Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73545.t1 | KEH42024.1 | 94.8 | 269 | 14 | 0 | 30 | 298 | 65 | 333 | 1.80E-147 | 531.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73545.t1 | A0A072VJ17 | 94.8 | 269 | 14 | 0 | 30 | 298 | 65 | 333 | 1.3e-147 | 531.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene73545 | 0.890849 | 6.79E-74 | -1.69E-46 |
| MS.gene04921 | MS.gene73545 | -0.803172 | 3.96E-49 | -1.69E-46 |
| MS.gene049222 | MS.gene73545 | 0.833562 | 4.97E-56 | -1.69E-46 |
| MS.gene049232 | MS.gene73545 | 0.819354 | 1.21E-52 | -1.69E-46 |
| MS.gene049285 | MS.gene73545 | 0.841878 | 3.64E-58 | -1.69E-46 |
| MS.gene049320 | MS.gene73545 | 0.831171 | 1.94E-55 | -1.69E-46 |
| MS.gene049609 | MS.gene73545 | 0.827231 | 1.75E-54 | -1.69E-46 |
| MS.gene049633 | MS.gene73545 | 0.834089 | 3.67E-56 | -1.69E-46 |
| MS.gene049657 | MS.gene73545 | 0.804231 | 2.39E-49 | -1.69E-46 |
| MS.gene049865 | MS.gene73545 | 0.84 | 1.13E-57 | -1.69E-46 |
| MS.gene05010 | MS.gene73545 | 0.847266 | 1.29E-59 | -1.69E-46 |
| MS.gene050170 | MS.gene73545 | 0.923997 | 1.27E-89 | -1.69E-46 |
| MS.gene050323 | MS.gene73545 | 0.847445 | 1.15E-59 | -1.69E-46 |
| MS.gene050496 | MS.gene73545 | 0.885352 | 8.76E-72 | -1.69E-46 |
| MS.gene050504 | MS.gene73545 | 0.855111 | 7.85E-62 | -1.69E-46 |
| MS.gene050518 | MS.gene73545 | 0.811937 | 5.45E-51 | -1.69E-46 |
| MS.gene050577 | MS.gene73545 | 0.889747 | 1.84E-73 | -1.69E-46 |
| MS.gene050612 | MS.gene73545 | 0.839313 | 1.71E-57 | -1.69E-46 |
| MS.gene050675 | MS.gene73545 | 0.816396 | 5.65E-52 | -1.69E-46 |
| MS.gene050699 | MS.gene73545 | 0.85556 | 5.81E-62 | -1.69E-46 |
| MS.gene050747 | MS.gene73545 | 0.828078 | 1.10E-54 | -1.69E-46 |
| MS.gene050772 | MS.gene73545 | 0.831533 | 1.58E-55 | -1.69E-46 |
| MS.gene05080 | MS.gene73545 | 0.830383 | 3.03E-55 | -1.69E-46 |
| MS.gene05081 | MS.gene73545 | 0.811124 | 8.19E-51 | -1.69E-46 |
| MS.gene050868 | MS.gene73545 | 0.85449 | 1.19E-61 | -1.69E-46 |
| MS.gene050871 | MS.gene73545 | 0.851288 | 9.78E-61 | -1.69E-46 |
| MS.gene050904 | MS.gene73545 | 0.874323 | 7.39E-68 | -1.69E-46 |
| MS.gene050950 | MS.gene73545 | 0.816663 | 4.92E-52 | -1.69E-46 |
| MS.gene050986 | MS.gene73545 | 0.839536 | 1.49E-57 | -1.69E-46 |
| MS.gene051268 | MS.gene73545 | 0.802817 | 4.69E-49 | -1.69E-46 |
| MS.gene051317 | MS.gene73545 | 0.815517 | 8.88E-52 | -1.69E-46 |
| MS.gene051364 | MS.gene73545 | -0.809579 | 1.76E-50 | -1.69E-46 |
| MS.gene051551 | MS.gene73545 | 0.828002 | 1.15E-54 | -1.69E-46 |
| MS.gene051560 | MS.gene73545 | 0.800516 | 1.39E-48 | -1.69E-46 |
| MS.gene051838 | MS.gene73545 | 0.833334 | 5.66E-56 | -1.69E-46 |
| MS.gene051941 | MS.gene73545 | 0.824195 | 9.21E-54 | -1.69E-46 |
| MS.gene052164 | MS.gene73545 | 0.871039 | 9.26E-67 | -1.69E-46 |
| MS.gene052482 | MS.gene73545 | 0.885267 | 9.42E-72 | -1.69E-46 |
| MS.gene052486 | MS.gene73545 | 0.882287 | 1.18E-70 | -1.69E-46 |
| MS.gene052494 | MS.gene73545 | -0.841889 | 3.61E-58 | -1.69E-46 |
| MS.gene052501 | MS.gene73545 | 0.80326 | 3.80E-49 | -1.69E-46 |
| MS.gene052503 | MS.gene73545 | 0.869656 | 2.63E-66 | -1.69E-46 |
| MS.gene052504 | MS.gene73545 | 0.802977 | 4.34E-49 | -1.69E-46 |
| MS.gene052506 | MS.gene73545 | 0.835661 | 1.47E-56 | -1.69E-46 |
| MS.gene052615 | MS.gene73545 | 0.80273 | 4.88E-49 | -1.69E-46 |
| MS.gene052822 | MS.gene73545 | 0.835559 | 1.56E-56 | -1.69E-46 |
| MS.gene052823 | MS.gene73545 | 0.871672 | 5.72E-67 | -1.69E-46 |
| MS.gene052825 | MS.gene73545 | 0.868225 | 7.65E-66 | -1.69E-46 |
| MS.gene052966 | MS.gene73545 | 0.822768 | 1.99E-53 | -1.69E-46 |
| MS.gene053083 | MS.gene73545 | -0.84492 | 5.60E-59 | -1.69E-46 |
| MS.gene053097 | MS.gene73545 | -0.828073 | 1.10E-54 | -1.69E-46 |
| MS.gene053203 | MS.gene73545 | 0.874178 | 8.27E-68 | -1.69E-46 |
| MS.gene053213 | MS.gene73545 | 0.810826 | 9.50E-51 | -1.69E-46 |
| MS.gene053286 | MS.gene73545 | 0.810762 | 9.81E-51 | -1.69E-46 |
| MS.gene053436 | MS.gene73545 | 0.843337 | 1.49E-58 | -1.69E-46 |
| MS.gene053479 | MS.gene73545 | 0.817328 | 3.49E-52 | -1.69E-46 |
| MS.gene053480 | MS.gene73545 | 0.859554 | 3.82E-63 | -1.69E-46 |
| MS.gene053549 | MS.gene73545 | -0.814825 | 1.26E-51 | -1.69E-46 |
| MS.gene053574 | MS.gene73545 | 0.840892 | 6.61E-58 | -1.69E-46 |
| MS.gene053626 | MS.gene73545 | 0.832676 | 8.25E-56 | -1.69E-46 |
| MS.gene053824 | MS.gene73545 | 0.857897 | 1.19E-62 | -1.69E-46 |
| MS.gene053997 | MS.gene73545 | 0.811792 | 5.86E-51 | -1.69E-46 |
| MS.gene054343 | MS.gene73545 | 0.803096 | 4.10E-49 | -1.69E-46 |
| MS.gene054344 | MS.gene73545 | 0.864908 | 8.66E-65 | -1.69E-46 |
| MS.gene054408 | MS.gene73545 | 0.814454 | 1.53E-51 | -1.69E-46 |
| MS.gene054595 | MS.gene73545 | 0.826038 | 3.38E-54 | -1.69E-46 |
| MS.gene054600 | MS.gene73545 | 0.804181 | 2.44E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene73545 | 0.901911 | 1.66E-78 | -1.69E-46 |
| MS.gene054851 | MS.gene73545 | -0.824866 | 6.40E-54 | -1.69E-46 |
| MS.gene054927 | MS.gene73545 | 0.818352 | 2.05E-52 | -1.69E-46 |
