AlfalfaGEDB | MS.gene025777

M. sativa cultivar XinJiangDaYe / MS.gene025777

KEGG: K13448
GO: GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872
PFAM: PF00036.35 PF13499.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene025777.t1	XP_003611244.1	99.3	147	1	0	1	147	1	147	1.60E-75	292

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene025777.t1	Q94AZ4	87.8	148	17	1	1	147	1	148	4.2e-69	261.9

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene025777.t1	B7FNA2	99.3	147	1	0	1	147	1	147	1.1e-75	292.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene025777	MS.gene057167	PPI
MS.gene025777	MS.gene93763	PPI
MS.gene025777	MS.gene49270	PPI
MS.gene05284	MS.gene025777	PPI
MS.gene025777	MS.gene026940	PPI
MS.gene041795	MS.gene025777	PPI
MS.gene63000	MS.gene025777	PPI
MS.gene025777	MS.gene29794	PPI
MS.gene025777	MS.gene71511	PPI
MS.gene68345	MS.gene025777	PPI
MS.gene025777	MS.gene033361	PPI
MS.gene025777	MS.gene87673	PPI
MS.gene025777	MS.gene53659	PPI
MS.gene025777	MS.gene09960	PPI
MS.gene040127	MS.gene025777	PPI
MS.gene62258	MS.gene025777	PPI
MS.gene025777	MS.gene061768	PPI
MS.gene025777	MS.gene89216	PPI
MS.gene025777	MS.gene64308	PPI
MS.gene025777	MS.gene009021	PPI
MS.gene025777	MS.gene47195	PPI
MS.gene038456	MS.gene025777	PPI
MS.gene000724	MS.gene025777	PPI
MS.gene025777	MS.gene47134	PPI
MS.gene025777	MS.gene017446	PPI
MS.gene025777	MS.gene96914	PPI
MS.gene64311	MS.gene025777	PPI
MS.gene025777	MS.gene96913	PPI
MS.gene025777	MS.gene07422	PPI
MS.gene025777	MS.gene061261	PPI
MS.gene58860	MS.gene025777	PPI
MS.gene27516	MS.gene025777	PPI
MS.gene053319	MS.gene025777	PPI
MS.gene04915	MS.gene025777	PPI
MS.gene61009	MS.gene025777	PPI
MS.gene64327	MS.gene025777	PPI
MS.gene074100	MS.gene025777	PPI
MS.gene64307	MS.gene025777	PPI
MS.gene025777	MS.gene026618	PPI
MS.gene04917	MS.gene025777	PPI
MS.gene025777	MS.gene53648	PPI
MS.gene025777	MS.gene008831	PPI
MS.gene025777	MS.gene55545	PPI
MS.gene025777	MS.gene056461	PPI
MS.gene036930	MS.gene025777	PPI
MS.gene025777	MS.gene29459	PPI
MS.gene001246	MS.gene025777	PPI
MS.gene013748	MS.gene025777	PPI
MS.gene025777	MS.gene35562	PPI
MS.gene025777	MS.gene92775	PPI
MS.gene025777	MS.gene63281	PPI
MS.gene025777	MS.gene060446	PPI
MS.gene025777	MS.gene013748	PPI
MS.gene011400	MS.gene025777	PPI
MS.gene040331	MS.gene025777	PPI
MS.gene025777	MS.gene21696	PPI
MS.gene025777	MS.gene64316	PPI
MS.gene024717	MS.gene025777	PPI
MS.gene025777	MS.gene29793	PPI
MS.gene025777	MS.gene98294	PPI
MS.gene025777	MS.gene074045	PPI
MS.gene025777	MS.gene03228	PPI
MS.gene64313	MS.gene025777	PPI
MS.gene97948	MS.gene025777	PPI
MS.gene55496	MS.gene025777	PPI
MS.gene003880	MS.gene025777	PPI
MS.gene54637	MS.gene025777	PPI
MS.gene025777	MS.gene46237	PPI
MS.gene000738	MS.gene025777	PPI
MS.gene49271	MS.gene025777	PPI
MS.gene025777	MS.gene64317	PPI
MS.gene67281	MS.gene025777	PPI
MS.gene062239	MS.gene025777	PPI
MS.gene46886	MS.gene025777	PPI
MS.gene025777	MS.gene63000	PPI
MS.gene025777	MS.gene93087	PPI
MS.gene025777	MS.gene64310	PPI
MS.gene025777	MS.gene046988	PPI
MS.gene025777	MS.gene057293	PPI
MS.gene025777	MS.gene71207	PPI
MS.gene025777	MS.gene74452	PPI
MS.gene025777	MS.gene09934	PPI
MS.gene21932	MS.gene025777	PPI
MS.gene28338	MS.gene025777	PPI
MS.gene025777	MS.gene58906	PPI
MS.gene025777	MS.gene79028	PPI
MS.gene008225	MS.gene025777	PPI
MS.gene056383	MS.gene025777	PPI
MS.gene64324	MS.gene025777	PPI
MS.gene022455	MS.gene025777	PPI
MS.gene015470	MS.gene025777	PPI
MS.gene025777	MS.gene65954	PPI
MS.gene025777	MS.gene98295	PPI
MS.gene025777	MS.gene022456	PPI
MS.gene22553	MS.gene025777	PPI
MS.gene53662	MS.gene025777	PPI
MS.gene025777	MS.gene85596	PPI
MS.gene025777	MS.gene96922	PPI
MS.gene35563	MS.gene025777	PPI
MS.gene025777	MS.gene025797	PPI
MS.gene025777	MS.gene21931	PPI
MS.gene025777	MS.gene64314	PPI
MS.gene025777	MS.gene94551	PPI
MS.gene025777	MS.gene62540	PPI
MS.gene21155	MS.gene025777	PPI
MS.gene025777	MS.gene53650	PPI
MS.gene004899	MS.gene025777	PPI
MS.gene025777	MS.gene02545	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene025777.t1	MTR_5g011850	99.320	147	1	0	1	147	1	147	2.52e-105	297
MS.gene025777.t1	MTR_6g025320	51.007	149	71	1	1	147	1	149	4.04e-49	155
MS.gene025777.t1	MTR_7g087610	50.336	149	72	1	1	147	1	149	1.22e-48	154
MS.gene025777.t1	MTR_5g088320	50.336	149	72	1	1	147	1	149	1.95e-48	153
MS.gene025777.t1	MTR_1g041285	42.568	148	83	1	1	146	1	148	4.15e-40	132
MS.gene025777.t1	MTR_1g076650	40.541	148	86	1	1	146	1	148	7.85e-38	126
MS.gene025777.t1	MTR_0168s0120	48.673	113	56	1	37	147	1	113	8.70e-34	115
MS.gene025777.t1	MTR_6g025320	48.673	113	56	1	37	147	1	113	8.70e-34	115
MS.gene025777.t1	MTR_1g071150	36.054	147	91	2	1	145	1	146	5.92e-30	106
MS.gene025777.t1	MTR_8g066630	36.170	141	85	3	5	140	10	150	4.85e-25	94.4
MS.gene025777.t1	MTR_7g115040	36.486	148	92	1	1	146	1	148	1.48e-24	92.4
MS.gene025777.t1	MTR_1g032070	33.824	136	88	1	13	146	47	182	4.84e-20	82.0
MS.gene025777.t1	MTR_3g055570	37.931	145	69	3	1	141	41	168	4.46e-19	79.3
MS.gene025777.t1	MTR_8g105230	33.846	130	84	1	13	140	37	166	5.39e-19	79.3
MS.gene025777.t1	MTR_7g074020	30.282	142	97	1	5	144	23	164	5.63e-19	79.0
MS.gene025777.t1	MTR_4g112460	31.915	141	92	2	8	144	7	147	1.21e-18	77.8
MS.gene025777.t1	MTR_6g007613	31.343	134	90	1	13	144	30	163	3.03e-18	77.0
MS.gene025777.t1	MTR_7g106710	29.452	146	98	3	1	144	429	571	4.76e-18	80.1
MS.gene025777.t1	MTR_4g107490	32.192	146	96	2	1	144	367	511	5.79e-18	79.7
