Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55349.t1 | XP_003614000.1 | 97.7 | 176 | 4 | 0 | 1 | 176 | 1 | 176 | 5.50E-91 | 343.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55349.t1 | B7FMG8 | 97.7 | 176 | 4 | 0 | 1 | 176 | 1 | 176 | 4.0e-91 | 343.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene55349 | 0.817019 | 4.10E-52 | -1.69E-46 |
| MS.gene049284 | MS.gene55349 | 0.823407 | 1.41E-53 | -1.69E-46 |
| MS.gene049346 | MS.gene55349 | 0.804778 | 1.83E-49 | -1.69E-46 |
| MS.gene049351 | MS.gene55349 | 0.812443 | 4.23E-51 | -1.69E-46 |
| MS.gene049427 | MS.gene55349 | 0.851724 | 7.37E-61 | -1.69E-46 |
| MS.gene049491 | MS.gene55349 | 0.801318 | 9.53E-49 | -1.69E-46 |
| MS.gene049661 | MS.gene55349 | 0.825464 | 4.62E-54 | -1.69E-46 |
| MS.gene049662 | MS.gene55349 | 0.829478 | 5.03E-55 | -1.69E-46 |
| MS.gene049758 | MS.gene55349 | 0.812012 | 5.25E-51 | -1.69E-46 |
| MS.gene049805 | MS.gene55349 | 0.810598 | 1.06E-50 | -1.69E-46 |
| MS.gene050076 | MS.gene55349 | 0.858392 | 8.50E-63 | -1.69E-46 |
| MS.gene050301 | MS.gene55349 | 0.867916 | 9.61E-66 | -1.69E-46 |
| MS.gene050397 | MS.gene55349 | 0.832258 | 1.05E-55 | -1.69E-46 |
| MS.gene050404 | MS.gene55349 | 0.840427 | 8.75E-58 | -1.69E-46 |
| MS.gene050406 | MS.gene55349 | 0.850365 | 1.78E-60 | -1.69E-46 |
| MS.gene050432 | MS.gene55349 | 0.858004 | 1.11E-62 | -1.69E-46 |
| MS.gene050464 | MS.gene55349 | 0.849264 | 3.61E-60 | -1.69E-46 |
| MS.gene050529 | MS.gene55349 | 0.884224 | 2.30E-71 | -1.69E-46 |
| MS.gene050593 | MS.gene55349 | 0.816828 | 4.52E-52 | -1.69E-46 |
| MS.gene050670 | MS.gene55349 | 0.867536 | 1.27E-65 | -1.69E-46 |
| MS.gene050767 | MS.gene55349 | 0.809958 | 1.46E-50 | -1.69E-46 |
| MS.gene050770 | MS.gene55349 | 0.811715 | 6.10E-51 | -1.69E-46 |
| MS.gene050783 | MS.gene55349 | 0.843806 | 1.12E-58 | -1.69E-46 |
| MS.gene050812 | MS.gene55349 | 0.861973 | 7.04E-64 | -1.69E-46 |
| MS.gene05101 | MS.gene55349 | 0.853921 | 1.74E-61 | -1.69E-46 |
| MS.gene05105 | MS.gene55349 | 0.862174 | 6.11E-64 | -1.69E-46 |
| MS.gene051171 | MS.gene55349 | 0.814309 | 1.64E-51 | -1.69E-46 |
| MS.gene051242 | MS.gene55349 | 0.802019 | 6.84E-49 | -1.69E-46 |
| MS.gene051387 | MS.gene55349 | 0.82849 | 8.73E-55 | -1.69E-46 |
| MS.gene051471 | MS.gene55349 | 0.860474 | 2.01E-63 | -1.69E-46 |
| MS.gene051525 | MS.gene55349 | 0.816167 | 6.36E-52 | -1.69E-46 |
| MS.gene051582 | MS.gene55349 | 0.89472 | 1.89E-75 | -1.69E-46 |
| MS.gene051666 | MS.gene55349 | 0.822507 | 2.28E-53 | -1.69E-46 |
| MS.gene052011 | MS.gene55349 | -0.803707 | 3.07E-49 | -1.69E-46 |
| MS.gene052078 | MS.gene55349 | 0.85507 | 8.07E-62 | -1.69E-46 |
| MS.gene052178 | MS.gene55349 | 0.811558 | 6.59E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene55349 | 0.853059 | 3.07E-61 | -1.69E-46 |
| MS.gene052253 | MS.gene55349 | 0.820471 | 6.74E-53 | -1.69E-46 |
| MS.gene052290 | MS.gene55349 | 0.808642 | 2.80E-50 | -1.69E-46 |
| MS.gene052310 | MS.gene55349 | 0.887139 | 1.86E-72 | -1.69E-46 |
| MS.gene052322 | MS.gene55349 | 0.805189 | 1.51E-49 | -1.69E-46 |
| MS.gene052326 | MS.gene55349 | 0.820619 | 6.23E-53 | -1.69E-46 |
| MS.gene052340 | MS.gene55349 | 0.870456 | 1.44E-66 | -1.69E-46 |
| MS.gene052421 | MS.gene55349 | 0.837651 | 4.58E-57 | -1.69E-46 |
| MS.gene052481 | MS.gene55349 | 0.80995 | 1.47E-50 | -1.69E-46 |
| MS.gene052485 | MS.gene55349 | 0.812619 | 3.87E-51 | -1.69E-46 |
| MS.gene052505 | MS.gene55349 | 0.807609 | 4.65E-50 | -1.69E-46 |
| MS.gene052767 | MS.gene55349 | 0.81332 | 2.72E-51 | -1.69E-46 |
| MS.gene052982 | MS.gene55349 | 0.802001 | 6.90E-49 | -1.69E-46 |
| MS.gene053103 | MS.gene55349 | 0.848568 | 5.64E-60 | -1.69E-46 |
| MS.gene053104 | MS.gene55349 | 0.836553 | 8.75E-57 | -1.69E-46 |
| MS.gene053107 | MS.gene55349 | 0.842475 | 2.53E-58 | -1.69E-46 |
| MS.gene053209 | MS.gene55349 | 0.849149 | 3.89E-60 | -1.69E-46 |
| MS.gene053322 | MS.gene55349 | 0.831005 | 2.13E-55 | -1.69E-46 |
| MS.gene053330 | MS.gene55349 | 0.828996 | 6.59E-55 | -1.69E-46 |
| MS.gene053557 | MS.gene55349 | 0.845426 | 4.09E-59 | -1.69E-46 |
| MS.gene053836 | MS.gene55349 | 0.838611 | 2.59E-57 | -1.69E-46 |
| MS.gene053907 | MS.gene55349 | 0.83176 | 1.39E-55 | -1.69E-46 |
| MS.gene053928 | MS.gene55349 | 0.829447 | 5.12E-55 | -1.69E-46 |
| MS.gene053971 | MS.gene55349 | 0.857581 | 1.48E-62 | -1.69E-46 |
| MS.gene054123 | MS.gene55349 | 0.814917 | 1.21E-51 | -1.69E-46 |
| MS.gene054376 | MS.gene55349 | 0.829409 | 5.23E-55 | -1.69E-46 |
| MS.gene054719 | MS.gene55349 | 0.819845 | 9.38E-53 | -1.69E-46 |
| MS.gene054802 | MS.gene55349 | 0.808027 | 3.79E-50 | -1.69E-46 |
| MS.gene054803 | MS.gene55349 | 0.80621 | 9.19E-50 | -1.69E-46 |
| MS.gene054804 | MS.gene55349 | 0.809312 | 2.01E-50 | -1.69E-46 |
| MS.gene055116 | MS.gene55349 | 0.883033 | 6.31E-71 | -1.69E-46 |
| MS.gene055277 | MS.gene55349 | 0.867047 | 1.82E-65 | -1.69E-46 |
| MS.gene055369 | MS.gene55349 | 0.815014 | 1.15E-51 | -1.69E-46 |
| MS.gene055370 | MS.gene55349 | 0.814519 | 1.48E-51 | -1.69E-46 |
| MS.gene055390 | MS.gene55349 | 0.809996 | 1.44E-50 | -1.69E-46 |
| MS.gene055412 | MS.gene55349 | 0.83148 | 1.63E-55 | -1.69E-46 |
| MS.gene055422 | MS.gene55349 | 0.838533 | 2.72E-57 | -1.69E-46 |
| MS.gene055428 | MS.gene55349 | 0.856801 | 2.52E-62 | -1.69E-46 |
| MS.gene05553 | MS.gene55349 | 0.863782 | 1.95E-64 | -1.69E-46 |
| MS.gene055604 | MS.gene55349 | 0.806198 | 9.24E-50 | -1.69E-46 |
| MS.gene05592 | MS.gene55349 | 0.80282 | 4.68E-49 | -1.69E-46 |
| MS.gene056191 | MS.gene55349 | 0.81698 | 4.18E-52 | -1.69E-46 |
| MS.gene056407 | MS.gene55349 | 0.882104 | 1.38E-70 | -1.69E-46 |
| MS.gene056410 | MS.gene55349 | 0.800168 | 1.64E-48 | -1.69E-46 |
| MS.gene056451 | MS.gene55349 | 0.821693 | 3.52E-53 | -1.69E-46 |
| MS.gene056511 | MS.gene55349 | 0.803246 | 3.82E-49 | -1.69E-46 |
| MS.gene056609 | MS.gene55349 | 0.8222 | 2.69E-53 | -1.69E-46 |
| MS.gene056612 | MS.gene55349 | 0.866644 | 2.45E-65 | -1.69E-46 |
| MS.gene056633 | MS.gene55349 | 0.809199 | 2.13E-50 | -1.69E-46 |
| MS.gene056659 | MS.gene55349 | 0.839275 | 1.75E-57 | -1.69E-46 |
| MS.gene056664 | MS.gene55349 | 0.829844 | 4.10E-55 | -1.69E-46 |
| MS.gene056723 | MS.gene55349 | 0.805463 | 1.32E-49 | -1.69E-46 |
| MS.gene056796 | MS.gene55349 | 0.826874 | 2.13E-54 | -1.69E-46 |
| MS.gene057011 | MS.gene55349 | 0.849166 | 3.85E-60 | -1.69E-46 |
| MS.gene05702 | MS.gene55349 | 0.883832 | 3.21E-71 | -1.69E-46 |
| MS.gene057121 | MS.gene55349 | 0.808297 | 3.32E-50 | -1.69E-46 |
| MS.gene057123 | MS.gene55349 | 0.803579 | 3.26E-49 | -1.69E-46 |
| MS.gene057124 | MS.gene55349 | 0.853365 | 2.51E-61 | -1.69E-46 |
| MS.gene057129 | MS.gene55349 | 0.813911 | 2.01E-51 | -1.69E-46 |
| MS.gene057146 | MS.gene55349 | 0.820948 | 5.24E-53 | -1.69E-46 |
| MS.gene057295 | MS.gene55349 | 0.80528 | 1.44E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene55349 | 0.813164 | 2.94E-51 | -1.69E-46 |
| MS.gene057439 | MS.gene55349 | 0.801763 | 7.72E-49 | -1.69E-46 |
| MS.gene057450 | MS.gene55349 | 0.805653 | 1.20E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene55349 | 0.817483 | 3.22E-52 | -1.69E-46 |
| MS.gene057823 | MS.gene55349 | 0.812807 | 3.52E-51 | -1.69E-46 |
| MS.gene057825 | MS.gene55349 | 0.804696 | 1.91E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene55349 | 0.85653 | 3.02E-62 | -1.69E-46 |
| MS.gene058019 | MS.gene55349 | 0.834536 | 2.83E-56 | -1.69E-46 |
| MS.gene058082 | MS.gene55349 | 0.834419 | 3.03E-56 | -1.69E-46 |
| MS.gene05811 | MS.gene55349 | 0.809992 | 1.44E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene55349 | 0.852821 | 3.59E-61 | -1.69E-46 |
| MS.gene058233 | MS.gene55349 | 0.899206 | 2.49E-77 | -1.69E-46 |
| MS.gene058276 | MS.gene55349 | 0.851414 | 9.01E-61 | -1.69E-46 |
| MS.gene058293 | MS.gene55349 | 0.869395 | 3.20E-66 | -1.69E-46 |
| MS.gene058365 | MS.gene55349 | 0.852325 | 4.97E-61 | -1.69E-46 |
| MS.gene058660 | MS.gene55349 | 0.862883 | 3.70E-64 | -1.69E-46 |
| MS.gene058700 | MS.gene55349 | 0.801992 | 6.93E-49 | -1.69E-46 |
| MS.gene058746 | MS.gene55349 | 0.831871 | 1.31E-55 | -1.69E-46 |
| MS.gene058787 | MS.gene55349 | 0.814385 | 1.58E-51 | -1.69E-46 |
| MS.gene05886 | MS.gene55349 | 0.816559 | 5.20E-52 | -1.69E-46 |
| MS.gene058928 | MS.gene55349 | 0.804931 | 1.70E-49 | -1.69E-46 |
| MS.gene059011 | MS.gene55349 | 0.81288 | 3.39E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene55349 | 0.83416 | 3.52E-56 | -1.69E-46 |
| MS.gene059141 | MS.gene55349 | 0.819163 | 1.34E-52 | -1.69E-46 |
| MS.gene059420 | MS.gene55349 | 0.814207 | 1.73E-51 | -1.69E-46 |
| MS.gene059518 | MS.gene55349 | 0.806676 | 7.33E-50 | -1.69E-46 |
| MS.gene059536 | MS.gene55349 | 0.808448 | 3.08E-50 | -1.69E-46 |
| MS.gene059597 | MS.gene55349 | 0.849696 | 2.74E-60 | -1.69E-46 |
| MS.gene05959 | MS.gene55349 | 0.814599 | 1.42E-51 | -1.69E-46 |
| MS.gene059676 | MS.gene55349 | 0.859882 | 3.04E-63 | -1.69E-46 |
| MS.gene059688 | MS.gene55349 | 0.885588 | 7.15E-72 | -1.69E-46 |
| MS.gene059692 | MS.gene55349 | 0.895169 | 1.24E-75 | -1.69E-46 |
| MS.gene059695 | MS.gene55349 | 0.897193 | 1.78E-76 | -1.69E-46 |
| MS.gene05984 | MS.gene55349 | 0.807156 | 5.80E-50 | -1.69E-46 |
| MS.gene059894 | MS.gene55349 | 0.86718 | 1.65E-65 | -1.69E-46 |
| MS.gene059960 | MS.gene55349 | 0.852166 | 5.52E-61 | -1.69E-46 |
| MS.gene06037 | MS.gene55349 | 0.800376 | 1.48E-48 | -1.69E-46 |
| MS.gene060403 | MS.gene55349 | 0.831257 | 1.85E-55 | -1.69E-46 |
| MS.gene060407 | MS.gene55349 | 0.867283 | 1.53E-65 | -1.69E-46 |
| MS.gene060804 | MS.gene55349 | 0.825544 | 4.42E-54 | -1.69E-46 |
| MS.gene06090 | MS.gene55349 | 0.817122 | 3.88E-52 | -1.69E-46 |
| MS.gene061049 | MS.gene55349 | 0.889042 | 3.45E-73 | -1.69E-46 |
| MS.gene061051 | MS.gene55349 | -0.843619 | 1.25E-58 | -1.69E-46 |
| MS.gene061154 | MS.gene55349 | 0.836372 | 9.73E-57 | -1.69E-46 |
| MS.gene061159 | MS.gene55349 | 0.835474 | 1.64E-56 | -1.69E-46 |
| MS.gene061200 | MS.gene55349 | 0.808373 | 3.20E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55349.t1 | MTR_5g043580 | 97.727 | 176 | 4 | 0 | 1 | 176 | 1 | 176 | 6.06e-128 | 356 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55349.t1 | AT2G03420 | 73.585 | 106 | 28 | 0 | 69 | 174 | 63 | 168 | 1.02e-53 | 168 |
Find 37 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTTACGAGGGGCGGAAT+GGG | 0.329826 | 5.2:+33114728 | MS.gene55349:CDS |
| CTTCTATTGCAATTCTTCTC+TGG | 0.348974 | 5.2:+33113344 | MS.gene55349:CDS |
| ATGAATTTGTCCCTTGCCTC+TGG | 0.354711 | 5.2:-33114783 | None:intergenic |
| CCTCAAAAGAAGGTTCAGTT+TGG | 0.387035 | 5.2:+33113235 | MS.gene55349:CDS |
| AAGTCAATCTGAGGCAGCTC+AGG | 0.441780 | 5.2:-33113850 | None:intergenic |
| TGAAACCATTAAAACGTTTG+AGG | 0.455321 | 5.2:-33113873 | None:intergenic |
| ACAGGACTAGAGTCTGTTCC+TGG | 0.456712 | 5.2:+33113826 | MS.gene55349:CDS |
| GTAAGAATGATGAGAAGATA+AGG | 0.480601 | 5.2:-33113290 | None:intergenic |
| CGAGGGGCGGAATGGGGAGT+TGG | 0.490686 | 5.2:+33114735 | MS.gene55349:CDS |
| GCTCAAGCAGTTTCTTCACC+AGG | 0.491458 | 5.2:-33114041 | None:intergenic |
| AGATAAGGAGCAAGAAAACT+TGG | 0.492619 | 5.2:-33113275 | None:intergenic |
| ACTGCTTACGAGGGGCGGAA+TGG | 0.499290 | 5.2:+33114727 | MS.gene55349:CDS |
| CATAGCAATGTTGAAGGAGA+AGG | 0.511435 | 5.2:+33114803 | MS.gene55349:CDS |
| GCACATGCTGGATTCATGTC+AGG | 0.519014 | 5.2:+33113799 | MS.gene55349:intron |
| ATCTGAGGCAGCTCAGGACC+AGG | 0.523597 | 5.2:-33113844 | None:intergenic |
| CAAATTCATAGCAATGTTGA+AGG | 0.527626 | 5.2:+33114797 | MS.gene55349:CDS |
| ACTCAGCAATCCTCAAAAGA+AGG | 0.529490 | 5.2:+33113225 | MS.gene55349:CDS |
| ATTCTTCTCTGGTCAACTCC+AGG | 0.534134 | 5.2:+33113355 | MS.gene55349:CDS |
| CTCAAGCAGTTTCTTCACCA+GGG | 0.535692 | 5.2:-33114040 | None:intergenic |
| GTGGAAATCTGAATGAAAGA+TGG | 0.538239 | 5.2:-33113190 | None:intergenic |
| GGGAATGACTCCAGAGGCAA+GGG | 0.550474 | 5.2:+33114773 | MS.gene55349:CDS |
| GGATTCATGTCAGGAATCAC+AGG | 0.551319 | 5.2:+33113808 | MS.gene55349:CDS |
| TCAAGCAGTTTCTTCACCAG+GGG | 0.567433 | 5.2:-33114039 | None:intergenic |
| TGCTTACGAGGGGCGGAATG+GGG | 0.568619 | 5.2:+33114729 | MS.gene55349:CDS |
| AATGAAAGATGGTAATGAAG+AGG | 0.576236 | 5.2:-33113179 | None:intergenic |
| AGGGAATGACTCCAGAGGCA+AGG | 0.577514 | 5.2:+33114772 | MS.gene55349:CDS |
| GAGAACAAGTACTGCTTACG+AGG | 0.584541 | 5.2:+33114717 | MS.gene55349:CDS |
| GTTGGTGATTGTTCAGCAGA+GGG | 0.594398 | 5.2:+33114753 | MS.gene55349:CDS |
| AGTTGGTGATTGTTCAGCAG+AGG | 0.606424 | 5.2:+33114752 | MS.gene55349:CDS |
| CAAGTACTGCTTACGAGGGG+CGG | 0.612792 | 5.2:+33114722 | MS.gene55349:CDS |
| GCAATGTTGAAGGAGAAGGT+TGG | 0.630694 | 5.2:+33114807 | MS.gene55349:CDS |
| CGTTTGAGGAAGTCAATCTG+AGG | 0.656409 | 5.2:-33113859 | None:intergenic |
| AGAACAAGTACTGCTTACGA+GGG | 0.671236 | 5.2:+33114718 | MS.gene55349:CDS |
| ATTGCAATAGAAGCAGCCAA+AGG | 0.674848 | 5.2:-33113334 | None:intergenic |
| AAGATTTAAAGAGACACCCC+TGG | 0.680049 | 5.2:+33114023 | MS.gene55349:CDS |
| AGCAGAGGGAATGACTCCAG+AGG | 0.703314 | 5.2:+33114767 | MS.gene55349:CDS |
| GAACAAGTACTGCTTACGAG+GGG | 0.743478 | 5.2:+33114719 | MS.gene55349:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGTCCAATTAAAAAAAT+TGG | + | chr5.2:33114270-33114289 | MS.gene55349:intron | 15.0% |
| !! | TTTGAATGGTTAATATATTT+CGG | + | chr5.2:33114529-33114548 | MS.gene55349:intron | 15.0% |
| !! | AGTTTCATTTCATGAAATTT+AGG | - | chr5.2:33113936-33113955 | None:intergenic | 20.0% |
| !! | ATTGACAAAAATGTAAGAAT+TGG | + | chr5.2:33114443-33114462 | MS.gene55349:intron | 20.0% |
| !! | CTTTAATTCTTAAGAATCAT+AGG | - | chr5.2:33113680-33113699 | None:intergenic | 20.0% |
| !! | TAGCCTAAAAAAATTATAAG+AGG | - | chr5.2:33114360-33114379 | None:intergenic | 20.0% |
| !! | TTATGATTATTATTTCACAG+AGG | + | chr5.2:33113969-33113988 | MS.gene55349:intron | 20.0% |
| ! | AAATCATGTATGAGAAATGT+CGG | - | chr5.2:33114229-33114248 | None:intergenic | 25.0% |
| ! | AATACATCATATCAGTAACT+AGG | + | chr5.2:33114390-33114409 | MS.gene55349:intron | 25.0% |
| ! | ACCATTCAAAAATAAAGTCA+TGG | - | chr5.2:33114519-33114538 | None:intergenic | 25.0% |
| ! | AGTTAATACTGACGAATAAT+AGG | - | chr5.2:33114609-33114628 | None:intergenic | 25.0% |
| ! | CTCACAAAAAAGAATATTAC+AGG | - | chr5.2:33114482-33114501 | None:intergenic | 25.0% |
| ! | TCCAATTAAAAAAATTGGCT+CGG | + | chr5.2:33114275-33114294 | MS.gene55349:intron | 25.0% |
| !! | TAAGATAGTTTGAGTTAGTT+AGG | + | chr5.2:33113555-33113574 | MS.gene55349:intron | 25.0% |
| !!! | ACCATGACTTTATTTTTGAA+TGG | + | chr5.2:33114515-33114534 | MS.gene55349:intron | 25.0% |
| !!! | ATTTCTGTGTTTTATTCTTC+AGG | + | chr5.2:33114679-33114698 | MS.gene55349:intron | 25.0% |
| !!! | GAGCCTCTTATAATTTTTTT+AGG | + | chr5.2:33114354-33114373 | MS.gene55349:intron | 25.0% |
| ATATGAGATAGAGATAGCAT+AGG | - | chr5.2:33113633-33113652 | None:intergenic | 30.0% | |
| CAAATTCATAGCAATGTTGA+AGG | + | chr5.2:33114797-33114816 | MS.gene55349:CDS | 30.0% | |
| GACATTTCTCATACATGATT+TGG | + | chr5.2:33114228-33114247 | MS.gene55349:intron | 30.0% | |
| GTAAGAATGATGAGAAGATA+AGG | - | chr5.2:33113293-33113312 | None:intergenic | 30.0% | |
| TCTTCAAAAATCAGTTCCTT+TGG | + | chr5.2:33113318-33113337 | MS.gene55349:CDS | 30.0% | |
| TGAAACCATTAAAACGTTTG+AGG | - | chr5.2:33113876-33113895 | None:intergenic | 30.0% | |
| ! | AATGAAAGATGGTAATGAAG+AGG | - | chr5.2:33113182-33113201 | None:intergenic | 30.0% |
| ! | CATTTTCAGCATATTTCTTC+TGG | - | chr5.2:33113999-33114018 | None:intergenic | 30.0% |
| !! | TTTTATTTAGACAAAGTCGC+AGG | + | chr5.2:33114121-33114140 | MS.gene55349:intron | 30.0% |
| !!! | TCCGAGCCAATTTTTTTAAT+TGG | - | chr5.2:33114279-33114298 | None:intergenic | 30.0% |
| AGATAAGGAGCAAGAAAACT+TGG | - | chr5.2:33113278-33113297 | None:intergenic | 35.0% | |
| ATAGGATCTAATGCATACAC+CGG | - | chr5.2:33114591-33114610 | None:intergenic | 35.0% | |
| CTGCATTAAAGCATGGTAAA+AGG | - | chr5.2:33113389-33113408 | None:intergenic | 35.0% | |
| CTTCTATTGCAATTCTTCTC+TGG | + | chr5.2:33113344-33113363 | MS.gene55349:CDS | 35.0% | |
| GTGGAAATCTGAATGAAAGA+TGG | - | chr5.2:33113193-33113212 | None:intergenic | 35.0% | |
| TGACGATTATGATTGATCGA+CGG | + | chr5.2:33113719-33113738 | MS.gene55349:intron | 35.0% | |
| TTATAAGAGGCTCACTCAAT+AGG | - | chr5.2:33114347-33114366 | None:intergenic | 35.0% | |
| ! | AAAGTGCTATGTCGATATGT+CGG | + | chr5.2:33114189-33114208 | MS.gene55349:intron | 35.0% |
