AlfalfaGEDB | MS.gene28338

M. sativa cultivar XinJiangDaYe / MS.gene28338

KEGG: K13448
GO: GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872
PFAM: PF13499.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28338.t1	XP_013456299.1	99.3	150	1	0	1	150	1	150	1.70E-77	298.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28338.t1	Q9SRR7	75.3	150	37	0	1	150	1	150	1.2e-58	227.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28338.t1	A0A072UWV9	99.3	150	1	0	1	150	1	150	1.2e-77	298.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene28338	MS.gene53659	PPI
MS.gene64324	MS.gene28338	PPI
MS.gene28338	MS.gene09960	PPI
MS.gene011400	MS.gene28338	PPI
MS.gene015470	MS.gene28338	PPI
MS.gene28338	MS.gene061768	PPI
MS.gene024717	MS.gene28338	PPI
MS.gene28338	MS.gene62540	PPI
MS.gene28338	MS.gene47134	PPI
MS.gene22553	MS.gene28338	PPI
MS.gene53662	MS.gene28338	PPI
MS.gene28338	MS.gene017446	PPI
MS.gene28338	MS.gene53650	PPI
MS.gene28338	MS.gene96914	PPI
MS.gene28338	MS.gene02545	PPI
MS.gene28338	MS.gene04915	PPI
MS.gene28338	MS.gene96913	PPI
MS.gene35563	MS.gene28338	PPI
MS.gene55496	MS.gene28338	PPI
MS.gene54637	MS.gene28338	PPI
MS.gene49271	MS.gene28338	PPI
MS.gene67281	MS.gene28338	PPI
MS.gene28338	MS.gene057167	PPI
MS.gene28338	MS.gene93763	PPI
MS.gene28338	MS.gene64313	PPI
MS.gene28338	MS.gene49270	PPI
MS.gene21155	MS.gene28338	PPI
MS.gene28338	MS.gene024717	PPI
MS.gene004899	MS.gene28338	PPI
MS.gene21932	MS.gene28338	PPI
MS.gene28338	MS.gene29794	PPI
MS.gene28338	MS.gene008831	PPI
MS.gene28338	MS.gene71511	PPI
MS.gene28338	MS.gene033361	PPI
MS.gene28338	MS.gene87673	PPI
MS.gene022455	MS.gene28338	PPI
MS.gene05284	MS.gene28338	PPI
MS.gene28338	MS.gene89216	PPI
MS.gene041795	MS.gene28338	PPI
MS.gene28338	MS.gene64308	PPI
MS.gene28338	MS.gene009021	PPI
MS.gene28338	MS.gene47195	PPI
MS.gene28338	MS.gene060446	PPI
MS.gene28338	MS.gene07422	PPI
MS.gene28338	MS.gene013748	PPI
MS.gene040127	MS.gene28338	PPI
MS.gene28338	MS.gene64316	PPI
MS.gene28338	MS.gene98294	PPI
MS.gene038456	MS.gene28338	PPI
MS.gene000724	MS.gene28338	PPI
MS.gene28338	MS.gene061261	PPI
MS.gene28338	MS.gene03228	PPI
MS.gene28338	MS.gene036930	PPI
MS.gene28338	MS.gene21932	PPI
MS.gene28338	MS.gene026618	PPI
MS.gene28338	MS.gene53648	PPI
MS.gene28338	MS.gene55545	PPI
MS.gene28338	MS.gene056461	PPI
MS.gene28338	MS.gene63000	PPI
MS.gene28338	MS.gene64310	PPI
MS.gene28338	MS.gene29459	PPI
MS.gene28338	MS.gene71207	PPI
MS.gene04915	MS.gene28338	PPI
MS.gene28338	MS.gene35562	PPI
MS.gene28338	MS.gene92775	PPI
MS.gene28338	MS.gene74452	PPI
MS.gene61009	MS.gene28338	PPI
MS.gene64327	MS.gene28338	PPI
MS.gene074100	MS.gene28338	PPI
MS.gene28338	MS.gene53662	PPI
MS.gene28338	MS.gene63281	PPI
MS.gene68345	MS.gene28338	PPI
MS.gene001246	MS.gene28338	PPI
MS.gene62258	MS.gene28338	PPI
MS.gene28338	MS.gene21696	PPI
MS.gene28338	MS.gene29793	PPI
MS.gene28338	MS.gene022456	PPI
MS.gene28338	MS.gene074045	PPI
MS.gene28338	MS.gene85596	PPI
MS.gene28338	MS.gene96922	PPI
MS.gene64311	MS.gene28338	PPI
MS.gene28338	MS.gene46237	PPI
MS.gene28338	MS.gene64317	PPI
MS.gene28338	MS.gene64314	PPI
MS.gene28338	MS.gene025777	PPI
MS.gene040331	MS.gene28338	PPI
MS.gene28338	MS.gene94551	PPI
MS.gene28338	MS.gene93087	PPI
MS.gene58860	MS.gene28338	PPI
MS.gene28338	MS.gene046988	PPI
MS.gene64313	MS.gene28338	PPI
