Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061261.t1 | XP_003609790.1 | 93.9 | 163 | 10 | 0 | 1 | 163 | 1 | 163 | 7.90E-84 | 319.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061261.t1 | Q9FDX6 | 58.0 | 162 | 54 | 3 | 1 | 153 | 1 | 157 | 1.0e-44 | 181.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061261.t1 | G7JNY0 | 93.9 | 163 | 10 | 0 | 1 | 163 | 1 | 163 | 5.7e-84 | 319.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061261.t1 | MTR_4g122260 | 93.865 | 163 | 10 | 0 | 1 | 163 | 1 | 163 | 4.71e-111 | 313 |
MS.gene061261.t1 | MTR_1g076650 | 29.252 | 147 | 96 | 3 | 10 | 154 | 6 | 146 | 4.62e-14 | 65.9 |
MS.gene061261.t1 | MTR_1g071150 | 28.378 | 148 | 101 | 2 | 10 | 157 | 6 | 148 | 7.67e-14 | 65.5 |
MS.gene061261.t1 | MTR_5g017550 | 28.477 | 151 | 103 | 3 | 4 | 154 | 36 | 181 | 3.17e-13 | 64.7 |
MS.gene061261.t1 | MTR_8g066630 | 28.148 | 135 | 94 | 2 | 15 | 148 | 16 | 148 | 3.34e-12 | 61.2 |
MS.gene061261.t1 | MTR_1g041285 | 28.105 | 153 | 96 | 4 | 7 | 154 | 3 | 146 | 5.28e-11 | 57.8 |
MS.gene061261.t1 | MTR_7g115040 | 28.777 | 139 | 95 | 2 | 16 | 154 | 12 | 146 | 6.18e-11 | 57.8 |
MS.gene061261.t1 | MTR_5g017510 | 25.828 | 151 | 108 | 2 | 4 | 154 | 36 | 182 | 9.34e-11 | 58.2 |
MS.gene061261.t1 | MTR_5g017560 | 25.828 | 151 | 108 | 2 | 4 | 154 | 36 | 182 | 9.34e-11 | 58.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061261.t1 | AT5G49480 | 57.669 | 163 | 55 | 3 | 1 | 154 | 1 | 158 | 1.96e-56 | 174 |
MS.gene061261.t1 | AT3G22930 | 29.333 | 150 | 98 | 3 | 10 | 157 | 29 | 172 | 2.90e-14 | 67.0 |
MS.gene061261.t1 | AT4G14640 | 28.873 | 142 | 93 | 3 | 15 | 154 | 12 | 147 | 1.29e-12 | 62.4 |
MS.gene061261.t1 | AT4G37010 | 26.115 | 157 | 104 | 3 | 6 | 154 | 13 | 165 | 2.67e-12 | 62.0 |
MS.gene061261.t1 | AT4G37010 | 26.115 | 157 | 104 | 3 | 6 | 154 | 9 | 161 | 2.70e-12 | 61.6 |
MS.gene061261.t1 | AT1G18530 | 27.397 | 146 | 101 | 2 | 17 | 159 | 8 | 151 | 1.74e-11 | 59.3 |
MS.gene061261.t1 | AT3G43810 | 24.324 | 148 | 100 | 3 | 15 | 158 | 11 | 150 | 8.93e-11 | 58.5 |
Find 60 sgRNAs with CRISPR-Local
Find 59 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCTACTGATGAAGAGATTA+AGG | 0.345504 | 8.3:-6393584 | MS.gene061261:CDS |
TGGAGATTTGAAGAATTATA+TGG | 0.346456 | 8.3:-6393623 | MS.gene061261:CDS |
AAGTCGGTTGTGCTAGGTTG+TGG | 0.373923 | 8.3:+6393928 | None:intergenic |
TTTGAAGAATTATATGGCTT+GGG | 0.391177 | 8.3:-6393617 | MS.gene061261:CDS |
