Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90135.t1 | XP_003596490.1 | 96.8 | 62 | 2 | 0 | 1 | 62 | 34 | 95 | 2.60E-27 | 130.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90135.t1 | P27489 | 88.7 | 62 | 7 | 0 | 1 | 62 | 35 | 96 | 1.7e-27 | 122.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90135.t1 | G7IR60 | 96.8 | 62 | 2 | 0 | 1 | 62 | 34 | 95 | 1.9e-27 | 130.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049222 | MS.gene90135 | 0.812131 | 4.95E-51 | -1.69E-46 |
| MS.gene049232 | MS.gene90135 | 0.837119 | 6.27E-57 | -1.69E-46 |
| MS.gene049320 | MS.gene90135 | 0.824174 | 9.31E-54 | -1.69E-46 |
| MS.gene049356 | MS.gene90135 | 0.808779 | 2.62E-50 | -1.69E-46 |
| MS.gene049369 | MS.gene90135 | 0.824209 | 9.14E-54 | -1.69E-46 |
| MS.gene049396 | MS.gene90135 | 0.860792 | 1.61E-63 | -1.69E-46 |
| MS.gene049609 | MS.gene90135 | 0.840437 | 8.70E-58 | -1.69E-46 |
| MS.gene049907 | MS.gene90135 | 0.846411 | 2.21E-59 | -1.69E-46 |
| MS.gene05010 | MS.gene90135 | 0.809638 | 1.71E-50 | -1.69E-46 |
| MS.gene050122 | MS.gene90135 | 0.83926 | 1.76E-57 | -1.69E-46 |
| MS.gene050499 | MS.gene90135 | 0.844419 | 7.65E-59 | -1.69E-46 |
| MS.gene050501 | MS.gene90135 | 0.818238 | 2.18E-52 | -1.69E-46 |
| MS.gene050502 | MS.gene90135 | 0.89689 | 2.39E-76 | -1.69E-46 |
| MS.gene050518 | MS.gene90135 | 0.800259 | 1.57E-48 | -1.69E-46 |
| MS.gene050520 | MS.gene90135 | 0.863288 | 2.77E-64 | -1.69E-46 |
| MS.gene050593 | MS.gene90135 | 0.831963 | 1.24E-55 | -1.69E-46 |
| MS.gene050662 | MS.gene90135 | 0.810501 | 1.12E-50 | -1.69E-46 |
| MS.gene050675 | MS.gene90135 | 0.814924 | 1.20E-51 | -1.69E-46 |
| MS.gene050686 | MS.gene90135 | 0.842617 | 2.32E-58 | -1.69E-46 |
| MS.gene050747 | MS.gene90135 | 0.816284 | 5.99E-52 | -1.69E-46 |
| MS.gene050772 | MS.gene90135 | 0.857924 | 1.17E-62 | -1.69E-46 |
| MS.gene050950 | MS.gene90135 | 0.818274 | 2.14E-52 | -1.69E-46 |
| MS.gene050986 | MS.gene90135 | 0.810944 | 8.96E-51 | -1.69E-46 |
| MS.gene05105 | MS.gene90135 | 0.828681 | 7.85E-55 | -1.69E-46 |
| MS.gene05118 | MS.gene90135 | 0.807403 | 5.14E-50 | -1.69E-46 |
| MS.gene051255 | MS.gene90135 | 0.8224 | 2.42E-53 | -1.69E-46 |
| MS.gene051387 | MS.gene90135 | 0.81643 | 5.55E-52 | -1.69E-46 |
| MS.gene051509 | MS.gene90135 | 0.880851 | 3.90E-70 | -1.69E-46 |
| MS.gene051551 | MS.gene90135 | 0.81502 | 1.14E-51 | -1.69E-46 |
| MS.gene051734 | MS.gene90135 | 0.806748 | 7.07E-50 | -1.69E-46 |
| MS.gene052164 | MS.gene90135 | 0.81809 | 2.35E-52 | -1.69E-46 |
| MS.gene052346 | MS.gene90135 | 0.833008 | 6.83E-56 | -1.69E-46 |
| MS.gene052414 | MS.gene90135 | 0.81779 | 2.75E-52 | -1.69E-46 |
| MS.gene052506 | MS.gene90135 | 0.801987 | 6.95E-49 | -1.69E-46 |
