AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene67281


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67281.t1 MTR_1g041285 99.265 136 1 0 1 136 1 136 4.58e-93 265
MS.gene67281.t1 MTR_1g041285 45.902 61 33 0 13 73 86 146 7.27e-11 56.6
MS.gene67281.t1 MTR_1g076650 87.500 136 17 0 1 136 1 136 6.03e-84 242
MS.gene67281.t1 MTR_1g076650 43.548 62 35 0 12 73 85 146 2.21e-11 58.2
MS.gene67281.t1 MTR_6g025320 80.147 136 27 0 1 136 1 136 5.92e-77 224
MS.gene67281.t1 MTR_6g025320 47.692 65 34 0 12 76 85 149 1.83e-12 60.8
MS.gene67281.t1 MTR_5g088320 79.412 136 28 0 1 136 1 136 2.93e-76 223
MS.gene67281.t1 MTR_5g088320 47.692 65 34 0 12 76 85 149 1.89e-12 60.8
MS.gene67281.t1 MTR_7g087610 79.412 136 28 0 1 136 1 136 1.41e-75 221
MS.gene67281.t1 MTR_7g087610 47.692 65 34 0 12 76 85 149 1.78e-12 60.8
MS.gene67281.t1 MTR_0168s0120 82.000 100 18 0 37 136 1 100 1.32e-56 172
MS.gene67281.t1 MTR_0168s0120 47.692 65 34 0 12 76 49 113 6.45e-13 61.2
MS.gene67281.t1 MTR_6g025320 82.000 100 18 0 37 136 1 100 1.32e-56 172
MS.gene67281.t1 MTR_6g025320 47.692 65 34 0 12 76 49 113 6.45e-13 61.2
MS.gene67281.t1 MTR_7g115040 69.630 135 41 0 1 135 1 135 6.42e-55 169
MS.gene67281.t1 MTR_1g071150 60.294 136 53 1 1 136 1 135 1.93e-52 162
MS.gene67281.t1 MTR_8g066630 45.522 134 70 1 5 135 10 143 1.09e-36 123
MS.gene67281.t1 MTR_5g011850 44.118 136 74 1 1 136 1 134 2.21e-36 122
MS.gene67281.t1 MTR_3g055570 47.794 136 56 1 1 136 41 161 8.46e-33 114
MS.gene67281.t1 MTR_7g074020 44.615 130 72 0 5 134 23 152 1.21e-32 113
MS.gene67281.t1 MTR_7g074020 45.238 126 69 0 5 130 23 148 2.72e-32 112
MS.gene67281.t1 MTR_4g112460 43.077 130 72 1 8 135 7 136 2.88e-31 109
MS.gene67281.t1 MTR_4g112460 43.421 76 39 2 2 76 78 150 9.26e-13 62.0
MS.gene67281.t1 MTR_6g007613 44.715 123 68 0 12 134 29 151 8.93e-31 108
MS.gene67281.t1 MTR_6g007613 45.378 119 65 0 12 130 29 147 1.73e-30 107
MS.gene67281.t1 MTR_1g032070 47.581 124 65 0 12 135 46 169 3.62e-30 107
MS.gene67281.t1 MTR_1g032070 42.647 68 39 0 69 136 30 97 9.26e-11 57.4
MS.gene67281.t1 MTR_8g069915 42.336 137 77 1 1 135 1 137 5.65e-29 103
MS.gene67281.t1 MTR_8g069915 38.356 73 42 1 4 76 82 151 5.88e-11 57.4
MS.gene67281.t1 MTR_8g105230 46.774 124 66 0 12 135 36 159 5.96e-29 104
MS.gene67281.t1 MTR_8g105230 51.515 66 31 1 5 69 101 166 3.81e-14 66.2
MS.gene67281.t1 MTR_3g055520 44.118 136 61 1 1 136 41 161 2.46e-27 100
MS.gene67281.t1 MTR_8g107110 43.200 125 70 1 12 136 24 147 1.78e-26 97.4
MS.gene67281.t1 MTR_8g107110 42.188 64 37 0 10 73 94 157 3.90e-11 57.8
MS.gene67281.t1 MTR_4g067270 42.063 126 71 1 12 135 5 130 2.01e-25 94.4
MS.gene67281.t1 MTR_4g067270 48.438 64 31 1 12 73 78 141 4.05e-12 60.1
MS.gene67281.t1 MTR_3g055585 42.647 136 63 1 1 136 41 161 5.03e-25 94.0
MS.gene67281.t1 MTR_5g079340 39.200 125 75 1 12 136 4 127 1.49e-24 92.0
MS.gene67281.t1 MTR_3g055490 56.338 71 31 0 5 75 45 115 9.15e-24 89.4
MS.gene67281.t1 MTR_7g090450 40.769 130 72 3 11 135 72 201 4.16e-23 90.1
MS.gene67281.t1 MTR_6g079570 42.520 127 69 3 12 136 26 150 4.19e-23 89.0
MS.gene67281.t1 MTR_6g079570 39.189 74 45 0 13 86 100 173 2.31e-11 58.5
MS.gene67281.t1 MTR_1g046950 37.795 127 77 1 12 136 4 130 5.94e-23 87.8
MS.gene67281.t1 MTR_3g067610 40.000 125 69 2 12 135 5 124 3.33e-21 83.2
MS.gene67281.t1 MTR_5g092810 37.226 137 82 3 1 136 386 519 2.18e-20 86.3
MS.gene67281.t1 MTR_1g047100 34.921 126 81 1 12 136 4 129 2.42e-20 81.3
MS.gene67281.t1 MTR_8g036075 39.394 132 72 3 12 135 49 180 2.64e-20 82.4
MS.gene67281.t1 MTR_4g132070 36.496 137 83 3 1 136 385 518 3.06e-20 85.9
MS.gene67281.t1 MTR_1g096490 39.855 138 76 3 1 136 324 456 4.20e-20 85.1
MS.gene67281.t1 MTR_4g107490 37.681 138 81 4 1 136 367 501 6.42e-20 84.7
MS.gene67281.t1 MTR_8g095440 36.765 136 83 2 1 136 324 456 1.64e-19 83.6
MS.gene67281.t1 MTR_3g098070 36.029 136 84 2 1 136 323 455 1.67e-19 83.6
MS.gene67281.t1 MTR_1g055255 34.559 136 86 2 1 136 418 550 1.82e-19 83.6
MS.gene67281.t1 MTR_8g099095 35.507 138 83 3 1 136 360 493 1.89e-19 83.6
MS.gene67281.t1 MTR_7g089760 43.651 126 69 1 12 135 5 130 2.15e-19 79.0
MS.gene67281.t1 MTR_7g068710 35.294 136 87 1 1 136 350 484 2.21e-19 83.2
MS.gene67281.t1 MTR_5g009830 35.507 138 83 3 1 136 360 493 2.23e-19 83.2
MS.gene67281.t1 MTR_7g075040 37.594 133 74 3 12 135 47 179 2.69e-19 79.7
MS.gene67281.t1 MTR_4g115170 39.161 143 69 3 12 136 64 206 3.78e-19 80.1
MS.gene67281.t1 MTR_4g115170 52.381 63 28 1 13 73 154 216 3.72e-11 58.9
MS.gene67281.t1 MTR_7g106710 36.765 136 83 2 1 136 429 561 4.01e-19 82.4
MS.gene67281.t1 MTR_3g098090 35.294 136 85 2 1 136 326 458 4.28e-19 82.4
MS.gene67281.t1 MTR_3g051770 35.915 142 84 3 1 136 377 517 6.34e-19 82.0
MS.gene67281.t1 MTR_1g026190 34.058 138 85 3 1 136 376 509 1.82e-18 80.5
MS.gene67281.t1 MTR_5g027000 32.031 128 87 0 8 135 18 145 1.29e-17 74.7
MS.gene67281.t1 MTR_5g017550 37.008 127 73 2 12 135 48 170 1.87e-17 74.7
MS.gene67281.t1 MTR_0028s0170 34.058 138 85 3 1 136 372 505 2.98e-17 77.0
MS.gene67281.t1 MTR_7g106710 36.154 130 80 2 1 130 429 555 5.05e-17 76.6
MS.gene67281.t1 MTR_5g017510 35.507 138 81 3 2 135 38 171 5.06e-17 73.6
MS.gene67281.t1 MTR_5g017560 35.507 138 81 3 2 135 38 171 5.06e-17 73.6
MS.gene67281.t1 MTR_4g086260 34.677 124 79 1 12 135 57 178 8.01e-17 73.2
MS.gene67281.t1 MTR_1g054865 33.824 136 87 2 1 136 455 587 9.11e-17 75.9
MS.gene67281.t1 MTR_4g103630 34.400 125 81 1 11 135 5 128 9.26e-17 72.0
MS.gene67281.t1 MTR_1g041150 33.824 136 87 2 1 136 412 544 9.32e-17 75.9
MS.gene67281.t1 MTR_3g089070 34.483 116 75 1 20 135 14 128 1.50e-16 71.2
MS.gene67281.t1 MTR_3g089090 34.483 116 75 1 20 135 13 127 1.51e-16 71.2
MS.gene67281.t1 MTR_5g099240 33.088 136 88 2 1 136 390 522 1.74e-16 75.1
MS.gene67281.t1 MTR_4g103650 33.600 125 82 1 11 135 1 124 1.75e-16 71.2
MS.gene67281.t1 MTR_5g099240 33.088 136 88 2 1 136 318 450 1.87e-16 74.7
MS.gene67281.t1 MTR_5g089320 32.609 138 87 3 1 136 362 495 2.31e-16 74.7
MS.gene67281.t1 MTR_6g023460 31.250 128 87 1 8 135 4 130 3.78e-16 70.5
MS.gene67281.t1 MTR_7g074240 35.507 138 77 2 11 136 23 160 4.44e-16 70.9
MS.gene67281.t1 MTR_8g078270 34.677 124 79 2 13 135 54 176 4.78e-16 71.2
MS.gene67281.t1 MTR_2g098890 37.500 128 76 2 12 135 64 191 1.18e-15 70.5
MS.gene67281.t1 MTR_4g132040 32.847 137 87 4 1 136 390 522 2.21e-15 71.6
MS.gene67281.t1 MTR_4g066660 34.307 137 86 3 1 136 366 499 3.19e-15 71.2
MS.gene67281.t1 MTR_4g103655 32.800 125 83 1 11 135 5 128 5.96e-15 67.0
MS.gene67281.t1 MTR_3g055480 65.116 43 15 0 93 135 53 95 8.52e-15 66.2
MS.gene67281.t1 MTR_3g055480 50.000 58 29 0 18 75 51 108 4.53e-12 58.9
MS.gene67281.t1 MTR_5g022030 30.282 142 87 5 1 136 395 530 1.78e-14 69.3
MS.gene67281.t1 MTR_3g055510 31.618 136 40 2 1 136 41 123 2.01e-13 63.2
MS.gene67281.t1 MTR_7g091890 29.412 136 95 1 1 136 352 486 2.36e-13 65.9
MS.gene67281.t1 MTR_5g008705 28.448 116 83 0 19 134 1 116 3.31e-12 59.7
MS.gene67281.t1 MTR_1g052530 27.206 136 98 1 1 136 346 480 3.63e-12 62.8
MS.gene67281.t1 MTR_5g022030 31.304 115 73 3 1 109 395 509 4.76e-12 62.4
MS.gene67281.t1 MTR_3g083470 42.647 68 39 0 6 73 150 217 1.75e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67281.t1 AT3G22930 85.606 132 19 0 5 136 28 159 3.50e-79 231
MS.gene67281.t1 AT3G22930 45.161 62 34 0 12 73 108 169 9.06e-11 57.0
MS.gene67281.t1 AT4G14640 84.091 132 21 0 5 136 6 137 9.72e-78 227
MS.gene67281.t1 AT4G14640 45.161 62 34 0 12 73 86 147 1.19e-11 58.9
MS.gene67281.t1 AT2G27030 80.882 136 26 0 1 136 1 136 1.87e-77 227
MS.gene67281.t1 AT2G27030 46.269 67 36 0 12 78 85 151 1.68e-12 61.6
MS.gene67281.t1 AT3G56800 80.882 136 26 0 1 136 1 136 3.54e-77 225
MS.gene67281.t1 AT3G56800 47.692 65 34 0 12 76 85 149 2.20e-12 60.8
MS.gene67281.t1 AT2G27030 80.882 136 26 0 1 136 1 136 3.54e-77 225
MS.gene67281.t1 AT2G27030 47.692 65 34 0 12 76 85 149 2.20e-12 60.8
MS.gene67281.t1 AT2G41110 80.882 136 26 0 1 136 1 136 3.54e-77 225
MS.gene67281.t1 AT2G41110 47.692 65 34 0 12 76 85 149 2.20e-12 60.8
MS.gene67281.t1 AT3G43810 80.147 136 27 0 1 136 1 136 6.20e-77 224
MS.gene67281.t1 AT3G43810 47.692 65 34 0 12 76 85 149 1.92e-12 60.8
MS.gene67281.t1 AT3G43810 80.147 136 27 0 1 136 1 136 1.39e-76 226
MS.gene67281.t1 AT3G43810 48.387 62 32 0 12 73 85 146 1.57e-11 59.7
MS.gene67281.t1 AT5G21274 79.412 136 28 0 1 136 1 136 2.12e-76 223
MS.gene67281.t1 AT5G21274 46.154 65 35 0 12 76 85 149 5.77e-12 59.7
MS.gene67281.t1 AT5G37780 79.412 136 28 0 1 136 1 136 1.00e-75 222
MS.gene67281.t1 AT5G37780 47.692 65 34 0 12 76 85 149 7.65e-13 62.0
MS.gene67281.t1 AT1G66410 79.412 136 28 0 1 136 1 136 1.00e-75 222
MS.gene67281.t1 AT1G66410 47.692 65 34 0 12 76 85 149 7.65e-13 62.0
MS.gene67281.t1 AT2G41110 74.324 148 26 1 1 136 1 148 1.70e-73 216
MS.gene67281.t1 AT2G41110 47.692 65 34 0 12 76 97 161 3.37e-12 60.5
MS.gene67281.t1 AT5G37780 71.523 151 28 1 1 136 1 151 1.70e-71 211
MS.gene67281.t1 AT5G37780 47.692 65 34 0 12 76 100 164 1.22e-12 61.6
MS.gene67281.t1 AT5G37780 66.667 162 28 1 1 136 1 162 8.37e-70 207
MS.gene67281.t1 AT5G37780 47.692 65 34 0 12 76 111 175 1.52e-12 61.6
MS.gene67281.t1 AT1G66410 73.973 146 28 1 1 136 1 146 1.72e-67 201
MS.gene67281.t1 AT1G66410 47.692 65 34 0 12 76 95 159 1.21e-12 61.6
MS.gene67281.t1 AT4G14640 85.586 111 16 0 26 136 9 119 4.86e-66 196
MS.gene67281.t1 AT4G14640 45.161 62 34 0 12 73 68 129 8.54e-12 58.9
MS.gene67281.t1 AT5G37780 81.081 111 21 0 26 136 13 123 7.85e-63 189
MS.gene67281.t1 AT5G37780 47.692 65 34 0 12 76 72 136 8.88e-13 61.6
MS.gene67281.t1 AT4G14640 80.583 103 20 0 5 107 6 108 1.46e-57 175
MS.gene67281.t1 AT3G43810 82.000 100 18 0 37 136 1 100 1.38e-56 172
MS.gene67281.t1 AT3G43810 47.692 65 34 0 12 76 49 113 6.76e-13 61.2
MS.gene67281.t1 AT3G43810 82.000 100 18 0 37 136 1 100 1.38e-56 172
MS.gene67281.t1 AT3G43810 47.692 65 34 0 12 76 49 113 6.76e-13 61.2
MS.gene67281.t1 AT3G22930 79.612 103 21 0 5 107 28 130 2.87e-56 172
MS.gene67281.t1 AT1G66410 82.000 100 18 0 37 136 1 100 3.99e-56 171
MS.gene67281.t1 AT1G66410 47.692 65 34 0 12 76 49 113 2.55e-13 62.4
MS.gene67281.t1 AT1G66410 82.000 100 18 0 37 136 1 100 3.99e-56 171
MS.gene67281.t1 AT1G66410 47.692 65 34 0 12 76 49 113 2.55e-13 62.4
MS.gene67281.t1 AT2G41090 54.412 136 59 1 1 136 1 133 4.43e-43 140
MS.gene67281.t1 AT2G41100 51.316 152 57 2 1 135 55 206 1.56e-40 137
MS.gene67281.t1 AT2G41100 52.688 93 41 1 5 97 149 238 6.86e-25 96.3
MS.gene67281.t1 AT2G41100 41.379 116 52 2 36 135 1 116 8.42e-22 88.2
MS.gene67281.t1 AT2G41100 51.316 152 57 2 1 135 55 206 1.56e-40 137
MS.gene67281.t1 AT2G41100 52.688 93 41 1 5 97 149 238 6.86e-25 96.3
MS.gene67281.t1 AT2G41100 41.379 116 52 2 36 135 1 116 8.42e-22 88.2
MS.gene67281.t1 AT2G41100 51.316 152 57 2 1 135 55 206 1.56e-40 137
MS.gene67281.t1 AT2G41100 52.688 93 41 1 5 97 149 238 6.86e-25 96.3
MS.gene67281.t1 AT2G41100 41.379 116 52 2 36 135 1 116 8.42e-22 88.2
MS.gene67281.t1 AT2G41100 51.316 152 57 2 1 135 90 241 3.49e-40 137
MS.gene67281.t1 AT2G41100 45.695 151 66 2 1 135 1 151 1.40e-37 130
MS.gene67281.t1 AT2G41100 52.688 93 41 1 5 97 184 273 1.25e-24 96.3
MS.gene67281.t1 AT2G41100 51.316 152 57 2 1 135 90 241 3.49e-40 137
MS.gene67281.t1 AT2G41100 45.695 151 66 2 1 135 1 151 1.40e-37 130
MS.gene67281.t1 AT2G41100 52.688 93 41 1 5 97 184 273 1.25e-24 96.3
MS.gene67281.t1 AT3G51920 48.148 135 70 0 1 135 1 135 9.05e-38 125
MS.gene67281.t1 AT1G62820 43.939 132 72 1 5 136 6 135 5.31e-35 119
MS.gene67281.t1 AT1G12310 43.182 132 73 1 5 136 6 135 3.50e-34 116
MS.gene67281.t1 AT3G50360 46.400 125 67 0 12 136 27 151 9.65e-33 113
MS.gene67281.t1 AT1G32250 41.304 138 75 2 5 136 9 146 1.26e-31 110
MS.gene67281.t1 AT1G18530 42.748 131 73 1 7 135 2 132 1.23e-30 107
MS.gene67281.t1 AT1G18530 43.836 73 38 1 4 76 77 146 4.78e-13 62.8
MS.gene67281.t1 AT1G66400 46.032 126 66 1 12 135 15 140 1.17e-29 105
MS.gene67281.t1 AT1G66400 41.176 68 40 0 6 73 84 151 4.73e-12 60.1
MS.gene67281.t1 AT3G03000 44.697 132 72 1 5 135 13 144 4.47e-29 104
MS.gene67281.t1 AT5G37770 45.312 128 66 1 12 135 17 144 1.51e-28 102
MS.gene67281.t1 AT5G37770 38.462 65 40 0 10 74 92 156 4.91e-11 57.4
MS.gene67281.t1 AT5G37770 45.312 128 66 1 12 135 17 144 1.51e-28 102
MS.gene67281.t1 AT5G37770 38.462 65 40 0 10 74 92 156 4.91e-11 57.4
MS.gene67281.t1 AT2G41100 52.577 97 43 1 1 97 1 94 1.18e-27 100
MS.gene67281.t1 AT2G41100 47.619 63 32 1 73 135 1 62 2.87e-11 57.8
MS.gene67281.t1 AT4G37010 41.600 125 73 0 12 136 31 155 1.64e-27 100
MS.gene67281.t1 AT4G37010 41.600 125 73 0 12 136 27 151 1.66e-27 100
MS.gene67281.t1 AT1G24620 44.094 127 71 0 9 135 34 160 3.93e-27 99.8
MS.gene67281.t1 AT1G24620 46.269 67 36 0 8 74 106 172 1.40e-11 59.3
MS.gene67281.t1 AT3G25600 39.416 137 81 1 1 135 1 137 4.58e-27 99.0
MS.gene67281.t1 AT3G25600 41.096 73 40 1 4 76 82 151 1.53e-12 61.6
MS.gene67281.t1 AT2G41100 52.688 93 41 1 5 97 59 148 9.12e-26 96.7
MS.gene67281.t1 AT2G41100 49.123 114 41 2 39 135 3 116 4.67e-25 94.7
MS.gene67281.t1 AT1G18210 39.516 124 71 1 12 135 23 142 2.59e-23 89.7
MS.gene67281.t1 AT1G18210 39.516 124 71 1 12 135 23 142 2.59e-23 89.7
MS.gene67281.t1 AT3G10190 39.416 137 80 3 1 135 59 194 3.53e-23 90.1
MS.gene67281.t1 AT1G05990 41.860 129 72 2 11 136 4 132 3.70e-23 88.6
MS.gene67281.t1 AT1G05990 46.032 63 32 1 13 73 80 142 2.18e-11 58.2
MS.gene67281.t1 AT1G73630 38.095 126 74 1 11 136 19 140 1.36e-22 87.4
MS.gene67281.t1 AT2G43290 40.152 132 72 2 12 136 65 196 1.88e-22 88.6
MS.gene67281.t1 AT2G43290 50.000 64 30 1 12 73 143 206 1.05e-12 62.8
MS.gene67281.t1 AT3G50770 38.760 129 74 2 12 135 64 192 7.98e-22 86.7
MS.gene67281.t1 AT2G15680 35.115 131 83 1 5 135 43 171 2.64e-21 84.7
MS.gene67281.t1 AT1G35670 38.971 136 80 2 1 136 320 452 3.30e-21 88.6
MS.gene67281.t1 AT1G76040 36.029 136 85 2 1 136 167 300 4.64e-21 86.7
MS.gene67281.t1 AT1G76040 36.029 136 85 2 1 136 167 300 4.64e-21 86.7
MS.gene67281.t1 AT4G03290 38.931 131 75 2 11 136 4 134 5.71e-21 83.2
MS.gene67281.t1 AT4G03290 49.231 65 31 1 13 75 82 146 1.32e-13 63.9
MS.gene67281.t1 AT5G23580 38.971 136 80 2 1 136 316 448 6.37e-21 87.4
MS.gene67281.t1 AT4G09570 39.855 138 76 3 1 136 319 451 7.75e-21 87.4
MS.gene67281.t1 AT5G17470 38.583 127 76 1 11 135 1 127 9.88e-21 82.4
MS.gene67281.t1 AT5G17470 42.647 68 39 0 7 74 72 139 4.22e-11 57.4
MS.gene67281.t1 AT1G76040 36.029 136 85 2 1 136 405 538 1.13e-20 87.0
MS.gene67281.t1 AT3G03400 36.220 127 79 1 11 135 4 130 1.48e-20 81.6
MS.gene67281.t1 AT3G59440 39.844 128 74 2 11 136 50 176 1.73e-20 82.8
MS.gene67281.t1 AT3G59440 45.946 74 38 1 2 73 113 186 4.14e-12 60.8
MS.gene67281.t1 AT4G04720 37.956 137 81 3 1 136 373 506 2.43e-20 85.9
MS.gene67281.t1 AT4G04720 37.956 137 81 3 1 136 373 506 2.43e-20 85.9
MS.gene67281.t1 AT4G21940 37.226 137 82 3 1 136 395 528 5.17e-20 85.1
MS.gene67281.t1 AT4G21940 37.226 137 82 3 1 136 395 528 6.12e-20 84.7
MS.gene67281.t1 AT4G23650 34.783 138 84 3 1 136 372 505 1.16e-19 84.0
MS.gene67281.t1 AT2G41410 38.168 131 78 3 8 135 66 196 1.14e-18 78.6
MS.gene67281.t1 AT5G19360 36.496 137 83 3 1 136 362 495 1.25e-18 81.3
MS.gene67281.t1 AT4G12860 38.889 126 75 1 12 135 5 130 1.28e-18 77.0
MS.gene67281.t1 AT5G12180 36.496 137 83 3 1 136 367 500 1.74e-18 80.9
MS.gene67281.t1 AT4G04740 36.090 133 81 3 5 136 366 495 2.21e-18 80.5
MS.gene67281.t1 AT4G04740 36.090 133 81 3 5 136 366 495 2.21e-18 80.5
MS.gene67281.t1 AT4G04740 36.090 133 81 3 5 136 366 495 2.21e-18 80.5
MS.gene67281.t1 AT4G04740 36.090 133 81 3 5 136 366 495 2.21e-18 80.5
MS.gene67281.t1 AT4G04740 36.090 133 81 3 5 136 366 495 2.21e-18 80.5
MS.gene67281.t1 AT4G04740 36.090 133 81 3 5 136 366 495 2.21e-18 80.5
MS.gene67281.t1 AT2G36180 41.270 126 71 2 13 135 1 126 3.32e-18 75.9
MS.gene67281.t1 AT3G07490 39.683 126 74 1 12 135 5 130 3.76e-18 75.9
MS.gene67281.t1 AT1G61950 34.307 137 84 3 1 135 393 525 4.89e-18 79.3
MS.gene67281.t1 AT4G38230 34.559 136 86 2 1 136 174 306 5.15e-18 78.6
MS.gene67281.t1 AT4G04695 36.496 137 83 3 1 136 325 458 8.12e-18 79.0
MS.gene67281.t1 AT4G38230 34.559 136 86 2 1 136 348 480 8.66e-18 78.6
MS.gene67281.t1 AT4G38230 34.559 136 86 2 1 136 318 450 9.04e-18 78.6
MS.gene67281.t1 AT4G38230 34.559 136 86 2 1 136 318 450 9.04e-18 78.6
MS.gene67281.t1 AT4G04700 37.956 137 81 3 1 136 325 458 2.26e-17 77.4
MS.gene67281.t1 AT3G20410 32.353 136 90 2 1 136 385 518 4.57e-17 76.6
MS.gene67281.t1 AT3G20410 32.353 136 90 2 1 136 385 518 4.57e-17 76.6
MS.gene67281.t1 AT2G17290 33.824 136 87 2 1 136 379 511 6.00e-17 76.3
MS.gene67281.t1 AT2G17290 33.824 136 87 2 1 136 379 511 6.00e-17 76.3
MS.gene67281.t1 AT3G51850 33.824 136 89 1 1 136 348 482 7.82e-17 75.9
MS.gene67281.t1 AT1G50700 31.618 136 91 2 1 136 367 500 9.37e-17 75.9
MS.gene67281.t1 AT4G04740 35.659 129 79 3 5 132 366 491 1.14e-16 75.5
MS.gene67281.t1 AT3G10660 31.618 136 90 2 1 136 480 612 1.42e-16 75.5
MS.gene67281.t1 AT3G10660 31.618 136 90 2 1 136 480 612 1.42e-16 75.5
MS.gene67281.t1 AT5G04870 32.353 136 89 2 1 136 444 576 1.60e-16 75.1
MS.gene67281.t1 AT3G51850 37.736 106 65 1 1 106 348 452 1.92e-16 74.7
MS.gene67281.t1 AT2G38910 33.088 136 88 2 1 136 428 560 3.18e-16 74.3
MS.gene67281.t1 AT4G35310 31.618 136 90 2 1 136 391 523 7.33e-16 73.2
MS.gene67281.t1 AT4G35310 31.618 136 90 2 1 136 391 523 7.33e-16 73.2
MS.gene67281.t1 AT3G03410 35.246 122 70 1 14 135 4 116 1.10e-15 68.9
MS.gene67281.t1 AT1G74740 33.577 137 88 3 1 136 353 487 2.00e-15 72.0
MS.gene67281.t1 AT4G04710 34.307 137 86 3 1 136 326 459 3.80e-15 71.2
MS.gene67281.t1 AT4G04710 34.307 137 86 3 1 136 312 445 4.44e-15 70.9
MS.gene67281.t1 AT4G21940 38.384 99 60 1 1 99 395 492 4.59e-15 70.9
MS.gene67281.t1 AT4G04710 34.307 137 86 3 1 136 339 472 4.88e-15 70.9
MS.gene67281.t1 AT5G12480 33.577 137 89 2 1 136 353 488 5.45e-15 70.9
MS.gene67281.t1 AT5G12480 33.577 137 89 2 1 136 259 394 5.52e-15 70.5
MS.gene67281.t1 AT1G76040 35.644 101 64 1 1 101 405 504 2.26e-14 68.9
MS.gene67281.t1 AT4G20780 32.877 146 78 2 11 136 28 173 2.55e-14 66.6
MS.gene67281.t1 AT5G42380 32.800 125 83 1 12 135 49 173 3.82e-14 66.2
MS.gene67281.t1 AT4G04710 34.532 139 85 4 1 136 339 474 6.80e-14 67.8
MS.gene67281.t1 AT5G19450 32.847 137 90 2 1 136 351 486 8.77e-14 67.4
MS.gene67281.t1 AT5G19450 32.847 137 90 2 1 136 351 486 8.77e-14 67.4
MS.gene67281.t1 AT1G18890 35.507 138 84 4 1 136 357 491 9.23e-14 67.4
MS.gene67281.t1 AT3G57530 32.117 137 89 3 1 136 357 490 1.28e-13 67.0
MS.gene67281.t1 AT2G31500 31.655 139 91 3 1 136 360 497 3.55e-13 65.5
MS.gene67281.t1 AT5G66210 28.169 142 90 5 1 136 358 493 5.03e-13 65.1
MS.gene67281.t1 AT5G66210 28.169 142 90 5 1 136 358 493 5.03e-13 65.1
MS.gene67281.t1 AT1G50700 33.333 99 65 1 1 99 367 464 1.84e-12 63.5
MS.gene67281.t1 AT1G50700 27.160 162 90 3 1 136 367 526 2.70e-12 63.2
MS.gene67281.t1 AT5G44460 33.094 139 79 3 11 136 27 164 3.68e-12 60.8
MS.gene67281.t1 AT2G41860 30.147 136 94 1 1 136 348 482 5.14e-12 62.4
MS.gene67281.t1 AT2G41860 30.147 136 94 1 1 136 348 482 5.19e-12 62.4
MS.gene67281.t1 AT2G17890 26.761 142 92 5 1 136 404 539 5.51e-12 62.0
MS.gene67281.t1 AT5G66210 26.718 131 90 3 1 125 358 488 8.45e-12 61.6
MS.gene67281.t1 AT1G76650 31.783 129 87 1 7 135 38 165 5.84e-11 57.4
MS.gene67281.t1 AT1G76650 31.783 129 87 1 7 135 38 165 5.84e-11 57.4
MS.gene67281.t1 AT5G66210 28.696 115 76 3 1 109 358 472 9.31e-11 58.5

Find 25 sgRNAs with CRISPR-Local

Find 73 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGAGTTCTTGAACTTAA+TGG 0.156792 1.3:+24295879 MS.gene67281:CDS
CAACCTCGTTTATCATTTCT+TGG 0.231199 1.3:-24295828 None:intergenic
GAGACACGTTATGATCAATT+TGG 0.239118 1.3:+24297171 MS.gene67281:CDS
CTTCTTTGATCTCAACAATT+TGG 0.239416 1.3:-24295497 None:intergenic
GATGATTAAAGAAGCAGATT+TGG 0.325770 1.3:+24297225 MS.gene67281:CDS
CTTGGAGCTCTTCCTCTGTT+GGG 0.341743 1.3:-24295810 None:intergenic
TCTTGGAGCTCTTCCTCTGT+TGG 0.366378 1.3:-24295811 None:intergenic
TGCAACTGTAATTAGGTCAT+TGG 0.376466 1.3:+24295780 MS.gene67281:CDS
AGACACGTTATGATCAATTT+GGG 0.383512 1.3:+24297172 MS.gene67281:CDS
AGATCTCAAAGAGGCTTTCA+AGG 0.399505 1.3:+24296033 MS.gene67281:CDS
TTTAGCTTGTTTGACAAAGA+TGG 0.404110 1.3:+24295522 MS.gene67281:CDS
AAGAACTTGCAACTGTAATT+AGG 0.411307 1.3:+24295773 MS.gene67281:CDS
GAGGTTGATGCAGATGGAAA+TGG 0.427391 1.3:+24295844 MS.gene67281:CDS
CAAGAACTCAACAAATTCAA+TGG 0.441259 1.3:-24295869 None:intergenic
ATCTTTGTCAAACAAGCTAA+AGG 0.492900 1.3:-24295520 None:intergenic
GAAGCAGATTTGGACGGTGA+TGG 0.535179 1.3:+24297235 MS.gene67281:CDS
ATAAACGAGGTTGATGCAGA+TGG 0.548616 1.3:+24295838 MS.gene67281:CDS
TTGTTTGACAAAGATGGAGA+TGG 0.580494 1.3:+24295528 MS.gene67281:CDS
TGGTTATATTTCCGCTAGTG+AGG 0.592900 1.3:+24296075 MS.gene67281:CDS
TTTAATAGGCTGCATTACTG+TGG 0.604938 1.3:+24295750 MS.gene67281:intron
ATTAAAGAAGCAGATTTGGA+CGG 0.618310 1.3:+24297229 MS.gene67281:CDS
TGCAGATGAAGATCTCAAAG+AGG 0.636781 1.3:+24296024 MS.gene67281:CDS
ATATTTATATACCTCACTAG+CGG 0.685027 1.3:-24296086 None:intergenic
ATTGGATCAAAACCCAACAG+AGG 0.719116 1.3:+24295798 MS.gene67281:CDS
GCTCCAAGAAATGATAAACG+AGG 0.724641 1.3:+24295825 MS.gene67281:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATAATTGAAATGAAATA+TGG - chr1.3:24295589-24295608 None:intergenic 10.0%
!! TTCAAAAATATTATAGTATT+AGG - chr1.3:24295688-24295707 None:intergenic 10.0%
!!! AAAATATTTCATAGTTTTAA+TGG - chr1.3:24296728-24296747 None:intergenic 10.0%
!! CACATTAATATTATAGTATA+AGG - chr1.3:24295715-24295734 None:intergenic 15.0%
!! TTTCTTTGTATATAGAAAAA+AGG + chr1.3:24296391-24296410 MS.gene67281:intron 15.0%
!!! AAGTTATTTTATAACTAATG+GGG - chr1.3:24296506-24296525 None:intergenic 15.0%
!!! AATAATTACTTTCATTTTCT+TGG - chr1.3:24295905-24295924 None:intergenic 15.0%
!!! AGAAGTTATTTTATAACTAA+TGG - chr1.3:24296508-24296527 None:intergenic 15.0%
!!! ATTCTTTAAAATGAAACTTT+TGG + chr1.3:24296167-24296186 MS.gene67281:intron 15.0%
!!! GAAGTTATTTTATAACTAAT+GGG - chr1.3:24296507-24296526 None:intergenic 15.0%
!!! TAAAATAACTTCTTTGTTAT+AGG + chr1.3:24296515-24296534 MS.gene67281:intron 15.0%
!!! TTATTTTTTTTAATGAAGGA+GGG - chr1.3:24296469-24296488 None:intergenic 15.0%
!!! TTTATTTTTTTTAATGAAGG+AGG - chr1.3:24296470-24296489 None:intergenic 15.0%
!! AATCACTGTATAATTGTAAT+GGG - chr1.3:24296352-24296371 None:intergenic 20.0%
!! ACATTATTGTAAGAAATGAA+AGG - chr1.3:24295934-24295953 None:intergenic 20.0%
!! AGATACATTATGATTATGAT+AGG + chr1.3:24296433-24296452 MS.gene67281:intron 20.0%
!! CAATTATACAGTGATTAAAT+TGG + chr1.3:24296356-24296375 MS.gene67281:intron 20.0%
!! CATTATTGTAAGAAATGAAA+GGG - chr1.3:24295933-24295952 None:intergenic 20.0%
!! CTTCTTGATTAATCTTTAAT+AGG + chr1.3:24295736-24295755 MS.gene67281:intron 20.0%
!! TAATCACTGTATAATTGTAA+TGG - chr1.3:24296353-24296372 None:intergenic 20.0%
!!! AGTTATTTTATAACTAATGG+GGG - chr1.3:24296505-24296524 None:intergenic 20.0%
!!! GTTTTTGATAAAGATCAAAA+TGG + chr1.3:24296055-24296074 MS.gene67281:CDS 20.0%
!!! TATATAAATATTTTCCTCTC+CGG + chr1.3:24296098-24296117 MS.gene67281:intron 20.0%
! AATTACTCTTGCTCAATTTA+TGG + chr1.3:24296610-24296629 MS.gene67281:intron 25.0%
! ATATTTATATACCTCACTAG+CGG - chr1.3:24296089-24296108 None:intergenic 25.0%
! TAATCTAAACATGCATTAAC+CGG - chr1.3:24296120-24296139 None:intergenic 25.0%
! TGAAAAATTAACTGATGAAG+AGG + chr1.3:24297195-24297214 MS.gene67281:CDS 25.0%
! TGAAGCATGATGATAAATAT+TGG - chr1.3:24295638-24295657 None:intergenic 25.0%
! TTTATTGCATGTACAAAAAC+AGG + chr1.3:24296812-24296831 MS.gene67281:intron 25.0%
!! CTAAAAAAAAGTGTAATGGA+AGG - chr1.3:24296320-24296339 None:intergenic 25.0%
!! CTATTATTATTCATCGATTG+CGG - chr1.3:24296990-24297009 None:intergenic 25.0%
!! TAACTTCTTTGTTATAGGAT+TGG + chr1.3:24296520-24296539 MS.gene67281:intron 25.0%
!! TCACCTAAAAAAAAGTGTAA+TGG - chr1.3:24296324-24296343 None:intergenic 25.0%
!!! CTTCCATTACACTTTTTTTT+AGG + chr1.3:24296318-24296337 MS.gene67281:intron 25.0%
AAGAACTTGCAACTGTAATT+AGG + chr1.3:24295773-24295792 MS.gene67281:CDS 30.0%
ACAACGAGTTTCACATAATT+AGG - chr1.3:24296210-24296229 None:intergenic 30.0%
AGACACGTTATGATCAATTT+GGG + chr1.3:24297172-24297191 MS.gene67281:CDS 30.0%
ATATTGGCAACAAACAAAGA+AGG - chr1.3:24295622-24295641 None:intergenic 30.0%
ATCTTTGTCAAACAAGCTAA+AGG - chr1.3:24295523-24295542 None:intergenic 30.0%
ATGCACATTAATTTCACACA+TGG + chr1.3:24296896-24296915 MS.gene67281:intron 30.0%
ATTAAAGAAGCAGATTTGGA+CGG + chr1.3:24297229-24297248 MS.gene67281:CDS 30.0%
CAACGAGTTTCACATAATTA+GGG - chr1.3:24296209-24296228 None:intergenic 30.0%
CAAGAACTCAACAAATTCAA+TGG - chr1.3:24295872-24295891 None:intergenic 30.0%
CTTCTTTGATCTCAACAATT+TGG - chr1.3:24295500-24295519 None:intergenic 30.0%
GATGATTAAAGAAGCAGATT+TGG + chr1.3:24297225-24297244 MS.gene67281:CDS 30.0%
TATGATTATGATAGGCTTCA+TGG + chr1.3:24296441-24296460 MS.gene67281:intron 30.0%
TGTTGAGTTCTTGAACTTAA+TGG + chr1.3:24295879-24295898 MS.gene67281:CDS 30.0%
!! TTTAGCTTGTTTGACAAAGA+TGG + chr1.3:24295522-24295541 MS.gene67281:CDS 30.0%
ACACTTCTTCAATCAACTAG+AGG + chr1.3:24296946-24296965 MS.gene67281:intron 35.0%
CAACCTCGTTTATCATTTCT+TGG - chr1.3:24295831-24295850 None:intergenic 35.0%
GAGACACGTTATGATCAATT+TGG + chr1.3:24297171-24297190 MS.gene67281:CDS 35.0%
TGCAACTGTAATTAGGTCAT+TGG + chr1.3:24295780-24295799 MS.gene67281:CDS 35.0%
TGCATCAGTTTCCTAAATGA+GGG - chr1.3:24296008-24296027 None:intergenic 35.0%
TTGTTTGACAAAGATGGAGA+TGG + chr1.3:24295528-24295547 MS.gene67281:CDS 35.0%
TTTAATAGGCTGCATTACTG+TGG + chr1.3:24295750-24295769 MS.gene67281:intron 35.0%
TTTCTTGAAGCATAGAGCTA+TGG + chr1.3:24296745-24296764 MS.gene67281:intron 35.0%
! ATTATTCATCGATTGCGGAA+AGG - chr1.3:24296985-24297004 None:intergenic 35.0%
!!! CTATTTTTTCCCCCTCATTT+AGG + chr1.3:24295994-24296013 MS.gene67281:intron 35.0%
AGATCTCAAAGAGGCTTTCA+AGG + chr1.3:24296033-24296052 MS.gene67281:CDS 40.0%
ATTGGATCAAAACCCAACAG+AGG + chr1.3:24295798-24295817 MS.gene67281:CDS 40.0%
CATCAGTTTCCTAAATGAGG+GGG - chr1.3:24296006-24296025 None:intergenic 40.0%
CTGCATCAGTTTCCTAAATG+AGG - chr1.3:24296009-24296028 None:intergenic 40.0%
GCATCAGTTTCCTAAATGAG+GGG - chr1.3:24296007-24296026 None:intergenic 40.0%
GCTCCAAGAAATGATAAACG+AGG + chr1.3:24295825-24295844 MS.gene67281:CDS 40.0%
TAAACATGCATTAACCGGAG+AGG - chr1.3:24296115-24296134 None:intergenic 40.0%
TGCAGATGAAGATCTCAAAG+AGG + chr1.3:24296024-24296043 MS.gene67281:CDS 40.0%
TGGTTATATTTCCGCTAGTG+AGG + chr1.3:24296075-24296094 MS.gene67281:CDS 40.0%
!! ATAAACGAGGTTGATGCAGA+TGG + chr1.3:24295838-24295857 MS.gene67281:CDS 40.0%
!! GAGGTTGATGCAGATGGAAA+TGG + chr1.3:24295844-24295863 MS.gene67281:CDS 45.0%
!!! TTATTTATTTTTTTTAATGA+AGG - chr1.3:24296473-24296492 None:intergenic 5.0%
CTTGGAGCTCTTCCTCTGTT+GGG - chr1.3:24295813-24295832 None:intergenic 50.0%
GAAGCAGATTTGGACGGTGA+TGG + chr1.3:24297235-24297254 MS.gene67281:CDS 50.0%
TCTTGGAGCTCTTCCTCTGT+TGG - chr1.3:24295814-24295833 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 24295474 24297261 24295474 ID=MS.gene67281
chr1.3 mRNA 24295474 24297261 24295474 ID=MS.gene67281.t1;Parent=MS.gene67281
chr1.3 exon 24295474 24295549 24295474 ID=MS.gene67281.t1.exon1;Parent=MS.gene67281.t1
chr1.3 CDS 24295474 24295549 24295474 ID=cds.MS.gene67281.t1;Parent=MS.gene67281.t1
chr1.3 exon 24295758 24295915 24295758 ID=MS.gene67281.t1.exon2;Parent=MS.gene67281.t1
chr1.3 CDS 24295758 24295915 24295758 ID=cds.MS.gene67281.t1;Parent=MS.gene67281.t1
chr1.3 exon 24296016 24296096 24296016 ID=MS.gene67281.t1.exon3;Parent=MS.gene67281.t1
chr1.3 CDS 24296016 24296096 24296016 ID=cds.MS.gene67281.t1;Parent=MS.gene67281.t1
chr1.3 exon 24297169 24297261 24297169 ID=MS.gene67281.t1.exon4;Parent=MS.gene67281.t1
chr1.3 CDS 24297169 24297261 24297169 ID=cds.MS.gene67281.t1;Parent=MS.gene67281.t1
Gene Sequence

>MS.gene67281

ATGGCAGAAATTTTGAATGAAGACCAAATTGTTGAGATCAAAGAAGCCTTTAGCTTGTTTGACAAAGATGGAGATGGTAAGCAAAAAAATTTATATCATTTTTACAATATCACCATATTTCATTTCAATTATATAAATTTATAATCCTTCTTTGTTTGTTGCCAATATTTATCATCATGCTTCAATTATTTTCACAAATATAATGTTCTTACCTAATACTATAATATTTTTGAAGAAACCTTATACTATAATATTAATGTGTCTTCTTGATTAATCTTTAATAGGCTGCATTACTGTGGAAGAACTTGCAACTGTAATTAGGTCATTGGATCAAAACCCAACAGAGGAAGAGCTCCAAGAAATGATAAACGAGGTTGATGCAGATGGAAATGGAACCATTGAATTTGTTGAGTTCTTGAACTTAATGGCCAAGAAAATGAAAGTAATTATTCTCAACCCTTTCATTTCTTACAATAATGTTTTTTTTTTTTTTTTATAGTTCTCTTAGTCTCATTCAGCTCTATTTTTTCCCCCTCATTTAGGAAACTGATGCAGATGAAGATCTCAAAGAGGCTTTCAAGGTTTTTGATAAAGATCAAAATGGTTATATTTCCGCTAGTGAGGTATATAAATATTTTCCTCTCCGGTTAATGCATGTTTAGATTATCAGCGAGTTTGATGAAATATATTGTGATTCTTTAAAATGAAACTTTTGGCAAAATCACATTCTCGCCCTAATTATGTGAAACTCGTTGTCATGCAGTCATGTATGTGTTCTTAGCAATCTTCATTGTTTTTTTATTTTTATTTTTATTTTTATAAAAGCATTGATAAAAAAATTATCCTTCCATTACACTTTTTTTTAGGTGATCTTTCCCATTACAATTATACAGTGATTAAATTGGAAAACAATTTTTTTTCTTTGTATATAGAAAAAAGGAAATATGATGTATAAAAATAGATACATTATGATTATGATAGGCTTCATGGCTCCCTCCTTCATTAAAAAAAATAAATAATAATTCATGCCCCCATTAGTTATAAAATAACTTCTTTGTTATAGGATTGGAAAAATATTTTTAGACATGCATAACACACTCGATAAAAGAATTACTCATTTACAAAAAAAATAAAAAAATTACTCTTGCTCAATTTATGGATGCACAAACATAAATACGTTTCTACAAAATATAATAAAACATTTTTTAATTGTTGTTCGCTCATAATTATAACATTTGACATTTTAACAAACCATTAAAACTATGAAATATTTTCTTGAAGCATAGAGCTATGGAATTTTATTGCTTGTACATATTCGTTTTGTTGCAAGAGATTTCTTTTATTGCATGTACAAAAACAGGATGTCACAAACATTTATTTATATTCTAATTTATACTAGTATATAAAAAGAAGAAGAAAAAAATGCACATTAATTTCACACATGGACTGTGCACATTTTCTGTGCATGATGCACACTTCTTCAATCAACTAGAGGACAGTACTTTGTACCTTTCCGCAATCGATGAATAATAATAGCTGTATGATTTATATAAAAAGTGCATTAGTGTTTGACATTTGATTAGAGTATTCTTTTAAAGAGAATCTTGTTTTCAGTTTTCACTCTGTTACTAAATACAATTAACATGTGTGTCTATATATTAAATATTAAATTATGTACATTTATGTGTTGTGCAGTTGAGACACGTTATGATCAATTTGGGTGAAAAATTAACTGATGAAGAGGTTGATCAGATGATTAAAGAAGCAGATTTGGACGGTGATGGACAA

Protein sequence

>MS.gene67281.t1

MAEILNEDQIVEIKEAFSLFDKDGDGCITVEELATVIRSLDQNPTEEELQEMINEVDADGNGTIEFVEFLNLMAKKMKETDADEDLKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVDQMIKEADLDGDGQ