Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061261.t1 | XP_003609790.1 | 93.9 | 163 | 10 | 0 | 1 | 163 | 1 | 163 | 7.90E-84 | 319.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061261.t1 | Q9FDX6 | 58.0 | 162 | 54 | 3 | 1 | 153 | 1 | 157 | 1.0e-44 | 181.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061261.t1 | G7JNY0 | 93.9 | 163 | 10 | 0 | 1 | 163 | 1 | 163 | 5.7e-84 | 319.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061261.t1 | MTR_4g122260 | 93.865 | 163 | 10 | 0 | 1 | 163 | 1 | 163 | 4.71e-111 | 313 |
| MS.gene061261.t1 | MTR_1g076650 | 29.252 | 147 | 96 | 3 | 10 | 154 | 6 | 146 | 4.62e-14 | 65.9 |
| MS.gene061261.t1 | MTR_1g071150 | 28.378 | 148 | 101 | 2 | 10 | 157 | 6 | 148 | 7.67e-14 | 65.5 |
| MS.gene061261.t1 | MTR_5g017550 | 28.477 | 151 | 103 | 3 | 4 | 154 | 36 | 181 | 3.17e-13 | 64.7 |
| MS.gene061261.t1 | MTR_8g066630 | 28.148 | 135 | 94 | 2 | 15 | 148 | 16 | 148 | 3.34e-12 | 61.2 |
| MS.gene061261.t1 | MTR_1g041285 | 28.105 | 153 | 96 | 4 | 7 | 154 | 3 | 146 | 5.28e-11 | 57.8 |
| MS.gene061261.t1 | MTR_7g115040 | 28.777 | 139 | 95 | 2 | 16 | 154 | 12 | 146 | 6.18e-11 | 57.8 |
| MS.gene061261.t1 | MTR_5g017510 | 25.828 | 151 | 108 | 2 | 4 | 154 | 36 | 182 | 9.34e-11 | 58.2 |
| MS.gene061261.t1 | MTR_5g017560 | 25.828 | 151 | 108 | 2 | 4 | 154 | 36 | 182 | 9.34e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061261.t1 | AT5G49480 | 57.669 | 163 | 55 | 3 | 1 | 154 | 1 | 158 | 1.96e-56 | 174 |
| MS.gene061261.t1 | AT3G22930 | 29.333 | 150 | 98 | 3 | 10 | 157 | 29 | 172 | 2.90e-14 | 67.0 |
| MS.gene061261.t1 | AT4G14640 | 28.873 | 142 | 93 | 3 | 15 | 154 | 12 | 147 | 1.29e-12 | 62.4 |
| MS.gene061261.t1 | AT4G37010 | 26.115 | 157 | 104 | 3 | 6 | 154 | 13 | 165 | 2.67e-12 | 62.0 |
| MS.gene061261.t1 | AT4G37010 | 26.115 | 157 | 104 | 3 | 6 | 154 | 9 | 161 | 2.70e-12 | 61.6 |
| MS.gene061261.t1 | AT1G18530 | 27.397 | 146 | 101 | 2 | 17 | 159 | 8 | 151 | 1.74e-11 | 59.3 |
| MS.gene061261.t1 | AT3G43810 | 24.324 | 148 | 100 | 3 | 15 | 158 | 11 | 150 | 8.93e-11 | 58.5 |
Find 60 sgRNAs with CRISPR-Local
Find 59 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTACTGATGAAGAGATTA+AGG | 0.345504 | 8.3:-6393584 | MS.gene061261:CDS |
| TGGAGATTTGAAGAATTATA+TGG | 0.346456 | 8.3:-6393623 | MS.gene061261:CDS |
| AAGTCGGTTGTGCTAGGTTG+TGG | 0.373923 | 8.3:+6393928 | None:intergenic |
| TTTGAAGAATTATATGGCTT+GGG | 0.391177 | 8.3:-6393617 | MS.gene061261:CDS |
| AACATCATCATGTGTCCATC+TGG | 0.418396 | 8.3:-6393964 | None:intergenic |
| ACAGTCACAGGTGGCGTGAA+TGG | 0.423179 | 8.3:-6393829 | MS.gene061261:CDS |
| AACGGTGGCGTTAGCTTCGA+TGG | 0.425296 | 8.3:-6393532 | MS.gene061261:CDS |
| ATTTGAAGAATTATATGGCT+TGG | 0.438657 | 8.3:-6393618 | MS.gene061261:CDS |
| AATTAATTGAATCAATTAGC+TGG | 0.438984 | 8.3:+6393475 | None:intergenic |
| TAGGTTGTGGGCGGAGGCTA+CGG | 0.443861 | 8.3:+6393941 | None:intergenic |
| GAAAAGAGACCGTTGGGATG+TGG | 0.454346 | 8.3:-6393703 | MS.gene061261:CDS |
| GGTCGGAAGTCGGTTGTGCT+AGG | 0.461824 | 8.3:+6393922 | None:intergenic |
| AGTCGGTTGTGCTAGGTTGT+GGG | 0.462510 | 8.3:+6393929 | None:intergenic |
| ATTCACGCCACCTGTGACTG+TGG | 0.465058 | 8.3:+6393831 | None:intergenic |
| TTGTGCTAGGTTGTGGGCGG+AGG | 0.474583 | 8.3:+6393935 | None:intergenic |
| AAGAATTATATGGCTTGGGC+TGG | 0.482717 | 8.3:-6393613 | MS.gene061261:CDS |
| CTCCACGAATCCATCCTTGT+TGG | 0.484249 | 8.3:+6393765 | None:intergenic |
| ATTAAGGCTATGATTAAGCT+TGG | 0.501005 | 8.3:-6393568 | MS.gene061261:CDS |
| AATGGAGAAAAGAGACCGTT+GGG | 0.504276 | 8.3:-6393709 | MS.gene061261:CDS |
| CGGTGCCATGATGTCGGTGG+CGG | 0.526043 | 8.3:-6393791 | MS.gene061261:CDS |
| ACCGTTGGGATGTGGGGCCA+TGG | 0.531531 | 8.3:-6393695 | MS.gene061261:CDS |
| AAAAGAGACCGTTGGGATGT+GGG | 0.534041 | 8.3:-6393702 | MS.gene061261:CDS |
| GGCCATGGAAGATGTGTTCA+AGG | 0.543484 | 8.3:-6393680 | MS.gene061261:CDS |
| GGAAGATGTGTTCAAGGTGA+TGG | 0.543516 | 8.3:-6393674 | MS.gene061261:CDS |
| CACCTTGAACACATCTTCCA+TGG | 0.544540 | 8.3:+6393678 | None:intergenic |
| TCATTCTACGCCACAGTCAC+AGG | 0.546712 | 8.3:-6393841 | MS.gene061261:CDS |
| CAATGGAGAAAAGAGACCGT+TGG | 0.550950 | 8.3:-6393710 | MS.gene061261:CDS |
| GGTGTCCGCCACCGACATCA+TGG | 0.552161 | 8.3:+6393786 | None:intergenic |
| GGGCGGAGGCTACGGCCAGA+TGG | 0.563386 | 8.3:+6393949 | None:intergenic |
| CACCAACAAGGATGGATTCG+TGG | 0.565557 | 8.3:-6393767 | MS.gene061261:CDS |
| AAGGCTATGATTAAGCTTGG+TGG | 0.567678 | 8.3:-6393565 | MS.gene061261:CDS |
| GAATTCGAGCGGGTGGTTAG+CGG | 0.572181 | 8.3:-6393736 | MS.gene061261:CDS |
| TGTGATGGTAAGCTTAGTCA+TGG | 0.573041 | 8.3:-6393643 | MS.gene061261:CDS |
| AGAATGAACGGAGGTCATCA+CGG | 0.579774 | 8.3:+6393857 | None:intergenic |
| GTCGAATGCCGGTCGGAAGT+CGG | 0.582232 | 8.3:+6393912 | None:intergenic |
| GTGGCGGACACCAACAAGGA+TGG | 0.583986 | 8.3:-6393775 | MS.gene061261:CDS |
| AATGGAGGAGACGATGCAAT+CGG | 0.588136 | 8.3:-6393811 | MS.gene061261:CDS |
| ATTCTTGACACCGATTGCGA+CGG | 0.591172 | 8.3:-6393889 | MS.gene061261:CDS |
| AAAGAGACCGTTGGGATGTG+GGG | 0.600532 | 8.3:-6393701 | MS.gene061261:CDS |
| CGGGTGGTTAGCGGAAACAA+TGG | 0.602363 | 8.3:-6393727 | MS.gene061261:CDS |
| GTGTCAAGAATGTCGAATGC+CGG | 0.603408 | 8.3:+6393901 | None:intergenic |
| GTCACAGGTGGCGTGAATGG+AGG | 0.607930 | 8.3:-6393826 | MS.gene061261:CDS |
| GGAGTACGAGGAATTCGAGC+GGG | 0.609161 | 8.3:-6393746 | MS.gene061261:CDS |
| TAGCACAACCGACTTCCGAC+CGG | 0.613292 | 8.3:-6393920 | MS.gene061261:CDS |
| CAAGAATGTCGAATGCCGGT+CGG | 0.616779 | 8.3:+6393905 | None:intergenic |
| CTTGGTGGTGGTGATCAAAA+CGG | 0.629557 | 8.3:-6393550 | MS.gene061261:CDS |
| GGATGGATTCGTGGAGTACG+AGG | 0.629636 | 8.3:-6393758 | MS.gene061261:CDS |
| GTCGGTGGCGGACACCAACA+AGG | 0.635758 | 8.3:-6393779 | MS.gene061261:CDS |
| TCCATGGCCCCACATCCCAA+CGG | 0.637931 | 8.3:+6393694 | None:intergenic |
| TGCAATCGGTGCCATGATGT+CGG | 0.643160 | 8.3:-6393797 | MS.gene061261:CDS |
| GTACGAGGAATTCGAGCGGG+TGG | 0.644464 | 8.3:-6393743 | MS.gene061261:CDS |
| CGGTTGTGCTAGGTTGTGGG+CGG | 0.647620 | 8.3:+6393932 | None:intergenic |
| TGACTGTGGCGTAGAATGAA+CGG | 0.660507 | 8.3:+6393845 | None:intergenic |
| GCTATGATTAAGCTTGGTGG+TGG | 0.672010 | 8.3:-6393562 | MS.gene061261:CDS |
| TTCTACGCCACAGTCACAGG+TGG | 0.673372 | 8.3:-6393838 | MS.gene061261:CDS |
| AATCGGTGCCATGATGTCGG+TGG | 0.708734 | 8.3:-6393794 | MS.gene061261:CDS |
| GGTGGTGGTGATCAAAACGG+TGG | 0.729393 | 8.3:-6393547 | MS.gene061261:CDS |
| TGGAGTACGAGGAATTCGAG+CGG | 0.729660 | 8.3:-6393747 | MS.gene061261:CDS |
| GTGATGGATAGAGATTGTGA+TGG | 0.773795 | 8.3:-6393658 | MS.gene061261:CDS |
| CTGTGGCGTAGAATGAACGG+AGG | 0.784689 | 8.3:+6393848 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATTTGAAGAATTATATGGCT+TGG | - | chr8.3:6393823-6393842 | MS.gene061261:CDS | 25.0% |
| ! | TGGAGATTTGAAGAATTATA+TGG | - | chr8.3:6393818-6393837 | MS.gene061261:CDS | 25.0% |
| ! | TTTGAAGAATTATATGGCTT+GGG | - | chr8.3:6393824-6393843 | MS.gene061261:CDS | 25.0% |
| ATTAAGGCTATGATTAAGCT+TGG | - | chr8.3:6393873-6393892 | MS.gene061261:CDS | 30.0% | |
| TGCTACTGATGAAGAGATTA+AGG | - | chr8.3:6393857-6393876 | MS.gene061261:CDS | 35.0% | |
| AAGGCTATGATTAAGCTTGG+TGG | - | chr8.3:6393876-6393895 | MS.gene061261:CDS | 40.0% | |
| AATGGAGAAAAGAGACCGTT+GGG | - | chr8.3:6393732-6393751 | MS.gene061261:CDS | 40.0% | |
| TGTGATGGTAAGCTTAGTCA+TGG | - | chr8.3:6393798-6393817 | MS.gene061261:CDS | 40.0% | |
