AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062239


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062239.t1 MTR_1g076650 99.333 150 1 0 1 150 1 150 2.32e-105 297
MS.gene062239.t1 MTR_1g041285 85.906 149 21 0 1 149 1 149 6.45e-91 261
MS.gene062239.t1 MTR_5g088320 77.703 148 33 0 1 148 1 148 5.94e-83 240
MS.gene062239.t1 MTR_5g088320 45.070 71 36 1 6 76 82 149 2.62e-11 58.2
MS.gene062239.t1 MTR_6g025320 77.027 148 34 0 1 148 1 148 2.52e-82 239
MS.gene062239.t1 MTR_6g025320 45.070 71 36 1 6 76 82 149 2.88e-11 58.2
MS.gene062239.t1 MTR_7g087610 77.027 148 34 0 1 148 1 148 1.16e-81 237
MS.gene062239.t1 MTR_7g087610 46.479 71 35 1 6 76 82 149 4.49e-12 60.5
MS.gene062239.t1 MTR_0168s0120 78.571 112 24 0 37 148 1 112 4.13e-62 186
MS.gene062239.t1 MTR_0168s0120 45.070 71 36 1 6 76 46 113 8.35e-12 58.9
MS.gene062239.t1 MTR_6g025320 78.571 112 24 0 37 148 1 112 4.13e-62 186
MS.gene062239.t1 MTR_6g025320 45.070 71 36 1 6 76 46 113 8.35e-12 58.9
MS.gene062239.t1 MTR_7g115040 67.785 149 48 0 1 149 1 149 1.36e-61 186
MS.gene062239.t1 MTR_1g071150 57.823 147 61 1 1 147 1 146 7.81e-58 177
MS.gene062239.t1 MTR_8g066630 44.898 147 78 1 5 148 10 156 1.61e-40 134
MS.gene062239.t1 MTR_7g074020 43.151 146 83 0 3 148 21 166 2.47e-38 128
MS.gene062239.t1 MTR_1g032070 49.265 136 69 0 12 147 46 181 4.54e-38 128
MS.gene062239.t1 MTR_1g032070 41.935 62 36 0 84 145 45 106 3.82e-11 58.9
MS.gene062239.t1 MTR_5g011850 40.541 148 86 1 1 148 1 146 6.66e-38 126
MS.gene062239.t1 MTR_6g007613 41.667 144 84 0 3 146 20 163 5.89e-36 122
MS.gene062239.t1 MTR_6g007613 43.836 73 41 0 74 146 18 90 1.27e-12 62.4
MS.gene062239.t1 MTR_4g112460 43.056 144 74 2 8 146 7 147 7.76e-36 122
MS.gene062239.t1 MTR_4g112460 37.778 90 53 1 4 93 81 167 2.72e-12 61.2
MS.gene062239.t1 MTR_7g074020 42.308 130 75 0 3 132 21 150 3.80e-33 115
MS.gene062239.t1 MTR_7g074020 47.619 63 33 0 84 146 29 91 1.36e-12 62.0
MS.gene062239.t1 MTR_3g055570 44.444 144 65 1 1 144 41 169 2.42e-32 113
MS.gene062239.t1 MTR_8g105230 45.802 131 71 0 12 142 36 166 2.53e-32 113
MS.gene062239.t1 MTR_8g105230 51.562 64 31 0 6 69 103 166 4.86e-14 66.2
MS.gene062239.t1 MTR_8g107110 47.015 134 70 1 13 146 25 157 2.90e-32 112
MS.gene062239.t1 MTR_8g069915 39.189 148 88 1 1 146 1 148 2.09e-31 110
MS.gene062239.t1 MTR_8g069915 36.842 76 45 1 4 79 82 154 2.41e-11 58.9
MS.gene062239.t1 MTR_6g007613 40.769 130 77 0 3 132 20 149 3.41e-31 109
MS.gene062239.t1 MTR_6g007613 43.836 73 41 0 74 146 18 90 8.20e-13 62.4
MS.gene062239.t1 MTR_5g079340 43.609 133 74 1 14 146 6 137 2.31e-30 107
MS.gene062239.t1 MTR_6g079570 45.185 135 72 2 13 146 27 160 1.19e-29 106
MS.gene062239.t1 MTR_6g079570 45.455 66 36 0 13 78 100 165 1.11e-12 62.4
MS.gene062239.t1 MTR_1g046950 42.222 135 76 1 14 146 6 140 2.28e-29 104
MS.gene062239.t1 MTR_1g046950 44.444 63 35 0 13 75 80 142 3.22e-11 57.8
MS.gene062239.t1 MTR_3g055520 42.759 145 68 1 1 145 41 170 2.70e-29 105
MS.gene062239.t1 MTR_4g067270 41.606 137 78 1 12 146 5 141 3.69e-29 104
MS.gene062239.t1 MTR_7g090450 43.972 141 74 3 11 146 72 212 1.38e-28 104
MS.gene062239.t1 MTR_1g047100 40.441 136 80 1 14 148 6 141 1.01e-27 100
MS.gene062239.t1 MTR_3g067610 45.113 133 69 2 14 146 7 135 1.47e-27 100
MS.gene062239.t1 MTR_3g067610 46.667 60 32 0 83 142 3 62 1.89e-11 58.5
MS.gene062239.t1 MTR_3g055585 42.069 145 69 1 1 145 41 170 2.66e-27 100
MS.gene062239.t1 MTR_7g106710 41.096 146 83 2 1 146 429 571 1.44e-26 104
MS.gene062239.t1 MTR_8g036075 42.254 142 74 3 13 146 50 191 2.35e-26 98.6
MS.gene062239.t1 MTR_4g115170 39.869 153 74 2 12 146 64 216 3.83e-26 99.0
MS.gene062239.t1 MTR_4g115170 49.275 69 33 1 7 73 148 216 2.97e-11 59.3
MS.gene062239.t1 MTR_1g096490 41.892 148 79 3 1 146 324 466 1.96e-25 100
MS.gene062239.t1 MTR_1g055255 38.356 146 87 2 1 146 418 560 3.06e-25 100
MS.gene062239.t1 MTR_7g075040 39.860 143 77 3 13 146 48 190 4.77e-25 95.1
MS.gene062239.t1 MTR_7g068710 37.838 148 91 1 1 148 350 496 8.75e-25 99.0
MS.gene062239.t1 MTR_0028s0170 37.838 148 86 3 1 146 372 515 1.22e-24 98.6
MS.gene062239.t1 MTR_0028s0170 38.095 84 49 1 67 147 362 445 6.00e-11 59.7
MS.gene062239.t1 MTR_5g089320 37.162 148 87 3 1 146 362 505 2.58e-24 97.8
MS.gene062239.t1 MTR_7g089760 43.939 132 72 1 17 146 10 141 2.78e-24 92.0
MS.gene062239.t1 MTR_8g095440 38.356 146 87 2 1 146 324 466 3.27e-24 97.4
MS.gene062239.t1 MTR_3g098070 37.671 146 88 2 1 146 323 465 3.92e-24 97.1
MS.gene062239.t1 MTR_8g099095 37.162 148 87 3 1 146 360 503 5.46e-24 97.1
MS.gene062239.t1 MTR_4g107490 37.584 149 90 3 1 148 367 513 7.65e-24 96.7
MS.gene062239.t1 MTR_5g009830 36.486 148 88 3 1 146 360 503 1.96e-23 95.1
MS.gene062239.t1 MTR_1g041150 36.986 146 89 2 1 146 412 554 3.64e-23 94.7
MS.gene062239.t1 MTR_3g098090 36.301 146 90 2 1 146 326 468 4.52e-23 94.4
MS.gene062239.t1 MTR_3g055490 54.930 71 32 0 5 75 45 115 5.80e-23 87.8
MS.gene062239.t1 MTR_3g089090 35.252 139 79 2 13 146 6 138 1.15e-22 87.4
MS.gene062239.t1 MTR_3g089070 35.252 139 79 2 13 146 7 139 1.15e-22 87.4
MS.gene062239.t1 MTR_5g099240 36.301 146 90 2 1 146 318 460 1.33e-22 92.8
MS.gene062239.t1 MTR_4g132070 35.570 149 92 3 1 148 385 530 1.35e-22 92.8
MS.gene062239.t1 MTR_5g099240 36.301 146 90 2 1 146 390 532 1.43e-22 92.8
MS.gene062239.t1 MTR_5g092810 36.242 149 91 3 1 148 386 531 1.65e-22 92.8
MS.gene062239.t1 MTR_5g017550 37.681 138 79 2 14 148 50 183 4.93e-22 87.4
MS.gene062239.t1 MTR_1g054865 36.301 146 90 2 1 146 455 597 5.61e-22 91.3
MS.gene062239.t1 MTR_4g086260 36.842 133 82 1 14 146 59 189 1.07e-21 86.7
MS.gene062239.t1 MTR_1g026190 35.811 148 89 3 1 146 376 519 1.29e-21 90.1
MS.gene062239.t1 MTR_6g023460 32.857 140 93 1 8 147 4 142 2.43e-21 84.3
MS.gene062239.t1 MTR_6g023460 40.299 67 40 0 7 73 75 141 9.29e-12 59.3
MS.gene062239.t1 MTR_5g027000 34.328 134 88 0 9 142 19 152 3.30e-21 84.3
MS.gene062239.t1 MTR_4g103630 35.714 140 81 2 11 146 5 139 4.61e-21 83.6
MS.gene062239.t1 MTR_5g017510 36.691 139 80 3 14 148 50 184 4.65e-21 84.7
MS.gene062239.t1 MTR_5g017560 36.691 139 80 3 14 148 50 184 4.65e-21 84.7
MS.gene062239.t1 MTR_7g074240 37.162 148 81 2 13 148 25 172 1.21e-20 83.6
MS.gene062239.t1 MTR_3g051770 35.256 156 90 3 1 148 377 529 1.48e-20 87.0
MS.gene062239.t1 MTR_4g103650 35.000 140 82 2 11 146 1 135 1.80e-20 81.6
MS.gene062239.t1 MTR_4g132040 32.886 149 95 4 1 148 390 534 6.74e-20 85.1
MS.gene062239.t1 MTR_4g066660 34.722 144 92 2 5 148 370 511 1.62e-19 84.3
MS.gene062239.t1 MTR_2g098890 38.849 139 81 2 12 146 64 202 3.16e-19 80.5
MS.gene062239.t1 MTR_7g106710 38.636 132 78 2 1 132 429 557 4.54e-19 82.8
MS.gene062239.t1 MTR_4g103655 33.571 140 84 2 11 146 5 139 5.13e-19 78.2
MS.gene062239.t1 MTR_8g078270 34.815 135 86 2 13 146 54 187 5.26e-19 79.3
MS.gene062239.t1 MTR_8g078270 50.000 64 32 0 83 146 51 114 1.85e-13 64.7
MS.gene062239.t1 MTR_7g091890 32.432 148 95 2 1 146 352 496 1.18e-17 79.0
MS.gene062239.t1 MTR_3g055480 57.407 54 23 0 93 146 53 106 1.69e-17 73.6
MS.gene062239.t1 MTR_3g055480 41.333 75 37 1 1 75 41 108 7.61e-12 58.9
MS.gene062239.t1 MTR_5g008705 31.250 128 88 0 19 146 1 128 6.72e-17 72.4
