGGTTACGGTGATTTCAAAATTATATGGATACCTCCATGTTTACTCAAGTAGAGGTAGTTTTCTCGTTCCCTTTCTAAGAAAGGGAAAAAGGAAATTTGTAGGATATGTCATGTCATTTGATTCATGCTACTTTCAGGAATGTCATTTCAATACTTTAATGTGGTAATGCAGCTATAATGGTGAACCGGATATCGTGTGAAAGTGACTCAGATAAGTCACTGGTGCAGCAACTCACATCAGACACTATAATTGAGGTGGTAGTACTCTAGTTTACCATTGTTTTCTTCTGAATTTTATTTTGTGTAATTTGAGTTAAATTTTCTTTGCATTGCTATGTCGAATTCAGGTAAGCATTGAAATTCCTTTCGCTTTCAAAGCAATACCAAAGCAAGCAATTGAATCAGCTGGGACTCAAGTCCTTGAACAAATACTCAAGATTATGCTTCCCCGTTTTATGTCACAGGTTTGTTAAAGCTCAGTATATTATTTACATGTTTGATTTAAAATGTGTTTCTATTTTTGTATGAAATAAGCTGCAAGGGTTTGGACTTTTGGGAGATGATAAATGAACATATTTAGAGAAATAAGAACCCTATATTCATGAATAGAGATTAACACGGGTAATGGAATGAATTCTGAAACACCTTTCACTAGTACAATGATGAGTACAAAGGAACAAATGATTGGGAAATACAAGTACTCGTAACCAAAGAACAGAACAATTTATAGAAGGGAAGAGAAGTGAGAGTAAGATAGATCTTTGTACAAGCCTAAGAGGAAGAAGTCATTCCAAACAGTGCCAAAGGGAGGAAATAAAGACTTTCATCAAATTCGGCACACCCTTTCTCATTCCTTACACTGCTATTATATACCATGTGTGTCCCTTCCTCGCACACACCTCTCATTCTATGTGATTCCAATCTCTTTGTTACAACTAACTTTCATGATGTGGCATCTTTTCTTTGATGATATCATAACAGAAATTAATTCTGACGAAGAACAAATTACAAAGGGATAGAGGAACAACGAGTCCTCCTTAACATAAGACCAAAAAAAGGGCAGCCTGGTGCACTAAAGCTCTCACATATGCAGGGTCCGAGAAGGGGTCCCACCATTGGTGTATTGTACGCAACCTTGCCCTCTTTTATACACTAAAGCTCCCCCTTAACATAAGACCAAAACACACAATTAATCAAAGCCACCTAATCCTTGAGATATCTGTTTGGCACCCCATTTAAAATATCATGTACTTTATGCCAAATAGAAGCCAAAAGTGAGACGCTTAGTCTTATCCCAAATCAACTTTTACTCCAACAAGACCTCTTTAAAAGTAAGATAGTTATGTTCTAACCGAATGCCCCCACAGGTTGCACTTGCACTTTGGCATGGAAATGTTTCAATGTTGCCTATTTACTCAACCATATCCATGAAATATAATCAGCATAAATGTGTTTATGTGTCAAGGACATAACACAACATCCAGCAAAATTGCCAACTACAAAAGATTGATAAATTATCACATGTATAAGAAGAAACCAGTATATGTATAAAAATTTGAATGTTTACACACATGAGGGTCTGTGGAACTATAAGTATGATAAAAACTAGAGTCAAAGTTACGTAACTTGACAATTCAAAATACTTGTTGAATTTATTATTTTATTATACTACTTAGTATCTTAAATTAGACAGTTTATCTCCTTTGCTTTCGCACCTAACACGGTGATTTACCGAACACCCCTCCAACAGCAACTCGCATTCTAACCTATAGGACTATCTTTTTCTTCAAGTGTACTACATTCTAATCTAATGGTTTAAACTTTAAATGGTCCAAATATGACAGTCTTTATTGTCCATATCTATGAAGTCATTACTTGTCTGACTGATATCCCTGGAACATAAAATACTGACCAAGGTTGATTTCGTTTCAATCACAAATACGTATATAATTTTGGCTTCATATATCAAACTGTTCTCAGCATTCTATCATTTTGAAATCATTTTAGCTGCAATCGTGATAGGAATTATAACTCTGACAGTATGTTTGAAAATTATCTAAAAGTTATACATGGTTGCATTCTAAGTTCACCATACAAAAAATTGTATAATAACTGATAAAACAGGATTACTCTATAAATGGAGTTTTTAATACCAATGTACATAATTTTGTTGATGTATAGACTCAATAGCCAAAGCTATTTATCCTACATAAATCTGACTTCACCTTCAGACAAGGTATCCTATCTCATAAAGTCATCATGTCCTCACTATAAATTATGTTGATGTGAATTGAGTACCAAGTCATCATATCCCTATCCATGAGTAGCAGATGCAATATCACAAGATACAGATTCTCATCGTCCTGGAAAGAACAATAAAACTTAACTGTGCTATTCATGTCATCCTCTGGAAGGATATTTATCTCCACCATGACATGTTAAACCTGAAAAGTTTTGCAGGGAAGGGATTACGTATGTTGACTTTATTAACCTTAAACAAAACACTGCCAACCTTTAAAATAACATAATCTGGGAAGACAGATGACTGTAAACCTAGCTTCTATGAAGCATCTCTGATTTCTTTGGCTTTTTCATTACATGTACATTGACTAGTAGAAAGATTCAGCTGGGACTCAAGTCCTTGAACAAATACTCAAAATTTAGGTAGAAAGATTCAGTCATGTTATTCTGTCAGCTTTTACACAAATACTGGAATGAACGAAAGAGTGGGTGTTTCTGCAAATTCAAGTTTAAAAGTCACATTTCTTGGGAGAAATCAGTCCTTTTATATGGACTGTATATAAATTGCGTAGGGTTGAGATCAAACGCTGGATGTGTTAGAGTTTAAAGACAGAGAAGATTTTGTTTTACAATATTGTAGTTTGATTCAACAAAGTAACATTGTATATTAATTGCAGCCTAAAATGTGAAATCCATAATAATTTATTACTAGAGATAGGTGTTTGGTGGTCTCGTCCATCATCTGCGATAATGCCAATTGTCATAAAATTTTCAAATACTCTATAATATCCTTGGATTTTATATAGAAAAAATCATCCTAGGAAAACTTATTATTAAAAACATCACCAATACCATATTACATGTTGCAATGTTTTATTCTGTGCAGCTCTCATCGAAATAACTTTAATTGACTCTTATCTAGATCTTGAGAGGATGGGGTGAAATTTGTAACAAACTGTCCAGGTGGATGGTTAGTAAGCATGGGAATATGTGAGGGTTAATAGTGGAAGGGAATTGAGAAGGGTAGGCTGTTTATTAGGTAAATGTATGGAGCCATTTGGCTAGGGAGGTTGCAGACCCTCTTAGTGACGCACACAGTACTAATATATTTTTTACAATAAATACAGCATTAATATAAATCTTTGTGAATAACTTATTATATAGCAAAGTAATTGCTCTGAGTTCACCTTTTATTTCATTGGTCTTTTAGTTCTGTATTACTGCTACTGATACATACTTGCTGACTACAGTAGCGGTGGCCAGAGTTATGGTTCTACAATAGATTGCTTGCTACTTGAAGTTTTGTACTAATTTTAGGTAGTGAGAAATTTGTACAATTTATTTTATGCTGAGTTATTTGTCTTGAACAGCTTGTGAAAGATTATCAAGCCTGGGCCTCTGGAAATGCCTCAAGGCAACCTCTTGGGACAGGTGAAATCTGA

Protein sequence

>MS.gene068138.t1

MASSLVSSILVQPISRCHQLQQRLPLLASATPPSTHKARFVARRKESVSVQQLQRPLIEYMRLPASQYSVLDAERIERVSEDTFRCYVYTIKFFTFEVCPVLLVKVEQQPNGCCIKLLSCKLQGSPMVAAQNDKFDAIMVNRISCESDSDKSLVQQLTSDTIIEVSIEIPFAFKAIPKQAIESAGTQVLEQILKIMLPRFMSQFCITATDTYLLTTVAVARVMLVKDYQAWASGNASRQPLGTGEI