AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018840.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018840.01.T01 MTR_4g019060 92.949 312 15 2 1 312 1 305 0.0 559
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018840.01.T01 AT3G09210 53.746 307 126 6 14 315 18 313 8.59e-98 292

Find 70 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCGATTCTAACTCTTTAT+TGG 0.164470 4:-10470745 None:intergenic
AAGGAGGAAGCTCACCATTT+TGG 0.257911 4:-10470955 None:intergenic
TCCGATTCTAACTCTTTATT+GGG 0.274238 4:-10470744 None:intergenic
TGTGACTGTTAGTTGGTTAG+AGG 0.282285 4:-10470817 None:intergenic
GAAGGTGTTGGTGGCTTTAT+TGG 0.283047 4:+10469102 MsG0480018840.01.T01:CDS
GCAGAACCTGTGACAAGTTT+AGG 0.296638 4:-10470867 None:intergenic
TGAAGCTCTTGCTCGTTCTT+TGG 0.300864 4:+10467641 MsG0480018840.01.T01:CDS
TCTGCCGTTCGAATTATATC+TGG 0.315451 4:+10470885 MsG0480018840.01.T01:CDS
TGTTCGTGTTTCTCGTGTTA+AGG 0.330776 4:+10467605 MsG0480018840.01.T01:CDS
GGGGTTTGGTGGAGAGAGAG+GGG 0.345848 4:-10467359 None:intergenic
GCCAGTAGCTGAGGATGATA+TGG 0.369363 4:+10470623 MsG0480018840.01.T01:CDS
TCATCCTCAGCTACTGGCCT+TGG 0.387686 4:-10470618 None:intergenic
GCTGAACCGCAAAACCAAAA+TGG 0.394876 4:+10470941 MsG0480018840.01.T01:CDS
CTTGATAATCTCATGAAGTT+AGG 0.396459 4:+10467567 MsG0480018840.01.T01:CDS
GATTGGTATGCTTGGAACTT+TGG 0.399952 4:+10467258 MsG0480018840.01.T01:five_prime_UTR
GTTCGTGTTTCTCGTGTTAA+GGG 0.401772 4:+10467606 MsG0480018840.01.T01:CDS
GAGAGAGCAACGCAACAAAC+TGG 0.402702 4:+10467472 MsG0480018840.01.T01:CDS
GGAGGTGGAGGTGACGGAGG+TGG 0.403354 4:-10467397 None:intergenic
AAAATCAAAACCTCTGTTCC+CGG 0.404481 4:+10469020 MsG0480018840.01.T01:CDS
GATAGAAGTAGAAGATGAAA+GGG 0.426555 4:+10467292 MsG0480018840.01.T01:exon
GGGTTTGGTGGAGAGAGAGG+GGG 0.431000 4:-10467358 None:intergenic
TGCTTACGTATTTCCAACCT+TGG 0.434057 4:-10469127 None:intergenic
CTTCTTCTGTGACTGTTAGT+TGG 0.434285 4:-10470824 None:intergenic
CAAACCTTAAAGTCGATATC+AGG 0.436160 4:-10467675 None:intergenic
AGACAATTAATAATAGAGAT+TGG 0.442473 4:+10467241 None:intergenic
GGGGTGTAGAAGCGTGGTGG+TGG 0.443964 4:-10467339 None:intergenic
GAGGATTTCCGGGGAGGAGG+TGG 0.449141 4:-10467412 None:intergenic
GGTGGAGGTGACGGAGGTGG+CGG 0.456125 4:-10467394 None:intergenic
ATAATAGAGATTGGTATGCT+TGG 0.459071 4:+10467250 None:intergenic
TATGGAAGCAATCTTCAAAC+AGG 0.463026 4:+10470641 MsG0480018840.01.T01:CDS
TCCATATCATCCTCAGCTAC+TGG 0.464176 4:-10470624 None:intergenic
AGATAGAAGTAGAAGATGAA+AGG 0.469203 4:+10467291 MsG0480018840.01.T01:exon
GGAGGAGGTGGAGGTGACGG+AGG 0.472236 4:-10467400 None:intergenic
GATTTCCGGGGAGGAGGTGG+AGG 0.474329 4:-10467409 None:intergenic
CGGGGAGGAGGTGGAGGTGA+CGG 0.476647 4:-10467403 None:intergenic
GGCTTTATTGGATCCAAGGT+TGG 0.482109 4:+10469114 MsG0480018840.01.T01:CDS
AGAAAGGCTGTCGTAAACTC+TGG 0.484840 4:+10470717 MsG0480018840.01.T01:CDS
AGTGAGGATTTCCGGGGAGG+AGG 0.491526 4:-10467415 None:intergenic
