Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041795.t1 | XP_003609790.1 | 93.3 | 163 | 11 | 0 | 1 | 163 | 1 | 163 | 1.10E-82 | 315.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041795.t1 | Q9FDX6 | 58.0 | 162 | 54 | 3 | 1 | 153 | 1 | 157 | 1.4e-44 | 180.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041795.t1 | G7JNY0 | 93.3 | 163 | 11 | 0 | 1 | 163 | 1 | 163 | 8.2e-83 | 315.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041795.t1 | MTR_4g122260 | 93.252 | 163 | 11 | 0 | 1 | 163 | 1 | 163 | 5.38e-110 | 310 |
MS.gene041795.t1 | MTR_1g076650 | 29.252 | 147 | 96 | 3 | 10 | 154 | 6 | 146 | 3.16e-14 | 66.2 |
MS.gene041795.t1 | MTR_1g071150 | 28.378 | 148 | 101 | 2 | 10 | 157 | 6 | 148 | 7.91e-14 | 65.5 |
MS.gene041795.t1 | MTR_5g017550 | 28.477 | 151 | 103 | 3 | 4 | 154 | 36 | 181 | 3.27e-13 | 64.7 |
MS.gene041795.t1 | MTR_1g041285 | 28.082 | 146 | 97 | 3 | 11 | 154 | 7 | 146 | 2.29e-11 | 58.9 |
MS.gene041795.t1 | MTR_7g115040 | 30.216 | 139 | 93 | 2 | 16 | 154 | 12 | 146 | 4.72e-11 | 58.2 |
MS.gene041795.t1 | MTR_7g087610 | 25.000 | 140 | 101 | 2 | 15 | 154 | 11 | 146 | 9.48e-11 | 57.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041795.t1 | AT5G49480 | 57.669 | 163 | 55 | 3 | 1 | 154 | 1 | 158 | 1.44e-56 | 175 |
MS.gene041795.t1 | AT3G22930 | 30.000 | 150 | 97 | 3 | 10 | 157 | 29 | 172 | 1.19e-14 | 68.2 |
MS.gene041795.t1 | AT4G14640 | 29.577 | 142 | 92 | 3 | 15 | 154 | 12 | 147 | 4.15e-13 | 63.5 |
MS.gene041795.t1 | AT4G37010 | 26.115 | 157 | 104 | 3 | 6 | 154 | 13 | 165 | 1.65e-12 | 62.4 |
MS.gene041795.t1 | AT4G37010 | 26.115 | 157 | 104 | 3 | 6 | 154 | 9 | 161 | 1.67e-12 | 62.4 |
MS.gene041795.t1 | AT1G18530 | 27.397 | 146 | 101 | 2 | 17 | 159 | 8 | 151 | 1.34e-11 | 59.7 |
MS.gene041795.t1 | AT3G43810 | 24.324 | 148 | 100 | 3 | 15 | 158 | 11 | 150 | 9.59e-11 | 58.5 |
Find 59 sgRNAs with CRISPR-Local
Find 58 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCTACTGATGAAGAGATTA+AGG | 0.345504 | 8.3:-6543301 | MS.gene041795:CDS |
TGGAGATTTGAAGAATTATA+TGG | 0.346456 | 8.3:-6543340 | MS.gene041795:CDS |
AAGTCGGTTGTGCTAGGTTG+TGG | 0.373923 | 8.3:+6543645 | None:intergenic |
TTTGAAGAATTATATGGCTT+GGG | 0.391177 | 8.3:-6543334 | MS.gene041795:CDS |
GAAAAGAGAGCGTTGGGATG+TGG | 0.396765 | 8.3:-6543420 | MS.gene041795:CDS |
AACATCATCATGTGTCCATC+TGG | 0.418396 | 8.3:-6543681 | None:intergenic |
