Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90793.t1 | XP_003592798.1 | 85.7 | 175 | 21 | 2 | 1 | 175 | 1 | 171 | 8.20E-63 | 250 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90793.t1 | Q6YUA8 | 71.9 | 121 | 27 | 1 | 62 | 175 | 67 | 187 | 9.3e-31 | 134.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90793.t1 | G7IF33 | 85.7 | 175 | 21 | 2 | 1 | 175 | 1 | 171 | 5.9e-63 | 250.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene90793 | 0.90123 | 3.31E-78 | -1.69E-46 |
| MS.gene049173 | MS.gene90793 | 0.803971 | 2.70E-49 | -1.69E-46 |
| MS.gene049222 | MS.gene90793 | 0.827982 | 1.16E-54 | -1.69E-46 |
| MS.gene049257 | MS.gene90793 | 0.831409 | 1.70E-55 | -1.69E-46 |
| MS.gene049285 | MS.gene90793 | 0.859688 | 3.48E-63 | -1.69E-46 |
| MS.gene049320 | MS.gene90793 | 0.819165 | 1.34E-52 | -1.69E-46 |
| MS.gene049609 | MS.gene90793 | 0.820251 | 7.57E-53 | -1.69E-46 |
| MS.gene049633 | MS.gene90793 | 0.863846 | 1.86E-64 | -1.69E-46 |
| MS.gene050163 | MS.gene90793 | 0.815948 | 7.12E-52 | -1.69E-46 |
| MS.gene050165 | MS.gene90793 | 0.810544 | 1.09E-50 | -1.69E-46 |
| MS.gene050170 | MS.gene90793 | 0.834895 | 2.30E-56 | -1.69E-46 |
| MS.gene050323 | MS.gene90793 | 0.825135 | 5.53E-54 | -1.69E-46 |
| MS.gene050444 | MS.gene90793 | 0.857881 | 1.21E-62 | -1.69E-46 |
| MS.gene050496 | MS.gene90793 | 0.800992 | 1.11E-48 | -1.69E-46 |
| MS.gene050504 | MS.gene90793 | 0.836044 | 1.18E-56 | -1.69E-46 |
| MS.gene050577 | MS.gene90793 | 0.838484 | 2.80E-57 | -1.69E-46 |
| MS.gene050612 | MS.gene90793 | 0.83428 | 3.28E-56 | -1.69E-46 |
| MS.gene050675 | MS.gene90793 | 0.806758 | 7.04E-50 | -1.69E-46 |
| MS.gene050699 | MS.gene90793 | 0.837133 | 6.22E-57 | -1.69E-46 |
| MS.gene050747 | MS.gene90793 | 0.817166 | 3.80E-52 | -1.69E-46 |
| MS.gene050772 | MS.gene90793 | 0.814366 | 1.60E-51 | -1.69E-46 |
| MS.gene05080 | MS.gene90793 | 0.833822 | 4.28E-56 | -1.69E-46 |
| MS.gene05081 | MS.gene90793 | 0.853052 | 3.08E-61 | -1.69E-46 |
| MS.gene050868 | MS.gene90793 | 0.833429 | 5.36E-56 | -1.69E-46 |
| MS.gene050871 | MS.gene90793 | 0.83029 | 3.19E-55 | -1.69E-46 |
| MS.gene050904 | MS.gene90793 | 0.811839 | 5.73E-51 | -1.69E-46 |
| MS.gene050950 | MS.gene90793 | 0.815336 | 9.74E-52 | -1.69E-46 |
| MS.gene050986 | MS.gene90793 | 0.806213 | 9.18E-50 | -1.69E-46 |
| MS.gene051138 | MS.gene90793 | -0.803576 | 3.26E-49 | -1.69E-46 |
| MS.gene051317 | MS.gene90793 | 0.843178 | 1.64E-58 | -1.69E-46 |
| MS.gene051439 | MS.gene90793 | -0.802967 | 4.36E-49 | -1.69E-46 |