MS.gene025777.t1	MTR_1g096490	30.986	142	93	3	5	144	328	466	8.89e-18	79.0
MS.gene025777.t1	MTR_5g079340	33.566	143	85	4	7	145	2	138	1.36e-17	74.3
MS.gene025777.t1	MTR_1g055255	30.822	146	96	3	1	144	418	560	3.22e-17	77.4
MS.gene025777.t1	MTR_7g074020	30.233	129	88	1	5	131	23	151	9.06e-17	72.8
MS.gene025777.t1	MTR_8g107110	33.333	135	85	2	13	144	25	157	1.40e-16	72.4
MS.gene025777.t1	MTR_6g007613	30.233	129	88	1	5	131	22	150	5.03e-16	70.9
MS.gene025777.t1	MTR_8g069915	29.452	146	98	3	6	147	6	150	1.16e-15	70.1
MS.gene025777.t1	MTR_1g046950	30.657	137	91	2	13	145	5	141	1.91e-15	68.9
MS.gene025777.t1	MTR_7g068710	30.986	142	95	2	5	144	354	494	2.58e-15	72.0
MS.gene025777.t1	MTR_5g027000	28.889	135	94	1	8	140	18	152	2.69e-15	68.9
MS.gene025777.t1	MTR_6g079570	32.624	141	85	4	13	147	27	163	3.24e-15	68.9
MS.gene025777.t1	MTR_3g051770	32.237	152	94	3	1	144	377	527	4.24e-15	71.2
MS.gene025777.t1	MTR_1g047100	29.371	143	95	3	7	146	2	141	5.14e-15	67.8
MS.gene025777.t1	MTR_1g054865	29.452	146	98	3	1	144	455	597	7.31e-15	70.9
MS.gene025777.t1	MTR_1g041150	27.397	146	101	3	1	144	412	554	8.89e-15	70.5
MS.gene025777.t1	MTR_3g098070	28.169	142	97	3	5	144	327	465	1.49e-14	69.7
MS.gene025777.t1	MTR_4g132070	32.653	147	93	4	1	144	385	528	1.58e-14	69.7
MS.gene025777.t1	MTR_8g095440	28.873	142	96	3	5	144	328	466	1.78e-14	69.7
MS.gene025777.t1	MTR_3g098090	27.397	146	101	3	1	144	326	468	2.09e-14	69.3
MS.gene025777.t1	MTR_3g055520	34.752	141	79	3	1	141	41	168	2.13e-14	67.0
MS.gene025777.t1	MTR_5g099240	28.082	146	100	3	1	144	390	532	2.48e-14	69.3
MS.gene025777.t1	MTR_5g099240	28.082	146	100	3	1	144	318	460	2.68e-14	68.9
MS.gene025777.t1	MTR_5g092810	31.507	146	96	3	1	144	386	529	3.20e-14	68.9
MS.gene025777.t1	MTR_1g026190	30.822	146	97	3	1	144	376	519	4.47e-14	68.6
MS.gene025777.t1	MTR_3g067610	29.104	134	89	2	13	144	6	135	5.00e-14	65.1
MS.gene025777.t1	MTR_4g067270	30.435	138	92	2	11	144	4	141	1.46e-13	64.3
MS.gene025777.t1	MTR_1g052530	29.167	144	99	2	5	146	350	492	1.79e-13	66.6
MS.gene025777.t1	MTR_3g055585	33.333	141	81	3	1	141	41	168	6.47e-13	63.2
MS.gene025777.t1	MTR_5g009830	30.137	146	98	3	1	144	360	503	6.82e-13	65.1
MS.gene025777.t1	MTR_7g091890	29.054	148	102	2	1	146	352	498	9.62e-13	64.7
MS.gene025777.t1	MTR_7g075040	31.973	147	85	4	11	144	46	190	1.12e-12	62.8
MS.gene025777.t1	MTR_7g106710	27.692	130	89	3	1	128	429	555	1.30e-12	64.3
MS.gene025777.t1	MTR_8g036075	30.405	148	93	3	7	144	44	191	2.82e-12	61.6
MS.gene025777.t1	MTR_5g089320	28.873	142	97	3	5	144	366	505	2.99e-12	63.2
MS.gene025777.t1	MTR_0028s0170	30.282	142	95	3	5	144	376	515	3.00e-12	63.2
MS.gene025777.t1	MTR_8g099095	28.767	146	100	3	1	144	360	503	5.64e-12	62.4