GGATGCTAACGCTTCACCTA+TGG 0.494851 4:+10467313 MsG0480018840.01.T01:CDS
CTAACTTCATGAGATTATCA+AGG 0.505513 4:-10467566 None:intergenic
TGGTGGCTTTATTGGATCCA+AGG 0.512573 4:+10469110 MsG0480018840.01.T01:CDS
TCCCAATAAAGAGTTAGAAT+CGG 0.520203 4:+10470743 MsG0480018840.01.T01:CDS
AAATCAAAACCTCTGTTCCC+GGG 0.538102 4:+10469021 MsG0480018840.01.T01:CDS
ATTTCAATTAATTCTAGTGA+AGG 0.539152 4:-10470974 None:intergenic
TGAAGTTAGGTCCTCAATGG+TGG 0.544907 4:+10467580 MsG0480018840.01.T01:CDS
AAAAGAGAATAAATCATGGA+TGG 0.549712 4:+10467533 MsG0480018840.01.T01:CDS
CGTCACCTCCACCTCCTCCC+CGG 0.550330 4:+10467404 MsG0480018840.01.T01:CDS
TCAATTAATTCTAGTGAAGG+AGG 0.553336 4:-10470971 None:intergenic
AAAGAGTACGAAGGTGTTGG+TGG 0.557324 4:+10469093 MsG0480018840.01.T01:CDS
TCATGAAGTTAGGTCCTCAA+TGG 0.559956 4:+10467577 MsG0480018840.01.T01:CDS
TGCAGTGAGGATTTCCGGGG+AGG 0.561800 4:-10467418 None:intergenic
TTGTCGATTCAAAGCCCAAA+AGG 0.562583 4:+10470781 MsG0480018840.01.T01:CDS
GAAAGGCTGTCGTAAACTCT+GGG 0.569575 4:+10470718 MsG0480018840.01.T01:CDS
GAGGTGGCGGAGATTGAGAG+AGG 0.572402 4:-10467381 None:intergenic
AGCAATCTTCAAACAGGCAA+AGG 0.575995 4:+10470647 MsG0480018840.01.T01:CDS
ATAAAAGAGTACGAAGGTGT+TGG 0.595752 4:+10469090 MsG0480018840.01.T01:CDS
TGATCCAGATATAATTCGAA+CGG 0.597126 4:-10470889 None:intergenic
TAAACCAAGGCCAGTAGCTG+AGG 0.602508 4:+10470614 MsG0480018840.01.T01:CDS
AATCTTCAAACAGGCAAAGG+TGG 0.603658 4:+10470650 MsG0480018840.01.T01:CDS
AGGTGGCGGAGATTGAGAGA+GGG 0.608725 4:-10467380 None:intergenic
GAAGTTAGGTCCTCAATGGT+GGG 0.620845 4:+10467581 MsG0480018840.01.T01:CDS
GTGGCGGAGATTGAGAGAGG+GGG 0.622580 4:-10467378 None:intergenic
GAGCAACGCAACAAACTGGA+AGG 0.623859 4:+10467476 MsG0480018840.01.T01:CDS
AAAATACAACCCGGGAACAG+AGG 0.632675 4:-10469030 None:intergenic
GGTGGCGGAGATTGAGAGAG+GGG 0.634140 4:-10467379 None:intergenic
AAAGGCAGATTAATAAACCA+AGG 0.636259 4:+10470601 MsG0480018840.01.T01:CDS
TCCTCACTGCAAAAGAACGC+AGG 0.637208 4:+10467430 MsG0480018840.01.T01:CDS
AGCGTGGTGGTGGATTCCAT+AGG 0.665297 4:-10467329 None:intergenic
ACACGAACAACCCACCATTG+AGG 0.668787 4:-10467591 None:intergenic
GACTACATAAAAGAGTACGA+AGG 0.746036 4:+10469084 MsG0480018840.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATAAAGTCTTATAAAATA+AGG - Chr4:10470440-10470459 None:intergenic 10.0%
!!! TATTTTATAAGACTTTATAT+TGG + Chr4:10470440-10470459 MsG0480018840.01.T01:intron 10.0%
!! AAACAAGAAAAAAATGAATT+AGG + Chr4:10468106-10468125 MsG0480018840.01.T01:intron 15.0%
!! ATGCTTGTAATTATTAATTT+CGG + Chr4:10470487-10470506 MsG0480018840.01.T01:intron 15.0%
!!! TAAAAGTGACATATTTTTAT+TGG + Chr4:10470181-10470200 MsG0480018840.01.T01:intron 15.0%
!!! TATTTTGAGTTTAAATACTT+CGG - Chr4:10468295-10468314 None:intergenic 15.0%
!!! TTTTAAACCAAAAAAAGATA+GGG - Chr4:10468801-10468820 None:intergenic 15.0%
!! AAAAAGATTTCAGAGAAAAT+AGG - Chr4:10469622-10469641 None:intergenic 20.0%
!! AAAAGATTTCAGAGAAAATA+GGG - Chr4:10469621-10469640 None:intergenic 20.0%
!! AAAGTATACGTTATATTGAA+CGG + Chr4:10470325-10470344 MsG0480018840.01.T01:intron 20.0%
!! AACAATTAAGAAATGTTGTT+TGG + Chr4:10468903-10468922 MsG0480018840.01.T01:intron 20.0%
!! AAGATAAATATTCAACTTCT+CGG - Chr4:10469684-10469703 None:intergenic 20.0%
!! AATATAATCGCTTGAATAAT+AGG + Chr4:10468311-10468330 MsG0480018840.01.T01:intron 20.0%
!! ACTTCTTATTATGAATGAAT+AGG - Chr4:10469515-10469534 None:intergenic 20.0%
!! ATATCAAATGACAAAAGAAA+AGG - Chr4:10470077-10470096 None:intergenic 20.0%
!! GTTGAATATTTATCTTTGAT+TGG + Chr4:10469688-10469707 MsG0480018840.01.T01:intron 20.0%
!! TATCAAATGACAAAAGAAAA+GGG - Chr4:10470076-10470095 None:intergenic 20.0%
!! TTATAAGACTTTATATTGGA+TGG + Chr4:10470444-10470463 MsG0480018840.01.T01:intron 20.0%
!!! ATTATATCTGGATCATTTTT+AGG + Chr4:10470897-10470916 MsG0480018840.01.T01:CDS 20.0%
!!! CATTTTAAAGTTCAAATTGA+CGG - Chr4:10468453-10468472 None:intergenic 20.0%
!!! GATTGAAAATTTTCAATTCT+AGG + Chr4:10468574-10468593 MsG0480018840.01.T01:intron 20.0%
!!! GTTTTAAACCAAAAAAAGAT+AGG - Chr4:10468802-10468821 None:intergenic 20.0%
!!! TATTTTACCCTATCTTTTTT+TGG + Chr4:10468791-10468810 MsG0480018840.01.T01:intron 20.0%
!!! TTATATCTGGATCATTTTTA+GGG + Chr4:10470898-10470917 MsG0480018840.01.T01:CDS 20.0%
!!! TTGAATCTTGAATTATTTTG+AGG + Chr4:10470102-10470121 MsG0480018840.01.T01:intron 20.0%
!!! TTTAATGCATTGCTAATTTT+TGG + Chr4:10469163-10469182 MsG0480018840.01.T01:intron 20.0%
!!! TTTGTGTTTTTGTGTTTTTA+AGG + Chr4:10467694-10467713 MsG0480018840.01.T01:intron 20.0%
!!! TTTTCTCTGAAATCTTTTTA+TGG + Chr4:10469623-10469642 MsG0480018840.01.T01:intron 20.0%
!!! TTTTTACGATATACTTCATA+TGG + Chr4:10469843-10469862 MsG0480018840.01.T01:intron 20.0%
! AAAAGAGAATAAATCATGGA+TGG + Chr4:10467533-10467552 MsG0480018840.01.T01:CDS 25.0%
! ATACAAAGTTGACAAAATAG+TGG - Chr4:10470046-10470065 None:intergenic 25.0%
! ATCAAATGACAAAAGAAAAG+GGG - Chr4:10470075-10470094 None:intergenic 25.0%
! ATCTCTTGTATGTATCTATT+TGG + Chr4:10469935-10469954 MsG0480018840.01.T01:intron 25.0%
! CAAATGATAAAACAATTGAG+AGG - Chr4:10470576-10470595 None:intergenic 25.0%
! CAAGTTCTCAAATCAAATAA+TGG - Chr4:10469547-10469566 None:intergenic 25.0%
! CCAAAAAAGAGAATAAATCA+TGG + Chr4:10467529-10467548 MsG0480018840.01.T01:CDS 25.0%
! CTTTATAGAAGTAGATCATT+CGG - Chr4:10470309-10470328 None:intergenic 25.0%
! GTTATGGATAAGAATAGAAA+TGG + Chr4:10467768-10467787 MsG0480018840.01.T01:intron 25.0%
! TAATCTATCAGATAAACCAA+GGG - Chr4:10469804-10469823 None:intergenic 25.0%
! TTAATCTATCAGATAAACCA+AGG - Chr4:10469805-10469824 None:intergenic 25.0%
! TTGCTTGATCATTAATTTCA+TGG + Chr4:10468632-10468651 MsG0480018840.01.T01:intron 25.0%
!! CGTCAATTTGAACTTTAAAA+TGG + Chr4:10468451-10468470 MsG0480018840.01.T01:intron 25.0%
!! GTTTTATCATTTGCAGAAAA+AGG + Chr4:10470583-10470602 MsG0480018840.01.T01:intron 25.0%
!! TAGTCTTAAATTAGTTCAGA+TGG + Chr4:10468543-10468562 MsG0480018840.01.T01:intron 25.0%
!! TAGTTTATGTCTTTGTTTGA+AGG + Chr4:10468001-10468020 MsG0480018840.01.T01:intron 25.0%
!! TCGAAATGATTTGTCTTTAA+CGG + Chr4:10467926-10467945 MsG0480018840.01.T01:intron 25.0%
!! TCTTTTATGTAGTCATGTAA+TGG - Chr4:10469078-10469097 None:intergenic 25.0%
!! TTCGATCATATTGATCATTT+TGG + Chr4:10468509-10468528 MsG0480018840.01.T01:intron 25.0%
!!! AAATCTTTTTATGGATTGGT+TGG + Chr4:10469632-10469651 MsG0480018840.01.T01:intron 25.0%
!!! AATCTTTTTATGGATTGGTT+GGG + Chr4:10469633-10469652 MsG0480018840.01.T01:intron 25.0%
!!! ACAATTCATTGTTTTGTTAG+AGG - Chr4:10469261-10469280 None:intergenic 25.0%
!!! CCATGATTTATTCTCTTTTT+TGG - Chr4:10467532-10467551 None:intergenic 25.0%
!!! TATTGGATGGTGTTTTTTTT+TGG + Chr4:10470457-10470476 MsG0480018840.01.T01:intron 25.0%
!!! TCTGAAATCTTTTTATGGAT+TGG + Chr4:10469628-10469647 MsG0480018840.01.T01:intron 25.0%
!!! TTGTGTTGTTCATTTTGTTA+TGG + Chr4:10467752-10467771 MsG0480018840.01.T01:intron 25.0%
AAAAAACCTAAACTTGTCAC+AGG + Chr4:10470861-10470880 MsG0480018840.01.T01:CDS 30.0%
AAAGGCAGATTAATAAACCA+AGG + Chr4:10470601-10470620 MsG0480018840.01.T01:CDS 30.0%
ACACAACTTCAAATATGTTG+CGG - Chr4:10469300-10469319 None:intergenic 30.0%
ACATTGAGACATTAGACAAA+AGG - Chr4:10470524-10470543 None:intergenic 30.0%
ACTATTTGAGCTCAAATACT+TGG + Chr4:10467958-10467977 MsG0480018840.01.T01:intron 30.0%
AGATAGAAGTAGAAGATGAA+AGG + Chr4:10467291-10467310 MsG0480018840.01.T01:exon 30.0%
AGTTGAATGTGAATCATTGT+TGG + Chr4:10468163-10468182 MsG0480018840.01.T01:intron 30.0%
ATCCGATTCTAACTCTTTAT+TGG - Chr4:10470748-10470767 None:intergenic 30.0%
ATTATTATCAGTGTTTGCGT+AGG - Chr4:10469360-10469379 None:intergenic 30.0%
CGATTCACGATTCAAAAAAT+AGG + Chr4:10470233-10470252 MsG0480018840.01.T01:intron 30.0%
CTAACTTCATGAGATTATCA+AGG - Chr4:10467569-10467588 None:intergenic 30.0%
GAGTTGAATGTGAATCATTT+AGG + Chr4:10468134-10468153 MsG0480018840.01.T01:intron 30.0%
GATAGAAGTAGAAGATGAAA+GGG + Chr4:10467292-10467311 MsG0480018840.01.T01:exon 30.0%
GCTTGAATAATAGGCATAAT+TGG + Chr4:10468320-10468339 MsG0480018840.01.T01:intron 30.0%
GTTGAATGTGAATCATTGTT+GGG + Chr4:10468164-10468183 MsG0480018840.01.T01:intron 30.0%
GTTGTTTATTTATTGATCCG+TGG + Chr4:10468925-10468944 MsG0480018840.01.T01:intron 30.0%
TCCCAATAAAGAGTTAGAAT+CGG + Chr4:10470743-10470762 MsG0480018840.01.T01:CDS 30.0%
TCCGATTCTAACTCTTTATT+GGG - Chr4:10470747-10470766 None:intergenic 30.0%
TGATCCAGATATAATTCGAA+CGG - Chr4:10470892-10470911 None:intergenic 30.0%
TGATTATAGTTCATACTGAG+TGG + Chr4:10470359-10470378 MsG0480018840.01.T01:intron 30.0%
TGGGTATAACTCATAGTTTA+CGG + Chr4:10468188-10468207 MsG0480018840.01.T01:intron 30.0%
TTAAACTGAATCCAATCGAT+AGG + Chr4:10469911-10469930 MsG0480018840.01.T01:intron 30.0%
TTGAATGTGAATCATTTAGG+AGG + Chr4:10468137-10468156 MsG0480018840.01.T01:intron 30.0%