| ! | ATTGCTGAGTTTTTCACAGA+AGG | - | chr5.2:33113215-33113234 | None:intergenic | 35.0% |
| ! | GACTTCCTCAAACGTTTTAA+TGG | + | chr5.2:33113868-33113887 | MS.gene55349:CDS | 35.0% |
| ! | TCATACATGATTTGGACATG+AGG | + | chr5.2:33114236-33114255 | MS.gene55349:intron | 35.0% |
| ! | TGGTAAAAGGTTACTTTACC+TGG | - | chr5.2:33113376-33113395 | None:intergenic | 35.0% |
| AAGATTTAAAGAGACACCCC+TGG | + | chr5.2:33114023-33114042 | MS.gene55349:CDS | 40.0% | |
| ACTCAGCAATCCTCAAAAGA+AGG | + | chr5.2:33113225-33113244 | MS.gene55349:CDS | 40.0% | |
| AGTCACTAAGACACATGCTA+AGG | + | chr5.2:33113420-33113439 | MS.gene55349:intron | 40.0% | |
| ATTGCAATAGAAGCAGCCAA+AGG | - | chr5.2:33113337-33113356 | None:intergenic | 40.0% | |
| CATAGCAATGTTGAAGGAGA+AGG | + | chr5.2:33114803-33114822 | MS.gene55349:CDS | 40.0% | |
| CCTCAAAAGAAGGTTCAGTT+TGG | + | chr5.2:33113235-33113254 | MS.gene55349:CDS | 40.0% | |
| TTGCATGCTGCATTAAAGCA+TGG | - | chr5.2:33113396-33113415 | None:intergenic | 40.0% | |
| ! | AGAACAAGTACTGCTTACGA+GGG | + | chr5.2:33114718-33114737 | MS.gene55349:CDS | 40.0% |
| ! | CCAAACTGAACCTTCTTTTG+AGG | - | chr5.2:33113238-33113257 | None:intergenic | 40.0% |
| ! | TCGATATGTCGGATACGTTT+TGG | + | chr5.2:33114200-33114219 | MS.gene55349:intron | 40.0% |
| !!! | TCTTATTTTGCAGCACATGC+TGG | + | chr5.2:33113787-33113806 | MS.gene55349:intron | 40.0% |
| ATCTAATGCATACACCGGAC+AGG | - | chr5.2:33114586-33114605 | None:intergenic | 45.0% | |
| ATGAATTTGTCCCTTGCCTC+TGG | - | chr5.2:33114786-33114805 | None:intergenic | 45.0% | |
| ATTCTTCTCTGGTCAACTCC+AGG | + | chr5.2:33113355-33113374 | MS.gene55349:CDS | 45.0% | |
| CGTTTGAGGAAGTCAATCTG+AGG | - | chr5.2:33113862-33113881 | None:intergenic | 45.0% | |
| CTCAAGCAGTTTCTTCACCA+GGG | - | chr5.2:33114043-33114062 | None:intergenic | 45.0% | |
| GCAATGTTGAAGGAGAAGGT+TGG | + | chr5.2:33114807-33114826 | MS.gene55349:CDS | 45.0% | |
| GGATTCATGTCAGGAATCAC+AGG | + | chr5.2:33113808-33113827 | MS.gene55349:CDS | 45.0% | |
| TCAAGCAGTTTCTTCACCAG+GGG | - | chr5.2:33114042-33114061 | None:intergenic | 45.0% | |
| ! | GAACAAGTACTGCTTACGAG+GGG | + | chr5.2:33114719-33114738 | MS.gene55349:CDS | 45.0% |
| ! | GAGAACAAGTACTGCTTACG+AGG | + | chr5.2:33114717-33114736 | MS.gene55349:CDS | 45.0% |
| ! | GCTGAGTTTTTCACAGAAGG+TGG | - | chr5.2:33113212-33113231 | None:intergenic | 45.0% |
| !! | AGTTGGTGATTGTTCAGCAG+AGG | + | chr5.2:33114752-33114771 | MS.gene55349:CDS | 45.0% |
| !! | GTTGGTGATTGTTCAGCAGA+GGG | + | chr5.2:33114753-33114772 | MS.gene55349:CDS | 45.0% |
| !! | TCACTCAATAGGTGTTGGCT+CGG | - | chr5.2:33114336-33114355 | None:intergenic | 45.0% |
| ACAGGACTAGAGTCTGTTCC+TGG | + | chr5.2:33113826-33113845 | MS.gene55349:CDS | 50.0% | |
| CAAAGAGAGACACCGCAACA+CGG | - | chr5.2:33114562-33114581 | None:intergenic | 50.0% | |
| GAGGCTCACTCAATAGGTGT+TGG | - | chr5.2:33114341-33114360 | None:intergenic | 50.0% | |
| GCACATGCTGGATTCATGTC+AGG | + | chr5.2:33113799-33113818 | MS.gene55349:intron | 50.0% | |
| GCTCAAGCAGTTTCTTCACC+AGG | - | chr5.2:33114044-33114063 | None:intergenic | 50.0% | |
| GTGTCCAAGACGTGTCTAAC+AGG | - | chr5.2:33114302-33114321 | None:intergenic | 50.0% | |
| GTGTCTCTCTTTGTCCTGTC+CGG | + | chr5.2:33114569-33114588 | MS.gene55349:intron | 50.0% | |
| ! | AAGTCAATCTGAGGCAGCTC+AGG | - | chr5.2:33113853-33113872 | None:intergenic | 50.0% |
| AGCAGAGGGAATGACTCCAG+AGG | + | chr5.2:33114767-33114786 | MS.gene55349:CDS | 55.0% | |
| AGGGAATGACTCCAGAGGCA+AGG | + | chr5.2:33114772-33114791 | MS.gene55349:CDS | 55.0% | |
| CGGACCTGTTAGACACGTCT+TGG | + | chr5.2:33114295-33114314 | MS.gene55349:intron | 55.0% | |
| GGGAATGACTCCAGAGGCAA+GGG | + | chr5.2:33114773-33114792 | MS.gene55349:CDS | 55.0% | |
| TTCGGACACAAGCCGTGTTG+CGG | + | chr5.2:33114547-33114566 | MS.gene55349:intron | 55.0% | |
| ! | CAAGTACTGCTTACGAGGGG+CGG | + | chr5.2:33114722-33114741 | MS.gene55349:CDS | 55.0% |
| ACTGCTTACGAGGGGCGGAA+TGG | + | chr5.2:33114727-33114746 | MS.gene55349:CDS | 60.0% | |
| CTGCTTACGAGGGGCGGAAT+GGG | + | chr5.2:33114728-33114747 | MS.gene55349:CDS | 60.0% | |
| TCGCAGGCAGCTGCAAGTGA+TGG | + | chr5.2:33114137-33114156 | MS.gene55349:intron | 60.0% | |
| TGCTTACGAGGGGCGGAATG+GGG | + | chr5.2:33114729-33114748 | MS.gene55349:CDS | 60.0% | |
| ! | ATCTGAGGCAGCTCAGGACC+AGG | - | chr5.2:33113847-33113866 | None:intergenic | 60.0% |
| CGAGGGGCGGAATGGGGAGT+TGG | + | chr5.2:33114735-33114754 | MS.gene55349:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 33113172 | 33114839 | 33113172 | ID=MS.gene55349 |
| chr5.2 | mRNA | 33113172 | 33114839 | 33113172 | ID=MS.gene55349.t1;Parent=MS.gene55349 |
| chr5.2 | exon | 33113172 | 33113376 | 33113172 | ID=MS.gene55349.t1.exon1;Parent=MS.gene55349.t1 |
| chr5.2 | CDS | 33113172 | 33113376 | 33113172 | ID=cds.MS.gene55349.t1;Parent=MS.gene55349.t1 |
| chr5.2 | exon | 33113800 | 33113889 | 33113800 | ID=MS.gene55349.t1.exon2;Parent=MS.gene55349.t1 |
| chr5.2 | CDS | 33113800 | 33113889 | 33113800 | ID=cds.MS.gene55349.t1;Parent=MS.gene55349.t1 |
| chr5.2 | exon | 33113989 | 33114085 | 33113989 | ID=MS.gene55349.t1.exon3;Parent=MS.gene55349.t1 |
| chr5.2 | CDS | 33113989 | 33114085 | 33113989 | ID=cds.MS.gene55349.t1;Parent=MS.gene55349.t1 |
| chr5.2 | exon | 33114701 | 33114839 | 33114701 | ID=MS.gene55349.t1.exon4;Parent=MS.gene55349.t1 |
| chr5.2 | CDS | 33114701 | 33114839 | 33114701 | ID=cds.MS.gene55349.t1;Parent=MS.gene55349.t1 |
| Gene Sequence |
| Protein sequence |