AACATCATCATGTGTCCATC+TGG | 0.418396 | 8.3:-6393964 | None:intergenic |
ACAGTCACAGGTGGCGTGAA+TGG | 0.423179 | 8.3:-6393829 | MS.gene061261:CDS |
AACGGTGGCGTTAGCTTCGA+TGG | 0.425296 | 8.3:-6393532 | MS.gene061261:CDS |
ATTTGAAGAATTATATGGCT+TGG | 0.438657 | 8.3:-6393618 | MS.gene061261:CDS |
AATTAATTGAATCAATTAGC+TGG | 0.438984 | 8.3:+6393475 | None:intergenic |
TAGGTTGTGGGCGGAGGCTA+CGG | 0.443861 | 8.3:+6393941 | None:intergenic |
GAAAAGAGACCGTTGGGATG+TGG | 0.454346 | 8.3:-6393703 | MS.gene061261:CDS |
GGTCGGAAGTCGGTTGTGCT+AGG | 0.461824 | 8.3:+6393922 | None:intergenic |
AGTCGGTTGTGCTAGGTTGT+GGG | 0.462510 | 8.3:+6393929 | None:intergenic |
ATTCACGCCACCTGTGACTG+TGG | 0.465058 | 8.3:+6393831 | None:intergenic |
TTGTGCTAGGTTGTGGGCGG+AGG | 0.474583 | 8.3:+6393935 | None:intergenic |
AAGAATTATATGGCTTGGGC+TGG | 0.482717 | 8.3:-6393613 | MS.gene061261:CDS |
CTCCACGAATCCATCCTTGT+TGG | 0.484249 | 8.3:+6393765 | None:intergenic |
ATTAAGGCTATGATTAAGCT+TGG | 0.501005 | 8.3:-6393568 | MS.gene061261:CDS |
AATGGAGAAAAGAGACCGTT+GGG | 0.504276 | 8.3:-6393709 | MS.gene061261:CDS |
CGGTGCCATGATGTCGGTGG+CGG | 0.526043 | 8.3:-6393791 | MS.gene061261:CDS |
ACCGTTGGGATGTGGGGCCA+TGG | 0.531531 | 8.3:-6393695 | MS.gene061261:CDS |
AAAAGAGACCGTTGGGATGT+GGG | 0.534041 | 8.3:-6393702 | MS.gene061261:CDS |
GGCCATGGAAGATGTGTTCA+AGG | 0.543484 | 8.3:-6393680 | MS.gene061261:CDS |
GGAAGATGTGTTCAAGGTGA+TGG | 0.543516 | 8.3:-6393674 | MS.gene061261:CDS |
CACCTTGAACACATCTTCCA+TGG | 0.544540 | 8.3:+6393678 | None:intergenic |
TCATTCTACGCCACAGTCAC+AGG | 0.546712 | 8.3:-6393841 | MS.gene061261:CDS |
CAATGGAGAAAAGAGACCGT+TGG | 0.550950 | 8.3:-6393710 | MS.gene061261:CDS |
GGTGTCCGCCACCGACATCA+TGG | 0.552161 | 8.3:+6393786 | None:intergenic |
GGGCGGAGGCTACGGCCAGA+TGG | 0.563386 | 8.3:+6393949 | None:intergenic |
CACCAACAAGGATGGATTCG+TGG | 0.565557 | 8.3:-6393767 | MS.gene061261:CDS |
AAGGCTATGATTAAGCTTGG+TGG | 0.567678 | 8.3:-6393565 | MS.gene061261:CDS |
GAATTCGAGCGGGTGGTTAG+CGG | 0.572181 | 8.3:-6393736 | MS.gene061261:CDS |
TGTGATGGTAAGCTTAGTCA+TGG | 0.573041 | 8.3:-6393643 | MS.gene061261:CDS |
AGAATGAACGGAGGTCATCA+CGG | 0.579774 | 8.3:+6393857 | None:intergenic |
GTCGAATGCCGGTCGGAAGT+CGG | 0.582232 | 8.3:+6393912 | None:intergenic |
GTGGCGGACACCAACAAGGA+TGG | 0.583986 | 8.3:-6393775 | MS.gene061261:CDS |
AATGGAGGAGACGATGCAAT+CGG | 0.588136 | 8.3:-6393811 | MS.gene061261:CDS |
