AlfalfaGEDB | MS.gene64172

M. sativa cultivar XinJiangDaYe / MS.gene64172

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00076.25

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64172.t1	XP_003612875.1	84.6	286	44	0	1	286	1	286	8.00E-122	446.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64172.t1	Q9FGS0	36.2	177	109	3	98	273	115	288	2.8e-22	107.5

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64172.t1	G7KDR6	84.6	286	44	0	1	286	1	286	5.8e-122	446.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene64172	0.855076	8.04E-62	-1.69E-46
MS.gene049217	MS.gene64172	0.843591	1.28E-58	-1.69E-46
MS.gene049222	MS.gene64172	0.823416	1.40E-53	-1.69E-46
MS.gene049285	MS.gene64172	0.813166	2.94E-51	-1.69E-46
MS.gene049351	MS.gene64172	0.844336	8.05E-59	-1.69E-46
MS.gene049427	MS.gene64172	0.840922	6.50E-58	-1.69E-46
MS.gene049609	MS.gene64172	0.808203	3.48E-50	-1.69E-46
MS.gene049615	MS.gene64172	0.81565	8.29E-52	-1.69E-46
MS.gene049661	MS.gene64172	0.808603	2.86E-50	-1.69E-46
MS.gene049760	MS.gene64172	0.803971	2.70E-49	-1.69E-46

Showing 1 to 10 of 135 entries

Previous1 2 3 4 5…14Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene012058	MS.gene64172	PPI
MS.gene02482	MS.gene64172	PPI
MS.gene64172	MS.gene76448	PPI
MS.gene89616	MS.gene64172	PPI

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64172.t1	MTR_5g030020	90.554	307	27	2	1	306	1	306	1.46e-170	476
MS.gene64172.t1	MTR_7g106440	32.127	221	116	5	82	282	95	301	7.51e-32	120
MS.gene64172.t1	MTR_3g099590	32.567	261	141	5	50	308	62	289	3.64e-30	115
MS.gene64172.t1	MTR_1g056520	37.838	185	94	6	96	268	108	283	4.45e-30	116
MS.gene64172.t1	MTR_1g045510	35.000	180	110	3	93	271	110	283	3.09e-29	113
MS.gene64172.t1	MTR_3g075500	38.418	177	104	4	98	271	111	285	5.92e-29	112
MS.gene64172.t1	MTR_4g104470	32.961	179	116	3	98	275	124	299	9.61e-26	104
MS.gene64172.t1	MTR_3g075500	38.889	162	94	4	98	256	111	270	1.44e-25	103
MS.gene64172.t1	MTR_1g064230	27.413	259	151	7	46	274	27	278	2.42e-20	89.0
MS.gene64172.t1	MTR_3g027140	32.584	178	107	6	96	265	60	232	2.19e-18	82.8

Showing 1 to 10 of 24 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene64172.t1	AT2G35410	47.535	284	134	4	1	275	1	278	2.16e-80	246
MS.gene64172.t1	AT4G09040	36.898	187	112	2	95	278	33	216	5.18e-33	122
MS.gene64172.t1	AT5G50250	32.509	283	148	7	31	273	9	288	1.14e-32	122
MS.gene64172.t1	AT4G09040	36.898	187	112	2	95	278	93	276	2.78e-32	122
MS.gene64172.t1	AT4G24770	36.000	175	108	3	98	271	152	323	2.61e-28	112
MS.gene64172.t1	AT4G24770	36.000	175	108	3	98	271	152	323	2.61e-28	112
MS.gene64172.t1	AT3G52380	32.461	191	106	5	98	273	118	300	7.65e-28	110
MS.gene64172.t1	AT1G60000	31.443	194	124	4	82	271	68	256	1.02e-24	100
MS.gene64172.t1	AT2G37220	31.658	199	103	5	98	271	93	283	2.09e-24	100
MS.gene64172.t1	AT3G52150	30.415	217	129	7	59	265	46	250	1.68e-19	86.3