MS.gene025777.t1	MTR_3g083470	31.538	130	81	2	11	140	92	213	5.86e-12	61.2
MS.gene025777.t1	MTR_4g103650	31.538	130	80	4	16	140	6	131	1.10e-11	58.9
MS.gene025777.t1	MTR_4g103655	31.538	130	80	4	16	140	10	135	1.52e-11	58.5
MS.gene025777.t1	MTR_3g055490	44.000	75	40	1	1	73	41	115	2.52e-11	57.4
MS.gene025777.t1	MTR_5g008705	26.923	130	93	1	19	146	1	130	3.39e-11	57.4
MS.gene025777.t1	MTR_4g115170	30.719	153	85	4	13	145	65	216	4.34e-11	58.9
MS.gene025777.t1	MTR_4g132040	29.452	146	98	4	1	144	390	532	7.46e-11	59.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene025777.t1	AT1G12310	87.838	148	17	1	1	147	1	148	5.46e-93	266
MS.gene025777.t1	AT1G62820	83.784	148	23	1	1	147	1	148	8.88e-90	258
MS.gene025777.t1	AT5G21274	51.007	149	71	1	1	147	1	149	4.18e-49	155
MS.gene025777.t1	AT3G43810	51.007	149	71	1	1	147	1	149	4.23e-49	155
MS.gene025777.t1	AT3G56800	50.336	149	72	1	1	147	1	149	1.45e-48	153
MS.gene025777.t1	AT2G27030	50.336	149	72	1	1	147	1	149	1.45e-48	153
MS.gene025777.t1	AT2G41110	50.336	149	72	1	1	147	1	149	1.45e-48	153
MS.gene025777.t1	AT2G27030	50.336	149	72	1	1	147	1	149	3.66e-48	153
MS.gene025777.t1	AT5G37780	50.336	149	72	1	1	147	1	149	4.01e-48	152
MS.gene025777.t1	AT1G66410	50.336	149	72	1	1	147	1	149	4.01e-48	152
MS.gene025777.t1	AT3G43810	50.336	149	72	1	1	147	1	149	3.51e-47	152
MS.gene025777.t1	AT2G41110	46.584	161	72	2	1	147	1	161	6.70e-45	144
MS.gene025777.t1	AT5G37780	45.732	164	72	2	1	147	1	164	6.72e-44	142
MS.gene025777.t1	AT5G37780	42.857	175	72	2	1	147	1	175	6.60e-42	137
MS.gene025777.t1	AT1G66410	47.170	159	72	2	1	147	1	159	9.52e-42	136
MS.gene025777.t1	AT3G22930	40.972	144	83	1	4	145	27	170	2.36e-38	128
MS.gene025777.t1	AT4G14640	40.559	143	83	1	5	145	6	148	3.43e-38	127
MS.gene025777.t1	AT5G37780	48.387	124	62	1	26	147	13	136	8.87e-37	123
MS.gene025777.t1	AT3G43810	48.673	113	56	1	37	147	1	113	9.11e-34	115
MS.gene025777.t1	AT3G43810	48.673	113	56	1	37	147	1	113	9.11e-34	115
MS.gene025777.t1	AT1G66410	48.673	113	56	1	37	147	1	113	1.96e-33	114
MS.gene025777.t1	AT1G66410	48.673	113	56	1	37	147	1	113	1.96e-33	114
MS.gene025777.t1	AT2G41100	38.554	166	83	3	1	147	55	220	1.43e-28	106
MS.gene025777.t1	AT2G41100	29.688	128	72	3	36	145	1	128	7.10e-12	61.6
MS.gene025777.t1	AT2G41100	38.554	166	83	3	1	147	55	220	1.43e-28	106
MS.gene025777.t1	AT2G41100	29.688	128	72	3	36	145	1	128	7.10e-12	61.6
MS.gene025777.t1	AT2G41100	38.554	166	83	3	1	147	55	220	1.43e-28	106
MS.gene025777.t1	AT2G41100	29.688	128	72	3	36	145	1	128	7.10e-12	61.6
MS.gene025777.t1	AT2G41100	38.554	166	83	3	1	147	90	255	2.56e-28	106
MS.gene025777.t1	AT2G41100	33.742	163	90	3	1	145	1	163	4.64e-24	95.1
MS.gene025777.t1	AT2G41100	38.554	166	83	3	1	147	90	255	2.56e-28	106
MS.gene025777.t1	AT2G41100	33.742	163	90	3	1	145	1	163	4.64e-24	95.1
MS.gene025777.t1	AT4G14640	36.885	122	75	1	26	145	9	130	4.22e-28	101
MS.gene025777.t1	AT2G41090	36.242	149	90	2	1	147	1	146	3.36e-25	95.5
MS.gene025777.t1	AT4G14640	42.718	103	57	1	5	105	6	108	1.13e-24	92.0
MS.gene025777.t1	AT3G22930	40.777	103	59	1	4	104	27	129	1.02e-22	87.4
MS.gene025777.t1	AT3G51920	31.081	148	100	1	1	146	1	148	8.07e-21	83.2
MS.gene025777.t1	AT1G32250	31.081	148	94	3	1	140	5	152	1.49e-20	82.8
MS.gene025777.t1	AT3G50360	30.282	142	97	1	5	144	20	161	1.11e-19	80.5
MS.gene025777.t1	AT4G37010	31.690	142	95	1	5	144	20	161	2.87e-19	79.3
MS.gene025777.t1	AT4G37010	31.690	142	95	1	5	144	24	165	3.14e-19	79.3
MS.gene025777.t1	AT1G24620	33.813	139	90	1	9	145	34	172	1.15e-18	78.6
MS.gene025777.t1	AT1G76040	32.877	146	94	3	1	144	167	310	4.75e-18	79.0
MS.gene025777.t1	AT1G76040	32.877	146	94	3	1	144	167	310	4.75e-18	79.0
MS.gene025777.t1	AT3G03000	33.103	145	94	2	5	146	13	157	7.06e-18	75.9
MS.gene025777.t1	AT1G76040	32.877	146	94	3	1	144	405	548	8.87e-18	79.3
MS.gene025777.t1	AT2G41100	36.923	130	63	3	37	147	1	130	1.17e-17	75.9
MS.gene025777.t1	AT1G18530	33.103	145	92	3	7	147	2	145	1.60e-17	74.7
MS.gene025777.t1	AT1G74740	34.228	149	93	4	1	146	353	499	2.04e-17	78.2
MS.gene025777.t1	AT1G35670	32.394	142	91	3	5	144	324	462	2.73e-17	77.8
MS.gene025777.t1	AT4G09570	31.690	142	92	3	5	144	323	461	9.11e-17	76.3
MS.gene025777.t1	AT1G66400	31.579	152	97	3	1	145	1	152	1.78e-16	72.0
MS.gene025777.t1	AT5G23580	29.452	146	98	3	1	144	316	458	1.24e-15	73.2
MS.gene025777.t1	AT4G38230	28.767	146	99	3	1	144	174	316	1.34e-15	72.4
MS.gene025777.t1	AT4G38230	28.767	146	99	3	1	144	318	460	1.36e-15	72.8
MS.gene025777.t1	AT4G38230	28.767	146	99	3	1	144	318	460	1.36e-15	72.8
MS.gene025777.t1	AT4G38230	28.767	146	99	3	1	144	348	490	1.49e-15	72.8
MS.gene025777.t1	AT4G21940	32.192	146	95	3	1	144	395	538	6.84e-15	70.9
MS.gene025777.t1	AT4G21940	32.192	146	95	3	1	144	395	538	7.55e-15	70.9
MS.gene025777.t1	AT2G17290	28.082	146	100	3	1	144	379	521	7.88e-15	70.9
MS.gene025777.t1	AT2G17290	28.082	146	100	3	1	144	379	521	7.88e-15	70.9
MS.gene025777.t1	AT3G10660	28.767	146	99	3	1	144	480	622	8.85e-15	70.5
MS.gene025777.t1	AT3G10660	28.767	146	99	3	1	144	480	622	8.85e-15	70.5
MS.gene025777.t1	AT1G18210	29.323	133	92	1	13	145	24	154	1.58e-14	67.4
MS.gene025777.t1	AT1G18210	29.323	133	92	1	13	145	24	154	1.58e-14	67.4
MS.gene025777.t1	AT4G35310	28.767	146	99	3	1	144	391	533	2.20e-14	69.3
MS.gene025777.t1	AT4G35310	28.767	146	99	3	1	144	391	533	2.20e-14	69.3
MS.gene025777.t1	AT5G04870	27.397	146	101	3	1	144	444	586	4.23e-14	68.6
MS.gene025777.t1	AT3G57530	31.333	150	91	4	1	144	357	500	5.91e-14	68.2
MS.gene025777.t1	AT2G38910	28.767	146	99	3	1	144	428	570	1.53e-13	67.0
MS.gene025777.t1	AT3G20410	29.452	146	99	3	1	144	385	528	1.80e-13	67.0
MS.gene025777.t1	AT3G20410	29.452	146	99	3	1	144	385	528	1.80e-13	67.0
MS.gene025777.t1	AT2G41860	30.137	146	99	2	1	144	348	492	2.05e-13	66.6
MS.gene025777.t1	AT2G41860	30.137	146	99	2	1	144	348	492	2.15e-13	66.6
MS.gene025777.t1	AT1G05990	30.216	139	92	3	11	144	4	142	2.19e-13	63.9
MS.gene025777.t1	AT4G23650	29.452	146	99	3	1	144	372	515	4.56e-13	65.5
MS.gene025777.t1	AT2G43290	29.861	144	90	4	11	144	64	206	4.78e-13	64.3
MS.gene025777.t1	AT3G25600	29.167	144	97	3	8	147	8	150	6.31e-13	62.8
MS.gene025777.t1	AT2G15680	27.465	142	99	2	5	144	43	182	6.54e-13	63.2
MS.gene025777.t1	AT3G59440	31.884	138	85	4	13	144	52	186	9.12e-13	63.2
MS.gene025777.t1	AT4G03290	29.927	137	89	3	11	140	4	140	1.71e-12	61.6
MS.gene025777.t1	AT5G19360	30.282	142	95	3	5	144	366	505	1.81e-12	63.9
MS.gene025777.t1	AT1G73630	26.866	134	92	2	13	144	21	150	2.71e-12	61.2
MS.gene025777.t1	AT1G18890	28.859	149	101	4	1	146	357	503	2.76e-12	63.5
MS.gene025777.t1	AT5G12480	28.289	152	99	4	1	146	353	500	3.21e-12	63.2
MS.gene025777.t1	AT5G12480	28.289	152	99	4	1	146	259	406	3.94e-12	62.8
MS.gene025777.t1	AT1G50700	28.082	146	101	3	1	144	367	510	4.18e-12	62.8
MS.gene025777.t1	AT4G04720	29.452	146	99	3	1	144	373	516	9.43e-12	62.0
MS.gene025777.t1	AT4G04720	29.452	146	99	3	1	144	373	516	9.43e-12	62.0
MS.gene025777.t1	AT3G03400	29.231	130	88	3	12	137	5	134	1.30e-11	58.9
MS.gene025777.t1	AT3G51850	28.873	142	98	2	5	144	352	492	1.92e-11	60.8
MS.gene025777.t1	AT5G12180	28.873	142	97	3	5	144	371	510	2.91e-11	60.5
MS.gene025777.t1	AT2G41100	36.923	65	41	0	83	147	12	76	4.48e-11	57.8
MS.gene025777.t1	AT4G12860	28.986	138	90	3	13	144	6	141	5.38e-11	57.4
MS.gene025777.t1	AT5G37770	26.087	138	96	2	13	144	18	155	6.63e-11	57.4
MS.gene025777.t1	AT5G37770	26.087	138	96	2	13	144	18	155	6.63e-11	57.4

Find 37 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGTTGACGATCGAACGGTTC+AGG	0.312022	5.3:-5235548	None:intergenic
CGATGGATTTGAGTTGGGCT+TGG	0.312614	5.3:-5235454	None:intergenic
CGGTTCAGGTTTCATGTGTT+TGG	0.324663	5.3:-5235534	None:intergenic
CTGAGTTTGATGAATGGATT+AGG	0.334899	5.3:+5235672	MS.gene025777:CDS
CGGCGACGATGGATTTGAGT+TGG	0.406400	5.3:-5235460	None:intergenic
TGCGATCTTGCCGTCGTTGT+CGG	0.415377	5.3:-5235384	None:intergenic
ATTTGAGTTGGGCTTGGGTC+GGG	0.416027	5.3:-5235448	None:intergenic
GATGGATTTGAGTTGGGCTT+GGG	0.428812	5.3:-5235453	None:intergenic
GATTTGAGTTGGGCTTGGGT+CGG	0.446248	5.3:-5235449	None:intergenic
GGCGACGATGGATTTGAGTT+GGG	0.459012	5.3:-5235459	None:intergenic
AACCGTTCGATCGTCAACTA+AGG	0.463624	5.3:+5235552	MS.gene025777:CDS
GTTCTCGATAAAGATGCTAC+TGG	0.465422	5.3:+5235587	MS.gene025777:CDS
GGATTAGGGAAGTTGATGTT+GGG	0.471509	5.3:+5235687	MS.gene025777:CDS
AGCCTGCTGAGTTTGATGAA+TGG	0.478011	5.3:+5235666	MS.gene025777:CDS
GAAGTTGATGTTGGGTCTGA+TGG	0.478332	5.3:+5235695	MS.gene025777:CDS
TGAGTTTGATGAATGGATTA+GGG	0.481850	5.3:+5235673	MS.gene025777:CDS
GGAATCCTCATGCGTTCTCT+CGG	0.492944	5.3:+5235419	MS.gene025777:CDS
TGGATTAGGGAAGTTGATGT+TGG	0.508553	5.3:+5235686	MS.gene025777:CDS
AGGGGAGGTTAGATTCTCTT+CGG	0.513129	5.3:-5235480	None:intergenic
ATCCATTCATCAAACTCAGC+AGG	0.514616	5.3:-5235668	None:intergenic
TGAAGATTTCATCGCAAGAA+TGG	0.518278	5.3:+5235730	MS.gene025777:CDS
TAGATTCTCTTCGGCGACGA+TGG	0.518627	5.3:-5235471	None:intergenic
AAATCAAACGAAAATGGGTA+AGG	0.546646	5.3:+5235307	None:intergenic
AAGTTGATGTTGGGTCTGAT+GGG	0.550763	5.3:+5235696	MS.gene025777:CDS
TTTCAGGATCCATCTTCACT+TGG	0.550955	5.3:-5235756	None:intergenic
CGACGGCAAGATCGCACCAT+CGG	0.559292	5.3:+5235391	MS.gene025777:CDS
ATCCTCATGCGTTCTCTCGG+TGG	0.560666	5.3:+5235422	MS.gene025777:CDS
GAAATCGAGAGAAATCGAAA+GGG	0.564111	5.3:-5235499	None:intergenic
AAGATCGCACCATCGGAGCT+CGG	0.573545	5.3:+5235398	MS.gene025777:CDS
AGAAATCGAGAGAAATCGAA+AGG	0.584540	5.3:-5235500	None:intergenic
ATGAGGATTCCGAGCTCCGA+TGG	0.601818	5.3:-5235407	None:intergenic
ACCGTTCGATCGTCAACTAA+GGG	0.604940	5.3:+5235553	MS.gene025777:CDS
TCCCTTAGTTGACGATCGAA+CGG	0.606994	5.3:-5235554	None:intergenic
CTCTTCGACACCGACAACGA+CGG	0.661849	5.3:+5235374	MS.gene025777:CDS
TACCACCGAGAGAACGCATG+AGG	0.667940	5.3:-5235424	None:intergenic
TCGAGAGAAATCGAAAGGGG+AGG	0.668937	5.3:-5235495	None:intergenic
AAATCGAGAGAAATCGAAAG+GGG	0.678072	5.3:-5235498	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TGAGTTTGATGAATGGATTA+GGG	+	chr5.3:5235673-5235692	MS.gene025777:CDS	30.0%
!!!	CGTCATATTTTGACTAGTAT+TGG	+	chr5.3:5235632-5235651	MS.gene025777:CDS	30.0%
	AAATCGAGAGAAATCGAAAG+GGG	-	chr5.3:5235501-5235520	None:intergenic	35.0%
	AGAAATCGAGAGAAATCGAA+AGG	-	chr5.3:5235503-5235522	None:intergenic	35.0%
	GAAATCGAGAGAAATCGAAA+GGG	-	chr5.3:5235502-5235521	None:intergenic	35.0%
	TGAAGATTTCATCGCAAGAA+TGG	+	chr5.3:5235730-5235749	MS.gene025777:CDS	35.0%
!	CTGAGTTTGATGAATGGATT+AGG	+	chr5.3:5235672-5235691	MS.gene025777:CDS	35.0%
	ATCCATTCATCAAACTCAGC+AGG	-	chr5.3:5235671-5235690	None:intergenic	40.0%
	GTTCTCGATAAAGATGCTAC+TGG	+	chr5.3:5235587-5235606	MS.gene025777:CDS	40.0%
!!	AAGTTGATGTTGGGTCTGAT+GGG	+	chr5.3:5235696-5235715	MS.gene025777:CDS	40.0%
!!	GGATTAGGGAAGTTGATGTT+GGG	+	chr5.3:5235687-5235706	MS.gene025777:CDS	40.0%
!!	TGGATTAGGGAAGTTGATGT+TGG	+	chr5.3:5235686-5235705	MS.gene025777:CDS	40.0%
	AACCGTTCGATCGTCAACTA+AGG	+	chr5.3:5235552-5235571	MS.gene025777:CDS	45.0%
	ACCGTTCGATCGTCAACTAA+GGG	+	chr5.3:5235553-5235572	MS.gene025777:CDS	45.0%
	AGCCTGCTGAGTTTGATGAA+TGG	+	chr5.3:5235666-5235685	MS.gene025777:CDS	45.0%
	AGGGGAGGTTAGATTCTCTT+CGG	-	chr5.3:5235483-5235502	None:intergenic	45.0%
	TCCCTTAGTTGACGATCGAA+CGG	-	chr5.3:5235557-5235576	None:intergenic	45.0%
!	CGGTTCAGGTTTCATGTGTT+TGG	-	chr5.3:5235537-5235556	None:intergenic	45.0%
!!	GAAGTTGATGTTGGGTCTGA+TGG	+	chr5.3:5235695-5235714	MS.gene025777:CDS	45.0%
!!	GATGGATTTGAGTTGGGCTT+GGG	-	chr5.3:5235456-5235475	None:intergenic	45.0%
	AGTTGACGATCGAACGGTTC+AGG	-	chr5.3:5235551-5235570	None:intergenic	50.0%
	GGAATCCTCATGCGTTCTCT+CGG	+	chr5.3:5235419-5235438	MS.gene025777:CDS	50.0%
	TAGATTCTCTTCGGCGACGA+TGG	-	chr5.3:5235474-5235493	None:intergenic	50.0%
	TCGAGAGAAATCGAAAGGGG+AGG	-	chr5.3:5235498-5235517	None:intergenic	50.0%
!	GGCGACGATGGATTTGAGTT+GGG	-	chr5.3:5235462-5235481	None:intergenic	50.0%
!!	ATTTGAGTTGGGCTTGGGTC+GGG	-	chr5.3:5235451-5235470	None:intergenic	50.0%
!!	CGATGGATTTGAGTTGGGCT+TGG	-	chr5.3:5235457-5235476	None:intergenic	50.0%
!!	GATTTGAGTTGGGCTTGGGT+CGG	-	chr5.3:5235452-5235471	None:intergenic	50.0%
	AAGATCGCACCATCGGAGCT+CGG	+	chr5.3:5235398-5235417	MS.gene025777:CDS	55.0%
	ATCCTCATGCGTTCTCTCGG+TGG	+	chr5.3:5235422-5235441	MS.gene025777:CDS	55.0%
	ATGAGGATTCCGAGCTCCGA+TGG	-	chr5.3:5235410-5235429	None:intergenic	55.0%
	CTCTTCGACACCGACAACGA+CGG	+	chr5.3:5235374-5235393	MS.gene025777:CDS	55.0%
	TACCACCGAGAGAACGCATG+AGG	-	chr5.3:5235427-5235446	None:intergenic	55.0%
	TGCGATCTTGCCGTCGTTGT+CGG	-	chr5.3:5235387-5235406	None:intergenic	55.0%
!	CGGCGACGATGGATTTGAGT+TGG	-	chr5.3:5235463-5235482	None:intergenic	55.0%
	CGACGGCAAGATCGCACCAT+CGG	+	chr5.3:5235391-5235410	MS.gene025777:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	5235320	5235763	5235320	ID=MS.gene025777
chr5.3	mRNA	5235320	5235763	5235320	ID=MS.gene025777.t1;Parent=MS.gene025777
chr5.3	exon	5235320	5235763	5235320	ID=MS.gene025777.t1.exon1;Parent=MS.gene025777.t1
chr5.3	CDS	5235320	5235763	5235320	ID=cds.MS.gene025777.t1;Parent=MS.gene025777.t1

Gene Sequence

>MS.gene025777

ATGGGTAAGGATCTGAGCGACGATCAAATCTCATCAATGAAAGAAGCATTCACACTCTTCGACACCGACAACGACGGCAAGATCGCACCATCGGAGCTCGGAATCCTCATGCGTTCTCTCGGTGGTAACCCGACCCAAGCCCAACTCAAATCCATCGTCGCCGAAGAGAATCTAACCTCCCCTTTCGATTTCTCTCGATTTCTCGATCTCATGTCCAAACACATGAAACCTGAACCGTTCGATCGTCAACTAAGGGATGCGTTCAAAGTTCTCGATAAAGATGCTACTGGATTTGTTTCTGTCAATGAGCTTCGTCATATTTTGACTAGTATTGGTGAGAAGCTTGAGCCTGCTGAGTTTGATGAATGGATTAGGGAAGTTGATGTTGGGTCTGATGGGAAGATTCGTTATGAAGATTTCATCGCAAGAATGGTCGCCAAGTGA

Protein sequence

>MS.gene025777.t1

MGKDLSDDQISSMKEAFTLFDTDNDGKIAPSELGILMRSLGGNPTQAQLKSIVAEENLTSPFDFSRFLDLMSKHMKPEPFDRQLRDAFKVLDKDATGFVSVNELRHILTSIGEKLEPAEFDEWIREVDVGSDGKIRYEDFIARMVAK