AlfalfaGEDB | MS.gene24491

M. sativa cultivar XinJiangDaYe / MS.gene24491

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24491.t1	XP_003589047.1	90.4	156	7	2	1	153	10	160	5.40E-66	260.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24491.t1	G7IBB4	90.4	156	7	2	1	153	10	160	3.9e-66	260.4

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene24491	-0.813789	2.14E-51	-1.69E-46
MS.gene049181	MS.gene24491	0.843205	1.62E-58	-1.69E-46
MS.gene049217	MS.gene24491	-0.822122	2.80E-53	-1.69E-46
MS.gene049222	MS.gene24491	-0.819063	1.41E-52	-1.69E-46
MS.gene049232	MS.gene24491	-0.841377	4.93E-58	-1.69E-46
MS.gene049259	MS.gene24491	0.814787	1.29E-51	-1.69E-46
MS.gene049281	MS.gene24491	0.848112	7.54E-60	-1.69E-46
MS.gene049285	MS.gene24491	-0.819286	1.26E-52	-1.69E-46
MS.gene049312	MS.gene24491	0.811458	6.93E-51	-1.69E-46
MS.gene049320	MS.gene24491	-0.830454	2.91E-55	-1.69E-46
MS.gene049483	MS.gene24491	0.822109	2.82E-53	-1.69E-46
MS.gene049611	MS.gene24491	0.816562	5.19E-52	-1.69E-46
MS.gene049627	MS.gene24491	-0.816258	6.07E-52	-1.69E-46
MS.gene049865	MS.gene24491	-0.816092	6.61E-52	-1.69E-46
MS.gene050082	MS.gene24491	0.802024	6.83E-49	-1.69E-46
MS.gene05010	MS.gene24491	-0.835243	1.88E-56	-1.69E-46
MS.gene050129	MS.gene24491	0.815745	7.90E-52	-1.69E-46
MS.gene050163	MS.gene24491	-0.803884	2.82E-49	-1.69E-46
MS.gene050165	MS.gene24491	-0.808156	3.56E-50	-1.69E-46
MS.gene050170	MS.gene24491	-0.828463	8.87E-55	-1.69E-46
MS.gene050216	MS.gene24491	-0.827075	1.91E-54	-1.69E-46
MS.gene050323	MS.gene24491	-0.810294	1.24E-50	-1.69E-46
MS.gene050363	MS.gene24491	0.829511	4.94E-55	-1.69E-46
MS.gene050381	MS.gene24491	0.8757	2.51E-68	-1.69E-46
MS.gene050496	MS.gene24491	-0.853727	1.97E-61	-1.69E-46
MS.gene050504	MS.gene24491	-0.852992	3.21E-61	-1.69E-46
MS.gene050518	MS.gene24491	-0.81839	2.01E-52	-1.69E-46
MS.gene050577	MS.gene24491	-0.810857	9.36E-51	-1.69E-46
MS.gene050612	MS.gene24491	-0.837176	6.07E-57	-1.69E-46
MS.gene050675	MS.gene24491	-0.816478	5.42E-52	-1.69E-46
MS.gene050699	MS.gene24491	-0.81573	7.96E-52	-1.69E-46
MS.gene050772	MS.gene24491	-0.803473	3.43E-49	-1.69E-46
MS.gene050868	MS.gene24491	-0.839899	1.20E-57	-1.69E-46
MS.gene050871	MS.gene24491	-0.840015	1.12E-57	-1.69E-46
MS.gene050876	MS.gene24491	-0.813189	2.90E-51	-1.69E-46
MS.gene050883	MS.gene24491	0.86117	1.24E-63	-1.69E-46
MS.gene050986	MS.gene24491	-0.828098	1.09E-54	-1.69E-46
MS.gene051044	MS.gene24491	0.80603	1.00E-49	-1.69E-46
MS.gene05104	MS.gene24491	0.820284	7.44E-53	-1.69E-46
MS.gene051127	MS.gene24491	0.841409	4.84E-58	-1.69E-46
MS.gene051138	MS.gene24491	0.80465	1.95E-49	-1.69E-46
MS.gene051364	MS.gene24491	0.8627	4.21E-64	-1.69E-46
MS.gene051366	MS.gene24491	0.844431	7.59E-59	-1.69E-46
MS.gene051367	MS.gene24491	0.848264	6.85E-60	-1.69E-46
MS.gene05141	MS.gene24491	0.833774	4.40E-56	-1.69E-46
MS.gene051694	MS.gene24491	-0.803084	4.13E-49	-1.69E-46
MS.gene051858	MS.gene24491	-0.807893	4.05E-50	-1.69E-46
MS.gene051946	MS.gene24491	0.870764	1.14E-66	-1.69E-46
MS.gene052164	MS.gene24491	-0.824609	7.36E-54	-1.69E-46
MS.gene05234	MS.gene24491	0.800761	1.24E-48	-1.69E-46
MS.gene052482	MS.gene24491	-0.853034	3.12E-61	-1.69E-46
MS.gene052486	MS.gene24491	-0.868629	5.67E-66	-1.69E-46
MS.gene052966	MS.gene24491	-0.807302	5.40E-50	-1.69E-46
MS.gene053083	MS.gene24491	0.843272	1.55E-58	-1.69E-46
MS.gene053203	MS.gene24491	-0.823423	1.40E-53	-1.69E-46
MS.gene053213	MS.gene24491	-0.803454	3.46E-49	-1.69E-46
MS.gene053420	MS.gene24491	0.876955	9.25E-69	-1.69E-46
MS.gene053549	MS.gene24491	0.861368	1.08E-63	-1.69E-46
MS.gene053561	MS.gene24491	0.840479	8.49E-58	-1.69E-46
MS.gene053574	MS.gene24491	-0.809652	1.70E-50	-1.69E-46
MS.gene053826	MS.gene24491	0.854012	1.63E-61	-1.69E-46
MS.gene054003	MS.gene24491	-0.817683	2.90E-52	-1.69E-46
MS.gene054054	MS.gene24491	0.832951	7.05E-56	-1.69E-46
MS.gene054056	MS.gene24491	0.81857	1.83E-52	-1.69E-46
MS.gene054595	MS.gene24491	-0.812196	4.79E-51	-1.69E-46
MS.gene054616	MS.gene24491	0.838118	3.48E-57	-1.69E-46
MS.gene054642	MS.gene24491	-0.804406	2.19E-49	-1.69E-46
MS.gene054707	MS.gene24491	0.815209	1.04E-51	-1.69E-46
MS.gene054708	MS.gene24491	0.839793	1.28E-57	-1.69E-46
MS.gene05470	MS.gene24491	-0.816174	6.34E-52	-1.69E-46
MS.gene054954	MS.gene24491	-0.836082	1.15E-56	-1.69E-46
MS.gene054959	MS.gene24491	0.813801	2.13E-51	-1.69E-46
MS.gene055124	MS.gene24491	0.809923	1.49E-50	-1.69E-46
MS.gene055139	MS.gene24491	0.810219	1.29E-50	-1.69E-46
MS.gene055154	MS.gene24491	0.861224	1.19E-63	-1.69E-46
MS.gene055202	MS.gene24491	0.877767	4.83E-69	-1.69E-46
MS.gene055362	MS.gene24491	-0.837019	6.65E-57	-1.69E-46
MS.gene055502	MS.gene24491	-0.840698	7.43E-58	-1.69E-46
MS.gene055549	MS.gene24491	0.819653	1.04E-52	-1.69E-46
MS.gene055550	MS.gene24491	0.823684	1.21E-53	-1.69E-46
MS.gene055577	MS.gene24491	-0.831773	1.38E-55	-1.69E-46
MS.gene05589	MS.gene24491	-0.839575	1.46E-57	-1.69E-46
MS.gene056046	MS.gene24491	-0.82034	7.22E-53	-1.69E-46
MS.gene056310	MS.gene24491	0.850674	1.46E-60	-1.69E-46
MS.gene056311	MS.gene24491	0.879813	9.17E-70	-1.69E-46
MS.gene056313	MS.gene24491	0.81836	2.04E-52	-1.69E-46
MS.gene056408	MS.gene24491	0.840507	8.34E-58	-1.69E-46
MS.gene056504	MS.gene24491	-0.860962	1.43E-63	-1.69E-46
MS.gene056510	MS.gene24491	-0.816997	4.14E-52	-1.69E-46
MS.gene056530	MS.gene24491	0.808207	3.47E-50	-1.69E-46
MS.gene056550	MS.gene24491	0.822396	2.42E-53	-1.69E-46
MS.gene056657	MS.gene24491	-0.817755	2.80E-52	-1.69E-46
MS.gene056878	MS.gene24491	-0.804582	2.02E-49	-1.69E-46
MS.gene056880	MS.gene24491	0.818196	2.22E-52	-1.69E-46
MS.gene057014	MS.gene24491	0.875314	3.40E-68	-1.69E-46
MS.gene057173	MS.gene24491	0.813614	2.34E-51	-1.69E-46
MS.gene05726	MS.gene24491	0.815092	1.10E-51	-1.69E-46
MS.gene057473	MS.gene24491	0.821358	4.21E-53	-1.69E-46
MS.gene057499	MS.gene24491	0.83554	1.58E-56	-1.69E-46
MS.gene057831	MS.gene24491	-0.806262	8.96E-50	-1.69E-46
MS.gene057872	MS.gene24491	-0.802948	4.40E-49	-1.69E-46
MS.gene058068	MS.gene24491	0.831736	1.41E-55	-1.69E-46
MS.gene058099	MS.gene24491	0.817447	3.28E-52	-1.69E-46
MS.gene058111	MS.gene24491	0.835921	1.27E-56	-1.69E-46
MS.gene058157	MS.gene24491	-0.825875	3.69E-54	-1.69E-46
MS.gene058171	MS.gene24491	0.866924	2.00E-65	-1.69E-46
MS.gene058173	MS.gene24491	0.852978	3.24E-61	-1.69E-46
MS.gene058175	MS.gene24491	0.86139	1.06E-63	-1.69E-46
MS.gene058268	MS.gene24491	0.820194	7.80E-53	-1.69E-46
MS.gene058269	MS.gene24491	0.829857	4.07E-55	-1.69E-46
MS.gene058334	MS.gene24491	0.811797	5.85E-51	-1.69E-46
MS.gene05837	MS.gene24491	-0.837462	5.12E-57	-1.69E-46
MS.gene058419	MS.gene24491	-0.825072	5.72E-54	-1.69E-46
MS.gene058493	MS.gene24491	0.875809	2.30E-68	-1.69E-46
MS.gene058494	MS.gene24491	0.871292	7.64E-67	-1.69E-46
MS.gene058496	MS.gene24491	0.849298	3.54E-60	-1.69E-46
MS.gene058628	MS.gene24491	0.838987	2.07E-57	-1.69E-46
MS.gene058629	MS.gene24491	0.823081	1.68E-53	-1.69E-46
MS.gene058630	MS.gene24491	0.836667	8.18E-57	-1.69E-46
MS.gene058724	MS.gene24491	0.808926	2.44E-50	-1.69E-46
MS.gene058773	MS.gene24491	-0.818766	1.65E-52	-1.69E-46
MS.gene05884	MS.gene24491	0.851124	1.09E-60	-1.69E-46
MS.gene059022	MS.gene24491	-0.856786	2.54E-62	-1.69E-46
MS.gene059023	MS.gene24491	-0.816358	5.76E-52	-1.69E-46
MS.gene059045	MS.gene24491	0.817527	3.15E-52	-1.69E-46
MS.gene059052	MS.gene24491	0.836781	7.65E-57	-1.69E-46
MS.gene059223	MS.gene24491	0.829006	6.55E-55	-1.69E-46
MS.gene059677	MS.gene24491	-0.824162	9.37E-54	-1.69E-46
MS.gene059718	MS.gene24491	-0.819133	1.36E-52	-1.69E-46
MS.gene059837	MS.gene24491	-0.82325	1.53E-53	-1.69E-46
MS.gene059865	MS.gene24491	-0.859932	2.94E-63	-1.69E-46
MS.gene059902	MS.gene24491	-0.810637	1.04E-50	-1.69E-46
MS.gene059916	MS.gene24491	0.826204	3.08E-54	-1.69E-46
MS.gene06000	MS.gene24491	-0.813595	2.36E-51	-1.69E-46
MS.gene060187	MS.gene24491	0.856484	3.12E-62	-1.69E-46
MS.gene060339	MS.gene24491	-0.804758	1.85E-49	-1.69E-46
MS.gene060482	MS.gene24491	-0.81376	2.17E-51	-1.69E-46
MS.gene060526	MS.gene24491	-0.809967	1.46E-50	-1.69E-46
MS.gene060593	MS.gene24491	0.808941	2.42E-50	-1.69E-46
MS.gene060595	MS.gene24491	0.913882	3.67E-84	-1.69E-46
MS.gene060703	MS.gene24491	-0.855285	6.99E-62	-1.69E-46
MS.gene060762	MS.gene24491	-0.817355	3.44E-52	-1.69E-46
MS.gene060778	MS.gene24491	-0.842097	3.18E-58	-1.69E-46
MS.gene06077	MS.gene24491	-0.875454	3.04E-68	-1.69E-46
MS.gene060982	MS.gene24491	-0.83903	2.02E-57	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24491.t1	MTR_1g017830	91.026	156	6	2	1	153	10	160	6.26e-90	259
MS.gene24491.t1	MTR_3g103290	57.516	153	50	5	2	150	13	154	4.43e-48	153