| MS.gene051551 | MS.gene90793 | 0.803232 | 3.85E-49 | -1.69E-46 |
| MS.gene051552 | MS.gene90793 | -0.804062 | 2.59E-49 | -1.69E-46 |
| MS.gene051617 | MS.gene90793 | 0.808767 | 2.63E-50 | -1.69E-46 |
| MS.gene051651 | MS.gene90793 | -0.816226 | 6.17E-52 | -1.69E-46 |
| MS.gene051666 | MS.gene90793 | 0.822413 | 2.40E-53 | -1.69E-46 |
| MS.gene051838 | MS.gene90793 | 0.86311 | 3.15E-64 | -1.69E-46 |
| MS.gene051949 | MS.gene90793 | 0.810323 | 1.22E-50 | -1.69E-46 |
| MS.gene052129 | MS.gene90793 | -0.851168 | 1.06E-60 | -1.69E-46 |
| MS.gene052164 | MS.gene90793 | 0.804967 | 1.68E-49 | -1.69E-46 |
| MS.gene052379 | MS.gene90793 | 0.807943 | 3.95E-50 | -1.69E-46 |
| MS.gene052503 | MS.gene90793 | 0.835158 | 1.97E-56 | -1.69E-46 |
| MS.gene052506 | MS.gene90793 | 0.801069 | 1.07E-48 | -1.69E-46 |
| MS.gene052615 | MS.gene90793 | 0.804014 | 2.65E-49 | -1.69E-46 |
| MS.gene052822 | MS.gene90793 | 0.801207 | 1.00E-48 | -1.69E-46 |
| MS.gene052823 | MS.gene90793 | 0.834745 | 2.51E-56 | -1.69E-46 |
| MS.gene052825 | MS.gene90793 | 0.835117 | 2.02E-56 | -1.69E-46 |
| MS.gene052870 | MS.gene90793 | 0.880492 | 5.25E-70 | -1.69E-46 |
| MS.gene052872 | MS.gene90793 | 0.88462 | 1.64E-71 | -1.69E-46 |
| MS.gene052966 | MS.gene90793 | 0.807358 | 5.26E-50 | -1.69E-46 |
| MS.gene053203 | MS.gene90793 | 0.855849 | 4.79E-62 | -1.69E-46 |
| MS.gene053479 | MS.gene90793 | 0.865056 | 7.79E-65 | -1.69E-46 |
| MS.gene053480 | MS.gene90793 | 0.819758 | 9.82E-53 | -1.69E-46 |
| MS.gene053632 | MS.gene90793 | 0.807689 | 4.47E-50 | -1.69E-46 |
| MS.gene053824 | MS.gene90793 | 0.854723 | 1.02E-61 | -1.69E-46 |
| MS.gene054343 | MS.gene90793 | 0.838958 | 2.11E-57 | -1.69E-46 |
| MS.gene054344 | MS.gene90793 | 0.816398 | 5.64E-52 | -1.69E-46 |
| MS.gene054595 | MS.gene90793 | 0.804829 | 1.79E-49 | -1.69E-46 |
| MS.gene054600 | MS.gene90793 | 0.824844 | 6.48E-54 | -1.69E-46 |
| MS.gene054642 | MS.gene90793 | 0.828739 | 7.60E-55 | -1.69E-46 |
| MS.gene054706 | MS.gene90793 | -0.801907 | 7.21E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene90793 | 0.876103 | 1.82E-68 | -1.69E-46 |
| MS.gene054884 | MS.gene90793 | -0.855677 | 5.37E-62 | -1.69E-46 |
| MS.gene054954 | MS.gene90793 | 0.844272 | 8.38E-59 | -1.69E-46 |
| MS.gene055206 | MS.gene90793 | 0.850498 | 1.63E-60 | -1.69E-46 |
| MS.gene055289 | MS.gene90793 | 0.804597 | 2.00E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene90793 | 0.835083 | 2.06E-56 | -1.69E-46 |