| MS.gene052822 | MS.gene90135 | 0.802749 | 4.84E-49 | -1.69E-46 |
| MS.gene052999 | MS.gene90135 | 0.802621 | 5.14E-49 | -1.69E-46 |
| MS.gene053018 | MS.gene90135 | 0.83777 | 4.27E-57 | -1.69E-46 |
| MS.gene053203 | MS.gene90135 | 0.821787 | 3.35E-53 | -1.69E-46 |
| MS.gene053207 | MS.gene90135 | 0.828081 | 1.10E-54 | -1.69E-46 |
| MS.gene053213 | MS.gene90135 | 0.853251 | 2.70E-61 | -1.69E-46 |
| MS.gene053286 | MS.gene90135 | 0.853553 | 2.21E-61 | -1.69E-46 |
| MS.gene053318 | MS.gene90135 | 0.806081 | 9.78E-50 | -1.69E-46 |
| MS.gene053436 | MS.gene90135 | 0.852428 | 4.65E-61 | -1.69E-46 |
| MS.gene053449 | MS.gene90135 | 0.807625 | 4.61E-50 | -1.69E-46 |
| MS.gene053505 | MS.gene90135 | 0.818938 | 1.51E-52 | -1.69E-46 |
| MS.gene053574 | MS.gene90135 | 0.890883 | 6.58E-74 | -1.69E-46 |
| MS.gene053626 | MS.gene90135 | 0.851081 | 1.12E-60 | -1.69E-46 |
| MS.gene053813 | MS.gene90135 | 0.83847 | 2.82E-57 | -1.69E-46 |
| MS.gene054003 | MS.gene90135 | 0.812575 | 3.96E-51 | -1.69E-46 |
| MS.gene054595 | MS.gene90135 | 0.810574 | 1.08E-50 | -1.69E-46 |
| MS.gene054600 | MS.gene90135 | 0.804107 | 2.53E-49 | -1.69E-46 |
| MS.gene054642 | MS.gene90135 | 0.801357 | 9.35E-49 | -1.69E-46 |
| MS.gene054927 | MS.gene90135 | 0.826262 | 2.99E-54 | -1.69E-46 |
| MS.gene05505 | MS.gene90135 | 0.82763 | 1.41E-54 | -1.69E-46 |
| MS.gene055224 | MS.gene90135 | 0.805918 | 1.06E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene90135 | 0.81102 | 8.63E-51 | -1.69E-46 |
| MS.gene055577 | MS.gene90135 | 0.815304 | 9.90E-52 | -1.69E-46 |
| MS.gene055722 | MS.gene90135 | 0.871969 | 4.56E-67 | -1.69E-46 |
| MS.gene055909 | MS.gene90135 | 0.850802 | 1.34E-60 | -1.69E-46 |
| MS.gene055911 | MS.gene90135 | 0.851137 | 1.08E-60 | -1.69E-46 |
| MS.gene05592 | MS.gene90135 | 0.802211 | 6.25E-49 | -1.69E-46 |
| MS.gene05601 | MS.gene90135 | 0.818842 | 1.59E-52 | -1.69E-46 |
| MS.gene056166 | MS.gene90135 | 0.83555 | 1.57E-56 | -1.69E-46 |
| MS.gene056374 | MS.gene90135 | 0.81336 | 2.66E-51 | -1.69E-46 |
| MS.gene056422 | MS.gene90135 | 0.870537 | 1.35E-66 | -1.69E-46 |
| MS.gene056446 | MS.gene90135 | 0.801651 | 8.14E-49 | -1.69E-46 |
| MS.gene056448 | MS.gene90135 | 0.835782 | 1.37E-56 | -1.69E-46 |
| MS.gene056504 | MS.gene90135 | 0.814042 | 1.88E-51 | -1.69E-46 |
| MS.gene056510 | MS.gene90135 | 0.805617 | 1.22E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene90135 | 0.828678 | 7.87E-55 | -1.69E-46 |
| MS.gene05664 | MS.gene90135 | 0.810118 | 1.35E-50 | -1.69E-46 |
| MS.gene056657 | MS.gene90135 | 0.82898 | 6.65E-55 | -1.69E-46 |
| MS.gene05666 | MS.gene90135 | 0.851461 | 8.74E-61 | -1.69E-46 |
| MS.gene056878 | MS.gene90135 | 0.802476 | 5.51E-49 | -1.69E-46 |
| MS.gene056947 | MS.gene90135 | 0.823621 | 1.25E-53 | -1.69E-46 |