Showing 1 to 10 of 28 entries

Previous1 2 3Next

Find 68 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATCAGGCCGGATAGTA+AGG	0.395140	5.2:-18835297	MS.gene64172:CDS
AAGAAGAAAAGTGAAGTTTG+TGG	0.523665	5.2:+18837267	None:intergenic
AAGACAACCCTGGCTGAAAC+TGG	0.421042	5.2:+18835124	None:intergenic
AAGGATCTCTTCGCTCAATG+TGG	0.649377	5.2:-18837086	MS.gene64172:CDS
AAGGCAAGTTAAAGACAACG+AGG	0.810771	5.2:+18837132	None:intergenic
AATATCAGGCCGGATAGTAA+GGG	0.636833	5.2:-18835296	MS.gene64172:CDS
ACCCAGCAGATTTCCCACCA+GGG	0.675913	5.2:+18835095	None:intergenic
ACCCCTGGTGGGAAATCTGC+TGG	0.433529	5.2:-18835097	MS.gene64172:CDS
ACTCTGCTACGCTTTACAAG+AGG	0.635592	5.2:-18837225	MS.gene64172:CDS
ACTTCTTCACTTCCAGCTTC+TGG	0.261287	5.2:+18832152	None:intergenic

Showing 1 to 10 of 68 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAGAAAAGTGAAGTTTG+TGG	+	chr5.2:18832270-18832289	None:intergenic	30.0%
ACAGATAAATTGCATTTGCA+TGG	-	chr5.2:18835550-18835569	MS.gene64172:intron	30.0%
ACCACTTACTCTATTGATAT+AGG	-	chr5.2:18836170-18836189	MS.gene64172:intron	30.0%
ACTCTAGTGATCCTTAAAAT+CGG	-	chr5.2:18835281-18835300	MS.gene64172:CDS	30.0%
ACTGTCTTCAACTGTATAAA+TGG	-	chr5.2:18837211-18837230	MS.gene64172:CDS	30.0%
AGATTGTAAAGAGCAAAGAT+GGG	-	chr5.2:18832673-18832692	MS.gene64172:intron	30.0%
AGTAAAGAATGAAACCAGAT+AGG	+	chr5.2:18837153-18837172	None:intergenic	30.0%
AGTTATCATCTCATTGTTCA+TGG	-	chr5.2:18834529-18834548	MS.gene64172:intron	30.0%
ATGACATGATTAAGAGTTTG+TGG	-	chr5.2:18832581-18832600	MS.gene64172:intron	30.0%
CACAAAAGTTGAATGAGATA+TGG	+	chr5.2:18834178-18834197	None:intergenic	30.0%

Showing 1 to 10 of 353 entries

Previous1 2 3 4 5…36Next

Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	18832112	18837444	18832112	ID=MS.gene64172
chr5.2	mRNA	18832112	18837444	18832112	ID=MS.gene64172.t1;Parent=MS.gene64172
chr5.2	exon	18837067	18837444	18837067	ID=MS.gene64172.t1.exon1;Parent=MS.gene64172.t1
chr5.2	CDS	18837067	18837444	18837067	ID=cds.MS.gene64172.t1;Parent=MS.gene64172.t1
chr5.2	exon	18836783	18836881	18836783	ID=MS.gene64172.t1.exon2;Parent=MS.gene64172.t1
chr5.2	CDS	18836783	18836881	18836783	ID=cds.MS.gene64172.t1;Parent=MS.gene64172.t1
chr5.2	exon	18835030	18835320	18835030	ID=MS.gene64172.t1.exon3;Parent=MS.gene64172.t1
chr5.2	CDS	18835030	18835320	18835030	ID=cds.MS.gene64172.t1;Parent=MS.gene64172.t1
chr5.2	exon	18832112	18832270	18832112	ID=MS.gene64172.t1.exon4;Parent=MS.gene64172.t1
chr5.2	CDS	18832112	18832270	18832112	ID=cds.MS.gene64172.t1;Parent=MS.gene64172.t1

Gene Sequence

>MS.gene64172

ATGGCAACGTTAGAATCAACCATAACTGTATTCACACATCAACGTTTCTCAAATAACAACAACTACCATTTCCTAGCAAAATCACCAGATTCCATAAAACTCAATGCTTCAACTTCAATCTCTTCTTCTTCTTTTTCCCTTTTCTCTCACAATAACCACAAACTTCACTTTTCTTCTTCCTCTTCCAAATCCAAAACACTCTGCTACGCTTTACAAGAGGTAACAGAAGCAGCAGCAACAACTGAAGAAGATGAAGCAAAAACAGAGACATTGAACAACGTTAAGAAGAACCTCGTTGTCTTTAACTTGCCTTGGTCTCTTTCTAAGCCGGATATCAAGGATCTCTTCGCTCAATGTGGAACTGTAACCGACGTTGAGGTTGTTTCAAAATCTTTGTGTCATGTTTGTTTTAATTTTTGAATTTTTGGTTTTAATTTTCAATTAGTTTTTGTAATTCAGTGATTAATTTATGACATGATTAAGAGTTTGTGGTTAACATTTGAAGTTGTATACTACATGATTGTTTAATTTGGAGAAATGGGTGTTTGTGTATTATGTAGTAGATTGTAAAGAGCAAAGATGGGAAGGGAAAAGGTTATACATTTGTTACTATGGATTCAAGAGAGGAGGCTCAGGCTGCTGTCGATAAATTTAATGCAGCTGTAAGTCCTCGCATCTATTTTTATTTTATTTTTGGTGTATGTTTGTCTGTTCTGAATGGTGGCTCCAAAATAATGAATCTTCTTAATAATGGACATACACTGTGCAATGAAAGGATGCTCTAATGTAATAAACCAAAGAATCACATCATTTTGGAACTCTTGGAAGTCATGCAAATATAATTTAGAAACTTTTTTTAAAGGAAAATCTTAGTAAATTATTAGATTTGTTAGACGTCAGTGGAGATCGAGATTTGAACGTTGACCCCTTATGACTCGCAACTCCTTTATCCTATATTATCAACGACCAAACCACCCTTATGACTCCCACCCAGGGAGGTGTGTAACCCAGATGAAATGCTTATGAAGCATGGCACTTCTCCTTCTTGAGGTGTTAAGAGTCTCTAATGTGCTTTTAACACCAATACATGTACGCATGTGCCCAACACTCTCATTTCTTGTCTAATTAGATAATTAATTTTACTGGCTAACATGATTTGGACGCTTTTTTGACACTCAACTATGGCTTGGTACAGGACACATTTTGTTTAATATTTTCATAAAAGTCATCTTGAATATGAAAAAAATAGTTAATACTTGAAAAATGTCAAGAAAGTTCTTCAAAACACTTAATTTGCGATATAGTTCTTTCTCTACTCATCCCTGTGCCCCCACACATGTATGTATTTCGGGGGAATCACAAATCAGAGGAGATAGTCTTGATCACGCATACAAACAGATATGAGCAGTTAAGACTAACATCTCTAATACGCTTAATTCTGAATCTGATGTGTTCTATGTTTTAGATATTATTCATGTTAGTGTGTTTGTGCTAGTGTTGTGTCTGGTGTCCACAGTTGTCTTCGTGCTTCATAGTACTACTGTACAGACCTCTTATTTTCTATATTTGTTGCACTCACTAGTAATTACAAGAGACTTTGAAGTTTAGTTATTTGAGGTCCAGTTGAACATGCTATGCCAAAACATATGTTAATTTGGTTGGGACTATGGCACTATGTAGATTATTACTAAAATGTAAAAACTAGAGGTTAGACAGAGTAACTATGATTTCGTTAATGTTTTTCTTCCCTCAAAGAAGTGTGATATAATCACATGATTTTAATGCACACGACCAGAAATTCATAACATAAATAATCTTATCACCTAAAAGGGATTTAGCCTATTAAAAAAATACTACCTAAAAGGGAAGTTATGTCACTCTGCGGTGGCATGTAGTAGGATCTCCTTTAAAATGTCCATTTTAGTTTCCTTTCTGTATATGTTATATCTCTAGCAAAAAACTTCCAACGGACTAAACTAAGCTCCAGGAATAGAGATGATGCTTTGAAATATCTTAACTAGTGTCCGAAGTTGAATGAAAAATGAATATAAAAATATTGGTTTCCATATCTCATTCAACTTTTGTGTGGCTATTATTTTAATGACATCTAATTGTGTGGTTCAGGAAATATCAGGCCGGATAGTAAGGGTAGAGTTTGCAAAGGGATTTAAGAAACCTCCTCCACCTCCTCCAGCTCCCACTCCTAAGGAAGCACGTTATGTAATCTATGCATCCAACCTTGCGTGGAAAGCAAGATCTACACATCTCAGAGACATCTTCACTGAGAATTTCAAAACACCAGTTTCAGCCAGGGTTGTCTTTCAAACCCCTGGTGGGAAATCTGCTGGGTATGGATTTGTTTCTTATCATACGGAGGAGGAAGCAGAAGCTGCCATTTCTGCTTTGCAAGGGAAGGTAGTTATCATCTCATTGTTCATGGTCACTTCCTCTGCTATTTATTTACATATGTTGAATGATTTTCAATTTCGTGATTGATCTAAATTTATTGTGTTTGACTTTTGGAGACAATTTGATATTAATGGCTTTGAAAAGCCTTGTTGAAAAAAATCTTTAATCTTGAATTGAAATGTTTAAAGATTATGCAGTGATAGTATAATTTTTATTTACACAACCATCCAATATTTTCTCGCCATGTAGCTATTTCTCAGGGTATTTTAGGAAGTAATATAATAACATGACACCATTGTGAGATATCATTGGAAGATTTATAAAACTGTTTTTACACCATTAGTCTATAATCTTTAAACACTTGAAATTATTTTGATTTTTGTATCTTTAAGCAGAACTTTAGGTTGCATTTTTATGTTCAAGATATGTATTTTATGGTTTTCTTGAATACGATCACACTCTACATAAATAAGACTCGATAATATTGTTTGGATTTGGATGGCCAAACTATACTTGGCTATTTGAGTGTCTAGGTTATAGCTGCATTGGTTTTGTAGTGTTTTGAGTGGTTGGATATATGGTAATAAGAATAGAAATGATTTTACTTATATAAGCATACAATTTTTGTGGAGATATAAAGGATAAATATGGATGCTTCTACCGACATATCAAAGCACCAATAAACGTCCACCACCTTCTGATTTTCACTTAGCTTGTTACTACTGCCTTTACTTTTCTACATTTATCTACACAAATTTTGACTCTAGTGATCCTTAAAATCGGATTTTCAATTATTGCTTCCCCGTGTTTCTTTTTCATAATTTTGGGTCAGAGTAAATGGTTTCACTTGCATTGCATCTACCAGTATTTTCTGCACCAATATGTTTTCACGGTGCTTTTGTTTTAAACTAGGCATTATTTTGAATGATTGTTAAGCTCAGCTATGTAGGTGCCTTTGGAAAATGCTGCTGCATCACAATGACGCTAGGCGTCAATTGAGATAGAAGTGGAATAAACAGCATGTCTTAAACAGATAAATTGCATTTGCATGGACAAGTAATTAAATTATTTGAATTTTGCAATTGTTCATAAGTTCTATAAAATAGATGCTGTAGTAGAGGCCTGAATTTCATATCCGAAGGAGTTAGAAGAAGCATCTGTGTATTCAGGGGCAGAGCTTCTTAGGGATATAGGGTGGCCGCGATCACCTCAACAATTTTAATGTTATAAACCCTAACCCAGGAAACTCATTTTGCATGTCTCCCCAGTACTGCACCCTCCGTCTACCCACTGCGTTTGCGTCCTGTCGTGACCACTCTGACCCTTTGCGTATGCGCTGCATTGTTCGTGCTCCAACATGTGTCATTGATCGTCTAGCTCTGTGTGCGCGATGCGCCGTTCTCCCTTTGAATCTGCCTCTCCTCTGCGCGTGCTTCGTGGTTCATCGTACTCCCTCTGATTCAACCAAAACTATAAACATGAAGTTTTTTACTAACAAAGCACATAAGGGAAAGAAGGATCAAATGAATTAAATATTACTGCTCTTTGAGGGTTTTGCTTAGGCAATGCAATTTTTCTTGTGCAGCGGTTGTTCTGCCTGCCTTAATCCTATTGGCGGTATTTCATGCGGTTTTGATGGGAATAGTGTTACCACTTACTCTATTGATATAGGCTTGAATTTTGCAAACAAGGTGTTTGTTGTGATACAATGAATTTGGTTATGTTGGTTTTGACTTGAGCACGTTTCTGATGATTTTAACATGCCTGCAAGTGTGTCATGTAGTTGAAAATTGGGTGCATATGTGACTAATACGGCTATGGTGGTAAGAATGTGGGCTTGGTGGATGCATCATAAGGAGTTGGGAGGGTCTGCAATATGCCAGTGAAAGGGAAAGCATCAGTGTGAGTAAAAACCAATTGAGGCTTATGGAAAAGAGTGGGGACATAGGGTTGGATAAGTATTGCGCTGTAGTGATGGAGTTATCTTCATAGTGTTTTCCTTTTACTGTATGGTAATTTTTTCCTTATATAGAAGTGAAATGGCACTACGGTGAACAAGGAGGTAAACATATAGTTTGCTAGTGCAGTGGTGACTAGTTACTTTAATTGAGCTGAGAGGATAAGGTGTGTGTATGGATTTGATATAGTTATTGTATAGGAGGAGTTTGGTAGTAAGTTTTGAGTCGACTTATTAAGAAATTTAATGTTATGGTGTTACTGTTATGTTATATATGTATTAGAACAGATAGAAAATGTAGAAACAATGGGTGATACATTCTTCTATTATAGTATGGAGCTCACTTTACTAGTGTACTGAGATACAGGTCATGTCTGAGAGCATTGTCTACTAAAGCGCGCTATTTGTGGTAGCTATTATATTTAATATATTTTTCCTCTTTAACAAAATGCTTGCAAGTAGATATTATTTGTTGAGGATGCATGATTTCTTTTTGGTTGAATAAAAAATCATATGAATAGGCTTGTCTTAAAGGTGTTTAAAAGATTTATTTAGTATGCACTTAGATGTGCATGTAGCATGCTTAATTTTTATTTGGATTGTGGAAGTTCATTTTTATACACAACTTGGCACCCCCAAGTGTGTTATTGAAGCTCCGTCATTGTGTGTATTCCTATCTGGTTTCATTCTTTACTTATTTCAGCTTTTCCTTTTGTTTGTTTGTTCTGAAGTTACTGTCTTCAACTGTATAAATGGGATTGATTCATTCTAAAGAAAAGTTATTTATCTGTTACCTATCCCTTTGCAGGAGTTACTTGGACGACCACTTCTCGTAAAAATAAGTGAAAAAAAAGTTAAAGAAGCTGGAAGTGAAGTAGTTGAAGAGAAAGTTGACGACGCGCAACCAGAAGCTGGAAGTGAAGAAGTTGAAGAGAAAGTTGATGACGCTCAACCAGATGAGTCATAA

Protein sequence

>MS.gene64172.t1

MATLESTITVFTHQRFSNNNNYHFLAKSPDSIKLNASTSISSSSFSLFSHNNHKLHFSSSSSKSKTLCYALQEVTEAAATTEEDEAKTETLNNVKKNLVVFNLPWSLSKPDIKDLFAQCGTVTDVEIVKSKDGKGKGYTFVTMDSREEAQAAVDKFNAAEISGRIVRVEFAKGFKKPPPPPPAPTPKEARYVIYASNLAWKARSTHLRDIFTENFKTPVSARVVFQTPGGKSAGYGFVSYHTEEEAEAAISALQGKELLGRPLLVKISEKKVKEAGSEVVEEKVDDAQPEAGSEEVEEKVDDAQPDES