MS.gene28338	MS.gene057293	PPI
MS.gene27516	MS.gene28338	PPI
MS.gene97948	MS.gene28338	PPI
MS.gene28338	MS.gene09934	PPI
MS.gene000738	MS.gene28338	PPI
MS.gene64307	MS.gene28338	PPI
MS.gene28338	MS.gene58906	PPI
MS.gene28338	MS.gene79028	PPI
MS.gene04917	MS.gene28338	PPI
MS.gene28338	MS.gene64311	PPI
MS.gene062239	MS.gene28338	PPI
MS.gene28338	MS.gene053319	PPI
MS.gene28338	MS.gene026940	PPI
MS.gene28338	MS.gene000724	PPI
MS.gene28338	MS.gene65954	PPI
MS.gene28338	MS.gene98295	PPI
MS.gene008225	MS.gene28338	PPI
MS.gene28338	MS.gene025797	PPI
MS.gene28338	MS.gene21931	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28338.t1	MTR_4g067270	99.333	150	1	0	1	150	1	150	9.78e-105	295
MS.gene28338.t1	MTR_2g098890	82.895	152	24	1	1	150	60	211	8.26e-80	235
MS.gene28338.t1	MTR_7g089760	78.378	148	32	0	1	148	1	148	2.27e-71	211
MS.gene28338.t1	MTR_4g115170	51.592	157	60	2	5	145	64	220	5.76e-45	147
MS.gene28338.t1	MTR_3g067610	42.553	141	75	2	1	141	1	135	4.50e-34	116
MS.gene28338.t1	MTR_3g067610	43.662	71	38	1	75	145	2	70	1.44e-12	61.2
MS.gene28338.t1	MTR_5g079340	43.478	138	75	2	4	141	3	137	7.01e-34	116
MS.gene28338.t1	MTR_7g087610	44.928	138	74	1	4	141	11	146	2.54e-33	115
MS.gene28338.t1	MTR_7g087610	44.118	68	36	1	74	141	8	73	6.96e-11	57.4
MS.gene28338.t1	MTR_1g046950	44.286	140	74	2	4	141	3	140	3.62e-33	114
MS.gene28338.t1	MTR_8g107110	45.714	140	73	2	2	141	21	157	4.21e-33	115
MS.gene28338.t1	MTR_5g088320	44.928	138	74	1	4	141	11	146	5.26e-33	114
MS.gene28338.t1	MTR_6g025320	44.928	138	74	1	4	141	11	146	5.68e-33	114
MS.gene28338.t1	MTR_6g025320	44.118	68	36	1	74	141	8	73	8.49e-11	57.0
MS.gene28338.t1	MTR_7g074240	41.176	153	80	2	6	148	25	177	5.25e-32	112
MS.gene28338.t1	MTR_1g032070	42.069	145	82	1	5	149	46	188	5.64e-32	113
MS.gene28338.t1	MTR_8g105230	44.286	140	76	1	5	144	36	173	4.29e-31	110
MS.gene28338.t1	MTR_7g075040	42.667	150	77	3	3	144	45	193	2.90e-30	108
MS.gene28338.t1	MTR_1g047100	41.007	139	79	2	4	141	3	139	4.90e-30	106
MS.gene28338.t1	MTR_1g041285	42.553	141	79	1	5	145	12	150	7.90e-30	106
MS.gene28338.t1	MTR_1g076650	41.606	137	78	1	5	141	12	146	6.34e-29	103
MS.gene28338.t1	MTR_6g079570	42.361	144	77	4	2	143	23	162	1.37e-28	103
MS.gene28338.t1	MTR_8g066630	36.986	146	87	3	4	146	16	159	2.32e-28	102
MS.gene28338.t1	MTR_6g023460	38.806	134	79	2	8	141	11	141	1.93e-26	97.4
MS.gene28338.t1	MTR_8g036075	40.136	147	80	3	5	144	49	194	7.82e-26	97.4
MS.gene28338.t1	MTR_4g103650	39.416	137	80	2	5	141	2	135	2.21e-25	94.4
MS.gene28338.t1	MTR_4g103655	38.686	137	81	2	5	141	6	139	1.35e-24	92.4
MS.gene28338.t1	MTR_7g090450	39.007	141	81	3	5	141	73	212	1.65e-24	94.4
MS.gene28338.t1	MTR_4g103630	37.681	138	83	2	5	142	6	140	2.31e-24	92.0
MS.gene28338.t1	MTR_5g017510	39.161	143	81	4	4	144	47	185	2.65e-24	93.2
MS.gene28338.t1	MTR_5g017560	39.161	143	81	4	4	144	47	185	2.65e-24	93.2
MS.gene28338.t1	MTR_0168s0120	43.750	112	61	1	30	141	1	110	4.77e-24	90.5
MS.gene28338.t1	MTR_6g025320	43.750	112	61	1	30	141	1	110	4.77e-24	90.5
MS.gene28338.t1	MTR_5g017550	37.589	141	85	2	4	144	47	184	1.18e-23	91.3
MS.gene28338.t1	MTR_3g089090	37.143	140	79	3	6	142	6	139	2.82e-23	89.0
MS.gene28338.t1	MTR_3g089070	37.143	140	79	3	6	142	7	140	3.09e-23	89.0
MS.gene28338.t1	MTR_4g086260	37.681	138	82	2	4	141	56	189	4.16e-23	90.1
MS.gene28338.t1	MTR_1g071150	38.686	137	81	2	5	141	12	145	1.98e-22	87.0