| MS.gene057076 | MS.gene90135 | 0.827742 | 1.32E-54 | -1.69E-46 |
| MS.gene057086 | MS.gene90135 | 0.823909 | 1.07E-53 | -1.69E-46 |
| MS.gene057331 | MS.gene90135 | 0.852407 | 4.71E-61 | -1.69E-46 |
| MS.gene057416 | MS.gene90135 | 0.820878 | 5.43E-53 | -1.69E-46 |
| MS.gene057503 | MS.gene90135 | 0.801627 | 8.24E-49 | -1.69E-46 |
| MS.gene057734 | MS.gene90135 | 0.837195 | 6.00E-57 | -1.69E-46 |
| MS.gene05787 | MS.gene90135 | 0.81701 | 4.11E-52 | -1.69E-46 |
| MS.gene057926 | MS.gene90135 | 0.818991 | 1.47E-52 | -1.69E-46 |
| MS.gene058019 | MS.gene90135 | 0.821066 | 4.92E-53 | -1.69E-46 |
| MS.gene058130 | MS.gene90135 | 0.801423 | 9.07E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene90135 | 0.813615 | 2.34E-51 | -1.69E-46 |
| MS.gene058419 | MS.gene90135 | 0.804379 | 2.22E-49 | -1.69E-46 |
| MS.gene058459 | MS.gene90135 | 0.813209 | 2.87E-51 | -1.69E-46 |
| MS.gene058788 | MS.gene90135 | 0.825819 | 3.81E-54 | -1.69E-46 |
| MS.gene058790 | MS.gene90135 | 0.811264 | 7.64E-51 | -1.69E-46 |
| MS.gene058948 | MS.gene90135 | 0.818104 | 2.33E-52 | -1.69E-46 |
| MS.gene058995 | MS.gene90135 | 0.807801 | 4.23E-50 | -1.69E-46 |
| MS.gene05913 | MS.gene90135 | 0.827378 | 1.62E-54 | -1.69E-46 |
| MS.gene059367 | MS.gene90135 | 0.874251 | 7.82E-68 | -1.69E-46 |
| MS.gene059368 | MS.gene90135 | 0.868706 | 5.35E-66 | -1.69E-46 |
| MS.gene059517 | MS.gene90135 | 0.849517 | 3.07E-60 | -1.69E-46 |
| MS.gene059674 | MS.gene90135 | 0.808844 | 2.54E-50 | -1.69E-46 |
| MS.gene059680 | MS.gene90135 | 0.876402 | 1.44E-68 | -1.69E-46 |
| MS.gene059711 | MS.gene90135 | 0.840225 | 9.89E-58 | -1.69E-46 |
| MS.gene059718 | MS.gene90135 | 0.823178 | 1.59E-53 | -1.69E-46 |
| MS.gene059865 | MS.gene90135 | 0.824566 | 7.53E-54 | -1.69E-46 |
| MS.gene060193 | MS.gene90135 | 0.801468 | 8.88E-49 | -1.69E-46 |
| MS.gene060356 | MS.gene90135 | 0.814585 | 1.43E-51 | -1.69E-46 |
| MS.gene060372 | MS.gene90135 | 0.811697 | 6.15E-51 | -1.69E-46 |
| MS.gene060482 | MS.gene90135 | 0.884711 | 1.52E-71 | -1.69E-46 |
| MS.gene060778 | MS.gene90135 | 0.819688 | 1.02E-52 | -1.69E-46 |
| MS.gene06077 | MS.gene90135 | 0.80107 | 1.07E-48 | -1.69E-46 |
| MS.gene060804 | MS.gene90135 | 0.840761 | 7.16E-58 | -1.69E-46 |
| MS.gene060835 | MS.gene90135 | 0.862435 | 5.08E-64 | -1.69E-46 |
| MS.gene060837 | MS.gene90135 | 0.877007 | 8.87E-69 | -1.69E-46 |
| MS.gene06097 | MS.gene90135 | 0.82658 | 2.51E-54 | -1.69E-46 |
| MS.gene060982 | MS.gene90135 | 0.802748 | 4.84E-49 | -1.69E-46 |
| MS.gene061041 | MS.gene90135 | 0.802818 | 4.68E-49 | -1.69E-46 |
| MS.gene061134 | MS.gene90135 | 0.800855 | 1.19E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90135.t1 | MTR_2g081090 | 96.774 | 62 | 2 | 0 | 1 | 62 | 34 | 95 | 9.87e-38 | 125 |
| MS.gene90135.t1 | MTR_2g081090 | 96.296 | 54 | 2 | 0 | 9 | 62 | 15 | 68 | 1.10e-31 | 109 |
| MS.gene90135.t1 | MTR_5g097280 | 69.565 | 69 | 14 | 1 | 1 | 62 | 30 | 98 | 6.34e-26 | 95.5 |
| MS.gene90135.t1 | MTR_4g094605 | 65.753 | 73 | 14 | 1 | 1 | 62 | 27 | 99 | 9.99e-26 | 94.7 |
| MS.gene90135.t1 | MTR_6g012080 | 89.583 | 48 | 5 | 0 | 15 | 62 | 51 | 98 | 1.35e-25 | 94.7 |
| MS.gene90135.t1 | MTR_6g012110 | 89.583 | 48 | 5 | 0 | 15 | 62 | 51 | 98 | 1.35e-25 | 94.7 |
| MS.gene90135.t1 | MTR_6g011880 | 89.583 | 48 | 5 | 0 | 15 | 62 | 51 | 98 | 1.65e-25 | 94.4 |
| MS.gene90135.t1 | MTR_6g011870 | 89.583 | 48 | 5 | 0 | 15 | 62 | 51 | 98 | 1.72e-25 | 94.4 |
| MS.gene90135.t1 | MTR_6g011890 | 87.500 | 48 | 6 | 0 | 15 | 62 | 51 | 98 | 4.53e-25 | 93.2 |
| MS.gene90135.t1 | MTR_6g043600 | 85.417 | 48 | 7 | 0 | 15 | 62 | 35 | 82 | 3.10e-24 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90135.t1 | AT5G54270 | 85.484 | 62 | 9 | 0 | 1 | 62 | 35 | 96 | 8.00e-34 | 115 |
| MS.gene90135.t1 | AT2G05070 | 79.245 | 53 | 11 | 0 | 10 | 62 | 46 | 98 | 2.51e-24 | 91.3 |
| MS.gene90135.t1 | AT2G05100 | 82.353 | 51 | 9 | 0 | 12 | 62 | 48 | 98 | 2.65e-24 | 91.3 |
| MS.gene90135.t1 | AT1G29930 | 62.500 | 72 | 17 | 1 | 1 | 62 | 28 | 99 | 2.77e-24 | 91.3 |
| MS.gene90135.t1 | AT1G29920 | 62.500 | 72 | 17 | 1 | 1 | 62 | 28 | 99 | 2.92e-24 | 91.3 |
| MS.gene90135.t1 | AT1G29910 | 62.500 | 72 | 17 | 1 | 1 | 62 | 28 | 99 | 2.92e-24 | 91.3 |
| MS.gene90135.t1 | AT3G27690 | 79.245 | 53 | 11 | 0 | 10 | 62 | 47 | 99 | 3.19e-24 | 90.9 |
| MS.gene90135.t1 | AT3G27690 | 87.500 | 48 | 6 | 0 | 15 | 62 | 84 | 131 | 4.78e-24 | 91.3 |
| MS.gene90135.t1 | AT2G05100 | 79.245 | 53 | 11 | 0 | 10 | 62 | 46 | 98 | 5.75e-24 | 91.3 |
| MS.gene90135.t1 | AT2G34420 | 62.500 | 72 | 17 | 1 | 1 | 62 | 26 | 97 | 8.78e-24 | 89.7 |
| MS.gene90135.t1 | AT2G34430 | 85.417 | 48 | 7 | 0 | 15 | 62 | 51 | 98 | 1.29e-23 | 89.4 |
Find 24 sgRNAs with CRISPR-Local
Find 41 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTCTTGGCAAATGCTTC+TGG | 0.168930 | 2.3:-17345709 | None:intergenic |
| ACCAGACAGAGTGAAATATT+TGG | 0.277826 | 2.3:+17345600 | MS.gene90135:CDS |
| GGAGAATTCCCTGGTGATTA+TGG | 0.284769 | 2.3:+17345658 | MS.gene90135:CDS |
| CCAGACAGAGTGAAATATTT+GGG | 0.334825 | 2.3:+17345601 | MS.gene90135:CDS |
| AACCTCAAGAGCCCTGTTCT+TGG | 0.335763 | 2.3:-17345722 | None:intergenic |
| CCCAAATATTTCACTCTGTC+TGG | 0.371437 | 2.3:-17345601 | None:intergenic |
| CAGAAGCATTTGCCAAGAAC+AGG | 0.372548 | 2.3:+17345710 | MS.gene90135:CDS |
| CAGACTCCTTCATACTTAAC+TGG | 0.384985 | 2.3:+17345637 | MS.gene90135:CDS |
| GAAGGAGTCTGAGCTGAAAA+TGG | 0.411828 | 2.3:-17345625 | None:intergenic |