| MS.gene055502 | MS.gene90793 | 0.849604 | 2.91E-60 | -1.69E-46 |
| MS.gene055577 | MS.gene90793 | 0.845473 | 3.97E-59 | -1.69E-46 |
| MS.gene055748 | MS.gene90793 | 0.866001 | 3.92E-65 | -1.69E-46 |
| MS.gene055750 | MS.gene90793 | 0.803184 | 3.93E-49 | -1.69E-46 |
| MS.gene055751 | MS.gene90793 | 0.852532 | 4.34E-61 | -1.69E-46 |
| MS.gene05589 | MS.gene90793 | 0.862579 | 4.59E-64 | -1.69E-46 |
| MS.gene055941 | MS.gene90793 | 0.820611 | 6.26E-53 | -1.69E-46 |
| MS.gene056083 | MS.gene90793 | 0.81413 | 1.80E-51 | -1.69E-46 |
| MS.gene056266 | MS.gene90793 | 0.805249 | 1.46E-49 | -1.69E-46 |
| MS.gene056387 | MS.gene90793 | 0.810642 | 1.04E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene90793 | 0.832041 | 1.19E-55 | -1.69E-46 |
| MS.gene056510 | MS.gene90793 | 0.83232 | 1.01E-55 | -1.69E-46 |
| MS.gene056633 | MS.gene90793 | 0.810375 | 1.19E-50 | -1.69E-46 |
| MS.gene056657 | MS.gene90793 | 0.815003 | 1.16E-51 | -1.69E-46 |
| MS.gene056678 | MS.gene90793 | -0.818804 | 1.62E-52 | -1.69E-46 |
| MS.gene056692 | MS.gene90793 | 0.827859 | 1.24E-54 | -1.69E-46 |
| MS.gene056694 | MS.gene90793 | -0.812807 | 3.52E-51 | -1.69E-46 |
| MS.gene056697 | MS.gene90793 | -0.817812 | 2.72E-52 | -1.69E-46 |
| MS.gene056856 | MS.gene90793 | -0.812464 | 4.19E-51 | -1.69E-46 |
| MS.gene056877 | MS.gene90793 | 0.812038 | 5.18E-51 | -1.69E-46 |
| MS.gene056898 | MS.gene90793 | 0.808906 | 2.46E-50 | -1.69E-46 |
| MS.gene057196 | MS.gene90793 | 0.837287 | 5.68E-57 | -1.69E-46 |
| MS.gene057332 | MS.gene90793 | 0.858201 | 9.69E-63 | -1.69E-46 |
| MS.gene057416 | MS.gene90793 | 0.820111 | 8.15E-53 | -1.69E-46 |
| MS.gene057658 | MS.gene90793 | 0.88189 | 1.65E-70 | -1.69E-46 |
| MS.gene057831 | MS.gene90793 | 0.8368 | 7.57E-57 | -1.69E-46 |
| MS.gene057856 | MS.gene90793 | 0.800312 | 1.53E-48 | -1.69E-46 |
| MS.gene058334 | MS.gene90793 | -0.832072 | 1.16E-55 | -1.69E-46 |
| MS.gene058338 | MS.gene90793 | 0.821841 | 3.26E-53 | -1.69E-46 |
| MS.gene05837 | MS.gene90793 | 0.822853 | 1.90E-53 | -1.69E-46 |
| MS.gene058418 | MS.gene90793 | -0.829475 | 5.04E-55 | -1.69E-46 |
| MS.gene058419 | MS.gene90793 | 0.851656 | 7.70E-61 | -1.69E-46 |
| MS.gene058544 | MS.gene90793 | 0.882232 | 1.24E-70 | -1.69E-46 |
| MS.gene058723 | MS.gene90793 | 0.801393 | 9.20E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene90793 | 0.836602 | 8.50E-57 | -1.69E-46 |
| MS.gene058838 | MS.gene90793 | 0.87985 | 8.90E-70 | -1.69E-46 |
| MS.gene059022 | MS.gene90793 | 0.837883 | 4.00E-57 | -1.69E-46 |
