AlfalfaGEDB | MS.gene29794

M. sativa cultivar XinJiangDaYe / MS.gene29794

KEGG: K13448
GO: GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872
PFAM: PF13499.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29794.t1	AES72346.1	95.5	44	2	0	1	44	1	44	2.50E-14	88.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29794.t1	G7J5J1	95.5	44	2	0	1	44	2	45	1.8e-14	88.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04915	MS.gene29794	0.833291	5.80E-56	-1.69E-46
MS.gene04917	MS.gene29794	0.837043	6.56E-57	-1.69E-46
MS.gene049283	MS.gene29794	0.8378	4.20E-57	-1.69E-46
MS.gene049861	MS.gene29794	0.805845	1.10E-49	-1.69E-46
MS.gene04998	MS.gene29794	0.900048	1.08E-77	-1.69E-46
MS.gene049983	MS.gene29794	0.819974	8.76E-53	-1.69E-46
MS.gene050253	MS.gene29794	0.806309	8.76E-50	-1.69E-46
MS.gene050359	MS.gene29794	0.808542	2.94E-50	-1.69E-46
MS.gene050414	MS.gene29794	0.806145	9.48E-50	-1.69E-46
MS.gene050646	MS.gene29794	0.801129	1.04E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene000724	MS.gene29794	PPI
MS.gene000738	MS.gene29794	PPI
MS.gene001246	MS.gene29794	PPI
MS.gene003880	MS.gene29794	PPI
MS.gene004899	MS.gene29794	PPI
MS.gene008225	MS.gene29794	PPI
MS.gene008831	MS.gene29794	PPI
MS.gene009021	MS.gene29794	PPI
MS.gene013748	MS.gene29794	PPI
MS.gene015470	MS.gene29794	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29794.t1	MTR_3g089090	95.683	139	6	0	1	139	1	139	5.12e-93	265
MS.gene29794.t1	MTR_3g089070	95.683	139	6	0	1	139	2	140	5.72e-93	265
MS.gene29794.t1	MTR_4g103630	72.993	137	37	0	3	139	4	140	2.92e-68	202
MS.gene29794.t1	MTR_4g103650	74.436	133	34	0	6	138	3	135	4.95e-67	199
MS.gene29794.t1	MTR_4g103655	72.794	136	37	0	3	138	4	139	8.10e-67	199
MS.gene29794.t1	MTR_6g023460	54.745	137	62	0	2	138	5	141	4.72e-51	159
MS.gene29794.t1	MTR_8g078270	48.148	135	69	1	5	138	53	187	5.98e-35	120
MS.gene29794.t1	MTR_3g067610	38.931	131	77	1	9	139	9	136	2.57e-28	101
MS.gene29794.t1	MTR_5g079340	40.152	132	75	2	9	138	8	137	1.51e-27	99.8
MS.gene29794.t1	MTR_7g075040	40.972	144	75	4	6	139	48	191	2.36e-27	100

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29794.t1	AT1G76650	45.652	138	75	0	2	139	40	177	1.37e-36	124
MS.gene29794.t1	AT1G76650	45.652	138	75	0	2	139	40	177	1.37e-36	124
MS.gene29794.t1	AT1G76640	45.455	143	71	3	2	139	19	159	6.13e-34	116
MS.gene29794.t1	AT3G50770	46.715	137	67	2	8	138	67	203	8.49e-34	117
MS.gene29794.t1	AT1G76650	44.203	138	67	1	2	139	40	167	1.89e-33	115
MS.gene29794.t1	AT5G42380	42.857	133	74	1	9	139	53	185	8.15e-32	112
MS.gene29794.t1	AT1G24620	40.299	134	79	1	6	138	38	171	2.68e-27	100
MS.gene29794.t1	AT3G01830	39.416	137	78	2	6	139	12	146	4.70e-26	95.9
MS.gene29794.t1	AT5G37770	35.971	139	84	1	6	139	18	156	4.72e-25	94.0
MS.gene29794.t1	AT5G37770	35.971	139	84	1	6	139	18	156	4.72e-25	94.0

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Find 27 sgRNAs with CRISPR-Local

Find 32 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGACAAAGGCTGGGAGTAA+TGG	0.460108	3.4:-73418123	MS.gene29794:CDS
AAGAGGATGCTTAAGAAGAT+GGG	0.484014	3.4:-73417906	MS.gene29794:CDS
AGAAGCTGAAATGGCTATTG+AGG	0.481748	3.4:-73418081	MS.gene29794:CDS
AGACAAAGGCTGGGAGTAAT+GGG	0.401953	3.4:-73418122	MS.gene29794:CDS
AGCAGAGCTAAGACAAAGGC+TGG	0.426380	3.4:-73418132	MS.gene29794:CDS
AGCATCCTCTTCAAATTCTT+TGG	0.258063	3.4:+73417918	None:intergenic
AGCCTTTGTCTTAGCTCTGC+TGG	0.405548	3.4:+73418134	None:intergenic
ATGTATGATAGTGAGAAGTG+TGG	0.644233	3.4:-73417951	MS.gene29794:CDS
ATTATAAAAGATGAAGAACG+CGG	0.665781	3.4:-73418210	None:intergenic
ATTGAGGCAATGGATTCAGA+TGG	0.638749	3.4:-73418065	MS.gene29794:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAACACCAAAGAATTTGAAG+AGG	-	chr3.4:73418080-73418099	MS.gene29794:CDS	30.0%
TTTGTTGAAAGAAGCTGAAA+TGG	-	chr3.4:73417913-73417932	MS.gene29794:CDS	30.0%
AAGAGGATGCTTAAGAAGAT+GGG	-	chr3.4:73418097-73418116	MS.gene29794:CDS	35.0%
AGCATCCTCTTCAAATTCTT+TGG	+	chr3.4:73418088-73418107	None:intergenic	35.0%
GGAATTAATTGCTTTGATGG+AGG	-	chr3.4:73417982-73418001	MS.gene29794:CDS	35.0%
GGAGGAATTAATTGCTTTGA+TGG	-	chr3.4:73417979-73417998	MS.gene29794:CDS	35.0%
TTAATTGCTTTGATGGAGGA+AGG	-	chr3.4:73417986-73418005	MS.gene29794:CDS	35.0%
AGAAGCTGAAATGGCTATTG+AGG	-	chr3.4:73417922-73417941	MS.gene29794:CDS	40.0%
GAAGAGGATGCTTAAGAAGA+TGG	-	chr3.4:73418096-73418115	MS.gene29794:CDS	40.0%
TGAAATGGCTATTGAGGCAA+TGG	-	chr3.4:73417928-73417947	MS.gene29794:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	73417803	73418222	73417803	ID=MS.gene29794
chr3.4	mRNA	73417803	73418222	73417803	ID=MS.gene29794.t1;Parent=MS.gene29794
chr3.4	exon	73417803	73418222	73417803	ID=MS.gene29794.t1.exon1;Parent=MS.gene29794.t1
chr3.4	CDS	73417803	73418222	73417803	ID=cds.MS.gene29794.t1;Parent=MS.gene29794.t1

Gene Sequence

>MS.gene29794

ATGAAGAACGCGGGATTCGAGCATGTTCTTAGATATTTTGATGAAGATGGTGATGGAAAGGTTTCACCAGCAGAGCTAAGACAAAGGCTGGGAGTAATGGGAGAAGAGATTTTGTTGAAAGAAGCTGAAATGGCTATTGAGGCAATGGATTCAGATGGTGATGGATATTTGAGTTTGGAGGAATTAATTGCTTTGATGGAGGAAGGTGGAGAGGAACAAAAGTTGAAGGATTTGAGAGATGCATTTGAGATGTATGATAGTGAGAAGTGTGGATTTATAACACCAAAGAATTTGAAGAGGATGCTTAAGAAGATGGGTGAGTCTAAGTCTATTGATGAATGTAAAGCTATGATTAAACATTTTGATTTGGATGGGGATGGTTTGCTTAGCTTTGATGAATTCACAGTAATGATGCAGTGA

Protein sequence

>MS.gene29794.t1

MKNAGFEHVLRYFDEDGDGKVSPAELRQRLGVMGEEILLKEAEMAIEAMDSDGDGYLSLEELIALMEEGGEEQKLKDLRDAFEMYDSEKCGFITPKNLKRMLKKMGESKSIDECKAMIKHFDLDGDGLLSFDEFTVMMQ