| ! | AAGAATTATATGGCTTGGGC+TGG | - | chr8.3:6393828-6393847 | MS.gene061261:CDS | 40.0% |
| !! | GTGATGGATAGAGATTGTGA+TGG | - | chr8.3:6393783-6393802 | MS.gene061261:CDS | 40.0% |
| AAAAGAGACCGTTGGGATGT+GGG | - | chr8.3:6393739-6393758 | MS.gene061261:CDS | 45.0% | |
| AATGGAGGAGACGATGCAAT+CGG | - | chr8.3:6393630-6393649 | MS.gene061261:CDS | 45.0% | |
| AGAATGAACGGAGGTCATCA+CGG | + | chr8.3:6393587-6393606 | None:intergenic | 45.0% | |
| CAATGGAGAAAAGAGACCGT+TGG | - | chr8.3:6393731-6393750 | MS.gene061261:CDS | 45.0% | |
| CACCTTGAACACATCTTCCA+TGG | + | chr8.3:6393766-6393785 | None:intergenic | 45.0% | |
| GGAAGATGTGTTCAAGGTGA+TGG | - | chr8.3:6393767-6393786 | MS.gene061261:CDS | 45.0% | |
| GTGTCAAGAATGTCGAATGC+CGG | + | chr8.3:6393543-6393562 | None:intergenic | 45.0% | |
| TGACTGTGGCGTAGAATGAA+CGG | + | chr8.3:6393599-6393618 | None:intergenic | 45.0% | |
| ! | ATTCTTGACACCGATTGCGA+CGG | - | chr8.3:6393552-6393571 | MS.gene061261:CDS | 45.0% |
| ! | GCTATGATTAAGCTTGGTGG+TGG | - | chr8.3:6393879-6393898 | MS.gene061261:CDS | 45.0% |
| !! | CTTGGTGGTGGTGATCAAAA+CGG | - | chr8.3:6393891-6393910 | MS.gene061261:CDS | 45.0% |
| !!! | GCTTATTTTGCCGTCGCAAT+CGG | + | chr8.3:6393565-6393584 | None:intergenic | 45.0% |
| AAAGAGACCGTTGGGATGTG+GGG | - | chr8.3:6393740-6393759 | MS.gene061261:CDS | 50.0% | |
| AAGTCGGTTGTGCTAGGTTG+TGG | + | chr8.3:6393516-6393535 | None:intergenic | 50.0% | |
| AGTCGGTTGTGCTAGGTTGT+GGG | + | chr8.3:6393515-6393534 | None:intergenic | 50.0% | |
| CAAGAATGTCGAATGCCGGT+CGG | + | chr8.3:6393539-6393558 | None:intergenic | 50.0% | |
| CTCCACGAATCCATCCTTGT+TGG | + | chr8.3:6393679-6393698 | None:intergenic | 50.0% | |
| GAAAAGAGACCGTTGGGATG+TGG | - | chr8.3:6393738-6393757 | MS.gene061261:CDS | 50.0% | |
| GGCCATGGAAGATGTGTTCA+AGG | - | chr8.3:6393761-6393780 | MS.gene061261:CDS | 50.0% | |
| TCATTCTACGCCACAGTCAC+AGG | - | chr8.3:6393600-6393619 | MS.gene061261:CDS | 50.0% | |
| TGGAGTACGAGGAATTCGAG+CGG | - | chr8.3:6393694-6393713 | MS.gene061261:CDS | 50.0% | |
| ! | CACCAACAAGGATGGATTCG+TGG | - | chr8.3:6393674-6393693 | MS.gene061261:CDS | 50.0% |
| !! | TGCAATCGGTGCCATGATGT+CGG | - | chr8.3:6393644-6393663 | MS.gene061261:CDS | 50.0% |
| ACAGTCACAGGTGGCGTGAA+TGG | - | chr8.3:6393612-6393631 | MS.gene061261:CDS | 55.0% | |
| ATTCACGCCACCTGTGACTG+TGG | + | chr8.3:6393613-6393632 | None:intergenic | 55.0% | |
| CGGGTGGTTAGCGGAAACAA+TGG | - | chr8.3:6393714-6393733 | MS.gene061261:CDS | 55.0% | |
| CTGTGGCGTAGAATGAACGG+AGG | + | chr8.3:6393596-6393615 | None:intergenic | 55.0% | |
| GAATTCGAGCGGGTGGTTAG+CGG | - | chr8.3:6393705-6393724 | MS.gene061261:CDS | 55.0% | |
| GGAGTACGAGGAATTCGAGC+GGG | - | chr8.3:6393695-6393714 | MS.gene061261:CDS | 55.0% | |
| TTCTACGCCACAGTCACAGG+TGG | - | chr8.3:6393603-6393622 | MS.gene061261:CDS | 55.0% | |
| ! | AACGGTGGCGTTAGCTTCGA+TGG | - | chr8.3:6393909-6393928 | MS.gene061261:CDS | 55.0% |
| ! | GGATGGATTCGTGGAGTACG+AGG | - | chr8.3:6393683-6393702 | MS.gene061261:CDS | 55.0% |
| ! | GGTGGTGGTGATCAAAACGG+TGG | - | chr8.3:6393894-6393913 | MS.gene061261:CDS | 55.0% |
| ! | TAGCACAACCGACTTCCGAC+CGG | - | chr8.3:6393521-6393540 | MS.gene061261:CDS | 55.0% |
| !! | AATCGGTGCCATGATGTCGG+TGG | - | chr8.3:6393647-6393666 | MS.gene061261:CDS | 55.0% |
| CGGTTGTGCTAGGTTGTGGG+CGG | + | chr8.3:6393512-6393531 | None:intergenic | 60.0% | |
| GGTCGGAAGTCGGTTGTGCT+AGG | + | chr8.3:6393522-6393541 | None:intergenic | 60.0% | |
| GTACGAGGAATTCGAGCGGG+TGG | - | chr8.3:6393698-6393717 | MS.gene061261:CDS | 60.0% | |
| GTCACAGGTGGCGTGAATGG+AGG | - | chr8.3:6393615-6393634 | MS.gene061261:CDS | 60.0% | |
| GTCGAATGCCGGTCGGAAGT+CGG | + | chr8.3:6393532-6393551 | None:intergenic | 60.0% | |
| TAGGTTGTGGGCGGAGGCTA+CGG | + | chr8.3:6393503-6393522 | None:intergenic | 60.0% | |
| TCCATGGCCCCACATCCCAA+CGG | + | chr8.3:6393750-6393769 | None:intergenic | 60.0% | |
| TTGTGCTAGGTTGTGGGCGG+AGG | + | chr8.3:6393509-6393528 | None:intergenic | 60.0% | |
| !! | GTGGCGGACACCAACAAGGA+TGG | - | chr8.3:6393666-6393685 | MS.gene061261:CDS | 60.0% |
| ACCGTTGGGATGTGGGGCCA+TGG | - | chr8.3:6393746-6393765 | MS.gene061261:CDS | 65.0% | |
| GGTGTCCGCCACCGACATCA+TGG | + | chr8.3:6393658-6393677 | None:intergenic | 65.0% | |
| !! | CGGTGCCATGATGTCGGTGG+CGG | - | chr8.3:6393650-6393669 | MS.gene061261:CDS | 65.0% |
| !! | GTCGGTGGCGGACACCAACA+AGG | - | chr8.3:6393662-6393681 | MS.gene061261:CDS | 65.0% |
| GGGCGGAGGCTACGGCCAGA+TGG | + | chr8.3:6393495-6393514 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 6393486 | 6393977 | 6393486 | ID=MS.gene061261 |
| chr8.3 | mRNA | 6393486 | 6393977 | 6393486 | ID=MS.gene061261.t1;Parent=MS.gene061261 |
| chr8.3 | exon | 6393486 | 6393977 | 6393486 | ID=MS.gene061261.t1.exon1;Parent=MS.gene061261.t1 |
| chr8.3 | CDS | 6393486 | 6393977 | 6393486 | ID=cds.MS.gene061261.t1;Parent=MS.gene061261.t1 |
| Gene Sequence |
| Protein sequence |