| MS.gene059023 | MS.gene90793 | 0.892837 | 1.10E-74 | -1.69E-46 |
| MS.gene05914 | MS.gene90793 | 0.88254 | 9.57E-71 | -1.69E-46 |
| MS.gene05926 | MS.gene90793 | -0.808126 | 3.61E-50 | -1.69E-46 |
| MS.gene05934 | MS.gene90793 | 0.819044 | 1.43E-52 | -1.69E-46 |
| MS.gene059677 | MS.gene90793 | 0.859163 | 5.00E-63 | -1.69E-46 |
| MS.gene059718 | MS.gene90793 | 0.832926 | 7.15E-56 | -1.69E-46 |
| MS.gene059756 | MS.gene90793 | 0.859361 | 4.36E-63 | -1.69E-46 |
| MS.gene059865 | MS.gene90793 | 0.821429 | 4.06E-53 | -1.69E-46 |
| MS.gene06000 | MS.gene90793 | 0.826385 | 2.79E-54 | -1.69E-46 |
| MS.gene060405 | MS.gene90793 | -0.809894 | 1.51E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene90793 | 0.87319 | 1.78E-67 | -1.69E-46 |
| MS.gene06077 | MS.gene90793 | 0.828055 | 1.11E-54 | -1.69E-46 |
| MS.gene06092 | MS.gene90793 | 0.843189 | 1.63E-58 | -1.69E-46 |
| MS.gene060982 | MS.gene90793 | 0.841336 | 5.05E-58 | -1.69E-46 |
| MS.gene061044 | MS.gene90793 | -0.831978 | 1.23E-55 | -1.69E-46 |
| MS.gene061150 | MS.gene90793 | 0.88425 | 2.25E-71 | -1.69E-46 |
| MS.gene061231 | MS.gene90793 | 0.848234 | 6.98E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90793.t1 | MTR_1g116170 | 89.143 | 175 | 15 | 2 | 1 | 175 | 1 | 171 | 5.14e-109 | 308 |
| MS.gene90793.t1 | MTR_1g116170 | 85.714 | 133 | 15 | 2 | 1 | 133 | 1 | 129 | 4.97e-77 | 226 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90793.t1 | AT2G34860 | 56.069 | 173 | 64 | 4 | 15 | 175 | 14 | 186 | 6.15e-59 | 182 |
| MS.gene90793.t1 | AT2G34860 | 56.069 | 173 | 64 | 4 | 15 | 175 | 14 | 186 | 6.15e-59 | 182 |
Find 40 sgRNAs with CRISPR-Local
Find 49 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATACCTTCTTCTAAGAAT+TGG | 0.272269 | 1.4:+88155735 | None:intergenic |
| CTTGTCTGCCCTGTTTGTTT+AGG | 0.322236 | 1.4:-88155844 | MS.gene90793:CDS |
| ACTGAATGTCCTAATTGTTA+TGG | 0.323214 | 1.4:-88155877 | MS.gene90793:CDS |
| CGGAATGGATTGCAATTTGC+AGG | 0.323737 | 1.4:-88156457 | None:intergenic |
| CTGAGAAGACCTTTATTGTT+TGG | 0.336791 | 1.4:+88155811 | None:intergenic |
| TTTCCTCGACCATAACAATT+AGG | 0.345884 | 1.4:+88155868 | None:intergenic |
| TGCCCTGTTTGTTTAGGAAC+TGG | 0.352275 | 1.4:-88155838 | MS.gene90793:CDS |
| CTGCTTGATAAGATGTATAA+TGG | 0.353896 | 1.4:-88155769 | MS.gene90793:CDS |
| GAAAATGGAAAGCTCTTAAC+AGG | 0.369385 | 1.4:-88155927 | MS.gene90793:CDS |
| TCAAGCAGTTTCTTTGCATC+AGG | 0.377519 | 1.4:+88155784 | None:intergenic |
| CATACCTTCTTCTAAGAATT+GGG | 0.381922 | 1.4:+88155736 | None:intergenic |
| TGTGTGGTGGTACAGGAAAA+TGG | 0.392406 | 1.4:-88155942 | MS.gene90793:CDS |
| ACTGGTGTGCCAAACAATAA+AGG | 0.405844 | 1.4:-88155820 | MS.gene90793:CDS |
| ACACCAGTTCCTAAACAAAC+AGG | 0.409014 | 1.4:+88155835 | None:intergenic |
| AGTTGGAAGAGGAGGAAGAG+TGG | 0.470888 | 1.4:+88156331 | None:intergenic |
| ACCGCTCTTGATAAACCTCC+AGG | 0.498198 | 1.4:-88156122 | MS.gene90793:CDS |
| CCACCACAATTTCTGCAACC+TGG | 0.498937 | 1.4:+88156104 | None:intergenic |
| GTTTGTTTGATAAAAGAAGT+TGG | 0.500841 | 1.4:+88156408 | None:intergenic |
| TCCACTCTTCCTCAAAATCA+AGG | 0.504399 | 1.4:-88156357 | MS.gene90793:CDS |
| CAAACAATAAAGGTCTTCTC+AGG | 0.512552 | 1.4:-88155810 | MS.gene90793:CDS |
| GGTGATATGTGTGGTGGTAC+AGG | 0.517437 | 1.4:-88155949 | MS.gene90793:CDS |
| TGCAGAAATTGTGGTGGAAG+TGG | 0.524731 | 1.4:-88156098 | MS.gene90793:CDS |
| TCTTCTAAGAATTGGGAAGT+AGG | 0.526104 | 1.4:+88155743 | None:intergenic |
| ACATACCTTGGAGTTGGAAG+AGG | 0.537745 | 1.4:+88156320 | None:intergenic |
| TGATAAAAGAAGTTGGAGGA+AGG | 0.545348 | 1.4:+88156415 | None:intergenic |
| TGTCCTAATTGTTATGGTCG+AGG | 0.554383 | 1.4:-88155871 | MS.gene90793:CDS |
| CCTCCAGGTTGCAGAAATTG+TGG | 0.558014 | 1.4:-88156107 | MS.gene90793:CDS |
| ATACATACATACCTTGGAGT+TGG | 0.560487 | 1.4:+88156314 | None:intergenic |
| ACATACATACATACATACCT+TGG | 0.567889 | 1.4:+88156308 | None:intergenic |
| TACCTTGGAGTTGGAAGAGG+AGG | 0.582188 | 1.4:+88156323 | None:intergenic |
| TTCCTCCTCTTCCAACTCCA+AGG | 0.584619 | 1.4:-88156325 | MS.gene90793:CDS |
| ACCTGGAGGTTTATCAAGAG+CGG | 0.598366 | 1.4:+88156121 | None:intergenic |
| CATTTAGGTGATATGTGTGG+TGG | 0.616105 | 1.4:-88155955 | MS.gene90793:intron |
| ACAATAAAGGTCTTCTCAGG+AGG | 0.622506 | 1.4:-88155807 | MS.gene90793:CDS |
| CCACAATTTCTGCAACCTGG+AGG | 0.630868 | 1.4:+88156107 | None:intergenic |
| CCAGGTTGCAGAAATTGTGG+TGG | 0.631837 | 1.4:-88156104 | MS.gene90793:CDS |
| TTTCATTTAGGTGATATGTG+TGG | 0.652582 | 1.4:-88155958 | MS.gene90793:intron |
| CACCAGTTCCTAAACAAACA+GGG | 0.654127 | 1.4:+88155836 | None:intergenic |
| TGTTTGATAAAAGAAGTTGG+AGG | 0.669703 | 1.4:+88156411 | None:intergenic |
| GAAGTTGGAGGAAGGCATCG+AGG | 0.706960 | 1.4:+88156423 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGTTGCATTAATTAAAAA+TGG | + | chr1.4:88156048-88156067 | None:intergenic | 15.0% |
| !!! | TACTACTTTTGATTTCATTT+AGG | - | chr1.4:88156230-88156249 | MS.gene90793:intron | 20.0% |
| ! | ATATCATATGATATGAATGC+AGG | - | chr1.4:88155948-88155967 | MS.gene90793:CDS | 25.0% |
| ! | GTTTGTTTGATAAAAGAAGT+TGG | + | chr1.4:88155795-88155814 | None:intergenic | 25.0% |
| !! | ACTTCTTTTATCAAACAAAC+AGG | - | chr1.4:88155795-88155814 | MS.gene90793:CDS | 25.0% |
| ACATACATACATACATACCT+TGG | + | chr1.4:88155895-88155914 | None:intergenic | 30.0% | |
| ACTGAATGTCCTAATTGTTA+TGG | - | chr1.4:88156323-88156342 | MS.gene90793:CDS | 30.0% | |
| CTGCTTGATAAGATGTATAA+TGG | - | chr1.4:88156431-88156450 | MS.gene90793:CDS | 30.0% | |
| TGATTATGAGAAAAGAGAAG+AGG | + | chr1.4:88156145-88156164 | None:intergenic | 30.0% | |
| TGTTTGATAAAAGAAGTTGG+AGG | + | chr1.4:88155792-88155811 | None:intergenic | 30.0% | |
| TTTCATTTAGGTGATATGTG+TGG | - | chr1.4:88156242-88156261 | MS.gene90793:intron | 30.0% | |
| ! | CTTTTATCAAACAAACAGGA+AGG | - | chr1.4:88155799-88155818 | MS.gene90793:CDS | 30.0% |
| ATACATACATACCTTGGAGT+TGG | + | chr1.4:88155889-88155908 | None:intergenic | 35.0% | |
| CAAACAATAAAGGTCTTCTC+AGG | - | chr1.4:88156390-88156409 | MS.gene90793:CDS | 35.0% | |
| CTGAGAAGACCTTTATTGTT+TGG | + | chr1.4:88156392-88156411 | None:intergenic | 35.0% | |
| GAAAATGGAAAGCTCTTAAC+AGG | - | chr1.4:88156273-88156292 | MS.gene90793:intron | 35.0% | |
| TGATAAAAGAAGTTGGAGGA+AGG | + | chr1.4:88155788-88155807 | None:intergenic | 35.0% | |
| TTTCCTCGACCATAACAATT+AGG | + | chr1.4:88156335-88156354 | None:intergenic | 35.0% | |
| ACAATAAAGGTCTTCTCAGG+AGG | - | chr1.4:88156393-88156412 | MS.gene90793:CDS | 40.0% | |
| ACACCAGTTCCTAAACAAAC+AGG | + | chr1.4:88156368-88156387 | None:intergenic | 40.0% | |
| ACTGGTGTGCCAAACAATAA+AGG | - | chr1.4:88156380-88156399 | MS.gene90793:CDS | 40.0% | |
| CACCAGTTCCTAAACAAACA+GGG | + | chr1.4:88156367-88156386 | None:intergenic | 40.0% | |
| CATTTAGGTGATATGTGTGG+TGG | - | chr1.4:88156245-88156264 | MS.gene90793:intron | 40.0% | |
| GCCTGGAAACAACATTTACT+GGG | + | chr1.4:88155996-88156015 | None:intergenic | 40.0% | |
| GGAAGAAGAAGAAGAAGAAG+TGG | - | chr1.4:88155969-88155988 | MS.gene90793:intron | 40.0% | |
| TCAAGCAGTTTCTTTGCATC+AGG | + | chr1.4:88156419-88156438 | None:intergenic | 40.0% | |
| TCCACTCTTCCTCAAAATCA+AGG | - | chr1.4:88155843-88155862 | MS.gene90793:CDS | 40.0% | |
| TGTCCTAATTGTTATGGTCG+AGG | - | chr1.4:88156329-88156348 | MS.gene90793:CDS | 40.0% | |
| ! | ACATTTAAGACATTGACGCC+TGG | + | chr1.4:88156013-88156032 | None:intergenic | 40.0% |
| !! | TCCCAGTAAATGTTGTTTCC+AGG | - | chr1.4:88155992-88156011 | MS.gene90793:intron | 40.0% |