MS.gene28338.t1	MTR_5g008705	34.615	130	83	1	12	141	1	128	4.90e-22	85.5
MS.gene28338.t1	MTR_4g112460	34.211	152	90	3	4	150	10	156	1.00e-21	85.9
MS.gene28338.t1	MTR_5g089320	36.364	143	87	2	6	148	374	512	3.75e-21	89.0
MS.gene28338.t1	MTR_5g009830	35.971	139	85	2	6	144	372	506	8.68e-21	87.8
MS.gene28338.t1	MTR_7g074020	31.690	142	95	1	5	146	30	169	1.05e-20	83.2
MS.gene28338.t1	MTR_0028s0170	35.664	143	88	2	6	148	384	522	1.26e-20	87.4
MS.gene28338.t1	MTR_6g007613	32.394	142	94	1	5	146	29	168	1.43e-20	83.2
MS.gene28338.t1	MTR_1g030440	35.762	151	79	3	1	141	18	160	3.85e-20	81.6
MS.gene28338.t1	MTR_3g051770	35.417	144	86	3	6	144	389	530	1.67e-19	84.3
MS.gene28338.t1	MTR_1g026190	35.714	140	84	3	6	144	388	522	1.92e-19	84.0
MS.gene28338.t1	MTR_4g066660	35.915	142	83	4	6	145	378	513	1.94e-19	84.0
MS.gene28338.t1	MTR_5g092810	36.170	141	82	4	6	144	398	532	2.56e-19	83.6
MS.gene28338.t1	MTR_8g069915	31.788	151	93	3	5	150	12	157	3.28e-19	79.3
MS.gene28338.t1	MTR_4g132070	35.461	141	83	4	6	144	397	531	3.49e-19	83.2
MS.gene28338.t1	MTR_8g099095	35.971	139	85	2	6	144	372	506	4.16e-19	83.2
MS.gene28338.t1	MTR_3g088655	33.758	157	82	3	1	141	4	154	4.23e-19	79.0
MS.gene28338.t1	MTR_1g096490	34.286	140	85	3	6	144	336	469	1.11e-18	81.6
MS.gene28338.t1	MTR_1g041150	34.247	146	89	3	6	150	424	563	4.46e-18	80.1
MS.gene28338.t1	MTR_5g008695	36.283	113	68	2	30	140	2	112	1.16e-17	73.9
MS.gene28338.t1	MTR_6g007613	33.981	103	68	0	5	107	29	131	1.20e-17	75.1
MS.gene28338.t1	MTR_1g054865	31.293	147	92	3	6	150	467	606	1.32e-17	79.0
MS.gene28338.t1	MTR_4g132040	33.571	140	87	3	6	144	401	535	2.36e-17	78.2
MS.gene28338.t1	MTR_8g078270	34.307	137	86	3	6	141	54	187	2.40e-17	75.1
MS.gene28338.t1	MTR_3g083470	32.414	145	80	3	4	145	92	221	3.14e-17	75.5
MS.gene28338.t1	MTR_3g098090	30.714	140	90	3	6	144	338	471	4.35e-17	77.4
MS.gene28338.t1	MTR_7g074020	31.405	121	81	1	5	125	30	148	4.85e-17	73.6
MS.gene28338.t1	MTR_7g091890	36.429	140	84	3	6	144	364	499	4.85e-17	77.0
MS.gene28338.t1	MTR_7g115040	38.686	137	82	1	5	141	12	146	9.40e-17	72.4
MS.gene28338.t1	MTR_8g095440	32.143	140	88	3	6	144	336	469	2.47e-16	75.1
MS.gene28338.t1	MTR_3g098070	30.000	140	91	3	6	144	335	468	3.95e-16	74.3
MS.gene28338.t1	MTR_1g055255	33.333	141	85	4	6	144	430	563	5.09e-16	74.3
MS.gene28338.t1	MTR_1g052530	38.298	141	80	4	6	144	358	493	2.67e-15	72.0
MS.gene28338.t1	MTR_5g089440	33.645	107	68	1	42	148	80	183	2.83e-15	69.7
MS.gene28338.t1	MTR_4g107490	33.571	140	88	3	6	144	379	514	4.46e-15	71.6
MS.gene28338.t1	MTR_7g106710	31.206	141	88	3	6	144	441	574	8.56e-15	70.9
MS.gene28338.t1	MTR_5g099240	32.857	140	87	3	6	144	330	463	1.62e-14	69.7
MS.gene28338.t1	MTR_5g099240	32.857	140	87	3	6	144	402	535	1.69e-14	69.7
MS.gene28338.t1	MTR_5g027000	29.323	133	92	1	6	138	23	153	1.83e-14	67.0
MS.gene28338.t1	MTR_7g011010	34.921	126	68	4	19	143	87	199	3.81e-14	67.0
MS.gene28338.t1	MTR_7g068710	32.143	140	92	2	5	144	361	497	7.76e-14	67.8
MS.gene28338.t1	MTR_4g127560	47.761	67	35	0	77	143	129	195	8.72e-14	65.9
MS.gene28338.t1	MTR_4g082050	50.000	66	31	1	77	142	76	139	9.86e-14	64.7
MS.gene28338.t1	MTR_5g011850	30.435	138	92	2	4	141	11	144	3.36e-13	63.2
MS.gene28338.t1	MTR_5g025690	34.127	126	69	4	19	143	85	197	4.75e-12	61.2
MS.gene28338.t1	MTR_5g079470	42.857	70	36	2	2	68	4	72	4.79e-12	58.5
