AlfalfaGEDB | MsG0380016933.01

M. sativa cultivar ZhongmuNo.1 / MsG0380016933.01

KEGG: -
GO: GO:0016829 GO:0017009
PFAM: PF06206

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016933.01.T01	XP_003602739.1	97.748	222	5	0	1	222	1	222	3.07E-161	457
MsG0380016933.01.T02	KAG5050052.1	80.612	98	19	0	6	103	5	102	3.04E-49	167

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016933.01.T01	Q9FI46	79.464	224	44	1	1	222	1	224	1.25E-135	385
MsG0380016933.01.T02	Q9FI46	71.429	98	26	1	1	96	1	98	6.69E-44	146

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016933.01.T01	G7J389	97.748	222	5	0	1	222	1	222	1.47e-161	457
MsG0380016933.01.T02	A0A445L340	84.615	91	14	0	6	96	5	95	8.40e-49	165

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048887.01	MsG0380016933.01	0.800144	1.654055e-48	7.644480e-46
MsG0080048919.01	MsG0380016933.01	0.805634	1.214123e-49	6.455917e-47
MsG0080048986.01	MsG0380016933.01	0.812238	4.688854e-51	2.965314e-48
MsG0080049023.01	MsG0380016933.01	0.805120	1.555807e-49	8.164292e-47
MsG0080049133.01	MsG0380016933.01	0.811665	6.250426e-51	3.891960e-48
MsG0180002099.01	MsG0380016933.01	0.803070	4.154298e-49	2.067872e-46
MsG0180002454.01	MsG0380016933.01	0.809855	1.539589e-50	9.139736e-48
MsG0180002982.01	MsG0380016933.01	0.817893	2.604171e-52	1.920228e-49
MsG0180003351.01	MsG0380016933.01	0.846538	2.040098e-59	3.522816e-56
MsG0180003758.01	MsG0380016933.01	0.836873	7.250956e-57	9.258339e-54

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016933.01.T01	MTR_3g098510	97.748	222	5	0	1	222	1	222	3.72e-165	457
MsG0380016933.01.T02	MTR_3g098510	94.792	96	5	0	1	96	1	96	1.75e-49	158

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016933.01.T01	AT5G51020	79.464	224	44	1	1	222	1	224	1.28e-136	385
MsG0380016933.01.T02	AT5G51020	71.429	98	26	1	1	96	1	98	6.83e-45	146

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Find 43 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTCCTATATTATGAGC+AGG	0.561090	3:+89594765	MsG0380016933.01.T01:CDS
AAATTTCTGTGATCGGCCAA+AGG	0.621478	3:+89596016	MsG0380016933.01.T01:CDS
AATTAGGAAATCCTCCGGGT+GGG	0.600949	3:-89597304	None:intergenic
ACAACCAGAAGAAGTCATTG+GGG	0.750751	3:+89596049	MsG0380016933.01.T01:CDS
ACATCACATTTCAACTCTTT+TGG	0.197133	3:-89595103	None:intergenic
ACCTGGCGAAAGGGTTTCTG+TGG	0.572687	3:-89594899	None:intergenic
AGAACAATGAGATACACACC+TGG	0.699199	3:+89597459	MsG0380016933.01.T01:CDS
AGAGTTGAAATGTGATGTTG+AGG	0.695193	3:+89595108	MsG0380016933.01.T01:CDS
AGTCTACCAACCTGGCGAAA+GGG	0.540376	3:-89594908	None:intergenic
ATATGCCATCAGAGACATGG+AGG	0.729438	3:+89595986	MsG0380016933.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGTGACAATTGATACCA+AGG	-	Chr3:89596511-89596530	None:intergenic	30.0%
AAATGTCCTATATTATGAGC+AGG	+	Chr3:89594765-89594784	MsG0380016933.01.T01:CDS	30.0%
AACAAGTATCCCTATAATGT+AGG	-	Chr3:89595862-89595881	None:intergenic	30.0%
AAGGAAGATCAACTACTAAA+AGG	-	Chr3:89597186-89597205	None:intergenic	30.0%
AAGTAGGGTATAAAGAAGTA+TGG	+	Chr3:89596275-89596294	MsG0380016933.01.T01:intron	30.0%
ACAAGTATCCCTATAATGTA+GGG	-	Chr3:89595861-89595880	None:intergenic	30.0%
ACTTATCCAATACTTGAACA+AGG	+	Chr3:89597147-89597166	MsG0380016933.01.T01:intron	30.0%
AGAATTGATGAGAGAAAATG+GGG	+	Chr3:89596796-89596815	MsG0380016933.01.T01:intron	30.0%
AGTTTACGTCTTTAATGACT+TGG	+	Chr3:89597011-89597030	MsG0380016933.01.T01:intron	30.0%
ATAATGATAAACTCCCTCTA+TGG	-	Chr3:89595582-89595601	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	89594048	89597574	89594048	ID=MsG0380016933.01;Name=MsG0380016933.01
Chr3	mRNA	89594048	89597574	89594048	ID=MsG0380016933.01.T01;Parent=MsG0380016933.01;Name=MsG0380016933.01.T01;_AED=0.47;_eAED=0.50;_QI=279\|1\|0.87\|1\|0.57\|0.75\|8\|0\|241
Chr3	exon	89594726	89594786	89594726	ID=MsG0380016933.01.T01:exon:20548;Parent=MsG0380016933.01.T01
Chr3	exon	89594884	89594919	89594884	ID=MsG0380016933.01.T01:exon:20549;Parent=MsG0380016933.01.T01
Chr3	exon	89595079	89595129	89595079	ID=MsG0380016933.01.T01:exon:20550;Parent=MsG0380016933.01.T01
Chr3	exon	89595978	89596070	89595978	ID=MsG0380016933.01.T01:exon:20551;Parent=MsG0380016933.01.T01
Chr3	exon	89597227	89597331	89597227	ID=MsG0380016933.01.T01:exon:20552;Parent=MsG0380016933.01.T01
Chr3	exon	89597419	89597574	89597419	ID=MsG0380016933.01.T01:exon:20553;Parent=MsG0380016933.01.T01
Chr3	five_prime_UTR	89594048	89594326	89594048	ID=MsG0380016933.01.T01:five_prime_utr;Parent=MsG0380016933.01.T01
Chr3	CDS	89594327	89594500	89594327	ID=MsG0380016933.01.T01:cds;Parent=MsG0380016933.01.T01
Chr3	CDS	89594582	89594631	89594582	ID=MsG0380016933.01.T01:cds;Parent=MsG0380016933.01.T01
Chr3	CDS	89594726	89594786	89594726	ID=MsG0380016933.01.T01:cds;Parent=MsG0380016933.01.T01
Chr3	CDS	89594884	89594919	89594884	ID=MsG0380016933.01.T01:cds;Parent=MsG0380016933.01.T01
Chr3	CDS	89595079	89595129	89595079	ID=MsG0380016933.01.T01:cds;Parent=MsG0380016933.01.T01
Chr3	CDS	89595978	89596070	89595978	ID=MsG0380016933.01.T01:cds;Parent=MsG0380016933.01.T01
Chr3	CDS	89597227	89597331	89597227	ID=MsG0380016933.01.T01:cds;Parent=MsG0380016933.01.T01
Chr3	CDS	89597419	89597574	89597419	ID=MsG0380016933.01.T01:cds;Parent=MsG0380016933.01.T01
Chr3	mRNA	89594048	89594825	89594048	ID=MsG0380016933.01.T02;Parent=MsG0380016933.01;Name=MsG0380016933.01.T02;_AED=0.48;_eAED=0.50;_QI=279\|1\|0.66\|1\|1\|1\|3\|0\|107
Chr3	exon	89594726	89594825	89594726	ID=MsG0380016933.01.T02:exon:20554;Parent=MsG0380016933.01.T02
Chr3	five_prime_UTR	89594048	89594326	89594048	ID=MsG0380016933.01.T02:five_prime_utr;Parent=MsG0380016933.01.T02
Chr3	CDS	89594327	89594500	89594327	ID=MsG0380016933.01.T02:cds;Parent=MsG0380016933.01.T02
Chr3	CDS	89594582	89594631	89594582	ID=MsG0380016933.01.T02:cds;Parent=MsG0380016933.01.T02
Chr3	CDS	89594726	89594825	89594726	ID=MsG0380016933.01.T02:cds;Parent=MsG0380016933.01.T02

Gene Sequence

>MsG0380016933.01.T01

ATGTGTACGGAATCCGAATCCGATTCCAATTCCAATGGATGGAATCGTGCTCAAGGATTAGCTCTCAAGGCTCTCTTACTCCTCGGTGGCGCTCTTCTCGTCAAACGTCTTCGTAAGTCTACCACTCGCTGGGACCATACTCGTTTAGTCACTCAATCACTCACCGGCGAAAAGTATTCCAAGGACCAAGCTTCCAGAGACCCTGATAACTATTTCAATATTAGAATGCTTACATGTCCAGCTGCTGAGCTAGTTGATGGTTCAAATGTCCTATATTATGAGCAGGCTTTTTGGAGGAGTCCACAGAAACCCTTTCGCCAGAGGCTGTTAATGACGAAACCTTGTCCAAAAGAGTTGAAATGTGATGTTGAGTTAAGTACATATGCCATCAGAGACATGGAGGAATACAAAAATTTCTGTGATCGGCCAAAGGATCAGCGCCCACAACCAGAAGAAGTCATTGGGGATATTGGAGAACATTTGACAACGATACATCTCAAGCGTTGTTCACGTGGAAAACGCTGCTTATATGAAGGTTCAACCCCACCCGGAGGATTTCCTAATTCATGGAATGGAGCAACCTACTGTACTTCAGAACTTGCGGTTATGAAGAACAATGAGATACACACCTGGGATCGGGGTTATGATGATGATGGAAATCAAGTTAGTTTTCTTCAACTCATTAACTTGATCAATTTGATGATTTATTTAACCTCACCTTCATAA

>MsG0380016933.01.T02

Protein sequence

>MsG0380016933.01.T01

MCTESESDSNSNGWNRAQGLALKALLLLGGALLVKRLRKSTTRWDHTRLVTQSLTGEKYSKDQASRDPDNYFNIRMLTCPAAELVDGSNVLYYEQAFWRSPQKPFRQRLLMTKPCPKELKCDVELSTYAIRDMEEYKNFCDRPKDQRPQPEEVIGDIGEHLTTIHLKRCSRGKRCLYEGSTPPGGFPNSWNGATYCTSELAVMKNNEIHTWDRGYDDDGNQVSFLQLINLINLMIYLTSPS*

>MsG0380016933.01.T02

MCTESESDSNSNGWNRAQGLALKALLLLGGALLVKRLRKSTTRWDHTRLVTQSLTGEKYSKDQASRDPDNYFNIRMLTCPAAELVDGSNVLYYEQVSTTVQFCISSF*