ACAGTCACAGGTGGCGTGAA+TGG | 0.423179 | 8.3:-6543546 | MS.gene041795:CDS |
AACGGTGGCGTTAGCTTCGA+TGG | 0.425296 | 8.3:-6543249 | MS.gene041795:CDS |
ATTTGAAGAATTATATGGCT+TGG | 0.438657 | 8.3:-6543335 | MS.gene041795:CDS |
AATTAATTGAATCAATTAGC+TGG | 0.438984 | 8.3:+6543192 | None:intergenic |
TAGGTTGTGGGCGGAGGCTA+CGG | 0.443861 | 8.3:+6543658 | None:intergenic |
GGTCGGAAGTCGGTTGTGCT+AGG | 0.461824 | 8.3:+6543639 | None:intergenic |
AGTCGGTTGTGCTAGGTTGT+GGG | 0.462510 | 8.3:+6543646 | None:intergenic |
ATTCACGCCACCTGTGACTG+TGG | 0.465058 | 8.3:+6543548 | None:intergenic |
TTGTGCTAGGTTGTGGGCGG+AGG | 0.474583 | 8.3:+6543652 | None:intergenic |
AAGAATTATATGGCTTGGGC+TGG | 0.482717 | 8.3:-6543330 | MS.gene041795:CDS |
CTCCACGAATCCATCCTTGT+TGG | 0.484249 | 8.3:+6543482 | None:intergenic |
AATGGAGAAAAGAGAGCGTT+GGG | 0.487401 | 8.3:-6543426 | MS.gene041795:CDS |
ATTAAGGCTATGATTAAGCT+TGG | 0.501005 | 8.3:-6543285 | MS.gene041795:CDS |
CGGTGCCATGATGTCGGTGG+CGG | 0.526043 | 8.3:-6543508 | MS.gene041795:CDS |
AAAAGAGAGCGTTGGGATGT+GGG | 0.529403 | 8.3:-6543419 | MS.gene041795:CDS |
GTCAAATGCCGGTCGGAAGT+CGG | 0.535676 | 8.3:+6543629 | None:intergenic |
CAATGGAGAAAAGAGAGCGT+TGG | 0.541706 | 8.3:-6543427 | MS.gene041795:CDS |
GGCCATGGAAGATGTGTTCA+AGG | 0.543484 | 8.3:-6543397 | MS.gene041795:CDS |
GGAAGATGTGTTCAAGGTGA+TGG | 0.543516 | 8.3:-6543391 | MS.gene041795:CDS |
CACCTTGAACACATCTTCCA+TGG | 0.544540 | 8.3:+6543395 | None:intergenic |
TCATTCTACGCCACAGTCAC+AGG | 0.546712 | 8.3:-6543558 | MS.gene041795:CDS |
AGCGTTGGGATGTGGGGCCA+TGG | 0.550034 | 8.3:-6543412 | MS.gene041795:CDS |
GGTGTCCGCCACCGACATCA+TGG | 0.552161 | 8.3:+6543503 | None:intergenic |
GGGCGGAGGCTACGGCCAGA+TGG | 0.563386 | 8.3:+6543666 | None:intergenic |
CACCAACAAGGATGGATTCG+TGG | 0.565557 | 8.3:-6543484 | MS.gene041795:CDS |
AAGGCTATGATTAAGCTTGG+TGG | 0.567678 | 8.3:-6543282 | MS.gene041795:CDS |
GAATTCGAGCGGGTGGTTAG+CGG | 0.572181 | 8.3:-6543453 | MS.gene041795:CDS |
TGTGATGGTAAGCTTAGTCA+TGG | 0.573041 | 8.3:-6543360 | MS.gene041795:CDS |
AGAATGAACGGAGGTCATCA+CGG | 0.579774 | 8.3:+6543574 | None:intergenic |
GTGGCGGACACCAACAAGGA+TGG | 0.583986 | 8.3:-6543492 | MS.gene041795:CDS |
AATGGAGGAGACGATGCAAT+CGG | 0.588136 | 8.3:-6543528 | MS.gene041795:CDS |
ATTCTTGACACCGATTGCGA+CGG | 0.588733 | 8.3:-6543606 | MS.gene041795:CDS |
GTGTCAAGAATGTCAAATGC+CGG | 0.601112 | 8.3:+6543618 | None:intergenic |
CGGGTGGTTAGCGGAAACAA+TGG | 0.602363 | 8.3:-6543444 | MS.gene041795:CDS |
GTCACAGGTGGCGTGAATGG+AGG | 0.607930 | 8.3:-6543543 | MS.gene041795:CDS |
GGAGTACGAGGAATTCGAGC+GGG | 0.609161 | 8.3:-6543463 | MS.gene041795:CDS |
AAAGAGAGCGTTGGGATGTG+GGG | 0.611324 | 8.3:-6543418 | MS.gene041795:CDS |
TAGCACAACCGACTTCCGAC+CGG | 0.613292 | 8.3:-6543637 | MS.gene041795:CDS |
CTTGGTGGTGGTGATCAAAA+CGG | 0.629557 | 8.3:-6543267 | MS.gene041795:CDS |
GGATGGATTCGTGGAGTACG+AGG | 0.629636 | 8.3:-6543475 | MS.gene041795:CDS |
GTCGGTGGCGGACACCAACA+AGG | 0.635758 | 8.3:-6543496 | MS.gene041795:CDS |
TGCAATCGGTGCCATGATGT+CGG | 0.643160 | 8.3:-6543514 | MS.gene041795:CDS |
GTACGAGGAATTCGAGCGGG+TGG | 0.644464 | 8.3:-6543460 | MS.gene041795:CDS |
CGGTTGTGCTAGGTTGTGGG+CGG | 0.647620 | 8.3:+6543649 | None:intergenic |
CAAGAATGTCAAATGCCGGT+CGG | 0.649071 | 8.3:+6543622 | None:intergenic |
TGACTGTGGCGTAGAATGAA+CGG | 0.660507 | 8.3:+6543562 | None:intergenic |
GCTATGATTAAGCTTGGTGG+TGG | 0.672010 | 8.3:-6543279 | MS.gene041795:CDS |
TTCTACGCCACAGTCACAGG+TGG | 0.673372 | 8.3:-6543555 | MS.gene041795:CDS |
AATCGGTGCCATGATGTCGG+TGG | 0.708734 | 8.3:-6543511 | MS.gene041795:CDS |
GGTGGTGGTGATCAAAACGG+TGG | 0.729393 | 8.3:-6543264 | MS.gene041795:CDS |
TGGAGTACGAGGAATTCGAG+CGG | 0.729660 | 8.3:-6543464 | MS.gene041795:CDS |
GTGATGGATAGAGATTGTGA+TGG | 0.773795 | 8.3:-6543375 | MS.gene041795:CDS |
CTGTGGCGTAGAATGAACGG+AGG | 0.784689 | 8.3:+6543565 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | ATTTGAAGAATTATATGGCT+TGG | - | chr8.3:6543540-6543559 | MS.gene041795:CDS | 25.0% |
! | TGGAGATTTGAAGAATTATA+TGG | - | chr8.3:6543535-6543554 | MS.gene041795:CDS | 25.0% |
! | TTTGAAGAATTATATGGCTT+GGG | - | chr8.3:6543541-6543560 | MS.gene041795:CDS | 25.0% |
ATTAAGGCTATGATTAAGCT+TGG | - | chr8.3:6543590-6543609 | MS.gene041795:CDS | 30.0% | |
TGCTACTGATGAAGAGATTA+AGG | - | chr8.3:6543574-6543593 | MS.gene041795:CDS | 35.0% | |
AAGGCTATGATTAAGCTTGG+TGG | - | chr8.3:6543593-6543612 | MS.gene041795:CDS | 40.0% | |
GTGTCAAGAATGTCAAATGC+CGG | + | chr8.3:6543260-6543279 | None:intergenic | 40.0% | |
TGTGATGGTAAGCTTAGTCA+TGG | - | chr8.3:6543515-6543534 | MS.gene041795:CDS | 40.0% | |
! | AAGAATTATATGGCTTGGGC+TGG | - | chr8.3:6543545-6543564 | MS.gene041795:CDS | 40.0% |
!! | AATGGAGAAAAGAGAGCGTT+GGG | - | chr8.3:6543449-6543468 | MS.gene041795:CDS | 40.0% |
!! | GTGATGGATAGAGATTGTGA+TGG | - | chr8.3:6543500-6543519 | MS.gene041795:CDS | 40.0% |
AATGGAGGAGACGATGCAAT+CGG | - | chr8.3:6543347-6543366 | MS.gene041795:CDS | 45.0% | |
AGAATGAACGGAGGTCATCA+CGG | + | chr8.3:6543304-6543323 | None:intergenic | 45.0% | |
CAAGAATGTCAAATGCCGGT+CGG | + | chr8.3:6543256-6543275 | None:intergenic | 45.0% | |
CACCTTGAACACATCTTCCA+TGG | + | chr8.3:6543483-6543502 | None:intergenic | 45.0% | |
GGAAGATGTGTTCAAGGTGA+TGG | - | chr8.3:6543484-6543503 | MS.gene041795:CDS | 45.0% | |
TGACTGTGGCGTAGAATGAA+CGG | + | chr8.3:6543316-6543335 | None:intergenic | 45.0% | |
! | ATTCTTGACACCGATTGCGA+CGG | - | chr8.3:6543269-6543288 | MS.gene041795:CDS | 45.0% |
! | CAATGGAGAAAAGAGAGCGT+TGG | - | chr8.3:6543448-6543467 | MS.gene041795:CDS | 45.0% |
! | GCTATGATTAAGCTTGGTGG+TGG | - | chr8.3:6543596-6543615 | MS.gene041795:CDS | 45.0% |
!! | AAAAGAGAGCGTTGGGATGT+GGG | - | chr8.3:6543456-6543475 | MS.gene041795:CDS | 45.0% |
!! | CTTGGTGGTGGTGATCAAAA+CGG | - | chr8.3:6543608-6543627 | MS.gene041795:CDS | 45.0% |
!!! | GCTTATTTTGCCGTCGCAAT+CGG | + | chr8.3:6543282-6543301 | None:intergenic | 45.0% |
AAGTCGGTTGTGCTAGGTTG+TGG | + | chr8.3:6543233-6543252 | None:intergenic | 50.0% | |
AGTCGGTTGTGCTAGGTTGT+GGG | + | chr8.3:6543232-6543251 | None:intergenic | 50.0% | |
CTCCACGAATCCATCCTTGT+TGG | + | chr8.3:6543396-6543415 | None:intergenic | 50.0% | |
GGCCATGGAAGATGTGTTCA+AGG | - | chr8.3:6543478-6543497 | MS.gene041795:CDS | 50.0% | |
TCATTCTACGCCACAGTCAC+AGG | - | chr8.3:6543317-6543336 | MS.gene041795:CDS | 50.0% | |
TGGAGTACGAGGAATTCGAG+CGG | - | chr8.3:6543411-6543430 | MS.gene041795:CDS | 50.0% | |
! | CACCAACAAGGATGGATTCG+TGG | - | chr8.3:6543391-6543410 | MS.gene041795:CDS | 50.0% |
!! | AAAGAGAGCGTTGGGATGTG+GGG | - | chr8.3:6543457-6543476 | MS.gene041795:CDS | 50.0% |
!! | GAAAAGAGAGCGTTGGGATG+TGG | - | chr8.3:6543455-6543474 | MS.gene041795:CDS | 50.0% |
!! | TGCAATCGGTGCCATGATGT+CGG | - | chr8.3:6543361-6543380 | MS.gene041795:CDS | 50.0% |
ACAGTCACAGGTGGCGTGAA+TGG | - | chr8.3:6543329-6543348 | MS.gene041795:CDS | 55.0% | |
ATTCACGCCACCTGTGACTG+TGG | + | chr8.3:6543330-6543349 | None:intergenic | 55.0% | |
CGGGTGGTTAGCGGAAACAA+TGG | - | chr8.3:6543431-6543450 | MS.gene041795:CDS | 55.0% | |
