AlfalfaGEDB | MS.gene90135

M. sativa cultivar XinJiangDaYe / MS.gene90135

KEGG: K08914
GO: -
PFAM: PF00504.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90135.t1	XP_003596490.1	96.8	62	2	0	1	62	34	95	2.60E-27	130.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90135.t1	P27489	88.7	62	7	0	1	62	35	96	1.7e-27	122.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90135.t1	G7IR60	96.8	62	2	0	1	62	34	95	1.9e-27	130.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049222	MS.gene90135	0.812131	4.95E-51	-1.69E-46
MS.gene049232	MS.gene90135	0.837119	6.27E-57	-1.69E-46
MS.gene049320	MS.gene90135	0.824174	9.31E-54	-1.69E-46
MS.gene049356	MS.gene90135	0.808779	2.62E-50	-1.69E-46
MS.gene049369	MS.gene90135	0.824209	9.14E-54	-1.69E-46
MS.gene049396	MS.gene90135	0.860792	1.61E-63	-1.69E-46
MS.gene049609	MS.gene90135	0.840437	8.70E-58	-1.69E-46
MS.gene049907	MS.gene90135	0.846411	2.21E-59	-1.69E-46
MS.gene05010	MS.gene90135	0.809638	1.71E-50	-1.69E-46
MS.gene050122	MS.gene90135	0.83926	1.76E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90135.t1	MTR_2g081090	96.774	62	2	0	1	62	34	95	9.87e-38	125
MS.gene90135.t1	MTR_2g081090	96.296	54	2	0	9	62	15	68	1.10e-31	109
MS.gene90135.t1	MTR_5g097280	69.565	69	14	1	1	62	30	98	6.34e-26	95.5
MS.gene90135.t1	MTR_4g094605	65.753	73	14	1	1	62	27	99	9.99e-26	94.7
MS.gene90135.t1	MTR_6g012080	89.583	48	5	0	15	62	51	98	1.35e-25	94.7
MS.gene90135.t1	MTR_6g012110	89.583	48	5	0	15	62	51	98	1.35e-25	94.7
MS.gene90135.t1	MTR_6g011880	89.583	48	5	0	15	62	51	98	1.65e-25	94.4
MS.gene90135.t1	MTR_6g011870	89.583	48	5	0	15	62	51	98	1.72e-25	94.4
MS.gene90135.t1	MTR_6g011890	87.500	48	6	0	15	62	51	98	4.53e-25	93.2
MS.gene90135.t1	MTR_6g043600	85.417	48	7	0	15	62	35	82	3.10e-24	90.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90135.t1	AT5G54270	85.484	62	9	0	1	62	35	96	8.00e-34	115
MS.gene90135.t1	AT2G05070	79.245	53	11	0	10	62	46	98	2.51e-24	91.3
MS.gene90135.t1	AT2G05100	82.353	51	9	0	12	62	48	98	2.65e-24	91.3
MS.gene90135.t1	AT1G29930	62.500	72	17	1	1	62	28	99	2.77e-24	91.3
MS.gene90135.t1	AT1G29920	62.500	72	17	1	1	62	28	99	2.92e-24	91.3
MS.gene90135.t1	AT1G29910	62.500	72	17	1	1	62	28	99	2.92e-24	91.3
MS.gene90135.t1	AT3G27690	79.245	53	11	0	10	62	47	99	3.19e-24	90.9
MS.gene90135.t1	AT3G27690	87.500	48	6	0	15	62	84	131	4.78e-24	91.3
MS.gene90135.t1	AT2G05100	79.245	53	11	0	10	62	46	98	5.75e-24	91.3
MS.gene90135.t1	AT2G34420	62.500	72	17	1	1	62	26	97	8.78e-24	89.7

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Find 24 sgRNAs with CRISPR-Local