| GAAGGGAAATGAATTGTGTA+TGG | 0.465776 | 2.3:+17345576 | MS.gene90135:intron |
| GGGAACCTCAAGATTCACTA+TGG | 0.472897 | 2.3:+17344958 | MS.gene90135:CDS |
| TGCCAAGAACAGGGCTCTTG+AGG | 0.515098 | 2.3:+17345720 | MS.gene90135:CDS |
| AATTCCCTGGTGATTATGGA+TGG | 0.526464 | 2.3:+17345662 | MS.gene90135:CDS |
| TACTTAACTGGAGAATTCCC+TGG | 0.533200 | 2.3:+17345649 | MS.gene90135:CDS |
| GATTATGGATGGGACACTGC+TGG | 0.539551 | 2.3:+17345673 | MS.gene90135:CDS |
| AATTCTCCAGTTAAGTATGA+AGG | 0.558241 | 2.3:-17345643 | None:intergenic |
| GTGTCCCATCCATAATCACC+AGG | 0.560079 | 2.3:-17345667 | None:intergenic |
| AGTGAATCTTGAGGTTCCCA+TGG | 0.607906 | 2.3:-17344954 | None:intergenic |
| ATTCCCTGGTGATTATGGAT+GGG | 0.621810 | 2.3:+17345663 | MS.gene90135:CDS |
| AGAAGCATTTGCCAAGAACA+GGG | 0.625251 | 2.3:+17345711 | MS.gene90135:CDS |
| AAGGGAAATGAATTGTGTAT+GGG | 0.663509 | 2.3:+17345577 | MS.gene90135:intron |
| AAATACCATAGTGAATCTTG+AGG | 0.669239 | 2.3:-17344963 | None:intergenic |
| CAGACAGAGTGAAATATTTG+GGG | 0.720681 | 2.3:+17345602 | MS.gene90135:CDS |
| TGTCCCATCCATAATCACCA+GGG | 0.728458 | 2.3:-17345666 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTATTAGATACAATAT+TGG | - | chr2.3:17345099-17345118 | None:intergenic | 10.0% |
| !!! | GAAATTTTTACTAAAAAAAT+AGG | - | chr2.3:17344998-17345017 | None:intergenic | 10.0% |
| !!! | AAAATCATACTTTTTTTTTG+AGG | - | chr2.3:17345141-17345160 | None:intergenic | 15.0% |
| !!! | AAATCATACTTTTTTTTTGA+GGG | - | chr2.3:17345140-17345159 | None:intergenic | 15.0% |
| !!! | ACGTTTAGATATGTTTTTAT+TGG | + | chr2.3:17345449-17345468 | MS.gene90135:intron | 20.0% |
| !!! | CAAGTATGTTTTTTTATCAT+TGG | + | chr2.3:17345204-17345223 | MS.gene90135:intron | 20.0% |
| ! | ACTAAAAAAATAGGGAAAAG+AGG | - | chr2.3:17344989-17345008 | None:intergenic | 25.0% |
| ! | ATAAAAAAACATACTTGTGC+AGG | - | chr2.3:17345201-17345220 | None:intergenic | 25.0% |
| ! | CTAACAAAGTATATGCTTTA+TGG | - | chr2.3:17345334-17345353 | None:intergenic | 25.0% |
| !!! | TTTATATAGTGTTGCTTATG+TGG | + | chr2.3:17345525-17345544 | MS.gene90135:intron | 25.0% |
| AAATACCATAGTGAATCTTG+AGG | - | chr2.3:17344966-17344985 | None:intergenic | 30.0% | |
| AAATGTGTGATGCTACTAAT+TGG | + | chr2.3:17345054-17345073 | MS.gene90135:intron | 30.0% | |
| AAGGGAAATGAATTGTGTAT+GGG | + | chr2.3:17345577-17345596 | MS.gene90135:intron | 30.0% | |
| AATTCTCCAGTTAAGTATGA+AGG | - | chr2.3:17345646-17345665 | None:intergenic | 30.0% | |
| ATGCTTTATGGCCAATTATA+TGG | - | chr2.3:17345322-17345341 | None:intergenic | 30.0% | |
| ATTGTGTTTGTGATTGTGAA+GGG | + | chr2.3:17345559-17345578 | MS.gene90135:intron | 30.0% | |
| TAACTAATGATAGACACGTT+CGG | + | chr2.3:17345405-17345424 | MS.gene90135:intron | 30.0% | |
| TTAGTAGCATCACACATTTA+AGG | - | chr2.3:17345053-17345072 | None:intergenic | 30.0% | |
| TTTGTTTCGCACCATATAAT+TGG | + | chr2.3:17345308-17345327 | MS.gene90135:intron | 30.0% | |
| ! | AGACTAAATTGACTCAAGTT+AGG | + | chr2.3:17345363-17345382 | MS.gene90135:intron | 30.0% |
| AACTAATGATAGACACGTTC+GGG | + | chr2.3:17345406-17345425 | MS.gene90135:intron | 35.0% | |
| ACCAGACAGAGTGAAATATT+TGG | + | chr2.3:17345600-17345619 | MS.gene90135:CDS | 35.0% | |
| CAGACAGAGTGAAATATTTG+GGG | + | chr2.3:17345602-17345621 | MS.gene90135:CDS | 35.0% | |
| CATTGTGTTTGTGATTGTGA+AGG | + | chr2.3:17345558-17345577 | MS.gene90135:intron | 35.0% | |
| CCAGACAGAGTGAAATATTT+GGG | + | chr2.3:17345601-17345620 | MS.gene90135:CDS | 35.0% | |
| GAAGGGAAATGAATTGTGTA+TGG | + | chr2.3:17345576-17345595 | MS.gene90135:intron | 35.0% | |
| AATTCCCTGGTGATTATGGA+TGG | + | chr2.3:17345662-17345681 | MS.gene90135:CDS | 40.0% | |
| ATTCCCTGGTGATTATGGAT+GGG | + | chr2.3:17345663-17345682 | MS.gene90135:CDS | 40.0% | |
| CAGACTCCTTCATACTTAAC+TGG | + | chr2.3:17345637-17345656 | MS.gene90135:CDS | 40.0% | |
| CCCAAATATTTCACTCTGTC+TGG | - | chr2.3:17345604-17345623 | None:intergenic | 40.0% | |
| TACTTAACTGGAGAATTCCC+TGG | + | chr2.3:17345649-17345668 | MS.gene90135:CDS | 40.0% | |
| !! | AGAAGCATTTGCCAAGAACA+GGG | + | chr2.3:17345711-17345730 | MS.gene90135:CDS | 40.0% |
| CTGTTCTTGGCAAATGCTTC+TGG | - | chr2.3:17345712-17345731 | None:intergenic | 45.0% | |
| GAAGGAGTCTGAGCTGAAAA+TGG | - | chr2.3:17345628-17345647 | None:intergenic | 45.0% | |
| GGAGAATTCCCTGGTGATTA+TGG | + | chr2.3:17345658-17345677 | MS.gene90135:CDS | 45.0% | |
| GGGAACCTCAAGATTCACTA+TGG | + | chr2.3:17344958-17344977 | MS.gene90135:CDS | 45.0% | |
| TGTCCCATCCATAATCACCA+GGG | - | chr2.3:17345669-17345688 | None:intergenic | 45.0% | |
| !! | CAGAAGCATTTGCCAAGAAC+AGG | + | chr2.3:17345710-17345729 | MS.gene90135:CDS | 45.0% |
| !!! | AAATTTTTACTAAAAAAATA+GGG | - | chr2.3:17344997-17345016 | None:intergenic | 5.0% |
| GATTATGGATGGGACACTGC+TGG | + | chr2.3:17345673-17345692 | MS.gene90135:CDS | 50.0% | |
| GTGTCCCATCCATAATCACC+AGG | - | chr2.3:17345670-17345689 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 17344956 | 17345741 | 17344956 | ID=MS.gene90135 |
| chr2.3 | mRNA | 17344956 | 17345741 | 17344956 | ID=MS.gene90135.t1;Parent=MS.gene90135 |
| chr2.3 | exon | 17344956 | 17344979 | 17344956 | ID=MS.gene90135.t1.exon1;Parent=MS.gene90135.t1 |
| chr2.3 | CDS | 17344956 | 17344979 | 17344956 | ID=cds.MS.gene90135.t1;Parent=MS.gene90135.t1 |
| chr2.3 | exon | 17345580 | 17345741 | 17345580 | ID=MS.gene90135.t1.exon2;Parent=MS.gene90135.t1 |
| chr2.3 | CDS | 17345580 | 17345741 | 17345580 | ID=cds.MS.gene90135.t1;Parent=MS.gene90135.t1 |
| Gene Sequence |
| Protein sequence |