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24491.t1	AT1G10140	46.753	154	73	5	2	147	8	160	7.18e-23	89.0
MS.gene24491.t1	AT1G58420	43.976	166	75	4	2	150	11	175	4.10e-20	82.4

Find 21 sgRNAs with CRISPR-Local

Find 24 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAGCAACAGAAATTGAATAA+AGG	0.334932	1.1:-4805206	MS.gene24491:CDS
GCCGCTTCTGCTAGAACTTT+AGG	0.343900	1.1:-4805266	MS.gene24491:CDS
TGTTCACCAATAAGAGCATT+AGG	0.382819	1.1:-4805482	MS.gene24491:CDS
AGCAACAGAAATTGAATAAA+GGG	0.385574	1.1:-4805205	MS.gene24491:CDS
TCTAGTGTTGAAGGAAAAGT+TGG	0.393697	1.1:-4805125	MS.gene24491:CDS
ACAGCATAACTCTTTGATCT+AGG	0.434486	1.1:+4805083	None:intergenic
AAGATCATCAGCATCATTAG+AGG	0.441233	1.1:-4805318	MS.gene24491:CDS
TGTGGTCAAAATATGAGTTA+TGG	0.456641	1.1:-4805422	MS.gene24491:CDS
CCTTCAACACTAGAATCAAA+AGG	0.478362	1.1:+4805134	None:intergenic
TTTAGGTAATAGAATTGATG+TGG	0.523602	1.1:-4805249	MS.gene24491:CDS
AATTTACTAGCAGCATCCAT+TGG	0.526181	1.1:+4805392	None:intergenic
TTACCTAAGTCTAGTAGTGT+TGG	0.528478	1.1:-4805182	MS.gene24491:CDS
ACCTAAAGTTCTAGCAGAAG+CGG	0.542651	1.1:+4805265	None:intergenic
ATTCCAACACTACTAGACTT+AGG	0.543949	1.1:+4805179	None:intergenic
TAAGTCTAGTAGTGTTGGAA+TGG	0.550381	1.1:-4805177	MS.gene24491:CDS
AGATCAAAGAGTTATGCTGT+TGG	0.581741	1.1:-4805080	MS.gene24491:CDS
GAGTTATGGAAGTTATCCAA+TGG	0.620886	1.1:-4805408	MS.gene24491:CDS
AGATCATCAGCATCATTAGA+GGG	0.626119	1.1:-4805317	MS.gene24491:CDS
AGAACCAAAACATGTTTGTG+AGG	0.637515	1.1:-4805511	None:intergenic
TGGAATGGCTAAGATTGATG+AGG	0.704946	1.1:-4805162	MS.gene24491:CDS
GTAAGAAGCATAACAAACTG+TGG	0.710541	1.1:-4805440	MS.gene24491:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	AGCAACAGAAATTGAATAAA+GGG	-	chr1.1:4805347-4805366	MS.gene24491:CDS	25.0%
!	TTTAGGTAATAGAATTGATG+TGG	-	chr1.1:4805303-4805322	MS.gene24491:CDS	25.0%
	CAGCAACAGAAATTGAATAA+AGG	-	chr1.1:4805346-4805365	MS.gene24491:CDS	30.0%
	TGTGGTCAAAATATGAGTTA+TGG	-	chr1.1:4805130-4805149	MS.gene24491:CDS	30.0%
!!	AAGATTTTGTTGAGCTTGTT+AGG	-	chr1.1:4805263-4805282	MS.gene24491:CDS	30.0%
!!!	AGATTTTGTTGAGCTTGTTA+GGG	-	chr1.1:4805264-4805283	MS.gene24491:CDS	30.0%
	AAGATCATCAGCATCATTAG+AGG	-	chr1.1:4805234-4805253	MS.gene24491:CDS	35.0%
	AATTTACTAGCAGCATCCAT+TGG	+	chr1.1:4805163-4805182	None:intergenic	35.0%
	ACAGCATAACTCTTTGATCT+AGG	+	chr1.1:4805472-4805491	None:intergenic	35.0%
	AGATCAAAGAGTTATGCTGT+TGG	-	chr1.1:4805472-4805491	MS.gene24491:CDS	35.0%
	AGATCATCAGCATCATTAGA+GGG	-	chr1.1:4805235-4805254	MS.gene24491:CDS	35.0%
	ATTCCAACACTACTAGACTT+AGG	+	chr1.1:4805376-4805395	None:intergenic	35.0%
	CCTTCAACACTAGAATCAAA+AGG	+	chr1.1:4805421-4805440	None:intergenic	35.0%
	GAGTTATGGAAGTTATCCAA+TGG	-	chr1.1:4805144-4805163	MS.gene24491:CDS	35.0%
	TTACCTAAGTCTAGTAGTGT+TGG	-	chr1.1:4805370-4805389	MS.gene24491:CDS	35.0%
!	GCTTTTCCTAATGCTCTTAT+TGG	+	chr1.1:4805079-4805098	None:intergenic	35.0%
!	GTAAGAAGCATAACAAACTG+TGG	-	chr1.1:4805112-4805131	MS.gene24491:CDS	35.0%
!	TAAGTCTAGTAGTGTTGGAA+TGG	-	chr1.1:4805375-4805394	MS.gene24491:CDS	35.0%
!	TCTAGTGTTGAAGGAAAAGT+TGG	-	chr1.1:4805427-4805446	MS.gene24491:CDS	35.0%
!!	CCTTTTGATTCTAGTGTTGA+AGG	-	chr1.1:4805418-4805437	MS.gene24491:CDS	35.0%
!!	TGTTCACCAATAAGAGCATT+AGG	-	chr1.1:4805070-4805089	MS.gene24491:CDS	35.0%
	TGGAATGGCTAAGATTGATG+AGG	-	chr1.1:4805390-4805409	MS.gene24491:CDS	40.0%
!	ACCTAAAGTTCTAGCAGAAG+CGG	+	chr1.1:4805290-4805309	None:intergenic	40.0%
	GCCGCTTCTGCTAGAACTTT+AGG	-	chr1.1:4805286-4805305	MS.gene24491:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	4805052	4805522	4805052	ID=MS.gene24491
chr1.1	mRNA	4805052	4805522	4805052	ID=MS.gene24491.t1;Parent=MS.gene24491
chr1.1	exon	4805052	4805522	4805052	ID=MS.gene24491.t1.exon1;Parent=MS.gene24491.t1
chr1.1	CDS	4805052	4805522	4805052	ID=cds.MS.gene24491.t1;Parent=MS.gene24491.t1

Gene Sequence

>MS.gene24491

ATGTTTGTGAGGATCATGTGTTCACCAATAAGAGCATTAGGAAAAGCAAGAGATGCATACGTAAGAAGCATAACAAACTGTGGTCAAAATATGAGTTATGGAAGTTATCCAATGGATGCTGCTAGTAAATTTTCTTTATCAAGAAGTCAAAGTGCAGCAACATCAAGAAGATCATCATCAAGAAGATCATCAGCATCATTAGAGGGTAATGAAGATTTTGTTGAGCTTGTTAGGGCCGCTTCTGCTAGAACTTTAGGTAATAGAATTGATGTGGATTTAGTTCTCAAGCAACAACAGCAACAGAAATTGAATAAAGGGTTACCTAAGTCTAGTAGTGTTGGAATGGCTAAGATTGATGAGGATATGCCTTTTGATTCTAGTGTTGAAGGAAAAGTTGGTTTTGTTGCTGATTCTTATCCTAGATCAAAGAGTTATGCTGTTGGACATAGAAGAAATGTTGTTGCTTTCTGA

Protein sequence

>MS.gene24491.t1

MFVRIMCSPIRALGKARDAYVRSITNCGQNMSYGSYPMDAASKFSLSRSQSAATSRRSSSRRSSASLEGNEDFVELVRAASARTLGNRIDVDLVLKQQQQQKLNKGLPKSSSVGMAKIDEDMPFDSSVEGKVGFVADSYPRSKSYAVGHRRNVVAF