CTGTGGCGTAGAATGAACGG+AGG | + | chr8.3:6543313-6543332 | None:intergenic | 55.0% | |
GAATTCGAGCGGGTGGTTAG+CGG | - | chr8.3:6543422-6543441 | MS.gene041795:CDS | 55.0% | |
GGAGTACGAGGAATTCGAGC+GGG | - | chr8.3:6543412-6543431 | MS.gene041795:CDS | 55.0% | |
GTCAAATGCCGGTCGGAAGT+CGG | + | chr8.3:6543249-6543268 | None:intergenic | 55.0% | |
TTCTACGCCACAGTCACAGG+TGG | - | chr8.3:6543320-6543339 | MS.gene041795:CDS | 55.0% | |
! | AACGGTGGCGTTAGCTTCGA+TGG | - | chr8.3:6543626-6543645 | MS.gene041795:CDS | 55.0% |
! | GGATGGATTCGTGGAGTACG+AGG | - | chr8.3:6543400-6543419 | MS.gene041795:CDS | 55.0% |
! | GGTGGTGGTGATCAAAACGG+TGG | - | chr8.3:6543611-6543630 | MS.gene041795:CDS | 55.0% |
! | TAGCACAACCGACTTCCGAC+CGG | - | chr8.3:6543238-6543257 | MS.gene041795:CDS | 55.0% |
!! | AATCGGTGCCATGATGTCGG+TGG | - | chr8.3:6543364-6543383 | MS.gene041795:CDS | 55.0% |
CGGTTGTGCTAGGTTGTGGG+CGG | + | chr8.3:6543229-6543248 | None:intergenic | 60.0% | |
GGTCGGAAGTCGGTTGTGCT+AGG | + | chr8.3:6543239-6543258 | None:intergenic | 60.0% | |
GTACGAGGAATTCGAGCGGG+TGG | - | chr8.3:6543415-6543434 | MS.gene041795:CDS | 60.0% | |
GTCACAGGTGGCGTGAATGG+AGG | - | chr8.3:6543332-6543351 | MS.gene041795:CDS | 60.0% | |
TAGGTTGTGGGCGGAGGCTA+CGG | + | chr8.3:6543220-6543239 | None:intergenic | 60.0% | |
TTGTGCTAGGTTGTGGGCGG+AGG | + | chr8.3:6543226-6543245 | None:intergenic | 60.0% | |
!! | GTGGCGGACACCAACAAGGA+TGG | - | chr8.3:6543383-6543402 | MS.gene041795:CDS | 60.0% |
GGTGTCCGCCACCGACATCA+TGG | + | chr8.3:6543375-6543394 | None:intergenic | 65.0% | |
! | AGCGTTGGGATGTGGGGCCA+TGG | - | chr8.3:6543463-6543482 | MS.gene041795:CDS | 65.0% |
!! | CGGTGCCATGATGTCGGTGG+CGG | - | chr8.3:6543367-6543386 | MS.gene041795:CDS | 65.0% |
!! | GTCGGTGGCGGACACCAACA+AGG | - | chr8.3:6543379-6543398 | MS.gene041795:CDS | 65.0% |
GGGCGGAGGCTACGGCCAGA+TGG | + | chr8.3:6543212-6543231 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 6543203 | 6543694 | 6543203 | ID=MS.gene041795 |
chr8.3 | mRNA | 6543203 | 6543694 | 6543203 | ID=MS.gene041795.t1;Parent=MS.gene041795 |
chr8.3 | exon | 6543203 | 6543694 | 6543203 | ID=MS.gene041795.t1.exon1;Parent=MS.gene041795.t1 |
chr8.3 | CDS | 6543203 | 6543694 | 6543203 | ID=cds.MS.gene041795.t1;Parent=MS.gene041795.t1 |
Gene Sequence |
Protein sequence |