ATTCTTGACACCGATTGCGA+CGG | 0.591172 | 8.3:-6393889 | MS.gene061261:CDS |
AAAGAGACCGTTGGGATGTG+GGG | 0.600532 | 8.3:-6393701 | MS.gene061261:CDS |
CGGGTGGTTAGCGGAAACAA+TGG | 0.602363 | 8.3:-6393727 | MS.gene061261:CDS |
GTGTCAAGAATGTCGAATGC+CGG | 0.603408 | 8.3:+6393901 | None:intergenic |
GTCACAGGTGGCGTGAATGG+AGG | 0.607930 | 8.3:-6393826 | MS.gene061261:CDS |
GGAGTACGAGGAATTCGAGC+GGG | 0.609161 | 8.3:-6393746 | MS.gene061261:CDS |
TAGCACAACCGACTTCCGAC+CGG | 0.613292 | 8.3:-6393920 | MS.gene061261:CDS |
CAAGAATGTCGAATGCCGGT+CGG | 0.616779 | 8.3:+6393905 | None:intergenic |
CTTGGTGGTGGTGATCAAAA+CGG | 0.629557 | 8.3:-6393550 | MS.gene061261:CDS |
GGATGGATTCGTGGAGTACG+AGG | 0.629636 | 8.3:-6393758 | MS.gene061261:CDS |
GTCGGTGGCGGACACCAACA+AGG | 0.635758 | 8.3:-6393779 | MS.gene061261:CDS |
TCCATGGCCCCACATCCCAA+CGG | 0.637931 | 8.3:+6393694 | None:intergenic |
TGCAATCGGTGCCATGATGT+CGG | 0.643160 | 8.3:-6393797 | MS.gene061261:CDS |
GTACGAGGAATTCGAGCGGG+TGG | 0.644464 | 8.3:-6393743 | MS.gene061261:CDS |
CGGTTGTGCTAGGTTGTGGG+CGG | 0.647620 | 8.3:+6393932 | None:intergenic |
TGACTGTGGCGTAGAATGAA+CGG | 0.660507 | 8.3:+6393845 | None:intergenic |
GCTATGATTAAGCTTGGTGG+TGG | 0.672010 | 8.3:-6393562 | MS.gene061261:CDS |
TTCTACGCCACAGTCACAGG+TGG | 0.673372 | 8.3:-6393838 | MS.gene061261:CDS |
AATCGGTGCCATGATGTCGG+TGG | 0.708734 | 8.3:-6393794 | MS.gene061261:CDS |
GGTGGTGGTGATCAAAACGG+TGG | 0.729393 | 8.3:-6393547 | MS.gene061261:CDS |
TGGAGTACGAGGAATTCGAG+CGG | 0.729660 | 8.3:-6393747 | MS.gene061261:CDS |
GTGATGGATAGAGATTGTGA+TGG | 0.773795 | 8.3:-6393658 | MS.gene061261:CDS |
CTGTGGCGTAGAATGAACGG+AGG | 0.784689 | 8.3:+6393848 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | ATTTGAAGAATTATATGGCT+TGG | - | chr8.3:6393823-6393842 | MS.gene061261:CDS | 25.0% |
! | TGGAGATTTGAAGAATTATA+TGG | - | chr8.3:6393818-6393837 | MS.gene061261:CDS | 25.0% |
! | TTTGAAGAATTATATGGCTT+GGG | - | chr8.3:6393824-6393843 | MS.gene061261:CDS | 25.0% |
ATTAAGGCTATGATTAAGCT+TGG | - | chr8.3:6393873-6393892 | MS.gene061261:CDS | 30.0% | |
TGCTACTGATGAAGAGATTA+AGG | - | chr8.3:6393857-6393876 | MS.gene061261:CDS | 35.0% | |
AAGGCTATGATTAAGCTTGG+TGG | - | chr8.3:6393876-6393895 | MS.gene061261:CDS | 40.0% | |
AATGGAGAAAAGAGACCGTT+GGG | - | chr8.3:6393732-6393751 | MS.gene061261:CDS | 40.0% | |
TGTGATGGTAAGCTTAGTCA+TGG | - | chr8.3:6393798-6393817 | MS.gene061261:CDS | 40.0% | |
! | AAGAATTATATGGCTTGGGC+TGG | - | chr8.3:6393828-6393847 | MS.gene061261:CDS | 40.0% |
!! | GTGATGGATAGAGATTGTGA+TGG | - | chr8.3:6393783-6393802 | MS.gene061261:CDS | 40.0% |
AAAAGAGACCGTTGGGATGT+GGG | - | chr8.3:6393739-6393758 | MS.gene061261:CDS | 45.0% | |
AATGGAGGAGACGATGCAAT+CGG | - | chr8.3:6393630-6393649 | MS.gene061261:CDS | 45.0% | |
AGAATGAACGGAGGTCATCA+CGG | + | chr8.3:6393587-6393606 | None:intergenic | 45.0% | |
CAATGGAGAAAAGAGACCGT+TGG | - | chr8.3:6393731-6393750 | MS.gene061261:CDS | 45.0% | |
CACCTTGAACACATCTTCCA+TGG | + | chr8.3:6393766-6393785 | None:intergenic | 45.0% | |
GGAAGATGTGTTCAAGGTGA+TGG | - | chr8.3:6393767-6393786 | MS.gene061261:CDS | 45.0% | |
GTGTCAAGAATGTCGAATGC+CGG | + | chr8.3:6393543-6393562 | None:intergenic | 45.0% | |
TGACTGTGGCGTAGAATGAA+CGG | + | chr8.3:6393599-6393618 | None:intergenic | 45.0% | |
! | ATTCTTGACACCGATTGCGA+CGG | - | chr8.3:6393552-6393571 | MS.gene061261:CDS | 45.0% |
! | GCTATGATTAAGCTTGGTGG+TGG | - | chr8.3:6393879-6393898 | MS.gene061261:CDS | 45.0% |
!! | CTTGGTGGTGGTGATCAAAA+CGG | - | chr8.3:6393891-6393910 | MS.gene061261:CDS | 45.0% |
!!! | GCTTATTTTGCCGTCGCAAT+CGG | + | chr8.3:6393565-6393584 | None:intergenic | 45.0% |
AAAGAGACCGTTGGGATGTG+GGG | - | chr8.3:6393740-6393759 | MS.gene061261:CDS | 50.0% | |
AAGTCGGTTGTGCTAGGTTG+TGG | + | chr8.3:6393516-6393535 | None:intergenic | 50.0% | |
AGTCGGTTGTGCTAGGTTGT+GGG | + | chr8.3:6393515-6393534 | None:intergenic | 50.0% | |
CAAGAATGTCGAATGCCGGT+CGG | + | chr8.3:6393539-6393558 | None:intergenic | 50.0% | |
CTCCACGAATCCATCCTTGT+TGG | + | chr8.3:6393679-6393698 | None:intergenic | 50.0% | |
GAAAAGAGACCGTTGGGATG+TGG | - | chr8.3:6393738-6393757 | MS.gene061261:CDS | 50.0% | |
GGCCATGGAAGATGTGTTCA+AGG | - | chr8.3:6393761-6393780 | MS.gene061261:CDS | 50.0% | |
TCATTCTACGCCACAGTCAC+AGG | - | chr8.3:6393600-6393619 | MS.gene061261:CDS | 50.0% | |
TGGAGTACGAGGAATTCGAG+CGG | - | chr8.3:6393694-6393713 | MS.gene061261:CDS | 50.0% | |
! | CACCAACAAGGATGGATTCG+TGG | - | chr8.3:6393674-6393693 | MS.gene061261:CDS | 50.0% |
!! | TGCAATCGGTGCCATGATGT+CGG | - | chr8.3:6393644-6393663 | MS.gene061261:CDS | 50.0% |
ACAGTCACAGGTGGCGTGAA+TGG | - | chr8.3:6393612-6393631 | MS.gene061261:CDS | 55.0% | |
ATTCACGCCACCTGTGACTG+TGG | + | chr8.3:6393613-6393632 | None:intergenic | 55.0% | |
CGGGTGGTTAGCGGAAACAA+TGG | - | chr8.3:6393714-6393733 | MS.gene061261:CDS | 55.0% | |