| !! | TCCTTGATTTTGAGGAAGAG+TGG | + | chr1.4:88155847-88155866 | None:intergenic | 40.0% |
| ACATACCTTGGAGTTGGAAG+AGG | + | chr1.4:88155883-88155902 | None:intergenic | 45.0% | |
| ACCTGGAGGTTTATCAAGAG+CGG | + | chr1.4:88156082-88156101 | None:intergenic | 45.0% | |
| CGCCTGGAAACAACATTTAC+TGG | + | chr1.4:88155997-88156016 | None:intergenic | 45.0% | |
| CTTGTCTGCCCTGTTTGTTT+AGG | - | chr1.4:88156356-88156375 | MS.gene90793:CDS | 45.0% | |
| TGCCCTGTTTGTTTAGGAAC+TGG | - | chr1.4:88156362-88156381 | MS.gene90793:CDS | 45.0% | |
| TGTGTGGTGGTACAGGAAAA+TGG | - | chr1.4:88156258-88156277 | MS.gene90793:intron | 45.0% | |
| ! | GAGTGGTGTCCTTGATTTTG+AGG | + | chr1.4:88155855-88155874 | None:intergenic | 45.0% |
| ! | TGCAGAAATTGTGGTGGAAG+TGG | - | chr1.4:88156102-88156121 | MS.gene90793:CDS | 45.0% |
| ACCGCTCTTGATAAACCTCC+AGG | - | chr1.4:88156078-88156097 | MS.gene90793:intron | 50.0% | |
| AGTTGGAAGAGGAGGAAGAG+TGG | + | chr1.4:88155872-88155891 | None:intergenic | 50.0% | |
| CCACAATTTCTGCAACCTGG+AGG | + | chr1.4:88156096-88156115 | None:intergenic | 50.0% | |
| CCACCACAATTTCTGCAACC+TGG | + | chr1.4:88156099-88156118 | None:intergenic | 50.0% | |
| CCAGGTTGCAGAAATTGTGG+TGG | - | chr1.4:88156096-88156115 | MS.gene90793:CDS | 50.0% | |
| CCTCCAGGTTGCAGAAATTG+TGG | - | chr1.4:88156093-88156112 | MS.gene90793:CDS | 50.0% | |
| GGTGATATGTGTGGTGGTAC+AGG | - | chr1.4:88156251-88156270 | MS.gene90793:intron | 50.0% | |
| TACCTTGGAGTTGGAAGAGG+AGG | + | chr1.4:88155880-88155899 | None:intergenic | 50.0% | |
| TTCCTCCTCTTCCAACTCCA+AGG | - | chr1.4:88155875-88155894 | MS.gene90793:CDS | 50.0% | |
| !! | GAAGTTGGAGGAAGGCATCG+AGG | + | chr1.4:88155780-88155799 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 88155747 | 88156475 | 88155747 | ID=MS.gene90793 |
| chr1.4 | mRNA | 88155747 | 88156475 | 88155747 | ID=MS.gene90793.t1;Parent=MS.gene90793 |
| chr1.4 | exon | 88156294 | 88156475 | 88156294 | ID=MS.gene90793.t1.exon1;Parent=MS.gene90793.t1 |
| chr1.4 | CDS | 88156294 | 88156475 | 88156294 | ID=cds.MS.gene90793.t1;Parent=MS.gene90793.t1 |
| chr1.4 | exon | 88156087 | 88156208 | 88156087 | ID=MS.gene90793.t1.exon2;Parent=MS.gene90793.t1 |
| chr1.4 | CDS | 88156087 | 88156208 | 88156087 | ID=cds.MS.gene90793.t1;Parent=MS.gene90793.t1 |
| chr1.4 | exon | 88155747 | 88155970 | 88155747 | ID=MS.gene90793.t1.exon3;Parent=MS.gene90793.t1 |
| chr1.4 | CDS | 88155747 | 88155970 | 88155747 | ID=cds.MS.gene90793.t1;Parent=MS.gene90793.t1 |
| Gene Sequence |
| Protein sequence |