MS.gene062239.t1 MTR_3g055510 49.180 61 31 0 84 144 71 131 5.52e-16 70.5
MS.gene062239.t1 MTR_1g052530 28.767 146 103 1 1 146 346 490 1.62e-15 72.8
MS.gene062239.t1 MTR_3g083470 31.298 131 80 1 17 147 98 218 2.81e-15 70.5
MS.gene062239.t1 MTR_3g083470 45.588 68 37 0 6 73 150 217 7.90e-13 63.9
MS.gene062239.t1 MTR_5g022030 27.922 154 99 5 1 148 395 542 1.69e-14 69.7
MS.gene062239.t1 MTR_4g122260 27.027 148 104 2 3 146 7 154 3.82e-14 66.2
MS.gene062239.t1 MTR_5g008695 34.513 113 70 3 36 145 1 112 7.64e-14 64.3
MS.gene062239.t1 MTR_5g089440 33.333 129 74 4 23 146 55 176 7.25e-13 63.2
MS.gene062239.t1 MTR_3g088655 28.947 152 90 3 11 147 7 155 1.46e-12 62.0
MS.gene062239.t1 MTR_8g099575 33.594 128 72 3 25 142 49 173 8.72e-12 60.8
MS.gene062239.t1 MTR_1g030440 32.624 141 79 4 17 147 27 161 6.26e-11 57.8
MS.gene062239.t1 MTR_2g104130 26.846 149 95 5 3 146 22 161 6.96e-11 57.8
MS.gene062239.t1 MTR_4g082050 40.541 74 44 0 73 146 65 138 7.13e-11 57.0
MS.gene062239.t1 MTR_5g025690 47.692 65 32 1 84 146 131 195 9.48e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062239.t1 AT3G22930 81.818 143 26 0 5 147 28 170 2.21e-85 248
MS.gene062239.t1 AT4G14640 80.137 146 29 0 4 149 5 150 4.10e-85 246
MS.gene062239.t1 AT2G27030 77.333 150 34 0 1 150 1 150 1.90e-83 243
MS.gene062239.t1 AT2G27030 38.298 94 55 1 6 99 82 172 1.06e-11 60.1
MS.gene062239.t1 AT5G37780 77.703 148 33 0 1 148 1 148 5.39e-83 241
MS.gene062239.t1 AT5G37780 45.070 71 36 1 6 76 82 149 9.52e-12 59.7
MS.gene062239.t1 AT1G66410 77.703 148 33 0 1 148 1 148 5.39e-83 241
MS.gene062239.t1 AT1G66410 45.070 71 36 1 6 76 82 149 9.52e-12 59.7
MS.gene062239.t1 AT5G21274 77.703 148 33 0 1 148 1 148 9.75e-83 240
MS.gene062239.t1 AT5G21274 43.662 71 37 1 6 76 82 149 9.17e-11 57.0
MS.gene062239.t1 AT3G56800 77.703 148 33 0 1 148 1 148 1.14e-82 240
MS.gene062239.t1 AT3G56800 45.070 71 36 1 6 76 82 149 2.72e-11 58.2
MS.gene062239.t1 AT2G27030 77.703 148 33 0 1 148 1 148 1.14e-82 240
MS.gene062239.t1 AT2G27030 45.070 71 36 1 6 76 82 149 2.72e-11 58.2
MS.gene062239.t1 AT2G41110 77.703 148 33 0 1 148 1 148 1.14e-82 240
MS.gene062239.t1 AT2G41110 45.070 71 36 1 6 76 82 149 2.72e-11 58.2
MS.gene062239.t1 AT3G43810 77.027 148 34 0 1 148 1 148 2.64e-82 239
MS.gene062239.t1 AT3G43810 45.070 71 36 1 6 76 82 149 3.02e-11 58.2
MS.gene062239.t1 AT3G43810 77.027 148 34 0 1 148 1 148 7.82e-82 240
MS.gene062239.t1 AT2G41110 71.875 160 33 1 1 148 1 160 4.75e-79 231
MS.gene062239.t1 AT2G41110 45.070 71 36 1 6 76 94 161 3.27e-11 58.5
MS.gene062239.t1 AT5G37780 70.552 163 33 1 1 148 1 163 1.16e-78 230
MS.gene062239.t1 AT5G37780 45.070 71 36 1 6 76 97 164 1.37e-11 59.3
MS.gene062239.t1 AT5G37780 66.092 174 33 1 1 148 1 174 6.48e-77 226
MS.gene062239.t1 AT5G37780 45.070 71 36 1 6 76 108 175 1.80e-11 59.3
MS.gene062239.t1 AT1G66410 72.785 158 33 1 1 148 1 158 1.12e-74 220
MS.gene062239.t1 AT1G66410 45.070 71 36 1 6 76 92 159 1.23e-11 59.3
MS.gene062239.t1 AT4G14640 82.258 124 22 0 26 149 9 132 2.33e-73 216
MS.gene062239.t1 AT4G14640 45.161 62 34 0 12 73 68 129 4.49e-12 60.1
MS.gene062239.t1 AT5G37780 78.049 123 27 0 26 148 13 135 5.84e-69 204
MS.gene062239.t1 AT5G37780 45.070 71 36 1 6 76 69 136 7.84e-12 59.3
MS.gene062239.t1 AT1G66410 78.571 112 24 0 37 148 1 112 3.15e-62 187
MS.gene062239.t1 AT1G66410 45.070 71 36 1 6 76 46 113 2.66e-12 60.1
MS.gene062239.t1 AT1G66410 78.571 112 24 0 37 148 1 112 3.15e-62 187
MS.gene062239.t1 AT1G66410 45.070 71 36 1 6 76 46 113 2.66e-12 60.1
MS.gene062239.t1 AT3G43810 78.571 112 24 0 37 148 1 112 4.32e-62 186
MS.gene062239.t1 AT3G43810 45.070 71 36 1 6 76 46 113 8.75e-12 58.9
MS.gene062239.t1 AT3G43810 78.571 112 24 0 37 148 1 112 4.32e-62 186
MS.gene062239.t1 AT3G43810 45.070 71 36 1 6 76 46 113 8.75e-12 58.9
MS.gene062239.t1 AT4G14640 78.846 104 22 0 4 107 5 108 8.78e-58 176
MS.gene062239.t1 AT3G22930 78.846 104 22 0 5 108 28 131 1.98e-57 175
MS.gene062239.t1 AT3G22930 43.548 62 35 0 85 146 35 96 5.31e-11 57.0
MS.gene062239.t1 AT2G41090 49.660 147 71 1 1 147 1 144 1.61e-45 147
MS.gene062239.t1 AT3G51920 50.000 148 74 0 1 148 1 148 3.86e-44 142
MS.gene062239.t1 AT2G41100 47.853 163 68 1 1 146 55 217 1.19e-43 145
MS.gene062239.t1 AT2G41100 40.945 127 59 2 36 146 1 127 6.38e-26 99.8
MS.gene062239.t1 AT2G41100 50.526 95 44 1 3 97 147 238 6.73e-25 97.1
MS.gene062239.t1 AT2G41100 47.853 163 68 1 1 146 55 217 1.19e-43 145
MS.gene062239.t1 AT2G41100 40.945 127 59 2 36 146 1 127 6.38e-26 99.8
MS.gene062239.t1 AT2G41100 50.526 95 44 1 3 97 147 238 6.73e-25 97.1
MS.gene062239.t1 AT2G41100 47.853 163 68 1 1 146 55 217 1.19e-43 145
MS.gene062239.t1 AT2G41100 40.945 127 59 2 36 146 1 127 6.38e-26 99.8
MS.gene062239.t1 AT2G41100 50.526 95 44 1 3 97 147 238 6.73e-25 97.1
MS.gene062239.t1 AT2G41100 47.853 163 68 1 1 146 90 252 2.66e-43 145
MS.gene062239.t1 AT2G41100 43.827 162 75 2 1 146 1 162 4.10e-41 140
MS.gene062239.t1 AT2G41100 50.526 95 44 1 3 97 182 273 1.21e-24 97.1
MS.gene062239.t1 AT2G41100 47.853 163 68 1 1 146 90 252 2.66e-43 145
MS.gene062239.t1 AT2G41100 43.827 162 75 2 1 146 1 162 4.10e-41 140
MS.gene062239.t1 AT2G41100 50.526 95 44 1 3 97 182 273 1.21e-24 97.1
MS.gene062239.t1 AT3G50360 43.750 144 81 0 3 146 18 161 1.22e-38 129
MS.gene062239.t1 AT1G66400 48.551 138 69 1 12 147 15 152 3.97e-37 125
MS.gene062239.t1 AT1G66400 42.188 64 37 0 10 73 88 151 5.14e-11 57.8
MS.gene062239.t1 AT1G62820 40.278 144 84 1 5 148 6 147 5.69e-37 124
MS.gene062239.t1 AT1G12310 39.583 144 85 1 5 148 6 147 1.93e-36 123
MS.gene062239.t1 AT1G32250 39.744 156 84 2 1 146 1 156 4.84e-35 120
MS.gene062239.t1 AT5G37770 47.482 139 69 1 12 146 17 155 5.57e-35 119
MS.gene062239.t1 AT5G37770 43.077 65 37 0 10 74 92 156 8.53e-13 62.4
MS.gene062239.t1 AT5G37770 47.482 139 69 1 12 146 17 155 5.57e-35 119
MS.gene062239.t1 AT5G37770 43.077 65 37 0 10 74 92 156 8.53e-13 62.4
MS.gene062239.t1 AT1G18530 42.069 145 76 2 7 146 2 143 2.49e-34 117
MS.gene062239.t1 AT1G18530 39.474 76 43 1 4 79 77 149 3.57e-11 58.2
MS.gene062239.t1 AT4G37010 38.621 145 89 0 2 146 21 165 4.45e-32 112
MS.gene062239.t1 AT4G37010 45.312 64 35 0 85 148 31 94 2.52e-11 58.9
MS.gene062239.t1 AT3G03000 42.069 145 83 1 5 148 13 157 5.23e-32 112
MS.gene062239.t1 AT4G37010 38.621 145 89 0 2 146 17 161 5.46e-32 112
MS.gene062239.t1 AT4G37010 45.312 64 35 0 85 148 27 90 2.49e-11 58.9
MS.gene062239.t1 AT1G24620 43.972 141 78 1 9 149 34 173 6.80e-32 112
MS.gene062239.t1 AT1G18210 43.704 135 72 1 12 146 23 153 1.08e-30 108
MS.gene062239.t1 AT1G18210 43.704 135 72 1 12 146 23 153 1.08e-30 108
MS.gene062239.t1 AT3G25600 38.411 151 85 2 1 146 1 148 2.65e-30 107
MS.gene062239.t1 AT3G25600 38.158 76 44 1 4 79 82 154 1.35e-11 59.3
MS.gene062239.t1 AT2G41100 48.800 125 47 2 39 146 3 127 5.08e-29 105
MS.gene062239.t1 AT2G41100 50.526 95 44 1 3 97 57 148 7.62e-26 97.4
MS.gene062239.t1 AT1G73630 41.912 136 75 1 11 146 19 150 6.32e-29 104
MS.gene062239.t1 AT1G05990 40.288 139 80 2 11 146 4 142 2.53e-27 99.8
MS.gene062239.t1 AT2G41100 50.515 97 45 1 1 97 1 94 5.32e-27 99.0
MS.gene062239.t1 AT2G41100 50.000 74 36 1 73 146 1 73 8.71e-17 72.8
MS.gene062239.t1 AT3G59440 40.426 141 81 2 8 146 47 186 3.96e-26 98.2
MS.gene062239.t1 AT3G59440 44.595 74 39 1 2 73 113 186 2.82e-12 62.0
MS.gene062239.t1 AT2G43290 39.716 141 78 3 13 146 66 206 1.26e-25 97.4
MS.gene062239.t1 AT2G43290 51.562 64 29 1 12 73 143 206 9.43e-13 63.5
MS.gene062239.t1 AT3G10190 38.514 148 88 3 1 146 59 205 1.79e-25 96.7
MS.gene062239.t1 AT5G12180 39.726 146 86 2 1 146 367 510 1.92e-25 100
MS.gene062239.t1 AT2G15680 36.806 144 89 1 5 148 43 184 2.01e-25 95.9
MS.gene062239.t1 AT4G38230 39.041 146 86 2 1 146 174 316 2.37e-25 99.0
MS.gene062239.t1 AT5G19360 39.041 146 87 2 1 146 362 505 5.18e-25 99.8
MS.gene062239.t1 AT5G23580 39.726 146 85 2 1 146 316 458 6.13e-25 99.4
MS.gene062239.t1 AT4G38230 39.041 146 86 2 1 146 318 460 7.43e-25 99.4
MS.gene062239.t1 AT4G38230 39.041 146 86 2 1 146 318 460 7.43e-25 99.4
MS.gene062239.t1 AT1G35670 39.726 146 85 2 1 146 320 462 7.78e-25 99.4
MS.gene062239.t1 AT4G38230 39.041 146 86 2 1 146 348 490 7.93e-25 99.4
MS.gene062239.t1 AT4G09570 40.541 148 81 3 1 146 319 461 1.69e-24 98.2
MS.gene062239.t1 AT3G50770 36.667 150 87 3 2 146 57 203 3.64e-24 93.2
MS.gene062239.t1 AT1G76040 36.986 146 90 2 1 146 167 310 5.91e-24 95.1
MS.gene062239.t1 AT1G76040 36.986 146 90 2 1 146 167 310 5.91e-24 95.1
MS.gene062239.t1 AT4G04700 39.189 148 88 2 1 148 325 470 9.07e-24 96.3
MS.gene062239.t1 AT4G04695 37.333 150 88 3 1 148 325 470 1.07e-23 95.9
MS.gene062239.t1 AT4G04720 38.667 150 86 3 1 148 373 518 1.08e-23 96.3
MS.gene062239.t1 AT4G04720 38.667 150 86 3 1 148 373 518 1.08e-23 96.3
MS.gene062239.t1 AT4G03290 39.007 141 81 2 11 146 4 144 1.19e-23 90.5
MS.gene062239.t1 AT4G03290 48.438 64 31 1 14 75 83 146 5.12e-12 60.5
MS.gene062239.t1 AT2G41410 40.146 137 79 3 15 148 73 209 1.29e-23 92.0
MS.gene062239.t1 AT5G04870 36.301 146 90 2 1 146 444 586 1.51e-23 95.9
MS.gene062239.t1 AT3G10660 35.616 146 91 2 1 146 480 622 1.88e-23 95.5
MS.gene062239.t1 AT3G10660 35.616 146 91 2 1 146 480 622 1.88e-23 95.5
MS.gene062239.t1 AT4G23650 36.486 148 88 3 1 146 372 515 2.13e-23 95.1
MS.gene062239.t1 AT4G23650 41.463 82 44 1 70 147 364 445 1.14e-11 61.6
MS.gene062239.t1 AT1G76040 36.986 146 90 2 1 146 405 548 2.43e-23 95.1
MS.gene062239.t1 AT2G17290 36.986 146 89 2 1 146 379 521 3.98e-23 94.7
MS.gene062239.t1 AT2G17290 36.986 146 89 2 1 146 379 521 3.98e-23 94.7
MS.gene062239.t1 AT4G12860 39.552 134 79 1 15 146 8 141 4.32e-23 89.0
MS.gene062239.t1 AT4G21940 37.333 150 88 3 1 148 395 540 1.60e-22 92.8
MS.gene062239.t1 AT4G21940 37.333 150 88 3 1 148 395 540 1.77e-22 92.8
MS.gene062239.t1 AT4G35310 35.616 146 91 2 1 146 391 533 1.96e-22 92.4
MS.gene062239.t1 AT4G35310 35.616 146 91 2 1 146 391 533 1.96e-22 92.4
MS.gene062239.t1 AT4G04740 38.194 144 83 3 5 146 366 505 4.18e-22 91.7
MS.gene062239.t1 AT4G04740 38.194 144 83 3 5 146 366 505 4.18e-22 91.7
MS.gene062239.t1 AT4G04740 38.194 144 83 3 5 146 366 505 4.18e-22 91.7
MS.gene062239.t1 AT4G04740 38.194 144 83 3 5 146 366 505 4.18e-22 91.7
MS.gene062239.t1 AT4G04740 38.194 144 83 3 5 146 366 505 4.18e-22 91.7
MS.gene062239.t1 AT4G04740 38.194 144 83 3 5 146 366 505 4.18e-22 91.7
MS.gene062239.t1 AT5G17470 38.060 134 81 1 15 146 5 138 6.59e-22 85.9
MS.gene062239.t1 AT3G07490 40.909 132 76 1 17 146 10 141 6.82e-22 85.9
MS.gene062239.t1 AT1G61950 34.667 150 92 3 1 148 393 538 2.57e-21 89.4
MS.gene062239.t1 AT4G20780 38.312 154 73 3 17 149 34 186 2.60e-21 85.5
MS.gene062239.t1 AT2G38910 34.932 146 92 2 1 146 428 570 3.20e-21 89.4
MS.gene062239.t1 AT3G51850 35.135 148 95 1 1 148 348 494 3.22e-21 89.0
MS.gene062239.t1 AT3G03400 36.800 125 77 1 17 139 10 134 8.28e-21 82.8
MS.gene062239.t1 AT2G36180 40.741 135 77 1 15 146 3 137 1.04e-20 82.8
MS.gene062239.t1 AT1G74740 34.014 147 94 3 1 146 353 497 4.73e-20 85.9
MS.gene062239.t1 AT3G03410 34.328 134 79 1 14 147 4 128 6.61e-20 80.1
MS.gene062239.t1 AT5G12480 34.694 147 94 2 1 146 259 404 1.46e-19 84.3
MS.gene062239.t1 AT5G12480 34.694 147 94 2 1 146 353 498 1.75e-19 84.3
MS.gene062239.t1 AT5G44460 39.726 146 74 4 17 149 33 177 2.23e-19 80.1
MS.gene062239.t1 AT1G50700 31.757 148 99 2 1 148 367 512 4.92e-19 82.8
MS.gene062239.t1 AT5G42380 33.333 138 91 1 10 146 47 184 6.34e-19 79.3
MS.gene062239.t1 AT3G20410 31.757 148 99 2 1 148 385 530 8.68e-19 82.0
MS.gene062239.t1 AT3G20410 31.757 148 99 2 1 148 385 530 8.68e-19 82.0
MS.gene062239.t1 AT3G57530 34.437 151 91 4 1 148 357 502 3.70e-18 80.5
MS.gene062239.t1 AT4G04710 34.694 147 92 3 1 146 326 469 5.26e-18 79.7
MS.gene062239.t1 AT4G04710 34.694 147 92 3 1 146 312 455 5.42e-18 79.7
MS.gene062239.t1 AT4G04710 34.694 147 92 3 1 146 339 482 5.83e-18 79.7
MS.gene062239.t1 AT2G31500 32.653 147 95 3 5 148 364 509 1.14e-17 79.0
MS.gene062239.t1 AT5G19450 33.333 147 96 2 1 146 351 496 2.66e-17 77.8
MS.gene062239.t1 AT5G19450 33.333 147 96 2 1 146 351 496 2.66e-17 77.8
MS.gene062239.t1 AT1G18890 34.014 147 94 3 1 146 357 501 2.73e-17 77.8
MS.gene062239.t1 AT2G41860 32.667 150 96 2 1 148 348 494 7.47e-17 76.6
MS.gene062239.t1 AT2G41860 32.667 150 96 2 1 148 348 494 7.84e-17 76.6
MS.gene062239.t1 AT4G04710 34.899 149 91 4 1 146 339 484 9.16e-17 76.3
MS.gene062239.t1 AT3G51850 38.679 106 64 1 1 106 348 452 2.38e-16 75.1
MS.gene062239.t1 AT2G17890 29.221 154 97 5 1 148 404 551 2.88e-16 75.1
MS.gene062239.t1 AT4G04740 36.923 130 76 3 5 132 366 491 3.04e-16 74.7
MS.gene062239.t1 AT1G76640 31.944 144 92 2 7 146 17 158 8.33e-16 70.5
MS.gene062239.t1 AT5G66210 28.571 154 98 5 1 148 358 505 1.35e-15 73.2
MS.gene062239.t1 AT5G66210 28.571 154 98 5 1 148 358 505 1.35e-15 73.2
MS.gene062239.t1 AT1G21550 32.237 152 83 4 12 149 10 155 8.98e-15 67.8
MS.gene062239.t1 AT1G50700 27.586 174 98 3 1 148 367 538 1.41e-14 70.1
MS.gene062239.t1 AT1G76650 33.083 133 82 2 17 146 48 176 1.71e-13 64.7
MS.gene062239.t1 AT1G76650 33.083 133 82 2 17 146 48 176 1.71e-13 64.7
MS.gene062239.t1 AT4G21940 38.384 99 60 1 1 99 395 492 1.82e-13 67.0
MS.gene062239.t1 AT1G76040 37.624 101 62 1 1 101 405 504 2.03e-13 66.6
MS.gene062239.t1 AT5G49480 29.412 153 100 3 1 146 7 158 2.13e-13 63.9
MS.gene062239.t1 AT5G66210 27.481 131 89 3 1 125 358 488 1.44e-11 61.6
MS.gene062239.t1 AT3G01830 30.612 147 78 6 12 146 11 145 1.88e-11 58.5
MS.gene062239.t1 AT4G36070 26.623 154 101 5 1 148 367 514 2.12e-11 60.8
MS.gene062239.t1 AT4G36070 26.623 154 101 5 1 148 367 514 2.24e-11 60.8
MS.gene062239.t1 AT5G66210 29.565 115 75 3 1 109 358 472 5.95e-11 59.7
MS.gene062239.t1 AT5G07320 24.183 153 104 2 1 147 20 166 9.66e-11 58.9

Find 25 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATGAGTTCTTGAACTTGA+TGG 0.326901 1.1:+57495450 MS.gene062239:CDS
AAGAATTAGCCACTGTTATT+AGG 0.340475 1.1:+57495344 MS.gene062239:CDS
TTTAGTTTGTTTGACAAAGA+TGG 0.393112 1.1:+57495184 MS.gene062239:CDS
GATGATTAAAGAAGCAGATA+TGG 0.394958 1.1:+57496219 MS.gene062239:CDS
GGAACTTAGAGAGGCTTTCA+AGG 0.414658 1.1:+57495664 MS.gene062239:CDS
GTCTTTGACAAAGATCAAAA+TGG 0.424272 1.1:+57495686 MS.gene062239:CDS
CAAGAACTCATCAAATTCAA+TGG 0.434228 1.1:-57495440 None:intergenic
CAACAATTTGTTCTTCACTT+AGG 0.450325 1.1:-57495147 None:intergenic
TCTTGTAGCTCTTCTTCAGT+GGG 0.469600 1.1:-57495382 None:intergenic
ATCTTTGTCAAACAAACTAA+AGG 0.476947 1.1:-57495182 None:intergenic
AGTTCTTGAACTTGATGGCT+AGG 0.482060 1.1:+57495455 MS.gene062239:CDS
ATCTTGTAGCTCTTCTTCAG+TGG 0.512984 1.1:-57495383 None:intergenic
AGACACGTGATGATCAATCT+AGG 0.540494 1.1:+57496166 MS.gene062239:CDS
TTCACTTAGGACATGTGCCA+TGG 0.556059 1.1:-57495134 None:intergenic
CATTTAGGACACTGATGCAG+AGG 0.570696 1.1:+57495640 MS.gene062239:intron
GAAGTTGATGCAGATGGCAA+TGG 0.578787 1.1:+57495415 MS.gene062239:CDS
TTGTTTGACAAAGATGGAGA+TGG 0.596377 1.1:+57495190 MS.gene062239:CDS
ATTAAAGAAGCAGATATGGA+TGG 0.602493 1.1:+57496223 MS.gene062239:CDS
GAAGCAGATATGGATGGTGA+TGG 0.608277 1.1:+57496229 MS.gene062239:CDS
TGCAGAGGAGGAACTTAGAG+AGG 0.631880 1.1:+57495655 MS.gene062239:CDS
TTAGGACACTGATGCAGAGG+AGG 0.636909 1.1:+57495643 MS.gene062239:intron
ATAAGTGAAGTTGATGCAGA+TGG 0.649786 1.1:+57495409 MS.gene062239:CDS
ATCTAATGACCTAATAACAG+TGG 0.661102 1.1:-57495353 None:intergenic
GTTAACAGGTTGCATTACTG+TGG 0.666333 1.1:+57495321 MS.gene062239:intron
TGGCTATATATCAGCCAGTG+AGG 0.688712 1.1:+57495706 MS.gene062239:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAAATAATGAATAGAA+TGG - chr1.1:57495513-57495532 None:intergenic 10.0%
!!! CTGTTATTTTATTTTCATTT+AGG + chr1.1:57495625-57495644 MS.gene062239:intron 15.0%
!! AGAAAAAATAACTCTCTATA+TGG - chr1.1:57495790-57495809 None:intergenic 20.0%
!! GAAAAAATAACTCTCTATAT+GGG - chr1.1:57495789-57495808 None:intergenic 20.0%
!! TAAATAATGAATAGAATGGA+AGG - chr1.1:57495509-57495528 None:intergenic 20.0%
! ACAAGATATATAAGTAGAGA+AGG - chr1.1:57496049-57496068 None:intergenic 25.0%
! ATATCTTGTATTGTACATGA+AGG + chr1.1:57496060-57496079 MS.gene062239:intron 25.0%
! ATCTTTGTCAAACAAACTAA+AGG - chr1.1:57495185-57495204 None:intergenic 25.0%
! CATTCAATATCAAAGTTCTA+AGG + chr1.1:57495542-57495561 MS.gene062239:intron 25.0%
! TAATAACCAAAGACTAAGTT+TGG + chr1.1:57495600-57495619 MS.gene062239:intron 25.0%
! TGAAAAACTTAGTAATGAAG+AGG + chr1.1:57496189-57496208 MS.gene062239:CDS 25.0%
!! AACAATTTTATATACCTCAC+TGG - chr1.1:57495723-57495742 None:intergenic 25.0%
!! TACCACTAAATTTTTACCAT+CGG - chr1.1:57496116-57496135 None:intergenic 25.0%
!!! TTTAGTTTGTTTGACAAAGA+TGG + chr1.1:57495184-57495203 MS.gene062239:CDS 25.0%
AAGAATTAGCCACTGTTATT+AGG + chr1.1:57495344-57495363 MS.gene062239:CDS 30.0%
ATCATGTTGAATGTGTTAAC+AGG + chr1.1:57495307-57495326 MS.gene062239:intron 30.0%
ATCTAATGACCTAATAACAG+TGG - chr1.1:57495356-57495375 None:intergenic 30.0%
ATTAAAGAAGCAGATATGGA+TGG + chr1.1:57496223-57496242 MS.gene062239:CDS 30.0%
CAAGAACTCATCAAATTCAA+TGG - chr1.1:57495443-57495462 None:intergenic 30.0%
GATGAGAATTCTGTGAAAAA+AGG - chr1.1:57495230-57495249 None:intergenic 30.0%
GATGATTAAAGAAGCAGATA+TGG + chr1.1:57496219-57496238 MS.gene062239:CDS 30.0%
GTCTTTGACAAAGATCAAAA+TGG + chr1.1:57495686-57495705 MS.gene062239:CDS 30.0%
TTATATGCACATGCATATCT+AGG + chr1.1:57495900-57495919 MS.gene062239:intron 30.0%
TTCCGATGGTAAAAATTTAG+TGG + chr1.1:57496111-57496130 MS.gene062239:intron 30.0%
TTCTATAGTGAAATTTCCGA+TGG + chr1.1:57496097-57496116 MS.gene062239:intron 30.0%
! CAACAATTTGTTCTTCACTT+AGG - chr1.1:57495150-57495169 None:intergenic 30.0%
!! ATCAAAGTTCTAAGGTCTAT+AGG + chr1.1:57495550-57495569 MS.gene062239:intron 30.0%
TGATGAGTTCTTGAACTTGA+TGG + chr1.1:57495450-57495469 MS.gene062239:CDS 35.0%
TTGTTTGACAAAGATGGAGA+TGG + chr1.1:57495190-57495209 MS.gene062239:CDS 35.0%
! ACAGAACCAAACTTAGTCTT+TGG - chr1.1:57495609-57495628 None:intergenic 35.0%
!! ATAAGTGAAGTTGATGCAGA+TGG + chr1.1:57495409-57495428 MS.gene062239:CDS 35.0%
AGACACGTGATGATCAATCT+AGG + chr1.1:57496166-57496185 MS.gene062239:CDS 40.0%
ATCTTGTAGCTCTTCTTCAG+TGG - chr1.1:57495386-57495405 None:intergenic 40.0%
CAGCTAATATTCACTGCTTG+TGG - chr1.1:57495944-57495963 None:intergenic 40.0%
GTTAACAGGTTGCATTACTG+TGG + chr1.1:57495321-57495340 MS.gene062239:intron 40.0%
TCTTGTAGCTCTTCTTCAGT+GGG - chr1.1:57495385-57495404 None:intergenic 40.0%
! AGTTCTTGAACTTGATGGCT+AGG + chr1.1:57495455-57495474 MS.gene062239:CDS 40.0%
GAAGCAGATATGGATGGTGA+TGG + chr1.1:57496229-57496248 MS.gene062239:CDS 45.0%
GGAACTTAGAGAGGCTTTCA+AGG + chr1.1:57495664-57495683 MS.gene062239:CDS 45.0%
TCACTGCTTGTGGAAACGTA+CGG - chr1.1:57495934-57495953 None:intergenic 45.0%
TGGCTATATATCAGCCAGTG+AGG + chr1.1:57495706-57495725 MS.gene062239:CDS 45.0%
! CATTTAGGACACTGATGCAG+AGG + chr1.1:57495640-57495659 MS.gene062239:intron 45.0%
!! GAAGTTGATGCAGATGGCAA+TGG + chr1.1:57495415-57495434 MS.gene062239:CDS 45.0%
TGCAGAGGAGGAACTTAGAG+AGG + chr1.1:57495655-57495674 MS.gene062239:CDS 50.0%
TTAGGACACTGATGCAGAGG+AGG + chr1.1:57495643-57495662 MS.gene062239:intron 50.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 57495136 57496300 57495136 ID=MS.gene062239
chr1.1 mRNA 57495136 57496300 57495136 ID=MS.gene062239.t1;Parent=MS.gene062239
chr1.1 exon 57495136 57495211 57495136 ID=MS.gene062239.t1.exon1;Parent=MS.gene062239.t1
chr1.1 CDS 57495136 57495211 57495136 ID=cds.MS.gene062239.t1;Parent=MS.gene062239.t1
chr1.1 exon 57495329 57495486 57495329 ID=MS.gene062239.t1.exon2;Parent=MS.gene062239.t1
chr1.1 CDS 57495329 57495486 57495329 ID=cds.MS.gene062239.t1;Parent=MS.gene062239.t1
chr1.1 exon 57495647 57495727 57495647 ID=MS.gene062239.t1.exon3;Parent=MS.gene062239.t1
chr1.1 CDS 57495647 57495727 57495647 ID=cds.MS.gene062239.t1;Parent=MS.gene062239.t1
chr1.1 exon 57496163 57496300 57496163 ID=MS.gene062239.t1.exon4;Parent=MS.gene062239.t1
chr1.1 CDS 57496163 57496300 57496163 ID=cds.MS.gene062239.t1;Parent=MS.gene062239.t1
Gene Sequence

>MS.gene062239

ATGGCACATGTCCTAAGTGAAGAACAAATTGTTGATTTCAAAGAAGCCTTTAGTTTGTTTGACAAAGATGGAGATGGTGAGTTTAATTTCTCCTTTTTTCACAGAATTCTCATCACTATCATACATCATCATCACATGCATATATGATATGATTGTTTAAAAATTGTGTTAATCATGTTGAATGTGTTAACAGGTTGCATTACTGTGGAAGAATTAGCCACTGTTATTAGGTCATTAGATCAGAATCCCACTGAAGAAGAGCTACAAGATATGATAAGTGAAGTTGATGCAGATGGCAATGGAACCATTGAATTTGATGAGTTCTTGAACTTGATGGCTAGGAAAATGAAAGTAATAACATATATATTTTCCTTCCATTCTATTCATTATTTATTATTTATTTATACATTCAATATCAAAGTTCTAAGGTCTATAGGCTTCATATACATTTTATTATTATTCAATAATAACCAAAGACTAAGTTTGGTTCTGTTATTTTATTTTCATTTAGGACACTGATGCAGAGGAGGAACTTAGAGAGGCTTTCAAGGTCTTTGACAAAGATCAAAATGGCTATATATCAGCCAGTGAGGTATATAAAATTGTTTCTATTTTGTAAAGTAAATTTCTTTTTATTTCAAATATTCATACCCATATAGAGAGTTATTTTTTCTATTTACTTTTTAAAGTACAAATTTTAAATATAGCAAAAGCAAATTTTTTGCAATTTTGTTTTCATAAAAATGTAAATTTGTTGCATTTTTTTATATGCACATGCATATCTAGGACAGTACACCGTACGTTTCCACAAGCAGTGAATATTAGCTGTATAATGATAAGATAGTTATTAAGATAGCAATGAATATGCAATGATAAGATAGAATCTTTTACACTATTTTTTTTTTTTTTTCCTTCTCTACTTATATATCTTGTATTGTACATGAAGGCATAAACATGCATATTCTATAGTGAAATTTCCGATGGTAAAAATTTAGTGGTAAAAATTGTGTGTGTGTATGTTGTGCAGTTGAGACACGTGATGATCAATCTAGGTGAAAAACTTAGTAATGAAGAGGTAGAGCAGATGATTAAAGAAGCAGATATGGATGGTGATGGTCAAGTTGACTTTGATGAATTCGTCAAGATGATGATGACCATTCGATGA

Protein sequence

>MS.gene062239.t1

MAHVLSEEQIVDFKEAFSLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTIEFDEFLNLMARKMKDTDAEEELREAFKVFDKDQNGYISASELRHVMINLGEKLSNEEVEQMIKEADMDGDGQVDFDEFVKMMMTIR