| MS.gene054954 | MS.gene73545 | 0.860555 | 1.90E-63 | -1.69E-46 |
| MS.gene055251 | MS.gene73545 | -0.80188 | 7.31E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene73545 | 0.859223 | 4.80E-63 | -1.69E-46 |
| MS.gene055502 | MS.gene73545 | 0.842513 | 2.47E-58 | -1.69E-46 |
| MS.gene055577 | MS.gene73545 | 0.844748 | 6.24E-59 | -1.69E-46 |
| MS.gene055719 | MS.gene73545 | -0.804138 | 2.49E-49 | -1.69E-46 |
| MS.gene055748 | MS.gene73545 | 0.847942 | 8.40E-60 | -1.69E-46 |
| MS.gene055750 | MS.gene73545 | 0.845939 | 2.97E-59 | -1.69E-46 |
| MS.gene055751 | MS.gene73545 | 0.850104 | 2.11E-60 | -1.69E-46 |
| MS.gene055776 | MS.gene73545 | 0.812885 | 3.39E-51 | -1.69E-46 |
| MS.gene05589 | MS.gene73545 | 0.907255 | 6.17E-81 | -1.69E-46 |
| MS.gene056040 | MS.gene73545 | 0.819957 | 8.84E-53 | -1.69E-46 |
| MS.gene056046 | MS.gene73545 | 0.826119 | 3.23E-54 | -1.69E-46 |
| MS.gene056166 | MS.gene73545 | 0.811352 | 7.31E-51 | -1.69E-46 |
| MS.gene056266 | MS.gene73545 | 0.808308 | 3.30E-50 | -1.69E-46 |
| MS.gene056387 | MS.gene73545 | 0.80073 | 1.26E-48 | -1.69E-46 |
| MS.gene056409 | MS.gene73545 | 0.820614 | 6.25E-53 | -1.69E-46 |
| MS.gene056450 | MS.gene73545 | 0.812234 | 4.70E-51 | -1.69E-46 |
| MS.gene056504 | MS.gene73545 | 0.897452 | 1.39E-76 | -1.69E-46 |
| MS.gene056510 | MS.gene73545 | 0.84571 | 3.43E-59 | -1.69E-46 |
| MS.gene056610 | MS.gene73545 | 0.83588 | 1.30E-56 | -1.69E-46 |
| MS.gene056657 | MS.gene73545 | 0.814963 | 1.18E-51 | -1.69E-46 |
| MS.gene056692 | MS.gene73545 | 0.845471 | 3.98E-59 | -1.69E-46 |
| MS.gene056878 | MS.gene73545 | 0.845073 | 5.10E-59 | -1.69E-46 |
| MS.gene05726 | MS.gene73545 | -0.809528 | 1.81E-50 | -1.69E-46 |
| MS.gene057658 | MS.gene73545 | 0.839431 | 1.59E-57 | -1.69E-46 |
| MS.gene057831 | MS.gene73545 | 0.843094 | 1.73E-58 | -1.69E-46 |
| MS.gene05787 | MS.gene73545 | 0.823213 | 1.56E-53 | -1.69E-46 |
| MS.gene058157 | MS.gene73545 | 0.828437 | 9.00E-55 | -1.69E-46 |
| MS.gene058334 | MS.gene73545 | -0.844933 | 5.56E-59 | -1.69E-46 |
| MS.gene058338 | MS.gene73545 | 0.836161 | 1.10E-56 | -1.69E-46 |
| MS.gene05837 | MS.gene73545 | 0.8581 | 1.04E-62 | -1.69E-46 |
| MS.gene058419 | MS.gene73545 | 0.856481 | 3.12E-62 | -1.69E-46 |
| MS.gene058544 | MS.gene73545 | 0.837843 | 4.09E-57 | -1.69E-46 |
| MS.gene058773 | MS.gene73545 | 0.810285 | 1.24E-50 | -1.69E-46 |
| MS.gene058838 | MS.gene73545 | 0.865243 | 6.80E-65 | -1.69E-46 |
| MS.gene059022 | MS.gene73545 | 0.863249 | 2.85E-64 | -1.69E-46 |
| MS.gene059023 | MS.gene73545 | 0.888186 | 7.38E-73 | -1.69E-46 |
| MS.gene059103 | MS.gene73545 | -0.815226 | 1.03E-51 | -1.69E-46 |
| MS.gene059303 | MS.gene73545 | 0.838521 | 2.74E-57 | -1.69E-46 |
| MS.gene059480 | MS.gene73545 | -0.818199 | 2.22E-52 | -1.69E-46 |
| MS.gene059667 | MS.gene73545 | 0.858023 | 1.10E-62 | -1.69E-46 |
| MS.gene059677 | MS.gene73545 | 0.84683 | 1.70E-59 | -1.69E-46 |
| MS.gene059718 | MS.gene73545 | 0.83852 | 2.74E-57 | -1.69E-46 |
| MS.gene059756 | MS.gene73545 | 0.836628 | 8.37E-57 | -1.69E-46 |
| MS.gene059801 | MS.gene73545 | 0.82204 | 2.93E-53 | -1.69E-46 |
| MS.gene059837 | MS.gene73545 | 0.904649 | 9.84E-80 | -1.69E-46 |
| MS.gene059865 | MS.gene73545 | 0.849432 | 3.25E-60 | -1.69E-46 |
| MS.gene05995 | MS.gene73545 | 0.815575 | 8.62E-52 | -1.69E-46 |
| MS.gene05996 | MS.gene73545 | 0.840711 | 7.37E-58 | -1.69E-46 |
| MS.gene06000 | MS.gene73545 | 0.876986 | 9.02E-69 | -1.69E-46 |
| MS.gene06027 | MS.gene73545 | 0.804086 | 2.56E-49 | -1.69E-46 |
| MS.gene060593 | MS.gene73545 | -0.824297 | 8.71E-54 | -1.69E-46 |
| MS.gene060595 | MS.gene73545 | -0.855238 | 7.21E-62 | -1.69E-46 |
| MS.gene060703 | MS.gene73545 | 0.818585 | 1.82E-52 | -1.69E-46 |
| MS.gene060762 | MS.gene73545 | 0.847788 | 9.26E-60 | -1.69E-46 |
| MS.gene060778 | MS.gene73545 | 0.877449 | 6.23E-69 | -1.69E-46 |
| MS.gene06077 | MS.gene73545 | 0.904893 | 7.62E-80 | -1.69E-46 |
| MS.gene06092 | MS.gene73545 | 0.804253 | 2.36E-49 | -1.69E-46 |
| MS.gene060982 | MS.gene73545 | 0.881525 | 2.23E-70 | -1.69E-46 |
| MS.gene061044 | MS.gene73545 | -0.838146 | 3.42E-57 | -1.69E-46 |
| MS.gene061150 | MS.gene73545 | 0.816587 | 5.12E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73545.t1 | MTR_1g059970 | 94.757 | 267 | 14 | 0 | 32 | 298 | 67 | 333 | 0.0 | 525 |
| MS.gene73545.t1 | MTR_1g059970 | 93.607 | 219 | 14 | 0 | 32 | 250 | 69 | 287 | 1.80e-151 | 426 |
| MS.gene73545.t1 | MTR_1g059970 | 42.000 | 100 | 56 | 2 | 198 | 296 | 117 | 215 | 1.05e-16 | 79.0 |
| MS.gene73545.t1 | MTR_3g005720 | 40.271 | 221 | 124 | 4 | 82 | 297 | 102 | 319 | 2.15e-49 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73545.t1 | AT5G03880 | 72.759 | 290 | 79 | 0 | 8 | 297 | 49 | 338 | 2.94e-162 | 455 |
| MS.gene73545.t1 | AT4G10000 | 42.254 | 213 | 115 | 3 | 90 | 297 | 119 | 328 | 7.41e-52 | 173 |
| MS.gene73545.t1 | AT4G10000 | 42.254 | 213 | 115 | 3 | 90 | 297 | 119 | 328 | 7.41e-52 | 173 |
Find 59 sgRNAs with CRISPR-Local
Find 253 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAACCTTCGCACGAAAATT+TGG | 0.131482 | 1.4:+48989234 | None:intergenic |
| AGACGAAATAATTAAGTATT+TGG | 0.152096 | 1.4:-48988852 | MS.gene73545:CDS |
| CTCCGAAGCCACTTAAATTA+TGG | 0.160254 | 1.4:-48988025 | MS.gene73545:CDS |
| CTCTTTCTCATTTGTTTCTA+AGG | 0.160569 | 1.4:-48990528 | MS.gene73545:CDS |
| CGAAAATTTGGGCCGTTTCT+TGG | 0.207802 | 1.4:+48989246 | None:intergenic |
| TAGAGAAATAGTTGCTGTTT+TGG | 0.248195 | 1.4:-48989295 | MS.gene73545:CDS |
| GACAAGACTCTTGAGATTCT+TGG | 0.268285 | 1.4:-48991753 | MS.gene73545:CDS |
| GTCCATACCTTTCGACAAAA+TGG | 0.270523 | 1.4:+48989439 | None:intergenic |
| TGATATAGAATATTTCGTTT+TGG | 0.299080 | 1.4:+48987468 | None:intergenic |
| AAGTATTTGGTTGGAACATA+TGG | 0.302490 | 1.4:-48988839 | MS.gene73545:intron |
| TTGCTCTTTCGCTTTGCTAC+TGG | 0.307870 | 1.4:-48991717 | MS.gene73545:CDS |
| CAACCTTCGCACGAAAATTT+GGG | 0.318898 | 1.4:+48989235 | None:intergenic |
| GAAAATTTGGGCCGTTTCTT+GGG | 0.320564 | 1.4:+48989247 | None:intergenic |
| TACATTGAAACGCCAGTGTT+TGG | 0.321278 | 1.4:+48988881 | None:intergenic |
| GATCTTATAGCAAAGCGTTT+AGG | 0.329835 | 1.4:+48991777 | None:intergenic |
| ATAGCAAAGCGTTTAGGTTC+AGG | 0.338103 | 1.4:+48991783 | None:intergenic |
| AATATTCTATATCAGAAAAC+TGG | 0.378479 | 1.4:-48987459 | MS.gene73545:CDS |
| TCAGAAAACTGGACATTTCC+AGG | 0.380253 | 1.4:-48987448 | MS.gene73545:intron |
| ACGCGAAGTACTTGTGGAAT+TGG | 0.388738 | 1.4:-48987650 | MS.gene73545:CDS |
| TCCGAAGCCACTTAAATTAT+GGG | 0.388850 | 1.4:-48988024 | MS.gene73545:CDS |
| ACATTGAAACGCCAGTGTTT+GGG | 0.402036 | 1.4:+48988882 | None:intergenic |
| AGTTTAAAAGCATATTCATT+TGG | 0.406017 | 1.4:+48990494 | None:intergenic |
| TTCAAATTCATAGATCTCAA+TGG | 0.411901 | 1.4:+48989618 | None:intergenic |
| GCCCATAATTTAAGTGGCTT+CGG | 0.413395 | 1.4:+48988023 | None:intergenic |
| GAAATAATTAAGTATTTGGT+TGG | 0.416181 | 1.4:-48988848 | MS.gene73545:CDS |
| GGAGACAATCTTACCATGTA+AGG | 0.426269 | 1.4:+48989186 | None:intergenic |
| TAGATCTCAATGGGCTTCTC+TGG | 0.426617 | 1.4:+48989628 | None:intergenic |
| ATTCCTCTTACTTTATCGCT+TGG | 0.434103 | 1.4:-48988352 | MS.gene73545:CDS |
| TCAAATTCATAGATCTCAAT+GGG | 0.434170 | 1.4:+48989619 | None:intergenic |
| GTAAAAGAAACATCAAAGAT+AGG | 0.441714 | 1.4:-48989658 | MS.gene73545:CDS |
| TCATATGCCCATAATTTAAG+TGG | 0.444995 | 1.4:+48988017 | None:intergenic |
| TTCTATCCTTGCCCAAGAAA+CGG | 0.451827 | 1.4:-48989258 | MS.gene73545:CDS |
| AACATTTCTACACCAGTGTT+CGG | 0.452912 | 1.4:+48987303 | None:intergenic |
| AATCCAAGCGATAAAGTAAG+AGG | 0.457533 | 1.4:+48988349 | None:intergenic |
| TTAAAAGCATATTCATTTGG+TGG | 0.458779 | 1.4:+48990497 | None:intergenic |
| CGTGCGAAGGTTGTTGAGAT+GGG | 0.462625 | 1.4:-48989225 | MS.gene73545:CDS |
| ACTTAAATTATGGGCATATG+AGG | 0.464685 | 1.4:-48988015 | MS.gene73545:intron |
| TAGCAAAGCGTTTAGGTTCA+GGG | 0.474563 | 1.4:+48991784 | None:intergenic |
| TCGTGCGAAGGTTGTTGAGA+TGG | 0.480686 | 1.4:-48989226 | MS.gene73545:CDS |
| AGCAAAGCGTTTAGGTTCAG+GGG | 0.498149 | 1.4:+48991785 | None:intergenic |
| AATCGTACGCGAAGTACTTG+TGG | 0.503393 | 1.4:-48987656 | MS.gene73545:CDS |
| TAAAACACAGTTCCCTTACA+TGG | 0.513518 | 1.4:-48989199 | MS.gene73545:intron |
| GGCTTCGGAGGTAACTTCGC+TGG | 0.519884 | 1.4:+48988038 | None:intergenic |
| AGTAGCAAAGCGAAAGAGCA+AGG | 0.520076 | 1.4:+48991719 | None:intergenic |
| TTTGGGCCGTTTCTTGGGCA+AGG | 0.527655 | 1.4:+48989252 | None:intergenic |
| TTGAGATCTATGAATTTGAA+AGG | 0.546792 | 1.4:-48989615 | MS.gene73545:intron |
| AAGGATAGAAAAGAATATCA+AGG | 0.558191 | 1.4:+48989271 | None:intergenic |
| CAAAGCGAAAGAGCAAGGGA+AGG | 0.562207 | 1.4:+48991724 | None:intergenic |
| CATAATTTAAGTGGCTTCGG+AGG | 0.566075 | 1.4:+48988026 | None:intergenic |
| TTTCATTGTAGTTGTGCTAG+GGG | 0.574387 | 1.4:-48987495 | MS.gene73545:intron |
| TGTTGATGATGAAGTTGAAG+TGG | 0.581369 | 1.4:+48991842 | None:intergenic |
| AAAGCGAAAGAGCAAGGGAA+GGG | 0.581925 | 1.4:+48991725 | None:intergenic |
| GTAGCAAAGCGAAAGAGCAA+GGG | 0.611002 | 1.4:+48991720 | None:intergenic |
| ACTTACTTGACAAGCAAATG+TGG | 0.620078 | 1.4:+48987622 | None:intergenic |
| GAGACAATCTTACCATGTAA+GGG | 0.623184 | 1.4:+48989187 | None:intergenic |
| TATGCTTGGTCGCATTACAA+AGG | 0.624227 | 1.4:-48988208 | MS.gene73545:intron |
| TATTAGGTTGACCCAAACAC+TGG | 0.638176 | 1.4:-48988893 | MS.gene73545:intron |
| GCAAAGCGTTTAGGTTCAGG+GGG | 0.639513 | 1.4:+48991786 | None:intergenic |
| GCGAAGGTTGTTGAGATGGG+TGG | 0.681372 | 1.4:-48989222 | MS.gene73545:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTAAAATTTATGTC+AGG | + | chr1.4:48988545-48988564 | None:intergenic | 10.0% |
| !! | AAAATACAAATTGTATATAA+CGG | + | chr1.4:48989306-48989325 | None:intergenic | 10.0% |
| !! | TTCAATAAATTAAAAAAACT+CGG | + | chr1.4:48988514-48988533 | None:intergenic | 10.0% |
| !! | TACAAAAAATAAATATTGAG+CGG | + | chr1.4:48989545-48989564 | None:intergenic | 15.0% |
| !! | TACACATTAATTTCAATATT+TGG | - | chr1.4:48990981-48991000 | MS.gene73545:intron | 15.0% |
| !! | TATAACTTATAATCTAGTAA+TGG | + | chr1.4:48991189-48991208 | None:intergenic | 15.0% |
| !! | TCAAATAGTTATTAAATAAC+TGG | - | chr1.4:48988858-48988877 | MS.gene73545:CDS | 15.0% |
| !!! | AATTAATTTTCTCTCTTAAA+CGG | + | chr1.4:48987523-48987542 | None:intergenic | 15.0% |
| !!! | ATGTGTATATTTTCATAAAT+TGG | + | chr1.4:48991712-48991731 | None:intergenic | 15.0% |
| !!! | ATTAAGAAATAACAATTTTC+TGG | - | chr1.4:48990205-48990224 | MS.gene73545:intron | 15.0% |
| !!! | GTAATTTTACATTAACAATA+TGG | - | chr1.4:48989562-48989581 | MS.gene73545:intron | 15.0% |
| !!! | TAGTAATTAGTATTAATTTG+TGG | - | chr1.4:48987836-48987855 | MS.gene73545:intron | 15.0% |
| !! | AAAAATCAACAAAACAAAGT+TGG | - | chr1.4:48989962-48989981 | MS.gene73545:intron | 20.0% |
| !! | AAATGAAAAATGAAATACAG+AGG | + | chr1.4:48989387-48989406 | None:intergenic | 20.0% |
| !! | AATATTAAATAACCATCACA+AGG | + | chr1.4:48990174-48990193 | None:intergenic | 20.0% |
| !! | AATATTCTATATCAGAAAAC+TGG | - | chr1.4:48991662-48991681 | MS.gene73545:intron | 20.0% |
| !! | ACAAAAAATAAATATTGAGC+GGG | + | chr1.4:48989544-48989563 | None:intergenic | 20.0% |
| !! | ACAACAATTTAACAAAATCA+CGG | + | chr1.4:48988018-48988037 | None:intergenic | 20.0% |
| !! | ACATCTATTGTATGTTAATT+AGG | - | chr1.4:48988828-48988847 | MS.gene73545:intron | 20.0% |
| !! | ACTAAACTAAGAAATACATA+TGG | + | chr1.4:48991543-48991562 | None:intergenic | 20.0% |
| !! | AGACGAAATAATTAAGTATT+TGG | - | chr1.4:48990269-48990288 | MS.gene73545:intron | 20.0% |
| !! | ATCAATGATACAATTTATTC+AGG | - | chr1.4:48991426-48991445 | MS.gene73545:intron | 20.0% |
| !! | CTAGATTATAAGTTATAGAT+TGG | - | chr1.4:48991192-48991211 | MS.gene73545:intron | 20.0% |
| !! | CTATTCTTTAATCTTCATAA+TGG | + | chr1.4:48989605-48989624 | None:intergenic | 20.0% |
| !! | GAAATAATTAAGTATTTGGT+TGG | - | chr1.4:48990273-48990292 | MS.gene73545:intron | 20.0% |
| !! | TAACTAATTCAAAGTCAAAT+TGG | - | chr1.4:48987625-48987644 | MS.gene73545:intron | 20.0% |
| !! | TATAGCTAGTAATTTCATTT+GGG | + | chr1.4:48989143-48989162 | None:intergenic | 20.0% |
| !! | TCAATGATACAATTTATTCA+GGG | - | chr1.4:48991427-48991446 | MS.gene73545:intron | 20.0% |
| !! | TGTGATGGTTATTTAATATT+TGG | - | chr1.4:48990174-48990193 | MS.gene73545:intron | 20.0% |
| !! | TTAATCAAAAAGCTAACAAA+AGG | + | chr1.4:48988974-48988993 | None:intergenic | 20.0% |
| !!! | AAGTTTTATAAGCTCTATTT+AGG | - | chr1.4:48990434-48990453 | MS.gene73545:intron | 20.0% |
| !!! | AATAACAATTTTCTGGTATT+AGG | - | chr1.4:48990212-48990231 | MS.gene73545:intron | 20.0% |
| !!! | AATAACATGTGTTAGATTTT+AGG | - | chr1.4:48990366-48990385 | MS.gene73545:intron | 20.0% |
| !!! | ACTTTTTGTACTTATGTTAA+TGG | - | chr1.4:48988724-48988743 | MS.gene73545:intron | 20.0% |
| !!! | AGTTTAAAAGCATATTCATT+TGG | + | chr1.4:48988630-48988649 | None:intergenic | 20.0% |
| !!! | AGTTTCTTGTTATGATTTTT+TGG | - | chr1.4:48989986-48990005 | MS.gene73545:intron | 20.0% |
| !!! | ATTTCTTAGTTTAGTCTTAT+TGG | - | chr1.4:48991548-48991567 | MS.gene73545:intron | 20.0% |
| !!! | GATATAGAATATTTCGTTTT+GGG | + | chr1.4:48991655-48991674 | None:intergenic | 20.0% |
| !!! | GTTTCTTGTTATGATTTTTT+GGG | - | chr1.4:48989987-48990006 | MS.gene73545:intron | 20.0% |
| !!! | TATTAATTTGTGGATTGATT+TGG | - | chr1.4:48987846-48987865 | MS.gene73545:intron | 20.0% |
| !!! | TCATTGTTTTTGAAATTTCA+GGG | - | chr1.4:48991047-48991066 | MS.gene73545:intron | 20.0% |
| !!! | TGATATAGAATATTTCGTTT+TGG | + | chr1.4:48991656-48991675 | None:intergenic | 20.0% |
| !!! | TTAAGAAATCTGTTTTGAAT+TGG | - | chr1.4:48988407-48988426 | MS.gene73545:intron | 20.0% |
| !!! | TTATTTTTGTTTGAAGAAAG+AGG | - | chr1.4:48988372-48988391 | MS.gene73545:intron | 20.0% |
| !!! | TTCATTGTTTTTGAAATTTC+AGG | - | chr1.4:48991046-48991065 | MS.gene73545:intron | 20.0% |
| !!! | TTGTTTTGTTGATTTTTTTG+AGG | + | chr1.4:48989959-48989978 | None:intergenic | 20.0% |
| !!! | TTTTTCTAAAATCAACAGTA+CGG | + | chr1.4:48988438-48988457 | None:intergenic | 20.0% |
| ! | AAAGCACAAAGTGATTAAAA+TGG | + | chr1.4:48989173-48989192 | None:intergenic | 25.0% |
| ! | AAGCTTAATAGAACGATAAA+TGG | - | chr1.4:48988214-48988233 | MS.gene73545:CDS | 25.0% |
| ! | AAGGATAGAAAAGAATATCA+AGG | + | chr1.4:48989853-48989872 | None:intergenic | 25.0% |
| ! | ACTTATAATCTAGTAATGGT+TGG | + | chr1.4:48991185-48991204 | None:intergenic | 25.0% |
| ! | AGAAATTAGTCAACACTAAA+CGG | - | chr1.4:48987728-48987747 | MS.gene73545:intron | 25.0% |
| ! | ATGTAGATAACTCAAAAAGT+AGG | + | chr1.4:48988345-48988364 | None:intergenic | 25.0% |
| ! | ATTACAAAGTGGTTATATCA+AGG | - | chr1.4:48991348-48991367 | MS.gene73545:intron | 25.0% |
| ! | ATTGGAATCAATAAAATACC+TGG | + | chr1.4:48991694-48991713 | None:intergenic | 25.0% |
| ! | ATTTGACATACTTGAAAACA+TGG | - | chr1.4:48991258-48991277 | MS.gene73545:intron | 25.0% |
| ! | CAAATGAAATTACTAGCTAT+AGG | - | chr1.4:48989142-48989161 | MS.gene73545:intron | 25.0% |
| ! | CAACAATTTAACAAAATCAC+GGG | + | chr1.4:48988017-48988036 | None:intergenic | 25.0% |
| ! | CTATAGCTAGTAATTTCATT+TGG | + | chr1.4:48989144-48989163 | None:intergenic | 25.0% |
| ! | GTAAAAGAAACATCAAAGAT+AGG | - | chr1.4:48989463-48989482 | MS.gene73545:intron | 25.0% |
| ! | GTTTGTAATTGTTTGATAGA+GGG | - | chr1.4:48987925-48987944 | MS.gene73545:intron | 25.0% |
| ! | TAGTGTAATTCTATGTATGA+TGG | - | chr1.4:48987594-48987613 | MS.gene73545:intron | 25.0% |
| ! | TCAAATTCATAGATCTCAAT+GGG | + | chr1.4:48989505-48989524 | None:intergenic | 25.0% |
| ! | TGAGCATCAAAATAAAAGAA+TGG | + | chr1.4:48988667-48988686 | None:intergenic | 25.0% |
| ! | TTCAAATTCATAGATCTCAA+TGG | + | chr1.4:48989506-48989525 | None:intergenic | 25.0% |
| ! | TTCAATTCGTAGTAAATACT+AGG | + | chr1.4:48987564-48987583 | None:intergenic | 25.0% |
| ! | TTCTTTAATAATGTTCTTCG+TGG | - | chr1.4:48989644-48989663 | MS.gene73545:CDS | 25.0% |
| ! | TTGAGATCTATGAATTTGAA+AGG | - | chr1.4:48989506-48989525 | MS.gene73545:intron | 25.0% |
| !! | AGTATTTTACCACATACAAA+GGG | - | chr1.4:48990550-48990569 | MS.gene73545:intron | 25.0% |
| !! | ATACTCAATTCTGAAAAGTA+TGG | + | chr1.4:48990535-48990554 | None:intergenic | 25.0% |
| !! | ATGTTAATGGATAGATTACT+AGG | - | chr1.4:48988737-48988756 | MS.gene73545:intron | 25.0% |
| !! | GAATATGCTTTTAAACTTTC+TGG | - | chr1.4:48988633-48988652 | MS.gene73545:intron | 25.0% |
| !! | GTATTTTTCTCACAATGTTA+TGG | + | chr1.4:48990624-48990643 | None:intergenic | 25.0% |
| !! | GTTATATCAAGGCTTTTTAT+AGG | - | chr1.4:48991359-48991378 | MS.gene73545:intron | 25.0% |
| !! | TGTTAATGGATAGATTACTA+GGG | - | chr1.4:48988738-48988757 | MS.gene73545:intron | 25.0% |
| !! | TTAAAAGCATATTCATTTGG+TGG | + | chr1.4:48988627-48988646 | None:intergenic | 25.0% |
| !! | TTAACAACTGTTGCTTATTA+TGG | - | chr1.4:48988934-48988953 | MS.gene73545:intron | 25.0% |
| !! | TTTATCGCTTGGATTTTTAA+CGG | - | chr1.4:48990780-48990799 | MS.gene73545:intron | 25.0% |
| !!! | AGTAATTTCTAGAACCTATA+GGG | + | chr1.4:48990671-48990690 | None:intergenic | 25.0% |
| !!! | ATTAGTTTTTATCACCAGAA+AGG | - | chr1.4:48990824-48990843 | MS.gene73545:intron | 25.0% |
| !!! | TCAATAGAGTCCTTTATTTT+GGG | - | chr1.4:48987806-48987825 | MS.gene73545:intron | 25.0% |
| AACTCGGCTTATAAATTATG+TGG | + | chr1.4:48988498-48988517 | None:intergenic | 30.0% | |
| AAGTATTTGGTTGGAACATA+TGG | - | chr1.4:48990282-48990301 | MS.gene73545:intron | 30.0% | |
| AAGTGACTAGAGAGATTTAA+GGG | - | chr1.4:48987962-48987981 | MS.gene73545:intron | 30.0% | |
| AAGTTAATGCAAAAACTAGC+CGG | - | chr1.4:48990060-48990079 | MS.gene73545:intron | 30.0% | |
| ACACTACAATAAGAAGAGAA+TGG | + | chr1.4:48987463-48987482 | None:intergenic | 30.0% | |
| ACTAAAGTGAGTAGTATCAA+TGG | + | chr1.4:48988047-48988066 | None:intergenic | 30.0% | |
| ACTTAAATTATGGGCATATG+AGG | - | chr1.4:48991106-48991125 | MS.gene73545:intron | 30.0% | |
| ATGGATGATGTTAATTCTGA+TGG | - | chr1.4:48991764-48991783 | MS.gene73545:CDS | 30.0% | |
| ATGGATTCATAAACAACAAC+CGG | + | chr1.4:48990082-48990101 | None:intergenic | 30.0% | |
| CATGACATGGTACTTATTAA+TGG | - | chr1.4:48991745-48991764 | MS.gene73545:CDS | 30.0% | |
| CCTTGTTAACATTAGTAATG+CGG | - | chr1.4:48989426-48989445 | MS.gene73545:intron | 30.0% | |
| CGTTTGTAATTGTTTGATAG+AGG | - | chr1.4:48987924-48987943 | MS.gene73545:intron | 30.0% | |
| CTATTTAGGTGATATCTTCT+AGG | - | chr1.4:48990448-48990467 | MS.gene73545:intron | 30.0% | |
| GAATTCGTTCATTAAGCATT+AGG | + | chr1.4:48991159-48991178 | None:intergenic | 30.0% | |
| GACATGATGACTAAAAGAAA+AGG | - | chr1.4:48987772-48987791 | MS.gene73545:intron | 30.0% | |
| GATGTTAATTCTGATGGTTA+TGG | - | chr1.4:48991770-48991789 | MS.gene73545:CDS | 30.0% | |
| GCATCAAAATAAAAGAATGG+AGG | + | chr1.4:48988664-48988683 | None:intergenic | 30.0% | |
| GCTTATAAATTATGTGGTGT+TGG | + | chr1.4:48988492-48988511 | None:intergenic | 30.0% | |
| TAACTATCTATGTAGAGTGA+TGG | - | chr1.4:48988142-48988161 | MS.gene73545:intron | 30.0% | |
| TAATAATGTTCTTCGTGGAT+CGG | - | chr1.4:48989649-48989668 | MS.gene73545:CDS | 30.0% | |
| TCATATGCCCATAATTTAAG+TGG | + | chr1.4:48991107-48991126 | None:intergenic | 30.0% | |
| TCTTGCTTATGGAGAAAATT+TGG | - | chr1.4:48987660-48987679 | MS.gene73545:CDS | 30.0% | |
| TCTTTACAAACTTCATGACA+TGG | - | chr1.4:48991732-48991751 | MS.gene73545:CDS | 30.0% | |
| TGAGTAAAGTGATTACAAAG+TGG | - | chr1.4:48991337-48991356 | MS.gene73545:intron | 30.0% | |
| TTGAAAATACTGAACATCGA+TGG | - | chr1.4:48989191-48989210 | MS.gene73545:intron | 30.0% | |
| TTTAATCTTCATAATGGCTG+TGG | + | chr1.4:48989599-48989618 | None:intergenic | 30.0% | |
| ! | AAACTAATGATAGTGATGTC+AGG | + | chr1.4:48990812-48990831 | None:intergenic | 30.0% |
| ! | ACTCGCAATAGGATTATTTT+TGG | + | chr1.4:48990710-48990729 | None:intergenic | 30.0% |
| ! | AGCAAACATTCTTTTTGTTG+TGG | - | chr1.4:48989780-48989799 | MS.gene73545:intron | 30.0% |
| ! | ATTTTCATTGTAGTTGTGCT+AGG | - | chr1.4:48991624-48991643 | MS.gene73545:intron | 30.0% |
| ! | CTCATACACATGTTGTTTAT+TGG | + | chr1.4:48990497-48990516 | None:intergenic | 30.0% |
| ! | GAGTATTTTACCACATACAA+AGG | - | chr1.4:48990549-48990568 | MS.gene73545:intron | 30.0% |
| ! | GTATCTTTTCTTTCTGTCAT+GGG | + | chr1.4:48988263-48988282 | None:intergenic | 30.0% |
| ! | GTATTTTACCACATACAAAG+GGG | - | chr1.4:48990551-48990570 | MS.gene73545:intron | 30.0% |
| ! | TATTTCCCTTTGCTATGTAA+TGG | - | chr1.4:48990948-48990967 | MS.gene73545:intron | 30.0% |
| ! | TATTTTACCACATACAAAGG+GGG | - | chr1.4:48990552-48990571 | MS.gene73545:intron | 30.0% |
| ! | TCTTTTAGTCATCATGTCAT+AGG | + | chr1.4:48987770-48987789 | None:intergenic | 30.0% |
| ! | TGTATCTTTTCTTTCTGTCA+TGG | + | chr1.4:48988264-48988283 | None:intergenic | 30.0% |
| ! | TTTTCATTGTAGTTGTGCTA+GGG | - | chr1.4:48991625-48991644 | MS.gene73545:intron | 30.0% |
| !! | CAGTAATTTCTAGAACCTAT+AGG | + | chr1.4:48990672-48990691 | None:intergenic | 30.0% |
| !! | CTATAGGTTCTAGAAATTAC+TGG | - | chr1.4:48990670-48990689 | MS.gene73545:intron | 30.0% |
| !! | CTCAATAGAGTCCTTTATTT+TGG | - | chr1.4:48987805-48987824 | MS.gene73545:intron | 30.0% |
| !! | CTCTTTCTCATTTGTTTCTA+AGG | - | chr1.4:48988593-48988612 | MS.gene73545:intron | 30.0% |
| !!! | CAATAGAGTCCTTTATTTTG+GGG | - | chr1.4:48987807-48987826 | MS.gene73545:intron | 30.0% |
| !!! | GCTTAATATTTTGACTGTAC+AGG | - | chr1.4:48989802-48989821 | MS.gene73545:intron | 30.0% |
| !!! | TAGAGAAATAGTTGCTGTTT+TGG | - | chr1.4:48989826-48989845 | MS.gene73545:intron | 30.0% |
| AAATTATGGGCATATGAGGT+TGG | - | chr1.4:48991110-48991129 | MS.gene73545:intron | 35.0% | |
| AACATTAGTAATGCGGTTTC+AGG | - | chr1.4:48989433-48989452 | MS.gene73545:intron | 35.0% | |
| AACATTTCTACACCAGTGTT+CGG | + | chr1.4:48991821-48991840 | None:intergenic | 35.0% | |
| AATAATGTTCTTCGTGGATC+GGG | - | chr1.4:48989650-48989669 | MS.gene73545:CDS | 35.0% | |
| AATACTGAACATCGATGGTT+TGG | - | chr1.4:48989196-48989215 | MS.gene73545:intron | 35.0% | |
| AATCCAAGCGATAAAGTAAG+AGG | + | chr1.4:48990775-48990794 | None:intergenic | 35.0% | |
| AATGATACAGTTCACCTTTC+TGG | + | chr1.4:48990841-48990860 | None:intergenic | 35.0% | |
| AATGTCAAAACACTCGCAAT+AGG | + | chr1.4:48990721-48990740 | None:intergenic | 35.0% | |
| ACATTCATTATGTGTTCTGC+AGG | - | chr1.4:48990736-48990755 | MS.gene73545:intron | 35.0% | |
| ACTTACTTGACAAGCAAATG+TGG | + | chr1.4:48991502-48991521 | None:intergenic | 35.0% | |
| ATTCCTCTTACTTTATCGCT+TGG | - | chr1.4:48990769-48990788 | MS.gene73545:intron | 35.0% | |
| CATGTTGTCTATGCATGAAA+AGG | - | chr1.4:48989038-48989057 | MS.gene73545:intron | 35.0% | |
| CCGCATTACTAATGTTAACA+AGG | + | chr1.4:48989429-48989448 | None:intergenic | 35.0% | |
| CTAACTCAACCCTACAAAAT+CGG | - | chr1.4:48990390-48990409 | MS.gene73545:intron | 35.0% | |
| CTACATTCACCCCAAAATAA+AGG | + | chr1.4:48987819-48987838 | None:intergenic | 35.0% | |
| GAAGTGACTAGAGAGATTTA+AGG | - | chr1.4:48987961-48987980 | MS.gene73545:intron | 35.0% | |
| GAGACAATCTTACCATGTAA+GGG | + | chr1.4:48989937-48989956 | None:intergenic | 35.0% | |
| GATGACTAAAAGAAAAGGAC+AGG | - | chr1.4:48987777-48987796 | MS.gene73545:intron | 35.0% | |
| GCAATTTCAGTGGCTTAATT+TGG | - | chr1.4:48988169-48988188 | MS.gene73545:intron | 35.0% | |
| GCTTATGGAGAAAATTTGGT+TGG | - | chr1.4:48987664-48987683 | MS.gene73545:CDS | 35.0% | |
| GGTTCCAAAGAAAATCTCTT+TGG | - | chr1.4:48989059-48989078 | MS.gene73545:intron | 35.0% | |
| TAAAACACAGTTCCCTTACA+TGG | - | chr1.4:48989922-48989941 | MS.gene73545:intron | 35.0% | |
| TCCGAAGCCACTTAAATTAT+GGG | - | chr1.4:48991097-48991116 | MS.gene73545:intron | 35.0% | |
| TCGTATTCTATGCTCAATCT+AGG | + | chr1.4:48988106-48988125 | None:intergenic | 35.0% | |
| TGATGGTAAAGCAATTTCAG+TGG | - | chr1.4:48988159-48988178 | MS.gene73545:intron | 35.0% | |
| TTGCTTATTACACCTTGTGA+TGG | - | chr1.4:48990159-48990178 | MS.gene73545:intron | 35.0% | |
| TTGGGCATCTTGAAATAGAT+GGG | - | chr1.4:48990005-48990024 | MS.gene73545:intron | 35.0% | |
| TTTCATTGTAGTTGTGCTAG+GGG | - | chr1.4:48991626-48991645 | MS.gene73545:intron | 35.0% | |
| TTTCTGTTCGAGAACCTATT+AGG | + | chr1.4:48987713-48987732 | None:intergenic | 35.0% | |
| TTTGGGCATCTTGAAATAGA+TGG | - | chr1.4:48990004-48990023 | MS.gene73545:intron | 35.0% | |
| ! | ACAGCCAAAGAGATTTTCTT+TGG | + | chr1.4:48989066-48989085 | None:intergenic | 35.0% |
| ! | AGAGCATTAGTAATCCCTAT+AGG | - | chr1.4:48990654-48990673 | MS.gene73545:intron | 35.0% |
| ! | ATAATGTGCTACTGTGCTTT+GGG | + | chr1.4:48988807-48988826 | None:intergenic | 35.0% |
| ! | ATCTCTTTGGCTGTCTTATT+TGG | - | chr1.4:48989072-48989091 | MS.gene73545:intron | 35.0% |
| ! | GATCTTATAGCAAAGCGTTT+AGG | + | chr1.4:48987347-48987366 | None:intergenic | 35.0% |
| ! | TTTCAGTGGCTTAATTTGGT+TGG | - | chr1.4:48988173-48988192 | MS.gene73545:intron | 35.0% |
| !! | ATCTTACGAACCGATTTTGT+AGG | + | chr1.4:48990403-48990422 | None:intergenic | 35.0% |
| !! | CAAAATCGGTTCGTAAGATT+AGG | - | chr1.4:48990404-48990423 | MS.gene73545:intron | 35.0% |
| !! | CTAATACTGACTCTTGCTTA+TGG | - | chr1.4:48987649-48987668 | MS.gene73545:CDS | 35.0% |
| !! | GGTATGGACTATTGTTTTGT+AGG | - | chr1.4:48989696-48989715 | MS.gene73545:intron | 35.0% |
| !! | TCTTACGAACCGATTTTGTA+GGG | + | chr1.4:48990402-48990421 | None:intergenic | 35.0% |
| !! | TGTTGATGATGAAGTTGAAG+TGG | + | chr1.4:48987282-48987301 | None:intergenic | 35.0% |
| !!! | AATTATGTGGTGTTGGCTTT+TGG | + | chr1.4:48988485-48988504 | None:intergenic | 35.0% |
| !!! | GTATTTCTGCTGTTTTAGTG+TGG | - | chr1.4:48989262-48989281 | MS.gene73545:CDS | 35.0% |
| !!! | TTTTTGCAGTCATTGACTTG+CGG | - | chr1.4:48990884-48990903 | MS.gene73545:intron | 35.0% |
| AACCTATTAGGCACACAATG+TGG | + | chr1.4:48987701-48987720 | None:intergenic | 40.0% | |
| AATCGTTGTAAGATGCGAGA+TGG | + | chr1.4:48990101-48990120 | None:intergenic | 40.0% | |
| AATGATTCCCCCTTTGTATG+TGG | + | chr1.4:48990562-48990581 | None:intergenic | 40.0% | |
| ACAACCTTCGCACGAAAATT+TGG | + | chr1.4:48989890-48989909 | None:intergenic | 40.0% | |
| ACATTGAAACGCCAGTGTTT+GGG | + | chr1.4:48990242-48990261 | None:intergenic | 40.0% | |
| ACCTATTAGGCACACAATGT+GGG | + | chr1.4:48987700-48987719 | None:intergenic | 40.0% | |
| AGATTTAAGGGTGGAAATCG+TGG | - | chr1.4:48987974-48987993 | MS.gene73545:intron | 40.0% | |
| AGTAGACAATAGACTCCTCA+GGG | - | chr1.4:48987881-48987900 | MS.gene73545:intron | 40.0% | |
| CAACCTTCGCACGAAAATTT+GGG | + | chr1.4:48989889-48989908 | None:intergenic | 40.0% | |
| CATAATTTAAGTGGCTTCGG+AGG | + | chr1.4:48991098-48991117 | None:intergenic | 40.0% | |
| CCCTTCCATTACATAGCAAA+GGG | + | chr1.4:48990956-48990975 | None:intergenic | 40.0% | |
| CTCCGAAGCCACTTAAATTA+TGG | - | chr1.4:48991096-48991115 | MS.gene73545:intron | 40.0% | |
| GAAAATTTGGGCCGTTTCTT+GGG | + | chr1.4:48989877-48989896 | None:intergenic | 40.0% | |
| GACAAGACTCTTGAGATTCT+TGG | - | chr1.4:48987368-48987387 | MS.gene73545:intron | 40.0% | |
| GATTTAAGGGTGGAAATCGT+GGG | - | chr1.4:48987975-48987994 | MS.gene73545:intron | 40.0% | |
| GCCCATAATTTAAGTGGCTT+CGG | + | chr1.4:48991101-48991120 | None:intergenic | 40.0% | |
| GGAGACAATCTTACCATGTA+AGG | + | chr1.4:48989938-48989957 | None:intergenic | 40.0% | |
| GTCCATACCTTTCGACAAAA+TGG | + | chr1.4:48989685-48989704 | None:intergenic | 40.0% | |
| GTGTTCGGATCTTCCAAAAA+AGG | + | chr1.4:48991806-48991825 | None:intergenic | 40.0% | |
| TACATTGAAACGCCAGTGTT+TGG | + | chr1.4:48990243-48990262 | None:intergenic | 40.0% | |
| TATGCTTGGTCGCATTACAA+AGG | - | chr1.4:48990913-48990932 | MS.gene73545:intron | 40.0% | |
| TCAGAAAACTGGACATTTCC+AGG | - | chr1.4:48991673-48991692 | MS.gene73545:intron | 40.0% | |
| TCATTAAGCATTAGGATGCG+TGG | + | chr1.4:48991151-48991170 | None:intergenic | 40.0% | |
| TCCCTTCCATTACATAGCAA+AGG | + | chr1.4:48990957-48990976 | None:intergenic | 40.0% | |
| TCGCATAACAGTGACTTAGA+CGG | - | chr1.4:48988884-48988903 | MS.gene73545:CDS | 40.0% | |
| TGACTAGAGAGATTTAAGGG+TGG | - | chr1.4:48987965-48987984 | MS.gene73545:intron | 40.0% | |
| TGATACAGTCAGTTACTTGC+TGG | + | chr1.4:48991410-48991429 | None:intergenic | 40.0% | |
| TTCTATCCTTGCCCAAGAAA+CGG | - | chr1.4:48989863-48989882 | MS.gene73545:intron | 40.0% | |
| TTCTGATGGTTATGGTTCAC+AGG | - | chr1.4:48991778-48991797 | MS.gene73545:CDS | 40.0% | |
| ! | AAGCAGTTTAGCTTAGTGAC+TGG | + | chr1.4:48990035-48990054 | None:intergenic | 40.0% |
| ! | ATAGCAAAGCGTTTAGGTTC+AGG | + | chr1.4:48987341-48987360 | None:intergenic | 40.0% |
| ! | CCCTTTGCTATGTAATGGAA+GGG | - | chr1.4:48990953-48990972 | MS.gene73545:intron | 40.0% |
| ! | CTACTGGAGTTTTCGTTTCT+GGG | - | chr1.4:48987420-48987439 | MS.gene73545:intron | 40.0% |
| ! | GATAATGTGCTACTGTGCTT+TGG | + | chr1.4:48988808-48988827 | None:intergenic | 40.0% |
| ! | GTCCATTTTGTCGAAAGGTA+TGG | - | chr1.4:48989680-48989699 | MS.gene73545:intron | 40.0% |
| ! | TAATGTGCTACTGTGCTTTG+GGG | + | chr1.4:48988806-48988825 | None:intergenic | 40.0% |
| ! | TAGCAAAGCGTTTAGGTTCA+GGG | + | chr1.4:48987340-48987359 | None:intergenic | 40.0% |
| ! | TCCCTTTGCTATGTAATGGA+AGG | - | chr1.4:48990952-48990971 | MS.gene73545:intron | 40.0% |
| !! | ATGAGAAAGAGTACCTGCAA+AGG | + | chr1.4:48988584-48988603 | None:intergenic | 40.0% |
| !! | TATTAGGTTGACCCAAACAC+TGG | - | chr1.4:48990228-48990247 | MS.gene73545:intron | 40.0% |
| !! | TTTTTGGAAGATCCGAACAC+TGG | - | chr1.4:48991806-48991825 | MS.gene73545:CDS | 40.0% |
| !!! | TGGTTCACAGGTACCTTTTT+TGG | - | chr1.4:48991790-48991809 | MS.gene73545:CDS | 40.0% |
| AAAGCGAAAGAGCAAGGGAA+GGG | + | chr1.4:48987399-48987418 | None:intergenic | 45.0% | |
| AGTAGCAAAGCGAAAGAGCA+AGG | + | chr1.4:48987405-48987424 | None:intergenic | 45.0% | |
| AGTCAACACTAAACGGCAGT+AGG | - | chr1.4:48987735-48987754 | MS.gene73545:intron | 45.0% | |
| ATTATGTGTTCTGCAGGCGA+TGG | - | chr1.4:48990742-48990761 | MS.gene73545:intron | 45.0% | |
| CATAACAGTGACTTAGACGG+TGG | - | chr1.4:48988887-48988906 | MS.gene73545:CDS | 45.0% | |
| CGAAAATTTGGGCCGTTTCT+TGG | + | chr1.4:48989878-48989897 | None:intergenic | 45.0% | |
| GAGTAGACAATAGACTCCTC+AGG | - | chr1.4:48987880-48987899 | MS.gene73545:intron | 45.0% | |
| GTAGACAATAGACTCCTCAG+GGG | - | chr1.4:48987882-48987901 | MS.gene73545:intron | 45.0% | |
| GTAGCAAAGCGAAAGAGCAA+GGG | + | chr1.4:48987404-48987423 | None:intergenic | 45.0% | |
| TAGACAATAGACTCCTCAGG+GGG | - | chr1.4:48987883-48987902 | MS.gene73545:intron | 45.0% | |
| TGAAAAACATGATCCCCCTG+AGG | + | chr1.4:48987899-48987918 | None:intergenic | 45.0% | |
| TTGCTCTTTCGCTTTGCTAC+TGG | - | chr1.4:48987404-48987423 | MS.gene73545:intron | 45.0% | |
| TTTGGGGAAGTAACAGGGAT+TGG | + | chr1.4:48988790-48988809 | None:intergenic | 45.0% | |
| ! | AATCGTACGCGAAGTACTTG+TGG | - | chr1.4:48991465-48991484 | MS.gene73545:intron | 45.0% |
| ! | ACGCGAAGTACTTGTGGAAT+TGG | - | chr1.4:48991471-48991490 | MS.gene73545:intron | 45.0% |
| ! | AGCAAAGCGTTTAGGTTCAG+GGG | + | chr1.4:48987339-48987358 | None:intergenic | 45.0% |
| ! | CAGCTGTCCATTTTGTCGAA+AGG | - | chr1.4:48989675-48989694 | MS.gene73545:intron | 45.0% |
| ! | GCTACTGGAGTTTTCGTTTC+TGG | - | chr1.4:48987419-48987438 | MS.gene73545:intron | 45.0% |
| ! | GGTTCAGGGGGTTTGAAATT+TGG | + | chr1.4:48987326-48987345 | None:intergenic | 45.0% |
| ! | TAGATCTCAATGGGCTTCTC+TGG | + | chr1.4:48989496-48989515 | None:intergenic | 45.0% |
| ! | TCAGGGGGTTTGAAATTTGG+AGG | + | chr1.4:48987323-48987342 | None:intergenic | 45.0% |
| ! | TCGCGTACGATTTTGCAGAA+AGG | + | chr1.4:48991457-48991476 | None:intergenic | 45.0% |
| !! | ACTTGCGGTTTTGCTATGCT+TGG | - | chr1.4:48990899-48990918 | MS.gene73545:intron | 45.0% |
| !! | GCTTTTTGTTGTGCCTTTGC+AGG | - | chr1.4:48988568-48988587 | MS.gene73545:intron | 45.0% |
| !! | TGTGCTTTGGGGAAGTAACA+GGG | + | chr1.4:48988795-48988814 | None:intergenic | 45.0% |
| !!! | ATGTGGTGTTGGCTTTTGGA+TGG | + | chr1.4:48988481-48988500 | None:intergenic | 45.0% |
| !!! | TGTGGTGTTGGCTTTTGGAT+GGG | + | chr1.4:48988480-48988499 | None:intergenic | 45.0% |
| CAAAGCGAAAGAGCAAGGGA+AGG | + | chr1.4:48987400-48987419 | None:intergenic | 50.0% | |
| CGTGCGAAGGTTGTTGAGAT+GGG | - | chr1.4:48989896-48989915 | MS.gene73545:intron | 50.0% | |
| GCCCACATTGTGTGCCTAAT+AGG | - | chr1.4:48987696-48987715 | MS.gene73545:intron | 50.0% | |
| TCGTGCGAAGGTTGTTGAGA+TGG | - | chr1.4:48989895-48989914 | MS.gene73545:intron | 50.0% | |
| ! | GATGCGTGGTTTGCATGTTG+TGG | + | chr1.4:48991137-48991156 | None:intergenic | 50.0% |
| ! | GCAAAGCGTTTAGGTTCAGG+GGG | + | chr1.4:48987338-48987357 | None:intergenic | 50.0% |
| ! | GGGGGTTTGAAATTTGGAGG+AGG | + | chr1.4:48987320-48987339 | None:intergenic | 50.0% |
| !! | CTGTGCTTTGGGGAAGTAAC+AGG | + | chr1.4:48988796-48988815 | None:intergenic | 50.0% |
| GCGAAGGTTGTTGAGATGGG+TGG | - | chr1.4:48989899-48989918 | MS.gene73545:intron | 55.0% | |
| TTTGGGCCGTTTCTTGGGCA+AGG | + | chr1.4:48989872-48989891 | None:intergenic | 55.0% | |
| ! | CGGCCCAAATTTTCGTGCGA+AGG | - | chr1.4:48989883-48989902 | MS.gene73545:intron | 55.0% |
| GGCTTCGGAGGTAACTTCGC+TGG | + | chr1.4:48991086-48991105 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 48987254 | 48991889 | 48987254 | ID=MS.gene73545 |
| chr1.4 | mRNA | 48987254 | 48991889 | 48987254 | ID=MS.gene73545.t1;Parent=MS.gene73545 |
| chr1.4 | exon | 48991702 | 48991889 | 48991702 | ID=MS.gene73545.t1.exon1;Parent=MS.gene73545.t1 |
| chr1.4 | CDS | 48991702 | 48991889 | 48991702 | ID=cds.MS.gene73545.t1;Parent=MS.gene73545.t1 |
| chr1.4 | exon | 48990489 | 48990553 | 48990489 | ID=MS.gene73545.t1.exon2;Parent=MS.gene73545.t1 |
| chr1.4 | CDS | 48990489 | 48990553 | 48990489 | ID=cds.MS.gene73545.t1;Parent=MS.gene73545.t1 |
| chr1.4 | exon | 48989616 | 48989688 | 48989616 | ID=MS.gene73545.t1.exon3;Parent=MS.gene73545.t1 |
| chr1.4 | CDS | 48989616 | 48989688 | 48989616 | ID=cds.MS.gene73545.t1;Parent=MS.gene73545.t1 |
| chr1.4 | exon | 48989447 | 48989465 | 48989447 | ID=MS.gene73545.t1.exon4;Parent=MS.gene73545.t1 |
| chr1.4 | CDS | 48989447 | 48989465 | 48989447 | ID=cds.MS.gene73545.t1;Parent=MS.gene73545.t1 |
| chr1.4 | exon | 48989200 | 48989319 | 48989200 | ID=MS.gene73545.t1.exon5;Parent=MS.gene73545.t1 |
| chr1.4 | CDS | 48989200 | 48989319 | 48989200 | ID=cds.MS.gene73545.t1;Parent=MS.gene73545.t1 |
| chr1.4 | exon | 48988840 | 48988909 | 48988840 | ID=MS.gene73545.t1.exon6;Parent=MS.gene73545.t1 |
| chr1.4 | CDS | 48988840 | 48988909 | 48988840 | ID=cds.MS.gene73545.t1;Parent=MS.gene73545.t1 |
| chr1.4 | exon | 48988342 | 48988385 | 48988342 | ID=MS.gene73545.t1.exon7;Parent=MS.gene73545.t1 |
| chr1.4 | CDS | 48988342 | 48988385 | 48988342 | ID=cds.MS.gene73545.t1;Parent=MS.gene73545.t1 |
| chr1.4 | exon | 48988209 | 48988250 | 48988209 | ID=MS.gene73545.t1.exon8;Parent=MS.gene73545.t1 |
| chr1.4 | CDS | 48988209 | 48988250 | 48988209 | ID=cds.MS.gene73545.t1;Parent=MS.gene73545.t1 |
| chr1.4 | exon | 48988016 | 48988075 | 48988016 | ID=MS.gene73545.t1.exon9;Parent=MS.gene73545.t1 |
| chr1.4 | CDS | 48988016 | 48988075 | 48988016 | ID=cds.MS.gene73545.t1;Parent=MS.gene73545.t1 |
| chr1.4 | exon | 48987628 | 48987695 | 48987628 | ID=MS.gene73545.t1.exon10;Parent=MS.gene73545.t1 |
| chr1.4 | CDS | 48987628 | 48987695 | 48987628 | ID=cds.MS.gene73545.t1;Parent=MS.gene73545.t1 |
| chr1.4 | exon | 48987449 | 48987506 | 48987449 | ID=MS.gene73545.t1.exon11;Parent=MS.gene73545.t1 |
| chr1.4 | CDS | 48987449 | 48987506 | 48987449 | ID=cds.MS.gene73545.t1;Parent=MS.gene73545.t1 |
| chr1.4 | exon | 48987254 | 48987343 | 48987254 | ID=MS.gene73545.t1.exon12;Parent=MS.gene73545.t1 |
| chr1.4 | CDS | 48987254 | 48987343 | 48987254 | ID=cds.MS.gene73545.t1;Parent=MS.gene73545.t1 |
| Gene Sequence |
| Protein sequence |