Find 41 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATACCATAGTGAATCTTG+AGG	0.669239	2.3:-17344963	None:intergenic
AACCTCAAGAGCCCTGTTCT+TGG	0.335763	2.3:-17345722	None:intergenic
AAGGGAAATGAATTGTGTAT+GGG	0.663509	2.3:+17345577	MS.gene90135:intron
AATTCCCTGGTGATTATGGA+TGG	0.526464	2.3:+17345662	MS.gene90135:CDS
AATTCTCCAGTTAAGTATGA+AGG	0.558241	2.3:-17345643	None:intergenic
ACCAGACAGAGTGAAATATT+TGG	0.277826	2.3:+17345600	MS.gene90135:CDS
AGAAGCATTTGCCAAGAACA+GGG	0.625251	2.3:+17345711	MS.gene90135:CDS
AGTGAATCTTGAGGTTCCCA+TGG	0.607906	2.3:-17344954	None:intergenic
ATTCCCTGGTGATTATGGAT+GGG	0.621810	2.3:+17345663	MS.gene90135:CDS
CAGAAGCATTTGCCAAGAAC+AGG	0.372548	2.3:+17345710	MS.gene90135:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATACCATAGTGAATCTTG+AGG	-	chr2.3:17344966-17344985	None:intergenic	30.0%
AAATGTGTGATGCTACTAAT+TGG	+	chr2.3:17345054-17345073	MS.gene90135:intron	30.0%
AAGGGAAATGAATTGTGTAT+GGG	+	chr2.3:17345577-17345596	MS.gene90135:intron	30.0%
AATTCTCCAGTTAAGTATGA+AGG	-	chr2.3:17345646-17345665	None:intergenic	30.0%
ATGCTTTATGGCCAATTATA+TGG	-	chr2.3:17345322-17345341	None:intergenic	30.0%
ATTGTGTTTGTGATTGTGAA+GGG	+	chr2.3:17345559-17345578	MS.gene90135:intron	30.0%
TAACTAATGATAGACACGTT+CGG	+	chr2.3:17345405-17345424	MS.gene90135:intron	30.0%
TTAGTAGCATCACACATTTA+AGG	-	chr2.3:17345053-17345072	None:intergenic	30.0%
TTTGTTTCGCACCATATAAT+TGG	+	chr2.3:17345308-17345327	MS.gene90135:intron	30.0%
AACTAATGATAGACACGTTC+GGG	+	chr2.3:17345406-17345425	MS.gene90135:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	17344956	17345741	17344956	ID=MS.gene90135
chr2.3	mRNA	17344956	17345741	17344956	ID=MS.gene90135.t1;Parent=MS.gene90135
chr2.3	exon	17344956	17344979	17344956	ID=MS.gene90135.t1.exon1;Parent=MS.gene90135.t1
chr2.3	CDS	17344956	17344979	17344956	ID=cds.MS.gene90135.t1;Parent=MS.gene90135.t1
chr2.3	exon	17345580	17345741	17345580	ID=MS.gene90135.t1.exon2;Parent=MS.gene90135.t1
chr2.3	CDS	17345580	17345741	17345580	ID=cds.MS.gene90135.t1;Parent=MS.gene90135.t1

Gene Sequence

>MS.gene90135

ATGGGAACCTCAAGATTCACTATGGTATTTCCTCTTTTCCCTATTTTTTTAGTAAAAATTTCACTATATTTATAGAATAAACATTCATTTTAGTCCTTAAATGTGTGATGCTACTAATTGGTCTAACTAACTTAGTGTGACCAATATTGTATCTAATAATTAATAAAGTATGATTTTGTCTCCCTCAAAAAAAAAGTATGATTTTGTCTAATGTGCACACAAGTAAAATTCACTTGCTTGCACCTGCACAAGTATGTTTTTTTATCATTGGATCAATAAGTAGCATCATATTTCATTCAATTTAATAGTGAGATTTATTGATCAAATTGTAAAACTTATGCATGATGCAAGATTTGTTTCGCACCATATAATTGGCCATAAAGCATATACTTTGTTAGTAATGTTATAGACTAAATTGACTCAAGTTAGGACACATTCAAAAACTAAACTAACTAATGATAGACACGTTCGGGAGTAAAATGACTATAAAAACACGTTTAGATATGTTTTTATTGGTTATACATGCAATGACTAGCACATTTAAGTAGTGAAATAATTGTCTACTTGTATTTATATAGTGTTGCTTATGTGGCTGATACATGCATTGTGTTTGTGATTGTGAAGGGAAATGAATTGTGTATGGGACCAGACAGAGTGAAATATTTGGGGCCATTTTCAGCTCAGACTCCTTCATACTTAACTGGAGAATTCCCTGGTGATTATGGATGGGACACTGCTGGTTTATCTGCTGATCCAGAAGCATTTGCCAAGAACAGGGCTCTTGAG

Protein sequence

>MS.gene90135.t1

MGTSRFTMGNELCMGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALE