Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64922.t1 | XP_003606586.1 | 96.5 | 427 | 14 | 1 | 1 | 426 | 46 | 472 | 5.20E-236 | 826.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64922.t1 | Q9SIB2 | 72.3 | 429 | 112 | 3 | 1 | 423 | 46 | 473 | 1.3e-182 | 640.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64922.t1 | G7JSN8 | 96.5 | 427 | 14 | 1 | 1 | 426 | 46 | 472 | 3.7e-236 | 826.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene64922 | 0.826879 | 2.13E-54 | -1.69E-46 |
| MS.gene049217 | MS.gene64922 | 0.831568 | 1.55E-55 | -1.69E-46 |
| MS.gene049351 | MS.gene64922 | 0.82885 | 7.15E-55 | -1.69E-46 |
| MS.gene049427 | MS.gene64922 | 0.831566 | 1.55E-55 | -1.69E-46 |
| MS.gene049488 | MS.gene64922 | 0.814144 | 1.79E-51 | -1.69E-46 |
| MS.gene049491 | MS.gene64922 | 0.822428 | 2.38E-53 | -1.69E-46 |
| MS.gene049614 | MS.gene64922 | 0.81601 | 6.89E-52 | -1.69E-46 |
| MS.gene049661 | MS.gene64922 | 0.852416 | 4.68E-61 | -1.69E-46 |
| MS.gene049662 | MS.gene64922 | 0.831638 | 1.49E-55 | -1.69E-46 |
| MS.gene049805 | MS.gene64922 | 0.850714 | 1.42E-60 | -1.69E-46 |
| MS.gene050076 | MS.gene64922 | 0.851811 | 6.96E-61 | -1.69E-46 |
| MS.gene050163 | MS.gene64922 | 0.816132 | 6.47E-52 | -1.69E-46 |
| MS.gene050397 | MS.gene64922 | 0.816067 | 6.69E-52 | -1.69E-46 |
| MS.gene050432 | MS.gene64922 | 0.809461 | 1.87E-50 | -1.69E-46 |
| MS.gene05053 | MS.gene64922 | 0.805231 | 1.48E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene64922 | 0.806408 | 8.35E-50 | -1.69E-46 |
| MS.gene050767 | MS.gene64922 | 0.838882 | 2.21E-57 | -1.69E-46 |
| MS.gene050770 | MS.gene64922 | 0.841254 | 5.31E-58 | -1.69E-46 |
| MS.gene050772 | MS.gene64922 | 0.821932 | 3.10E-53 | -1.69E-46 |
| MS.gene05100 | MS.gene64922 | 0.814211 | 1.73E-51 | -1.69E-46 |
| MS.gene05101 | MS.gene64922 | 0.842354 | 2.72E-58 | -1.69E-46 |
| MS.gene05105 | MS.gene64922 | 0.820069 | 8.33E-53 | -1.69E-46 |
| MS.gene051228 | MS.gene64922 | 0.800088 | 1.70E-48 | -1.69E-46 |
| MS.gene051387 | MS.gene64922 | 0.838239 | 3.24E-57 | -1.69E-46 |
| MS.gene051471 | MS.gene64922 | 0.814003 | 1.92E-51 | -1.69E-46 |
| MS.gene051666 | MS.gene64922 | 0.830934 | 2.22E-55 | -1.69E-46 |
| MS.gene051692 | MS.gene64922 | 0.855631 | 5.54E-62 | -1.69E-46 |
| MS.gene051694 | MS.gene64922 | 0.807375 | 5.21E-50 | -1.69E-46 |
| MS.gene051858 | MS.gene64922 | 0.821612 | 3.68E-53 | -1.69E-46 |
| MS.gene051877 | MS.gene64922 | 0.815548 | 8.74E-52 | -1.69E-46 |
| MS.gene052078 | MS.gene64922 | 0.822855 | 1.90E-53 | -1.69E-46 |
| MS.gene052271 | MS.gene64922 | 0.873275 | 1.67E-67 | -1.69E-46 |
| MS.gene052290 | MS.gene64922 | 0.862278 | 5.68E-64 | -1.69E-46 |
| MS.gene052310 | MS.gene64922 | 0.834807 | 2.42E-56 | -1.69E-46 |
| MS.gene052322 | MS.gene64922 | 0.830457 | 2.91E-55 | -1.69E-46 |
| MS.gene052326 | MS.gene64922 | 0.831052 | 2.08E-55 | -1.69E-46 |
| MS.gene052340 | MS.gene64922 | 0.805241 | 1.47E-49 | -1.69E-46 |
| MS.gene052379 | MS.gene64922 | 0.841826 | 3.76E-58 | -1.69E-46 |
| MS.gene052421 | MS.gene64922 | 0.826924 | 2.08E-54 | -1.69E-46 |
| MS.gene052484 | MS.gene64922 | 0.813737 | 2.20E-51 | -1.69E-46 |
| MS.gene052485 | MS.gene64922 | 0.821259 | 4.44E-53 | -1.69E-46 |
| MS.gene052615 | MS.gene64922 | 0.825638 | 4.20E-54 | -1.69E-46 |
| MS.gene053009 | MS.gene64922 | 0.814755 | 1.31E-51 | -1.69E-46 |
| MS.gene053103 | MS.gene64922 | 0.84282 | 2.05E-58 | -1.69E-46 |
| MS.gene053104 | MS.gene64922 | 0.824362 | 8.41E-54 | -1.69E-46 |
| MS.gene053213 | MS.gene64922 | 0.826143 | 3.19E-54 | -1.69E-46 |
| MS.gene053286 | MS.gene64922 | 0.812501 | 4.11E-51 | -1.69E-46 |
| MS.gene053322 | MS.gene64922 | 0.876868 | 9.91E-69 | -1.69E-46 |
| MS.gene053449 | MS.gene64922 | 0.800507 | 1.40E-48 | -1.69E-46 |
| MS.gene053632 | MS.gene64922 | 0.839582 | 1.45E-57 | -1.69E-46 |
| MS.gene053813 | MS.gene64922 | 0.862801 | 3.92E-64 | -1.69E-46 |
| MS.gene053873 | MS.gene64922 | 0.800068 | 1.71E-48 | -1.69E-46 |
| MS.gene053915 | MS.gene64922 | 0.800551 | 1.37E-48 | -1.69E-46 |
| MS.gene054123 | MS.gene64922 | 0.816403 | 5.63E-52 | -1.69E-46 |
| MS.gene054376 | MS.gene64922 | 0.842661 | 2.26E-58 | -1.69E-46 |
| MS.gene054642 | MS.gene64922 | 0.813585 | 2.38E-51 | -1.69E-46 |
| MS.gene054802 | MS.gene64922 | 0.851031 | 1.16E-60 | -1.69E-46 |
| MS.gene054803 | MS.gene64922 | 0.850944 | 1.22E-60 | -1.69E-46 |
| MS.gene054804 | MS.gene64922 | 0.85392 | 1.74E-61 | -1.69E-46 |
| MS.gene054955 | MS.gene64922 | 0.808913 | 2.45E-50 | -1.69E-46 |
| MS.gene05505 | MS.gene64922 | 0.828264 | 9.90E-55 | -1.69E-46 |
| MS.gene055116 | MS.gene64922 | 0.805045 | 1.61E-49 | -1.69E-46 |
| MS.gene055206 | MS.gene64922 | 0.816045 | 6.77E-52 | -1.69E-46 |
| MS.gene055254 | MS.gene64922 | 0.825622 | 4.24E-54 | -1.69E-46 |
| MS.gene055277 | MS.gene64922 | 0.838493 | 2.78E-57 | -1.69E-46 |
| MS.gene055397 | MS.gene64922 | 0.846473 | 2.12E-59 | -1.69E-46 |
| MS.gene055412 | MS.gene64922 | 0.817467 | 3.25E-52 | -1.69E-46 |
| MS.gene055422 | MS.gene64922 | 0.800598 | 1.34E-48 | -1.69E-46 |
| MS.gene055428 | MS.gene64922 | 0.815471 | 9.09E-52 | -1.69E-46 |
| MS.gene055499 | MS.gene64922 | 0.885058 | 1.13E-71 | -1.69E-46 |
| MS.gene055647 | MS.gene64922 | 0.838857 | 2.24E-57 | -1.69E-46 |
| MS.gene055896 | MS.gene64922 | 0.804575 | 2.02E-49 | -1.69E-46 |
| MS.gene05592 | MS.gene64922 | 0.84391 | 1.05E-58 | -1.69E-46 |
| MS.gene055941 | MS.gene64922 | 0.809605 | 1.74E-50 | -1.69E-46 |
| MS.gene056191 | MS.gene64922 | 0.862465 | 4.97E-64 | -1.69E-46 |
| MS.gene056374 | MS.gene64922 | 0.836293 | 1.02E-56 | -1.69E-46 |
| MS.gene056407 | MS.gene64922 | 0.808705 | 2.72E-50 | -1.69E-46 |
| MS.gene056410 | MS.gene64922 | 0.823639 | 1.24E-53 | -1.69E-46 |
| MS.gene056511 | MS.gene64922 | 0.801731 | 7.84E-49 | -1.69E-46 |
| MS.gene056609 | MS.gene64922 | 0.839464 | 1.56E-57 | -1.69E-46 |
| MS.gene056657 | MS.gene64922 | 0.807324 | 5.34E-50 | -1.69E-46 |
| MS.gene056942 | MS.gene64922 | 0.837999 | 3.73E-57 | -1.69E-46 |
| MS.gene057011 | MS.gene64922 | 0.819481 | 1.14E-52 | -1.69E-46 |
| MS.gene05702 | MS.gene64922 | 0.830902 | 2.26E-55 | -1.69E-46 |
| MS.gene057123 | MS.gene64922 | 0.856378 | 3.35E-62 | -1.69E-46 |
| MS.gene057129 | MS.gene64922 | 0.861708 | 8.48E-64 | -1.69E-46 |
| MS.gene057146 | MS.gene64922 | 0.86828 | 7.34E-66 | -1.69E-46 |
| MS.gene057285 | MS.gene64922 | 0.813524 | 2.45E-51 | -1.69E-46 |
| MS.gene057295 | MS.gene64922 | 0.848746 | 5.04E-60 | -1.69E-46 |
| MS.gene05733 | MS.gene64922 | 0.83649 | 9.08E-57 | -1.69E-46 |
| MS.gene057416 | MS.gene64922 | 0.862077 | 6.54E-64 | -1.69E-46 |
| MS.gene057749 | MS.gene64922 | 0.825445 | 4.67E-54 | -1.69E-46 |
| MS.gene057823 | MS.gene64922 | 0.825812 | 3.82E-54 | -1.69E-46 |
| MS.gene057926 | MS.gene64922 | 0.809378 | 1.95E-50 | -1.69E-46 |
| MS.gene058006 | MS.gene64922 | 0.832911 | 7.22E-56 | -1.69E-46 |
| MS.gene058019 | MS.gene64922 | 0.848554 | 5.69E-60 | -1.69E-46 |
| MS.gene058233 | MS.gene64922 | 0.81232 | 4.50E-51 | -1.69E-46 |
| MS.gene058293 | MS.gene64922 | 0.824261 | 8.89E-54 | -1.69E-46 |
| MS.gene058419 | MS.gene64922 | 0.816509 | 5.33E-52 | -1.69E-46 |
| MS.gene058660 | MS.gene64922 | 0.886841 | 2.41E-72 | -1.69E-46 |
| MS.gene058903 | MS.gene64922 | 0.802361 | 5.82E-49 | -1.69E-46 |
| MS.gene058928 | MS.gene64922 | 0.818677 | 1.73E-52 | -1.69E-46 |
| MS.gene059029 | MS.gene64922 | 0.803627 | 3.19E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene64922 | 0.814341 | 1.62E-51 | -1.69E-46 |
| MS.gene05934 | MS.gene64922 | 0.807321 | 5.35E-50 | -1.69E-46 |
| MS.gene059455 | MS.gene64922 | 0.80042 | 1.45E-48 | -1.69E-46 |
| MS.gene059536 | MS.gene64922 | 0.873521 | 1.38E-67 | -1.69E-46 |
| MS.gene059597 | MS.gene64922 | 0.825515 | 4.49E-54 | -1.69E-46 |
| MS.gene059676 | MS.gene64922 | 0.82152 | 3.87E-53 | -1.69E-46 |
| MS.gene059688 | MS.gene64922 | 0.831732 | 1.41E-55 | -1.69E-46 |
| MS.gene059692 | MS.gene64922 | 0.827143 | 1.84E-54 | -1.69E-46 |
| MS.gene059695 | MS.gene64922 | 0.82903 | 6.46E-55 | -1.69E-46 |
| MS.gene059711 | MS.gene64922 | 0.815223 | 1.03E-51 | -1.69E-46 |
| MS.gene059718 | MS.gene64922 | 0.801674 | 8.06E-49 | -1.69E-46 |
| MS.gene059902 | MS.gene64922 | 0.822841 | 1.91E-53 | -1.69E-46 |
| MS.gene059960 | MS.gene64922 | 0.862254 | 5.77E-64 | -1.69E-46 |
| MS.gene060005 | MS.gene64922 | 0.803052 | 4.19E-49 | -1.69E-46 |
| MS.gene060403 | MS.gene64922 | 0.819312 | 1.24E-52 | -1.69E-46 |
| MS.gene060727 | MS.gene64922 | 0.801901 | 7.24E-49 | -1.69E-46 |
| MS.gene060804 | MS.gene64922 | 0.851387 | 9.17E-61 | -1.69E-46 |
| MS.gene060818 | MS.gene64922 | 0.843063 | 1.76E-58 | -1.69E-46 |
| MS.gene061041 | MS.gene64922 | 0.837998 | 3.73E-57 | -1.69E-46 |
| MS.gene061049 | MS.gene64922 | 0.818029 | 2.43E-52 | -1.69E-46 |
| MS.gene061051 | MS.gene64922 | -0.808468 | 3.05E-50 | -1.69E-46 |
| MS.gene061134 | MS.gene64922 | 0.808795 | 2.60E-50 | -1.69E-46 |
| MS.gene061200 | MS.gene64922 | 0.883605 | 3.90E-71 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64922.t1 | MTR_4g062170 | 96.487 | 427 | 14 | 1 | 1 | 426 | 46 | 472 | 0.0 | 845 |
| MS.gene64922.t1 | MTR_4g062270 | 88.967 | 426 | 40 | 1 | 1 | 426 | 46 | 464 | 0.0 | 788 |
| MS.gene64922.t1 | MTR_4g062190 | 85.748 | 428 | 59 | 1 | 1 | 426 | 46 | 473 | 0.0 | 741 |
| MS.gene64922.t1 | MTR_2g096210 | 71.294 | 425 | 116 | 3 | 2 | 421 | 47 | 470 | 0.0 | 637 |
| MS.gene64922.t1 | MTR_1g115560 | 56.057 | 421 | 175 | 2 | 2 | 412 | 48 | 468 | 1.03e-179 | 510 |
| MS.gene64922.t1 | MTR_7g118170 | 42.785 | 395 | 204 | 5 | 9 | 395 | 145 | 525 | 8.29e-111 | 336 |
| MS.gene64922.t1 | MTR_5g056510 | 41.600 | 375 | 205 | 4 | 23 | 395 | 125 | 487 | 2.32e-105 | 321 |
| MS.gene64922.t1 | MTR_3g105550 | 39.796 | 392 | 227 | 3 | 9 | 395 | 146 | 533 | 1.09e-103 | 318 |
| MS.gene64922.t1 | MTR_4g070270 | 40.816 | 392 | 215 | 5 | 9 | 395 | 120 | 499 | 1.33e-103 | 317 |
| MS.gene64922.t1 | MTR_1g076430 | 43.200 | 375 | 198 | 4 | 24 | 395 | 141 | 503 | 1.93e-103 | 317 |
| MS.gene64922.t1 | MTR_1g110930 | 40.533 | 375 | 209 | 4 | 23 | 395 | 125 | 487 | 3.28e-103 | 315 |
| MS.gene64922.t1 | MTR_2g054940 | 42.400 | 375 | 201 | 4 | 24 | 395 | 140 | 502 | 9.91e-102 | 312 |
| MS.gene64922.t1 | MTR_7g118160 | 45.820 | 323 | 154 | 2 | 78 | 395 | 110 | 416 | 2.57e-101 | 308 |
| MS.gene64922.t1 | MTR_1g041085 | 41.818 | 385 | 209 | 4 | 14 | 395 | 137 | 509 | 6.84e-101 | 310 |
| MS.gene64922.t1 | MTR_4g054415 | 38.442 | 398 | 224 | 7 | 7 | 395 | 37 | 422 | 1.53e-95 | 293 |
| MS.gene64922.t1 | MTR_4g054630 | 38.442 | 398 | 224 | 7 | 7 | 395 | 78 | 463 | 2.99e-95 | 294 |
| MS.gene64922.t1 | MTR_4g113280 | 40.160 | 376 | 199 | 5 | 23 | 395 | 128 | 480 | 9.86e-95 | 293 |
| MS.gene64922.t1 | MTR_6g074880 | 40.160 | 376 | 209 | 5 | 24 | 395 | 102 | 465 | 1.75e-94 | 292 |
| MS.gene64922.t1 | MTR_2g007020 | 40.800 | 375 | 207 | 4 | 24 | 395 | 86 | 448 | 1.50e-93 | 289 |
| MS.gene64922.t1 | MTR_7g081695 | 41.600 | 375 | 192 | 5 | 24 | 395 | 140 | 490 | 3.35e-93 | 297 |
| MS.gene64922.t1 | MTR_6g032965 | 37.965 | 403 | 232 | 6 | 10 | 406 | 2 | 392 | 1.02e-91 | 282 |
| MS.gene64922.t1 | MTR_2g436480 | 38.503 | 374 | 218 | 4 | 24 | 395 | 85 | 448 | 3.69e-90 | 280 |
| MS.gene64922.t1 | MTR_2g013740 | 38.503 | 374 | 213 | 3 | 9 | 381 | 135 | 492 | 4.32e-87 | 274 |
| MS.gene64922.t1 | MTR_1g102290 | 37.234 | 376 | 220 | 6 | 24 | 395 | 120 | 483 | 6.27e-79 | 252 |
| MS.gene64922.t1 | MTR_3g072980 | 34.933 | 375 | 228 | 4 | 24 | 395 | 121 | 482 | 3.56e-74 | 240 |
| MS.gene64922.t1 | MTR_3g072940 | 34.933 | 375 | 228 | 4 | 24 | 395 | 121 | 482 | 3.79e-74 | 240 |
| MS.gene64922.t1 | MTR_6g051440 | 34.933 | 375 | 228 | 4 | 24 | 395 | 120 | 481 | 6.77e-69 | 226 |
| MS.gene64922.t1 | MTR_4g054260 | 37.597 | 258 | 129 | 5 | 142 | 395 | 93 | 322 | 2.60e-51 | 176 |
| MS.gene64922.t1 | MTR_4g053905 | 40.764 | 157 | 79 | 3 | 242 | 395 | 11 | 156 | 1.24e-36 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64922.t1 | AT2G28630 | 72.261 | 429 | 112 | 3 | 1 | 423 | 46 | 473 | 0.0 | 640 |
| MS.gene64922.t1 | AT2G28630 | 72.261 | 429 | 112 | 3 | 1 | 423 | 46 | 473 | 0.0 | 640 |
| MS.gene64922.t1 | AT1G07720 | 70.602 | 432 | 116 | 3 | 1 | 423 | 89 | 518 | 0.0 | 627 |
| MS.gene64922.t1 | AT1G07720 | 70.602 | 432 | 116 | 3 | 1 | 423 | 46 | 475 | 0.0 | 626 |
| MS.gene64922.t1 | AT5G04530 | 55.314 | 414 | 175 | 3 | 2 | 412 | 49 | 455 | 5.52e-177 | 503 |
| MS.gene64922.t1 | AT1G01120 | 42.597 | 385 | 199 | 6 | 20 | 397 | 156 | 525 | 7.92e-110 | 333 |
| MS.gene64922.t1 | AT2G16280 | 43.501 | 377 | 199 | 4 | 23 | 397 | 145 | 509 | 1.04e-106 | 325 |
| MS.gene64922.t1 | AT1G19440 | 41.388 | 389 | 208 | 5 | 12 | 395 | 138 | 511 | 1.37e-105 | 322 |
| MS.gene64922.t1 | AT1G25450 | 42.400 | 375 | 202 | 4 | 23 | 395 | 121 | 483 | 2.28e-105 | 321 |
| MS.gene64922.t1 | AT2G46720 | 42.063 | 378 | 202 | 4 | 23 | 395 | 97 | 462 | 1.44e-104 | 318 |
| MS.gene64922.t1 | AT4G34510 | 42.216 | 379 | 202 | 4 | 23 | 397 | 119 | 484 | 3.74e-104 | 318 |
| MS.gene64922.t1 | AT1G68530 | 40.800 | 375 | 208 | 4 | 23 | 395 | 126 | 488 | 8.47e-103 | 314 |
| MS.gene64922.t1 | AT1G04220 | 41.013 | 395 | 210 | 6 | 13 | 395 | 129 | 512 | 1.22e-102 | 315 |
| MS.gene64922.t1 | AT5G43760 | 42.025 | 395 | 205 | 7 | 13 | 395 | 135 | 517 | 7.80e-102 | 313 |
| MS.gene64922.t1 | AT2G26640 | 41.953 | 379 | 205 | 4 | 20 | 395 | 134 | 500 | 2.67e-101 | 311 |
| MS.gene64922.t1 | AT2G15090 | 40.476 | 378 | 203 | 6 | 24 | 395 | 115 | 476 | 8.43e-99 | 303 |
| MS.gene64922.t1 | AT4G34250 | 41.379 | 377 | 201 | 6 | 24 | 395 | 123 | 484 | 1.63e-98 | 303 |
| MS.gene64922.t1 | AT3G10280 | 40.741 | 378 | 200 | 5 | 23 | 395 | 97 | 455 | 2.57e-98 | 301 |
| MS.gene64922.t1 | AT4G34520 | 40.306 | 392 | 212 | 5 | 14 | 397 | 112 | 489 | 1.09e-97 | 301 |
| MS.gene64922.t1 | AT2G26250 | 37.037 | 405 | 236 | 4 | 9 | 395 | 144 | 547 | 5.26e-96 | 298 |
| MS.gene64922.t1 | AT5G49070 | 39.733 | 375 | 212 | 5 | 24 | 395 | 89 | 452 | 7.45e-92 | 285 |
| MS.gene64922.t1 | AT1G71160 | 38.005 | 371 | 215 | 4 | 27 | 395 | 88 | 445 | 1.27e-90 | 282 |
| MS.gene64922.t1 | AT3G52160 | 34.831 | 356 | 189 | 3 | 27 | 382 | 16 | 328 | 4.92e-74 | 235 |
| MS.gene64922.t1 | AT3G52160 | 34.831 | 356 | 189 | 3 | 27 | 382 | 129 | 441 | 1.06e-72 | 235 |
| MS.gene64922.t1 | AT1G68530 | 37.885 | 227 | 140 | 1 | 23 | 249 | 126 | 351 | 2.87e-53 | 182 |
| MS.gene64922.t1 | AT5G49070 | 32.444 | 225 | 151 | 1 | 24 | 248 | 89 | 312 | 1.86e-34 | 130 |
Find 74 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTCTTTGTTGACAATTTA+AGG | 0.088298 | 4.4:-43208995 | MS.gene64922:CDS |
| TTCCCTTGTTGGCAAAATTT+TGG | 0.124989 | 4.4:+43208962 | None:intergenic |
| AATCAGAAGAACCAAGAATT+TGG | 0.151534 | 4.4:-43209675 | MS.gene64922:CDS |
| AAGAAATAAGTTAGCACTTT+TGG | 0.201713 | 4.4:-43209285 | MS.gene64922:CDS |
| TCAAATGCAATAGTTGCTTA+TGG | 0.231406 | 4.4:-43208602 | MS.gene64922:CDS |
| CGGCCTTCAAAGACGTTTCT+TGG | 0.235577 | 4.4:+43209584 | None:intergenic |
| TCATTGCCAGTGTACCAATT+TGG | 0.263580 | 4.4:+43209242 | None:intergenic |
| CTCATCTATACCCAAATTCT+TGG | 0.300676 | 4.4:+43209664 | None:intergenic |
| TAATTATCCACCAAAGTCTT+TGG | 0.310010 | 4.4:-43208529 | MS.gene64922:CDS |
| GGTAGCTTGTGGTATGTGTT+AGG | 0.324055 | 4.4:-43208693 | MS.gene64922:CDS |
| AACCTAAGCAATTCCCTTGT+TGG | 0.324150 | 4.4:+43208951 | None:intergenic |
| GTCTTTGGTCAATTCTTTCA+TGG | 0.348215 | 4.4:-43208514 | MS.gene64922:CDS |
| CTCAAAGCCATTGTAAGTTC+TGG | 0.351294 | 4.4:-43209629 | MS.gene64922:CDS |
| CAGAGTCTCTTAGTCCAAAT+TGG | 0.358921 | 4.4:-43209256 | MS.gene64922:CDS |
| CGATGTAGTGTCATCCTTGC+TGG | 0.365030 | 4.4:+43208735 | None:intergenic |
| CAAATGCAATAGTTGCTTAT+GGG | 0.367150 | 4.4:-43208601 | MS.gene64922:CDS |
| AGATCCCGTCGTTCAGTGTT+GGG | 0.368292 | 4.4:+43209552 | None:intergenic |
| AGTCTTTGTTGACAATTTAA+GGG | 0.369626 | 4.4:-43208994 | MS.gene64922:CDS |
| AAAGCAGTGATTGATGGAAT+TGG | 0.371201 | 4.4:-43208792 | MS.gene64922:CDS |
| ATCAGAAGAACCAAGAATTT+GGG | 0.381600 | 4.4:-43209674 | MS.gene64922:CDS |
| TCACCATTGAATTTCAAAAC+TGG | 0.383289 | 4.4:-43208846 | MS.gene64922:CDS |
| TACCTTCACTTGAGAAAGTC+AGG | 0.413091 | 4.4:+43208441 | None:intergenic |
| GGAGGAAAAGCAGTGATTGA+TGG | 0.414329 | 4.4:-43208798 | MS.gene64922:CDS |
| AGGATGACACTACATCGTTT+TGG | 0.417938 | 4.4:-43208729 | MS.gene64922:CDS |
| CAGAACTTACAATGGCTTTG+AGG | 0.424498 | 4.4:+43209630 | None:intergenic |
| TGCCAACAAGGGAATTGCTT+AGG | 0.432387 | 4.4:-43208953 | MS.gene64922:CDS |
| TTACAATTGTTGCATTCAAA+AGG | 0.434595 | 4.4:-43209078 | MS.gene64922:CDS |
| AGTTCTTCTAAGTCTTCAAC+TGG | 0.436663 | 4.4:-43208888 | MS.gene64922:CDS |
| TGTTGAAGATGCAAATGTTT+GGG | 0.442098 | 4.4:-43208565 | MS.gene64922:CDS |
| GCACCAAGAAACGTCTTTGA+AGG | 0.447631 | 4.4:-43209587 | MS.gene64922:CDS |
| ACTTGCACTACAACCCATTC+CGG | 0.459457 | 4.4:+43209349 | None:intergenic |
| CTTTCATGGAGAAGTATAGT+TGG | 0.468430 | 4.4:-43208500 | MS.gene64922:CDS |
| GAAGATGAGCAGGGTAGGCT+TGG | 0.474253 | 4.4:-43209056 | MS.gene64922:CDS |
| GCCGGAACGGAAAAGACAAT+TGG | 0.476811 | 4.4:+43209202 | None:intergenic |
| AAAGAATTGACCAAAGACTT+TGG | 0.478011 | 4.4:+43208519 | None:intergenic |
| TTTCATGGAGAAGTATAGTT+GGG | 0.478641 | 4.4:-43208499 | MS.gene64922:CDS |
| CATTCAAAAGGAAGATGAGC+AGG | 0.483405 | 4.4:-43209066 | MS.gene64922:CDS |
| GTGTACAATCTCACCGGAAT+GGG | 0.485997 | 4.4:-43209362 | MS.gene64922:CDS |
| ATGTTGAAGATGCAAATGTT+TGG | 0.488174 | 4.4:-43208566 | MS.gene64922:CDS |
| GCCATTGTAAGTTCTGGAAT+CGG | 0.490745 | 4.4:-43209623 | MS.gene64922:CDS |
| GTAGCTTGTGGTATGTGTTA+GGG | 0.507371 | 4.4:-43208692 | MS.gene64922:CDS |
| GAGATCCCGTCGTTCAGTGT+TGG | 0.510257 | 4.4:+43209551 | None:intergenic |
| AGTGTACAATCTCACCGGAA+TGG | 0.523311 | 4.4:-43209363 | MS.gene64922:CDS |
| TTTATGATAAGCTTTGGTGC+TGG | 0.524017 | 4.4:-43208627 | MS.gene64922:CDS |
| TCAGTGTTGGGGATGATTCG+CGG | 0.524299 | 4.4:+43209564 | None:intergenic |
| GTGGTATGTGTTAGGGTACA+TGG | 0.531641 | 4.4:-43208685 | MS.gene64922:CDS |
| CATCCCCAACACTGAACGAC+GGG | 0.534315 | 4.4:-43209556 | MS.gene64922:CDS |
| GAATCGCGCAACCGCCGGAA+CGG | 0.534316 | 4.4:+43209189 | None:intergenic |
| CGACGATAAAGAAGGAAGAA+TGG | 0.540309 | 4.4:+43209424 | None:intergenic |
| CAAAAGAATCGCGCAACCGC+CGG | 0.542437 | 4.4:+43209184 | None:intergenic |
| CCAACACAAGATAGAATGCT+AGG | 0.550403 | 4.4:-43209719 | None:intergenic |
| ACACTTCTGCTGGTAGCTTG+TGG | 0.556818 | 4.4:-43208704 | MS.gene64922:CDS |
| TTCCTGACTTTCTCAAGTGA+AGG | 0.560019 | 4.4:-43208443 | None:intergenic |
| GAACGACGGGATCTCTGAGA+TGG | 0.560538 | 4.4:-43209543 | MS.gene64922:CDS |
| ATGATTCGCGACGATAAAGA+AGG | 0.561187 | 4.4:+43209416 | None:intergenic |
| GATCCCGTCGTTCAGTGTTG+GGG | 0.565462 | 4.4:+43209553 | None:intergenic |
| ACAAGAACGTCGATTTCTGA+AGG | 0.572740 | 4.4:+43209467 | None:intergenic |
| CTTAGTCCAAATTGGTACAC+TGG | 0.575705 | 4.4:-43209248 | MS.gene64922:CDS |
| AAAAGGAAGATGAGCAGGGT+AGG | 0.584974 | 4.4:-43209061 | MS.gene64922:CDS |
| TCTTCTAAGTCTTCAACTGG+TGG | 0.587214 | 4.4:-43208885 | MS.gene64922:CDS |
| TAGTTGGGTCAATGAAGTTG+AGG | 0.590238 | 4.4:-43208484 | MS.gene64922:CDS |
| GCCGATTCCAGAACTTACAA+TGG | 0.592710 | 4.4:+43209622 | None:intergenic |
| GGGAAATCGCTGATCTAGCA+AGG | 0.595724 | 4.4:+43209489 | None:intergenic |
| AATATGATCTTGAGCCAGCA+AGG | 0.598452 | 4.4:-43208749 | MS.gene64922:CDS |
| GAATTGACCAAAGACTTTGG+TGG | 0.608452 | 4.4:+43208522 | None:intergenic |
| CAAGAACGTCGATTTCTGAA+GGG | 0.614902 | 4.4:+43209468 | None:intergenic |
| AAGAACGTCGATTTCTGAAG+GGG | 0.625621 | 4.4:+43209469 | None:intergenic |
| AACGGAAAAGACAATTGGCT+AGG | 0.628055 | 4.4:+43209207 | None:intergenic |
| AAGAGTCTTCTCTTGCGCCG+TGG | 0.637122 | 4.4:+43209099 | None:intergenic |
| CAACACAAGATAGAATGCTA+GGG | 0.644647 | 4.4:-43209718 | None:intergenic |
| GTAAAAGTGTACAATCTCAC+CGG | 0.655315 | 4.4:-43209368 | MS.gene64922:CDS |
| TCATCCCCAACACTGAACGA+CGG | 0.690414 | 4.4:-43209557 | MS.gene64922:CDS |
| ATTCAAAAGGAAGATGAGCA+GGG | 0.694442 | 4.4:-43209065 | MS.gene64922:CDS |
| TGTTTAGTACGAACGCACCA+CGG | 0.710347 | 4.4:-43209116 | MS.gene64922:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAGTCTTTGTTGACAATTTA+AGG | - | chr4.4:43209155-43209174 | MS.gene64922:CDS | 25.0% |
| ! | AGTCTTTGTTGACAATTTAA+GGG | - | chr4.4:43209156-43209175 | MS.gene64922:CDS | 25.0% |
| ! | TTACAATTGTTGCATTCAAA+AGG | - | chr4.4:43209072-43209091 | MS.gene64922:CDS | 25.0% |
| !! | AAGAAATAAGTTAGCACTTT+TGG | - | chr4.4:43208865-43208884 | MS.gene64922:CDS | 25.0% |
| !! | AGAGTTTTTATGATAAGCTT+TGG | - | chr4.4:43209517-43209536 | MS.gene64922:CDS | 25.0% |
| AAAGAATTGACCAAAGACTT+TGG | + | chr4.4:43209634-43209653 | None:intergenic | 30.0% | |
| AATCAGAAGAACCAAGAATT+TGG | - | chr4.4:43208475-43208494 | MS.gene64922:CDS | 30.0% | |
| ATCAGAAGAACCAAGAATTT+GGG | - | chr4.4:43208476-43208495 | MS.gene64922:CDS | 30.0% | |
| ATGTTGAAGATGCAAATGTT+TGG | - | chr4.4:43209584-43209603 | MS.gene64922:CDS | 30.0% | |
| CAAATGCAATAGTTGCTTAT+GGG | - | chr4.4:43209549-43209568 | MS.gene64922:CDS | 30.0% | |
| GCAAAAAAGAGGCTAAAAAA+AGG | - | chr4.4:43209490-43209509 | MS.gene64922:CDS | 30.0% | |
| TAATTATCCACCAAAGTCTT+TGG | - | chr4.4:43209621-43209640 | MS.gene64922:CDS | 30.0% | |
| TCAAATGCAATAGTTGCTTA+TGG | - | chr4.4:43209548-43209567 | MS.gene64922:CDS | 30.0% | |
| TCACCATTGAATTTCAAAAC+TGG | - | chr4.4:43209304-43209323 | MS.gene64922:CDS | 30.0% | |
| TGTTGAAGATGCAAATGTTT+GGG | - | chr4.4:43209585-43209604 | MS.gene64922:CDS | 30.0% | |
| ! | TTTCATGGAGAAGTATAGTT+GGG | - | chr4.4:43209651-43209670 | MS.gene64922:CDS | 30.0% |
| !!! | ACACCAGTTTTGAAATTCAA+TGG | + | chr4.4:43209310-43209329 | None:intergenic | 30.0% |
| !!! | CAGTATGCTTCTGTTTTTTA+AGG | + | chr4.4:43209005-43209024 | None:intergenic | 30.0% |
| AAAGCAGTGATTGATGGAAT+TGG | - | chr4.4:43209358-43209377 | MS.gene64922:CDS | 35.0% | |
| AGTTCTTCTAAGTCTTCAAC+TGG | - | chr4.4:43209262-43209281 | MS.gene64922:CDS | 35.0% | |
| ATTCAAAAGGAAGATGAGCA+GGG | - | chr4.4:43209085-43209104 | MS.gene64922:CDS | 35.0% | |
| CTCATCTATACCCAAATTCT+TGG | + | chr4.4:43208489-43208508 | None:intergenic | 35.0% | |
| GTCTTTGGTCAATTCTTTCA+TGG | - | chr4.4:43209636-43209655 | MS.gene64922:CDS | 35.0% | |
| ! | ACCCAAAATTTTGCCAACAA+GGG | - | chr4.4:43209186-43209205 | MS.gene64922:CDS | 35.0% |
| ! | CTTTCATGGAGAAGTATAGT+TGG | - | chr4.4:43209650-43209669 | MS.gene64922:CDS | 35.0% |
| ! | GTAAAAGTGTACAATCTCAC+CGG | - | chr4.4:43208782-43208801 | MS.gene64922:CDS | 35.0% |
| ! | TCCCTTGTTGGCAAAATTTT+GGG | + | chr4.4:43209190-43209209 | None:intergenic | 35.0% |
| ! | TTCCCTTGTTGGCAAAATTT+TGG | + | chr4.4:43209191-43209210 | None:intergenic | 35.0% |
| ! | TTTATGATAAGCTTTGGTGC+TGG | - | chr4.4:43209523-43209542 | MS.gene64922:CDS | 35.0% |
| !! | GTAGGCTTGGTTTTCATTTA+GGG | - | chr4.4:43209107-43209126 | MS.gene64922:CDS | 35.0% |
| !!! | AAGACTTTTGTTGCTGCTTT+TGG | + | chr4.4:43209142-43209161 | None:intergenic | 35.0% |
| !!! | AGACTTTTGTTGCTGCTTTT+GGG | + | chr4.4:43209141-43209160 | None:intergenic | 35.0% |
| AACCTAAGCAATTCCCTTGT+TGG | + | chr4.4:43209202-43209221 | None:intergenic | 40.0% | |
| AACGGAAAAGACAATTGGCT+AGG | + | chr4.4:43208946-43208965 | None:intergenic | 40.0% | |
| AATATGATCTTGAGCCAGCA+AGG | - | chr4.4:43209401-43209420 | MS.gene64922:CDS | 40.0% | |
| ATGATTCGCGACGATAAAGA+AGG | + | chr4.4:43208737-43208756 | None:intergenic | 40.0% | |
| CAGAGTCTCTTAGTCCAAAT+TGG | - | chr4.4:43208894-43208913 | MS.gene64922:CDS | 40.0% | |
| CATTCAAAAGGAAGATGAGC+AGG | - | chr4.4:43209084-43209103 | MS.gene64922:CDS | 40.0% | |
| CGACGATAAAGAAGGAAGAA+TGG | + | chr4.4:43208729-43208748 | None:intergenic | 40.0% | |
| CTCAAAGCCATTGTAAGTTC+TGG | - | chr4.4:43208521-43208540 | MS.gene64922:CDS | 40.0% | |
| CTTAGTCCAAATTGGTACAC+TGG | - | chr4.4:43208902-43208921 | MS.gene64922:CDS | 40.0% | |
| GAATTGACCAAAGACTTTGG+TGG | + | chr4.4:43209631-43209650 | None:intergenic | 40.0% | |
| GGTACATGGAAGCAAAAAAG+AGG | - | chr4.4:43209479-43209498 | MS.gene64922:CDS | 40.0% | |
| TAGTTGGGTCAATGAAGTTG+AGG | - | chr4.4:43209666-43209685 | MS.gene64922:CDS | 40.0% | |
| TCATTGCCAGTGTACCAATT+TGG | + | chr4.4:43208911-43208930 | None:intergenic | 40.0% | |
| TCTTCTAAGTCTTCAACTGG+TGG | - | chr4.4:43209265-43209284 | MS.gene64922:CDS | 40.0% | |
| ! | AGGATGACACTACATCGTTT+TGG | - | chr4.4:43209421-43209440 | MS.gene64922:CDS | 40.0% |
| ! | CACCCAAAATTTTGCCAACA+AGG | - | chr4.4:43209185-43209204 | MS.gene64922:CDS | 40.0% |
| ! | CAGAACTTACAATGGCTTTG+AGG | + | chr4.4:43208523-43208542 | None:intergenic | 40.0% |
| ! | CGTCGTGTCTCATTTTGTAA+CGG | + | chr4.4:43208763-43208782 | None:intergenic | 40.0% |
| ! | GTAGCTTGTGGTATGTGTTA+GGG | - | chr4.4:43209458-43209477 | MS.gene64922:CDS | 40.0% |
| !! | AAGAACGTCGATTTCTGAAG+GGG | + | chr4.4:43208684-43208703 | None:intergenic | 40.0% |
| !! | ACAAGAACGTCGATTTCTGA+AGG | + | chr4.4:43208686-43208705 | None:intergenic | 40.0% |
| !! | CAAGAACGTCGATTTCTGAA+GGG | + | chr4.4:43208685-43208704 | None:intergenic | 40.0% |
| !! | GATCATTTTTGCCTCCATAC+AGG | - | chr4.4:43209331-43209350 | MS.gene64922:CDS | 40.0% |
| !! | GCCATTGTAAGTTCTGGAAT+CGG | - | chr4.4:43208527-43208546 | MS.gene64922:CDS | 40.0% |
| !! | GGTAGGCTTGGTTTTCATTT+AGG | - | chr4.4:43209106-43209125 | MS.gene64922:CDS | 40.0% |
| AAAAGGAAGATGAGCAGGGT+AGG | - | chr4.4:43209089-43209108 | MS.gene64922:CDS | 45.0% | |
| ACTTGCACTACAACCCATTC+CGG | + | chr4.4:43208804-43208823 | None:intergenic | 45.0% | |
| AGTGTACAATCTCACCGGAA+TGG | - | chr4.4:43208787-43208806 | MS.gene64922:CDS | 45.0% | |
| GCACCAAGAAACGTCTTTGA+AGG | - | chr4.4:43208563-43208582 | MS.gene64922:CDS | 45.0% | |
| GGAGGAAAAGCAGTGATTGA+TGG | - | chr4.4:43209352-43209371 | MS.gene64922:CDS | 45.0% | |
| GTGGTATGTGTTAGGGTACA+TGG | - | chr4.4:43209465-43209484 | MS.gene64922:CDS | 45.0% | |
| GTGTACAATCTCACCGGAAT+GGG | - | chr4.4:43208788-43208807 | MS.gene64922:CDS | 45.0% | |
| TGCCAACAAGGGAATTGCTT+AGG | - | chr4.4:43209197-43209216 | MS.gene64922:CDS | 45.0% | |
| TGTTTAGTACGAACGCACCA+CGG | - | chr4.4:43209034-43209053 | MS.gene64922:CDS | 45.0% | |
| ! | AATTGTCTTTTCCGTTCCGG+CGG | - | chr4.4:43208950-43208969 | MS.gene64922:CDS | 45.0% |
| ! | ATGCTAGGGACTGAGTTTTG+TGG | - | chr4.4:43208446-43208465 | MS.gene64922:CDS | 45.0% |
| ! | CATTTTTGCCTCCATACAGG+AGG | - | chr4.4:43209334-43209353 | MS.gene64922:CDS | 45.0% |
| ! | GCCAATTGTCTTTTCCGTTC+CGG | - | chr4.4:43208947-43208966 | MS.gene64922:CDS | 45.0% |
| ! | GCCGATTCCAGAACTTACAA+TGG | + | chr4.4:43208531-43208550 | None:intergenic | 45.0% |
| ! | GGTAGCTTGTGGTATGTGTT+AGG | - | chr4.4:43209457-43209476 | MS.gene64922:CDS | 45.0% |
| !! | CGTTTTGGTAACACTTCTGC+TGG | - | chr4.4:43209436-43209455 | MS.gene64922:CDS | 45.0% |
| !! | TCACTGCTTTTCCTCCTGTA+TGG | + | chr4.4:43209348-43209367 | None:intergenic | 45.0% |
| ACACTTCTGCTGGTAGCTTG+TGG | - | chr4.4:43209446-43209465 | MS.gene64922:CDS | 50.0% | |
| AGATCCCGTCGTTCAGTGTT+GGG | + | chr4.4:43208601-43208620 | None:intergenic | 50.0% | |
| CGATGTAGTGTCATCCTTGC+TGG | + | chr4.4:43209418-43209437 | None:intergenic | 50.0% | |
| CGGCCTTCAAAGACGTTTCT+TGG | + | chr4.4:43208569-43208588 | None:intergenic | 50.0% | |
| GCCGGAACGGAAAAGACAAT+TGG | + | chr4.4:43208951-43208970 | None:intergenic | 50.0% | |
| GGGAAATCGCTGATCTAGCA+AGG | + | chr4.4:43208664-43208683 | None:intergenic | 50.0% | |
| TCATCCCCAACACTGAACGA+CGG | - | chr4.4:43208593-43208612 | MS.gene64922:CDS | 50.0% | |
| ! | TCAGTGTTGGGGATGATTCG+CGG | + | chr4.4:43208589-43208608 | None:intergenic | 50.0% |
| !! | CTGCTTTTCCTCCTGTATGG+AGG | + | chr4.4:43209345-43209364 | None:intergenic | 50.0% |
| AAGAGTCTTCTCTTGCGCCG+TGG | + | chr4.4:43209054-43209073 | None:intergenic | 55.0% | |
| CAAAAGAATCGCGCAACCGC+CGG | + | chr4.4:43208969-43208988 | None:intergenic | 55.0% | |
| CATCCCCAACACTGAACGAC+GGG | - | chr4.4:43208594-43208613 | MS.gene64922:CDS | 55.0% | |
| GAAGATGAGCAGGGTAGGCT+TGG | - | chr4.4:43209094-43209113 | MS.gene64922:CDS | 55.0% | |
| GAGATCCCGTCGTTCAGTGT+TGG | + | chr4.4:43208602-43208621 | None:intergenic | 55.0% | |
| GATCCCGTCGTTCAGTGTTG+GGG | + | chr4.4:43208600-43208619 | None:intergenic | 55.0% | |
| ! | GAACGACGGGATCTCTGAGA+TGG | - | chr4.4:43208607-43208626 | MS.gene64922:CDS | 55.0% |
| GAATCGCGCAACCGCCGGAA+CGG | + | chr4.4:43208964-43208983 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 43208446 | 43209726 | 43208446 | ID=MS.gene64922 |
| chr4.4 | mRNA | 43208446 | 43209726 | 43208446 | ID=MS.gene64922.t1;Parent=MS.gene64922 |
| chr4.4 | exon | 43208446 | 43209726 | 43208446 | ID=MS.gene64922.t1.exon1;Parent=MS.gene64922.t1 |
| chr4.4 | CDS | 43208446 | 43209726 | 43208446 | ID=cds.MS.gene64922.t1;Parent=MS.gene64922.t1 |
| Gene Sequence |
| Protein sequence |