CTGTGGCGTAGAATGAACGG+AGG | + | chr8.3:6393596-6393615 | None:intergenic | 55.0% | |
GAATTCGAGCGGGTGGTTAG+CGG | - | chr8.3:6393705-6393724 | MS.gene061261:CDS | 55.0% | |
GGAGTACGAGGAATTCGAGC+GGG | - | chr8.3:6393695-6393714 | MS.gene061261:CDS | 55.0% | |
TTCTACGCCACAGTCACAGG+TGG | - | chr8.3:6393603-6393622 | MS.gene061261:CDS | 55.0% | |
! | AACGGTGGCGTTAGCTTCGA+TGG | - | chr8.3:6393909-6393928 | MS.gene061261:CDS | 55.0% |
! | GGATGGATTCGTGGAGTACG+AGG | - | chr8.3:6393683-6393702 | MS.gene061261:CDS | 55.0% |
! | GGTGGTGGTGATCAAAACGG+TGG | - | chr8.3:6393894-6393913 | MS.gene061261:CDS | 55.0% |
! | TAGCACAACCGACTTCCGAC+CGG | - | chr8.3:6393521-6393540 | MS.gene061261:CDS | 55.0% |
!! | AATCGGTGCCATGATGTCGG+TGG | - | chr8.3:6393647-6393666 | MS.gene061261:CDS | 55.0% |
CGGTTGTGCTAGGTTGTGGG+CGG | + | chr8.3:6393512-6393531 | None:intergenic | 60.0% | |
GGTCGGAAGTCGGTTGTGCT+AGG | + | chr8.3:6393522-6393541 | None:intergenic | 60.0% | |
GTACGAGGAATTCGAGCGGG+TGG | - | chr8.3:6393698-6393717 | MS.gene061261:CDS | 60.0% | |
GTCACAGGTGGCGTGAATGG+AGG | - | chr8.3:6393615-6393634 | MS.gene061261:CDS | 60.0% | |
GTCGAATGCCGGTCGGAAGT+CGG | + | chr8.3:6393532-6393551 | None:intergenic | 60.0% | |
TAGGTTGTGGGCGGAGGCTA+CGG | + | chr8.3:6393503-6393522 | None:intergenic | 60.0% | |
TCCATGGCCCCACATCCCAA+CGG | + | chr8.3:6393750-6393769 | None:intergenic | 60.0% | |
TTGTGCTAGGTTGTGGGCGG+AGG | + | chr8.3:6393509-6393528 | None:intergenic | 60.0% | |
!! | GTGGCGGACACCAACAAGGA+TGG | - | chr8.3:6393666-6393685 | MS.gene061261:CDS | 60.0% |
ACCGTTGGGATGTGGGGCCA+TGG | - | chr8.3:6393746-6393765 | MS.gene061261:CDS | 65.0% | |
GGTGTCCGCCACCGACATCA+TGG | + | chr8.3:6393658-6393677 | None:intergenic | 65.0% | |
!! | CGGTGCCATGATGTCGGTGG+CGG | - | chr8.3:6393650-6393669 | MS.gene061261:CDS | 65.0% |
!! | GTCGGTGGCGGACACCAACA+AGG | - | chr8.3:6393662-6393681 | MS.gene061261:CDS | 65.0% |
GGGCGGAGGCTACGGCCAGA+TGG | + | chr8.3:6393495-6393514 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 6393486 | 6393977 | 6393486 | ID=MS.gene061261 |
chr8.3 | mRNA | 6393486 | 6393977 | 6393486 | ID=MS.gene061261.t1;Parent=MS.gene061261 |
chr8.3 | exon | 6393486 | 6393977 | 6393486 | ID=MS.gene061261.t1.exon1;Parent=MS.gene061261.t1 |
chr8.3 | CDS | 6393486 | 6393977 | 6393486 | ID=cds.MS.gene061261.t1;Parent=MS.gene061261.t1 |
Gene Sequence |
Protein sequence |