MS.gene28338.t1	MTR_3g055570	28.873	142	84	2	4	145	51	175	1.75e-11	59.3
MS.gene28338.t1	MTR_3g055480	48.438	64	30	2	84	146	51	112	5.52e-11	56.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28338.t1	AT2G43290	74.510	153	34	1	1	148	61	213	8.38e-80	235
MS.gene28338.t1	AT1G05990	79.333	150	30	1	1	149	1	150	2.50e-79	231
MS.gene28338.t1	AT3G07490	82.667	150	26	0	1	150	1	150	4.84e-78	228
MS.gene28338.t1	AT3G59440	75.172	145	35	1	3	147	49	192	6.24e-72	214
MS.gene28338.t1	AT4G03290	69.799	149	42	1	1	146	1	149	1.16e-69	207
MS.gene28338.t1	AT4G12860	71.141	149	43	0	1	149	1	149	1.25e-66	199
MS.gene28338.t1	AT5G37770	41.781	146	79	2	4	145	16	159	9.92e-34	116
MS.gene28338.t1	AT5G37770	40.299	67	40	0	2	68	91	157	2.86e-12	61.2
MS.gene28338.t1	AT5G37770	41.781	146	79	2	4	145	16	159	9.92e-34	116
MS.gene28338.t1	AT5G37770	40.299	67	40	0	2	68	91	157	2.86e-12	61.2
MS.gene28338.t1	AT1G24620	45.714	140	74	1	5	144	37	174	1.46e-33	117
MS.gene28338.t1	AT5G37780	44.928	138	74	1	4	141	11	146	1.84e-33	115
MS.gene28338.t1	AT1G66410	44.928	138	74	1	4	141	11	146	1.84e-33	115
MS.gene28338.t1	AT3G56800	44.928	138	74	1	4	141	11	146	5.76e-33	114
MS.gene28338.t1	AT3G56800	44.118	68	36	1	74	141	8	73	8.52e-11	57.0
MS.gene28338.t1	AT2G27030	44.928	138	74	1	4	141	11	146	5.76e-33	114
MS.gene28338.t1	AT2G27030	44.118	68	36	1	74	141	8	73	8.52e-11	57.0
MS.gene28338.t1	AT2G41110	44.928	138	74	1	4	141	11	146	5.76e-33	114
MS.gene28338.t1	AT2G41110	44.118	68	36	1	74	141	8	73	8.52e-11	57.0
MS.gene28338.t1	AT3G43810	44.928	138	74	1	4	141	11	146	5.95e-33	114
MS.gene28338.t1	AT3G43810	44.118	68	36	1	74	141	8	73	8.89e-11	57.0
MS.gene28338.t1	AT1G18210	42.143	140	75	2	2	141	20	153	9.49e-33	114
MS.gene28338.t1	AT1G18210	42.143	140	75	2	2	141	20	153	9.49e-33	114
MS.gene28338.t1	AT2G27030	44.928	138	74	1	4	141	11	146	1.28e-32	114
MS.gene28338.t1	AT5G21274	44.203	138	75	1	4	141	11	146	1.86e-32	112
MS.gene28338.t1	AT5G21274	44.118	68	36	1	74	141	8	73	8.80e-11	57.0
MS.gene28338.t1	AT3G43810	44.928	138	74	1	4	141	11	146	2.54e-32	114
MS.gene28338.t1	AT1G73630	40.288	139	77	2	5	143	20	152	9.45e-31	108
MS.gene28338.t1	AT2G41110	41.333	150	74	2	4	141	11	158	1.15e-29	106
MS.gene28338.t1	AT3G22930	42.553	141	79	1	5	145	35	173	3.35e-29	105
MS.gene28338.t1	AT1G66400	41.429	140	76	3	5	141	15	151	3.60e-29	104
MS.gene28338.t1	AT5G37780	40.523	153	74	2	4	141	11	161	3.62e-29	105
MS.gene28338.t1	AT4G20780	37.419	155	79	1	6	142	30	184	5.69e-29	105
MS.gene28338.t1	AT4G14640	41.304	138	79	1	4	141	12	147	9.39e-28	100
MS.gene28338.t1	AT5G37780	37.805	164	74	2	4	141	11	172	1.78e-27	100
MS.gene28338.t1	AT5G37780	44.715	123	66	1	19	141	13	133	8.33e-27	98.2
MS.gene28338.t1	AT1G66410	44.715	123	66	1	19	141	36	156	1.33e-26	98.2
MS.gene28338.t1	AT2G41100	39.490	157	76	3	4	143	65	219	1.45e-26	101
MS.gene28338.t1	AT2G41100	35.537	121	59	4	38	141	9	127	1.81e-13	66.2
MS.gene28338.t1	AT2G41100	39.490	157	76	3	4	143	65	219	1.45e-26	101
MS.gene28338.t1	AT2G41100	35.537	121	59	4	38	141	9	127	1.81e-13	66.2
MS.gene28338.t1	AT2G41100	39.490	157	76	3	4	143	65	219	1.45e-26	101
MS.gene28338.t1	AT2G41100	35.537	121	59	4	38	141	9	127	1.81e-13	66.2
MS.gene28338.t1	AT2G41100	39.623	159	73	4	4	143	100	254	2.59e-26	101
MS.gene28338.t1	AT2G41100	36.364	154	80	3	4	141	11	162	4.38e-23	92.8
MS.gene28338.t1	AT2G41100	39.623	159	73	4	4	143	100	254	2.59e-26	101
MS.gene28338.t1	AT2G41100	36.364	154	80	3	4	141	11	162	4.38e-23	92.8
MS.gene28338.t1	AT5G17470	38.406	138	81	2	6	141	3	138	3.44e-26	96.7
MS.gene28338.t1	AT5G44460	39.073	151	74	5	6	142	29	175	1.12e-25	96.7
MS.gene28338.t1	AT2G15680	39.130	138	80	2	4	141	49	182	8.49e-25	94.4
MS.gene28338.t1	AT1G66410	43.750	112	61	1	30	141	1	110	2.24e-24	91.3
MS.gene28338.t1	AT1G66410	43.750	112	61	1	30	141	1	110	2.24e-24	91.3
MS.gene28338.t1	AT3G03400	37.857	140	75	3	1	134	1	134	2.26e-24	92.0
MS.gene28338.t1	AT1G32250	34.899	149	89	2	4	146	15	161	2.88e-24	92.4
MS.gene28338.t1	AT3G43810	43.750	112	61	1	30	141	1	110	4.99e-24	90.5
MS.gene28338.t1	AT3G43810	43.750	112	61	1	30	141	1	110	4.99e-24	90.5
MS.gene28338.t1	AT2G41090	36.232	138	83	2	4	141	11	143	6.23e-24	92.4
MS.gene28338.t1	AT1G21550	39.474	152	72	5	3	141	8	152	1.39e-23	90.5
MS.gene28338.t1	AT2G36180	40.288	139	78	3	6	141	1	137	2.21e-23	89.7
MS.gene28338.t1	AT3G10190	36.232	138	85	3	5	141	70	205	3.12e-23	90.9
MS.gene28338.t1	AT5G42380	37.500	144	85	3	1	142	45	185	3.32e-22	87.8
MS.gene28338.t1	AT4G14640	40.650	123	71	1	19	141	9	129	9.42e-22	85.1
MS.gene28338.t1	AT1G76650	34.783	138	87	2	5	142	43	177	1.86e-21	85.5
MS.gene28338.t1	AT1G76650	34.783	138	87	2	5	142	43	177	1.86e-21	85.5
MS.gene28338.t1	AT3G51920	31.469	143	96	1	4	146	11	151	2.26e-21	84.7
MS.gene28338.t1	AT1G76640	37.589	141	82	3	5	142	22	159	2.52e-21	84.7
MS.gene28338.t1	AT5G19360	37.410	139	83	2	6	144	374	508	5.80e-21	88.2
MS.gene28338.t1	AT3G50360	31.690	142	95	1	5	146	27	166	6.09e-21	84.0
MS.gene28338.t1	AT5G12180	37.410	139	83	2	6	144	379	513	7.44e-21	88.2
MS.gene28338.t1	AT3G25600	34.437	151	89	3	5	150	12	157	1.83e-20	82.4
MS.gene28338.t1	AT1G18530	34.266	143	84	3	5	142	7	144	5.64e-20	81.3
MS.gene28338.t1	AT4G23650	35.252	139	86	2	6	144	384	518	6.51e-20	85.5
MS.gene28338.t1	AT4G04695	35.211	142	84	3	6	145	337	472	7.73e-20	85.1
MS.gene28338.t1	AT1G50700	35.000	140	85	3	6	144	379	513	1.92e-19	84.0
MS.gene28338.t1	AT2G31500	36.242	149	85	5	3	144	365	510	2.20e-19	84.0
MS.gene28338.t1	AT4G21940	35.461	141	83	3	6	144	407	541	4.72e-19	82.8
MS.gene28338.t1	AT4G21940	35.461	141	83	3	6	144	407	541	5.08e-19	82.8
MS.gene28338.t1	AT4G37010	28.873	142	99	1	5	146	31	170	5.16e-19	79.0
MS.gene28338.t1	AT4G37010	28.873	142	99	1	5	146	27	166	5.37e-19	79.0
MS.gene28338.t1	AT1G76040	35.461	141	83	3	6	144	179	313	6.41e-19	81.6
MS.gene28338.t1	AT1G76040	35.461	141	83	3	6	144	179	313	6.41e-19	81.6
MS.gene28338.t1	AT5G12480	35.971	139	87	2	6	144	271	407	8.27e-19	82.0
MS.gene28338.t1	AT3G20410	34.286	140	86	3	6	144	397	531	8.51e-19	82.0
MS.gene28338.t1	AT3G20410	34.286	140	86	3	6	144	397	531	8.51e-19	82.0
MS.gene28338.t1	AT3G03000	35.664	143	89	2	5	146	20	160	8.85e-19	78.2
MS.gene28338.t1	AT3G03000	44.615	65	36	0	4	68	93	157	9.89e-13	62.4
MS.gene28338.t1	AT3G50770	34.028	144	84	4	5	141	64	203	9.76e-19	79.0
MS.gene28338.t1	AT1G76040	35.461	141	83	3	6	144	417	551	1.20e-18	81.6
MS.gene28338.t1	AT5G12480	35.971	139	87	2	6	144	365	501	1.26e-18	81.6
MS.gene28338.t1	AT2G41410	34.286	140	89	3	4	141	69	207	1.59e-18	79.0
MS.gene28338.t1	AT1G76650	34.058	138	78	4	5	142	43	167	3.09e-18	77.0
MS.gene28338.t1	AT1G74740	35.714	140	85	3	6	144	365	500	3.64e-18	80.5
MS.gene28338.t1	AT3G57530	37.037	135	81	2	10	144	373	503	9.94e-18	79.3
MS.gene28338.t1	AT2G41860	35.714	140	85	3	6	144	360	495	1.19e-17	79.0
MS.gene28338.t1	AT2G41860	35.714	140	85	3	6	144	360	495	1.35e-17	79.0
MS.gene28338.t1	AT1G35670	32.143	140	88	3	6	144	332	465	1.50e-17	78.6
MS.gene28338.t1	AT5G23580	34.058	138	84	3	6	142	328	459	1.96e-17	78.2
MS.gene28338.t1	AT4G04720	33.562	146	91	3	6	150	385	525	2.27e-17	78.2
MS.gene28338.t1	AT4G04720	33.562	146	91	3	6	150	385	525	2.27e-17	78.2
MS.gene28338.t1	AT2G41100	37.209	129	62	3	32	143	3	129	3.99e-17	74.7
MS.gene28338.t1	AT4G09570	32.374	139	89	2	6	144	331	464	4.52e-17	77.4
MS.gene28338.t1	AT4G04700	34.783	138	84	3	6	142	337	469	4.77e-17	77.0
MS.gene28338.t1	AT5G19450	36.879	141	83	4	6	144	363	499	6.86e-17	76.6
MS.gene28338.t1	AT5G19450	36.879	141	83	4	6	144	363	499	6.86e-17	76.6
MS.gene28338.t1	AT2G38910	31.293	147	92	3	6	150	440	579	9.26e-17	76.3
MS.gene28338.t1	AT1G61950	34.028	144	87	3	6	147	405	542	2.16e-16	75.5
MS.gene28338.t1	AT3G10660	34.507	142	86	4	6	146	492	627	2.41e-16	75.1
MS.gene28338.t1	AT3G10660	34.507	142	86	4	6	146	492	627	2.41e-16	75.1
MS.gene28338.t1	AT3G03410	32.117	137	82	2	7	143	4	129	2.90e-16	70.9
MS.gene28338.t1	AT4G14640	37.113	97	61	0	4	100	12	108	2.92e-16	70.5
MS.gene28338.t1	AT3G22930	37.500	96	60	0	5	100	35	130	4.17e-16	70.5
MS.gene28338.t1	AT5G04870	34.266	143	87	4	6	147	456	592	5.74e-16	73.9
MS.gene28338.t1	AT4G04740	31.507	146	94	3	6	150	374	514	7.94e-16	73.6
MS.gene28338.t1	AT4G04740	31.507	146	94	3	6	150	374	514	7.94e-16	73.6
MS.gene28338.t1	AT4G04740	31.507	146	94	3	6	150	374	514	7.94e-16	73.6
MS.gene28338.t1	AT4G04740	31.507	146	94	3	6	150	374	514	7.94e-16	73.6
MS.gene28338.t1	AT4G04740	31.507	146	94	3	6	150	374	514	7.94e-16	73.6
MS.gene28338.t1	AT4G04740	31.507	146	94	3	6	150	374	514	7.94e-16	73.6
MS.gene28338.t1	AT2G17290	32.857	140	87	3	6	144	391	524	1.56e-15	72.8
MS.gene28338.t1	AT2G17290	32.857	140	87	3	6	144	391	524	1.56e-15	72.8
MS.gene28338.t1	AT1G18890	34.507	142	84	4	6	144	369	504	2.07e-15	72.4
MS.gene28338.t1	AT4G38230	32.857	140	87	3	6	144	186	319	2.18e-15	72.0
MS.gene28338.t1	AT4G38230	32.857	140	87	3	6	144	360	493	4.01e-15	71.6
MS.gene28338.t1	AT4G38230	32.857	140	87	3	6	144	330	463	4.56e-15	71.6
MS.gene28338.t1	AT4G38230	32.857	140	87	3	6	144	330	463	4.56e-15	71.6
MS.gene28338.t1	AT4G35310	32.143	140	88	3	6	144	403	536	7.57e-15	70.9
MS.gene28338.t1	AT4G35310	32.143	140	88	3	6	144	403	536	7.57e-15	70.9
MS.gene28338.t1	AT1G50700	29.518	166	85	4	6	144	379	539	8.40e-15	70.9
MS.gene28338.t1	AT1G62820	30.435	138	92	2	4	141	12	145	1.74e-14	66.6
MS.gene28338.t1	AT4G04710	32.624	141	87	4	6	144	338	472	1.89e-14	69.7
MS.gene28338.t1	AT4G04710	31.973	147	92	4	6	150	324	464	1.95e-14	69.7
MS.gene28338.t1	AT4G04710	32.624	141	87	4	6	144	351	485	2.38e-14	69.3
MS.gene28338.t1	AT1G12310	30.435	138	92	2	4	141	12	145	4.19e-14	65.9
MS.gene28338.t1	AT2G17890	31.250	144	85	5	5	142	415	550	5.35e-14	68.6
MS.gene28338.t1	AT3G51850	30.714	140	94	2	5	144	359	495	6.20e-14	68.2
MS.gene28338.t1	AT2G41100	47.143	70	35	1	74	143	8	75	7.75e-14	65.1
MS.gene28338.t1	AT4G04710	32.168	143	87	5	6	144	351	487	4.34e-13	65.9
MS.gene28338.t1	AT3G01830	28.873	142	93	5	4	142	10	146	5.49e-13	62.8
MS.gene28338.t1	AT3G29000	30.952	126	71	2	22	146	84	194	7.21e-13	63.5
MS.gene28338.t1	AT5G39670	41.026	78	45	1	68	144	125	202	2.61e-12	62.0

Find 37 sgRNAs with CRISPR-Local

Find 41 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GAAAGAACTAACGGATTCTT+TGG	0.245237	4.4:-39208761	MS.gene28338:CDS
ACGGATTCTTTGGAGAATTT+AGG	0.250663	4.4:-39208751	MS.gene28338:CDS
TTCAACGTCTTTGATCAAAA+TGG	0.304357	4.4:-39208583	MS.gene28338:CDS
CCCCGTTCCTATCGAACATT+TGG	0.339282	4.4:+39208800	None:intergenic
TGATGGTATGGTTAATTATA+AGG	0.352090	4.4:-39208446	MS.gene28338:CDS
AATACACGCTTTAGCTCGTT+TGG	0.376231	4.4:+39208823	None:intergenic
TCCAAATGTTCGATAGGAAC+GGG	0.395385	4.4:-39208801	MS.gene28338:CDS
ATTTGTGATAACTCCTTGTC+AGG	0.440737	4.4:+39208718	None:intergenic
GGAGGAGGTTTCAGTGCTCT+TGG	0.442173	4.4:-39208403	MS.gene28338:CDS
TGCGTGGATTTAGACGAGTT+TGG	0.464114	4.4:-39208664	MS.gene28338:CDS
ATTATGAAGGTGGATGTTGA+TGG	0.502088	4.4:-39208469	MS.gene28338:CDS
ATCGAGAAGATTGATGTCAA+TGG	0.505624	4.4:-39208694	MS.gene28338:CDS
GAACCGTTGAGGAATGTAAG+AGG	0.523568	4.4:-39208495	MS.gene28338:CDS
AAGCAAATGATGAAAGGAGG+AGG	0.547604	4.4:-39208418	MS.gene28338:CDS
ATGTAAGAGGATGATTATGA+AGG	0.554925	4.4:-39208482	MS.gene28338:CDS
GGATGTTGATGGTGATGGTA+TGG	0.555539	4.4:-39208458	MS.gene28338:CDS
TTCCAAATGTTCGATAGGAA+CGG	0.565928	4.4:-39208802	MS.gene28338:CDS
GAGTTTAAGCAAATGATGAA+AGG	0.569854	4.4:-39208424	MS.gene28338:CDS
TGAGTTATATCAATCCATCA+TGG	0.571988	4.4:-39208641	MS.gene28338:CDS
TTTAAGCAAATGATGAAAGG+AGG	0.572723	4.4:-39208421	MS.gene28338:CDS
AAGGTGGATGTTGATGGTGA+TGG	0.573021	4.4:-39208463	MS.gene28338:CDS
TCATCTCTTGGTCTTAAACA+AGG	0.574535	4.4:-39208520	MS.gene28338:CDS
GTGTATTCCAAATGTTCGAT+AGG	0.587310	4.4:-39208807	MS.gene28338:CDS
CATCCTCTTACATTCCTCAA+CGG	0.587939	4.4:+39208492	None:intergenic
AAGATTGATGTCAATGGAGA+CGG	0.589358	4.4:-39208688	MS.gene28338:CDS
GTCTTTGATCAAAATGGCGA+CGG	0.591199	4.4:-39208577	MS.gene28338:CDS
AACCGTCGAGGAACTGAGAG+TGG	0.593533	4.4:-39208548	MS.gene28338:CDS
AGGAATCTTCATACCTGACA+AGG	0.597840	4.4:-39208731	MS.gene28338:CDS
TAAGAGGATGATTATGAAGG+TGG	0.599779	4.4:-39208479	MS.gene28338:CDS
AGACGAAGAGGAAGACATGA+GGG	0.607446	4.4:-39208611	MS.gene28338:CDS
AATAACAAAGAAAGAACTAA+CGG	0.609601	4.4:-39208770	MS.gene28338:CDS
AAGACGAAGAGGAAGACATG+AGG	0.633361	4.4:-39208612	MS.gene28338:CDS
ATGTTCGATAGGAACGGGGA+CGG	0.641498	4.4:-39208796	MS.gene28338:CDS
AACCACTCTCAGTTCCTCGA+CGG	0.654209	4.4:+39208546	None:intergenic
TGTCAATGGAGACGGTTGCG+TGG	0.664768	4.4:-39208680	MS.gene28338:CDS
TAAACAAGGAAGAACCGTTG+AGG	0.674493	4.4:-39208506	MS.gene28338:CDS
CCAAATGTTCGATAGGAACG+GGG	0.693678	4.4:-39208800	MS.gene28338:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATAACAAAGAAAGAACTAA+CGG	-	chr4.4:39208458-39208477	MS.gene28338:CDS	20.0%
!	TGATGGTATGGTTAATTATA+AGG	-	chr4.4:39208782-39208801	MS.gene28338:CDS	25.0%
	ATGTAAGAGGATGATTATGA+AGG	-	chr4.4:39208746-39208765	MS.gene28338:CDS	30.0%
	GAGTTTAAGCAAATGATGAA+AGG	-	chr4.4:39208804-39208823	MS.gene28338:CDS	30.0%
	TGAGTTATATCAATCCATCA+TGG	-	chr4.4:39208587-39208606	MS.gene28338:CDS	30.0%
	TTCAACGTCTTTGATCAAAA+TGG	-	chr4.4:39208645-39208664	MS.gene28338:CDS	30.0%
	TTTAAGCAAATGATGAAAGG+AGG	-	chr4.4:39208807-39208826	MS.gene28338:CDS	30.0%
	AAGATTGATGTCAATGGAGA+CGG	-	chr4.4:39208540-39208559	MS.gene28338:CDS	35.0%
	ATCGAGAAGATTGATGTCAA+TGG	-	chr4.4:39208534-39208553	MS.gene28338:CDS	35.0%
	ATTATGAAGGTGGATGTTGA+TGG	-	chr4.4:39208759-39208778	MS.gene28338:CDS	35.0%
	ATTTGTGATAACTCCTTGTC+AGG	+	chr4.4:39208513-39208532	None:intergenic	35.0%
	GTGTATTCCAAATGTTCGAT+AGG	-	chr4.4:39208421-39208440	MS.gene28338:CDS	35.0%
	TAAGAGGATGATTATGAAGG+TGG	-	chr4.4:39208749-39208768	MS.gene28338:CDS	35.0%
	TTCCAAATGTTCGATAGGAA+CGG	-	chr4.4:39208426-39208445	MS.gene28338:CDS	35.0%
!	ACGGATTCTTTGGAGAATTT+AGG	-	chr4.4:39208477-39208496	MS.gene28338:CDS	35.0%
!!	GAAAGAACTAACGGATTCTT+TGG	-	chr4.4:39208467-39208486	MS.gene28338:CDS	35.0%
!!	TCATCTCTTGGTCTTAAACA+AGG	-	chr4.4:39208708-39208727	MS.gene28338:CDS	35.0%
	AAGCAAATGATGAAAGGAGG+AGG	-	chr4.4:39208810-39208829	MS.gene28338:CDS	40.0%
	AGGAATCTTCATACCTGACA+AGG	-	chr4.4:39208497-39208516	MS.gene28338:CDS	40.0%
	CATCCTCTTACATTCCTCAA+CGG	+	chr4.4:39208739-39208758	None:intergenic	40.0%
	GTCTTTGATCAAAATGGCGA+CGG	-	chr4.4:39208651-39208670	MS.gene28338:CDS	40.0%
	TAAACAAGGAAGAACCGTTG+AGG	-	chr4.4:39208722-39208741	MS.gene28338:CDS	40.0%
	TCCAAATGTTCGATAGGAAC+GGG	-	chr4.4:39208427-39208446	MS.gene28338:CDS	40.0%
!	AATACACGCTTTAGCTCGTT+TGG	+	chr4.4:39208408-39208427	None:intergenic	40.0%
!!	TTCGTCTTTTTCGTCCATGA+TGG	+	chr4.4:39208604-39208623	None:intergenic	40.0%
!!!	AGAGTGGTTTTGTCATCTCT+TGG	-	chr4.4:39208696-39208715	MS.gene28338:CDS	40.0%
	AAGACGAAGAGGAAGACATG+AGG	-	chr4.4:39208616-39208635	MS.gene28338:CDS	45.0%
	AGACGAAGAGGAAGACATGA+GGG	-	chr4.4:39208617-39208636	MS.gene28338:CDS	45.0%
	CATGGACGAAAAAGACGAAG+AGG	-	chr4.4:39208605-39208624	MS.gene28338:CDS	45.0%
	CCAAATGTTCGATAGGAACG+GGG	-	chr4.4:39208428-39208447	MS.gene28338:CDS	45.0%
	GAACCGTTGAGGAATGTAAG+AGG	-	chr4.4:39208733-39208752	MS.gene28338:CDS	45.0%
	TGCGTGGATTTAGACGAGTT+TGG	-	chr4.4:39208564-39208583	MS.gene28338:CDS	45.0%
!!	AAGGTGGATGTTGATGGTGA+TGG	-	chr4.4:39208765-39208784	MS.gene28338:CDS	45.0%
!!	GGATGTTGATGGTGATGGTA+TGG	-	chr4.4:39208770-39208789	MS.gene28338:CDS	45.0%
	AACCACTCTCAGTTCCTCGA+CGG	+	chr4.4:39208685-39208704	None:intergenic	50.0%
	ATGTTCGATAGGAACGGGGA+CGG	-	chr4.4:39208432-39208451	MS.gene28338:CDS	50.0%
	CCCCGTTCCTATCGAACATT+TGG	+	chr4.4:39208431-39208450	None:intergenic	50.0%
!!	CGACGGTTTTATAACCGTCG+AGG	-	chr4.4:39208668-39208687	MS.gene28338:CDS	50.0%
	AACCGTCGAGGAACTGAGAG+TGG	-	chr4.4:39208680-39208699	MS.gene28338:CDS	55.0%
	GGAGGAGGTTTCAGTGCTCT+TGG	-	chr4.4:39208825-39208844	MS.gene28338:CDS	55.0%
	TGTCAATGGAGACGGTTGCG+TGG	-	chr4.4:39208548-39208567	MS.gene28338:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	39208399	39208851	39208399	ID=MS.gene28338
chr4.4	mRNA	39208399	39208851	39208399	ID=MS.gene28338.t1;Parent=MS.gene28338
chr4.4	exon	39208399	39208851	39208399	ID=MS.gene28338.t1.exon1;Parent=MS.gene28338.t1
chr4.4	CDS	39208399	39208851	39208399	ID=cds.MS.gene28338.t1;Parent=MS.gene28338.t1

Gene Sequence

>MS.gene28338

ATGGATCCAAACGAGCTAAAGCGTGTATTCCAAATGTTCGATAGGAACGGGGACGGTAGAATAACAAAGAAAGAACTAACGGATTCTTTGGAGAATTTAGGAATCTTCATACCTGACAAGGAGTTATCACAAATGATCGAGAAGATTGATGTCAATGGAGACGGTTGCGTGGATTTAGACGAGTTTGGTGAGTTATATCAATCCATCATGGACGAAAAAGACGAAGAGGAAGACATGAGGGAAGCTTTCAACGTCTTTGATCAAAATGGCGACGGTTTTATAACCGTCGAGGAACTGAGAGTGGTTTTGTCATCTCTTGGTCTTAAACAAGGAAGAACCGTTGAGGAATGTAAGAGGATGATTATGAAGGTGGATGTTGATGGTGATGGTATGGTTAATTATAAGGAGTTTAAGCAAATGATGAAAGGAGGAGGTTTCAGTGCTCTTGGTTAA

Protein sequence

>MS.gene28338.t1

MDPNELKRVFQMFDRNGDGRITKKELTDSLENLGIFIPDKELSQMIEKIDVNGDGCVDLDEFGELYQSIMDEKDEEEDMREAFNVFDQNGDGFITVEELRVVLSSLGLKQGRTVEECKRMIMKVDVDGDGMVNYKEFKQMMKGGGFSALG