! ACATATTTGAAGTTGTGTCT+AGG + Chr4:10469302-10469321 MsG0480018840.01.T01:intron 30.0%
! CTTGATAATCTCATGAAGTT+AGG + Chr4:10467567-10467586 MsG0480018840.01.T01:CDS 30.0%
! GGCTAATGATTATTCTAGTT+AGG + Chr4:10467887-10467906 MsG0480018840.01.T01:intron 30.0%
! TATCTGTTTTCTTTTGAACC+AGG + Chr4:10468390-10468409 MsG0480018840.01.T01:intron 30.0%
! TCATTAATTTCATGGACTGA+AGG + Chr4:10468640-10468659 MsG0480018840.01.T01:intron 30.0%
! TCTTCAATCTCTTTTTCTCA+TGG - Chr4:10468984-10469003 None:intergenic 30.0%
! TTCTAGTTAGGAATAGAACT+TGG + Chr4:10467899-10467918 MsG0480018840.01.T01:intron 30.0%
!! TGATTCAAGTTTTGTCTTCT+AGG + Chr4:10469586-10469605 MsG0480018840.01.T01:intron 30.0%
!!! AGGTTTTGATTTTACAGAGA+TGG - Chr4:10469013-10469032 None:intergenic 30.0%
!!! GTAGTTTTTTCTTAACCATC+CGG + Chr4:10467806-10467825 MsG0480018840.01.T01:intron 30.0%
!!! TTTTCCTGATATCGACTTTA+AGG + Chr4:10467671-10467690 MsG0480018840.01.T01:CDS 30.0%
AAAATCAAAACCTCTGTTCC+CGG + Chr4:10469020-10469039 MsG0480018840.01.T01:CDS 35.0%
AAATCAGACAAAGAATGCAC+AGG - Chr4:10468365-10468384 None:intergenic 35.0%
AAGGAGACTTTGGATTTATG+TGG + Chr4:10468020-10468039 MsG0480018840.01.T01:intron 35.0%
AATGACAAAAGAAAAGGGGT+TGG - Chr4:10470071-10470090 None:intergenic 35.0%
AATGTGAATCATTGTTGGGT+TGG + Chr4:10468168-10468187 MsG0480018840.01.T01:intron 35.0%
ACAATTGAGAGGTTCAACTT+AGG - Chr4:10470565-10470584 None:intergenic 35.0%
ACACCTTTAATCGTAAGTGT+TGG + Chr4:10469454-10469473 MsG0480018840.01.T01:intron 35.0%
ACATCAAATAGAGACACGAT+TGG - Chr4:10469892-10469911 None:intergenic 35.0%
ACTCATAGTTTACGGATAAG+TGG + Chr4:10468196-10468215 MsG0480018840.01.T01:intron 35.0%
AGAAGAAGAAGAAGAGAGAA+AGG + Chr4:10470701-10470720 MsG0480018840.01.T01:CDS 35.0%
AGACTTTGGATTTATGTGGA+TGG + Chr4:10468024-10468043 MsG0480018840.01.T01:intron 35.0%
AGGATTCATCATAGTGAATC+AGG - Chr4:10469981-10470000 None:intergenic 35.0%
ATAAACCAAGGGAAACAAGA+AGG - Chr4:10469793-10469812 None:intergenic 35.0%
ATCTCAGAAAAATACAACCC+GGG - Chr4:10469041-10469060 None:intergenic 35.0%
ATGTGAATCATTGTTGGGTT+GGG + Chr4:10468169-10468188 MsG0480018840.01.T01:intron 35.0%
CAAACCTTAAAGTCGATATC+AGG - Chr4:10467678-10467697 None:intergenic 35.0%
CAAGCTCCAATCAATATGTT+TGG - Chr4:10468832-10468851 None:intergenic 35.0%
CATCTCAGAAAAATACAACC+CGG - Chr4:10469042-10469061 None:intergenic 35.0%
CCTAAAACCAAACATTACCA+CGG - Chr4:10468945-10468964 None:intergenic 35.0%
CTCCAATCAATATGTTTGGA+TGG - Chr4:10468828-10468847 None:intergenic 35.0%
CTCCATCCAAACATATTGAT+TGG + Chr4:10468823-10468842 MsG0480018840.01.T01:intron 35.0%
GAATAATAGGCATAATTGGC+CGG + Chr4:10468324-10468343 MsG0480018840.01.T01:intron 35.0%
GAGAAAAAGAGATTGAAGAG+TGG + Chr4:10468985-10469004 MsG0480018840.01.T01:CDS 35.0%
GGAAAAAAGTCTTGGGAATA+CGG + Chr4:10467837-10467856 MsG0480018840.01.T01:intron 35.0%
GTGATTCGATTGAATGAATC+AGG - Chr4:10470001-10470020 None:intergenic 35.0%
TACAAGAGATTCCTATCGAT+TGG - Chr4:10469925-10469944 None:intergenic 35.0%
TATGGAAGCAATCTTCAAAC+AGG + Chr4:10470641-10470660 MsG0480018840.01.T01:CDS 35.0%
TTTGGATTTATGTGGATGGA+GGG + Chr4:10468028-10468047 MsG0480018840.01.T01:intron 35.0%
! ATAAAAGAGTACGAAGGTGT+TGG + Chr4:10469090-10469109 MsG0480018840.01.T01:CDS 35.0%
! CTCGGTTTATGTATTTTGCT+TGG - Chr4:10469666-10469685 None:intergenic 35.0%
! GACTACATAAAAGAGTACGA+AGG + Chr4:10469084-10469103 MsG0480018840.01.T01:CDS 35.0%
! TATTGATCCGTGGTAATGTT+TGG + Chr4:10468935-10468954 MsG0480018840.01.T01:intron 35.0%
! TATTTGAAGTTGTGTCTAGG+AGG + Chr4:10469305-10469324 MsG0480018840.01.T01:intron 35.0%
! TCATTCGGTACAAAGTATCA+TGG - Chr4:10470294-10470313 None:intergenic 35.0%
! TCTTTGTTTGAAGGAGACTT+TGG + Chr4:10468010-10468029 MsG0480018840.01.T01:intron 35.0%
!!! AGGTTGCTGTTTTTGCTTTA+TGG + Chr4:10467714-10467733 MsG0480018840.01.T01:intron 35.0%
!!! GTTTTTCTAGAGCTCCTTTT+GGG - Chr4:10470798-10470817 None:intergenic 35.0%
AAATCAAAACCTCTGTTCCC+GGG + Chr4:10469021-10469040 MsG0480018840.01.T01:CDS 40.0%
AACTGTTAGAACATACAGCC+TGG - Chr4:10468411-10468430 None:intergenic 40.0%
AATCTTCAAACAGGCAAAGG+TGG + Chr4:10470650-10470669 MsG0480018840.01.T01:CDS 40.0%
AGCAATCTTCAAACAGGCAA+AGG + Chr4:10470647-10470666 MsG0480018840.01.T01:CDS 40.0%
AGGTTCAACTTAGGCTTAAC+AGG - Chr4:10470556-10470575 None:intergenic 40.0%
AGTGAATCAGGATTCGAGAT+GGG - Chr4:10469969-10469988 None:intergenic 40.0%
CAGGATTTCATCACAGAATC+CGG - Chr4:10468346-10468365 None:intergenic 40.0%
CTATAACCCTGCAACATCTA+GGG - Chr4:10468736-10468755 None:intergenic 40.0%
CTTCTTCTGTGACTGTTAGT+TGG - Chr4:10470827-10470846 None:intergenic 40.0%
CTTTGGATTTATGTGGATGG+AGG + Chr4:10468027-10468046 MsG0480018840.01.T01:intron 40.0%
GAAAATGAACCGTCACAGTT+TGG - Chr4:10468714-10468733 None:intergenic 40.0%
GATTGGTATGCTTGGAACTT+TGG + Chr4:10467258-10467277 MsG0480018840.01.T01:five_prime_UTR 40.0%
GCACCAACACTTACGATTAA+AGG - Chr4:10469460-10469479 None:intergenic 40.0%
GTCGGAAGTTAAGTAAAGTC+TGG + Chr4:10467866-10467885 MsG0480018840.01.T01:intron 40.0%
GTTAGAGGACTTGATGAACA+TGG - Chr4:10469246-10469265 None:intergenic 40.0%
GTTCGTGTTTCTCGTGTTAA+GGG + Chr4:10467606-10467625 MsG0480018840.01.T01:CDS 40.0%
TAGTGAATCAGGATTCGAGA+TGG - Chr4:10469970-10469989 None:intergenic 40.0%
TCATGAAGTTAGGTCCTCAA+TGG + Chr4:10467577-10467596 MsG0480018840.01.T01:CDS 40.0%
TCTATAACCCTGCAACATCT+AGG - Chr4:10468737-10468756 None:intergenic 40.0%
TCTGAGGGGAAAAAAGTCTT+GGG + Chr4:10467830-10467849 MsG0480018840.01.T01:intron 40.0%
TCTGCCGTTCGAATTATATC+TGG + Chr4:10470885-10470904 MsG0480018840.01.T01:CDS 40.0%
TGCTTACGTATTTCCAACCT+TGG - Chr4:10469130-10469149 None:intergenic 40.0%
TGGCTGACTACACTAAGTTT+AGG - Chr4:10470026-10470045 None:intergenic 40.0%
TGTCTGACTCTGACATGTAT+CGG + Chr4:10469422-10469441 MsG0480018840.01.T01:intron 40.0%
TGTGACTGTTAGTTGGTTAG+AGG - Chr4:10470820-10470839 None:intergenic 40.0%
TGTTCGTGTTTCTCGTGTTA+AGG + Chr4:10467605-10467624 MsG0480018840.01.T01:CDS 40.0%
! CATTTTCCCTAGATGTTGCA+GGG + Chr4:10468727-10468746 MsG0480018840.01.T01:intron 40.0%
! CTCTTTTTCTCATGGATAGC+TGG - Chr4:10468976-10468995 None:intergenic 40.0%
! TCAAATTGACGGATGCGTAA+AGG - Chr4:10468442-10468461 None:intergenic 40.0%
! TCATTTTCCCTAGATGTTGC+AGG + Chr4:10468726-10468745 MsG0480018840.01.T01:intron 40.0%
! TCTTTTGCAGTGAGGATTTC+CGG - Chr4:10467426-10467445 None:intergenic 40.0%
! TTCTGAGGGGAAAAAAGTCT+TGG + Chr4:10467829-10467848 MsG0480018840.01.T01:intron 40.0%
! TTGGGAATACGGTGTTTTGT+CGG + Chr4:10467848-10467867 MsG0480018840.01.T01:intron 40.0%
!! GTTTTCCTTCTTGTTTCCCT+TGG + Chr4:10469785-10469804 MsG0480018840.01.T01:intron 40.0%
!! TCGTAAGTGTTGGTGCTATA+TGG + Chr4:10469464-10469483 MsG0480018840.01.T01:intron 40.0%
!! TTGTCGATTCAAAGCCCAAA+AGG + Chr4:10470781-10470800 MsG0480018840.01.T01:CDS 40.0%
!!! AGCTCACCATTTTGGTTTTG+CGG - Chr4:10470950-10470969 None:intergenic 40.0%
!!! CCGTGGTAATGTTTGGTTTT+AGG + Chr4:10468942-10468961 MsG0480018840.01.T01:intron 40.0%
!!! GGATCATTTTTAGGGTTTGC+AGG + Chr4:10470906-10470925 MsG0480018840.01.T01:CDS 40.0%
!!! GGTTTTTCTAGAGCTCCTTT+TGG - Chr4:10470799-10470818 None:intergenic 40.0%
AAAATACAACCCGGGAACAG+AGG - Chr4:10469033-10469052 None:intergenic 45.0%
AACTCCAGACCAAACTGTGA+CGG + Chr4:10468702-10468721 MsG0480018840.01.T01:intron 45.0%
AAGTGGCCATGTCGCTAATT+GGG + Chr4:10468213-10468232 MsG0480018840.01.T01:intron 45.0%
AGAAAGGCTGTCGTAAACTC+TGG + Chr4:10470717-10470736 MsG0480018840.01.T01:CDS 45.0%
ATTACCCTTGAGCCATACTG+CGG - Chr4:10468259-10468278 None:intergenic 45.0%
GAAAGGCTGTCGTAAACTCT+GGG + Chr4:10470718-10470737 MsG0480018840.01.T01:CDS 45.0%
GAAGTTAGGTCCTCAATGGT+GGG + Chr4:10467581-10467600 MsG0480018840.01.T01:CDS 45.0%
GCAGAACCTGTGACAAGTTT+AGG - Chr4:10470870-10470889 None:intergenic 45.0%
GCTGAACCGCAAAACCAAAA+TGG + Chr4:10470941-10470960 MsG0480018840.01.T01:CDS 45.0%
TAAGTGGCCATGTCGCTAAT+TGG + Chr4:10468212-10468231 MsG0480018840.01.T01:intron 45.0%
TACATGTCAGAGTCAGACAC+CGG - Chr4:10469421-10469440 None:intergenic 45.0%
TCCATATCATCCTCAGCTAC+TGG - Chr4:10470627-10470646 None:intergenic 45.0%
TCTTATCTCCTCAGCTGGTA+GGG - Chr4:10468865-10468884 None:intergenic 45.0%
TGAAGCTCTTGCTCGTTCTT+TGG + Chr4:10467641-10467660 MsG0480018840.01.T01:CDS 45.0%
TGAAGTTAGGTCCTCAATGG+TGG + Chr4:10467580-10467599 MsG0480018840.01.T01:CDS 45.0%
TTCTTAACCATCCGGTTCTG+AGG + Chr4:10467814-10467833 MsG0480018840.01.T01:intron 45.0%
TTCTTATCTCCTCAGCTGGT+AGG - Chr4:10468866-10468885 None:intergenic 45.0%
TTTATGTGGATGGAGGGCTT+TGG + Chr4:10468034-10468053 MsG0480018840.01.T01:intron 45.0%
! AAGGAGGAAGCTCACCATTT+TGG - Chr4:10470958-10470977 None:intergenic 45.0%
! CTTTTGCAGTGAGGATTTCC+GGG - Chr4:10467425-10467444 None:intergenic 45.0%
! TACATGTGTAAGTGTCGTGC+CGG + Chr4:10469399-10469418 MsG0480018840.01.T01:intron 45.0%
! TCTTAACCATCCGGTTCTGA+GGG + Chr4:10467815-10467834 MsG0480018840.01.T01:intron 45.0%
! TTTTGCAGTGAGGATTTCCG+GGG - Chr4:10467424-10467443 None:intergenic 45.0%
!! AAAGAGTACGAAGGTGTTGG+TGG + Chr4:10469093-10469112 MsG0480018840.01.T01:CDS 45.0%
!! AAGTGTTGGTGCTATATGGC+TGG + Chr4:10469468-10469487 MsG0480018840.01.T01:intron 45.0%
!! GAAGGTGTTGGTGGCTTTAT+TGG + Chr4:10469102-10469121 MsG0480018840.01.T01:CDS 45.0%
!! GGCTTTATTGGATCCAAGGT+TGG + Chr4:10469114-10469133 MsG0480018840.01.T01:CDS 45.0%
!! TGGTGGCTTTATTGGATCCA+AGG + Chr4:10469110-10469129 MsG0480018840.01.T01:CDS 45.0%
!!! GACTTTTTTCCCCTCAGAAC+CGG - Chr4:10467828-10467847 None:intergenic 45.0%
ACACGAACAACCCACCATTG+AGG - Chr4:10467594-10467613 None:intergenic 50.0%
AGTGGCCATGTCGCTAATTG+GGG + Chr4:10468214-10468233 MsG0480018840.01.T01:intron 50.0%
CGCTTTCTTATCTCCTCAGC+TGG - Chr4:10468870-10468889 None:intergenic 50.0%
GAGAGAGCAACGCAACAAAC+TGG + Chr4:10467472-10467491 MsG0480018840.01.T01:CDS 50.0%
GAGCAACGCAACAAACTGGA+AGG + Chr4:10467476-10467495 MsG0480018840.01.T01:CDS 50.0%
GCCAGTAGCTGAGGATGATA+TGG + Chr4:10470623-10470642 MsG0480018840.01.T01:CDS 50.0%
GGATGCTAACGCTTCACCTA+TGG + Chr4:10467313-10467332 MsG0480018840.01.T01:CDS 50.0%
TAAACCAAGGCCAGTAGCTG+AGG + Chr4:10470614-10470633 MsG0480018840.01.T01:CDS 50.0%
TCCTCACTGCAAAAGAACGC+AGG + Chr4:10467430-10467449 MsG0480018840.01.T01:CDS 50.0%
TGAACCGTCACAGTTTGGTC+TGG - Chr4:10468709-10468728 None:intergenic 50.0%
! TTTTTCCCCTCAGAACCGGA+TGG - Chr4:10467824-10467843 None:intergenic 50.0%
!! CTTAACCATCCGGTTCTGAG+GGG + Chr4:10467816-10467835 MsG0480018840.01.T01:intron 50.0%
AGTGTCCGCAGTATGGCTCA+AGG + Chr4:10468251-10468270 MsG0480018840.01.T01:intron 55.0%
GATTGAGAGAGGGGGTTTGG+TGG - Chr4:10467373-10467392 None:intergenic 55.0%
GCTAACAACCCTACCAGCTG+AGG + Chr4:10468854-10468873 MsG0480018840.01.T01:intron 55.0%
GGAGATTGAGAGAGGGGGTT+TGG - Chr4:10467376-10467395 None:intergenic 55.0%
GGTGAGCTTCCTCCTTCACT+AGG + Chr4:10470962-10470981 MsG0480018840.01.T01:CDS 55.0%
GTGGCCATGTCGCTAATTGG+GGG + Chr4:10468215-10468234 MsG0480018840.01.T01:intron 55.0%
GTGTCCGCAGTATGGCTCAA+GGG + Chr4:10468252-10468271 MsG0480018840.01.T01:intron 55.0%
TGGCCATGTCGCTAATTGGG+GGG + Chr4:10468216-10468235 MsG0480018840.01.T01:intron 55.0%
! ATGTGGATGGAGGGCTTTGG+AGG + Chr4:10468037-10468056 MsG0480018840.01.T01:intron 55.0%
! GCCTGCGTTCTTTTGCAGTG+AGG - Chr4:10467434-10467453 None:intergenic 55.0%
! TCATCCTCAGCTACTGGCCT+TGG - Chr4:10470621-10470640 None:intergenic 55.0%
!! AGCGTGGTGGTGGATTCCAT+AGG - Chr4:10467332-10467351 None:intergenic 55.0%
!! AGGTGGCGGAGATTGAGAGA+GGG - Chr4:10467383-10467402 None:intergenic 55.0%
AGTGAGGATTTCCGGGGAGG+AGG - Chr4:10467418-10467437 None:intergenic 60.0%
GCTCCCCCCAATTAGCGACA+TGG - Chr4:10468222-10468241 None:intergenic 60.0%
TCGCTAATTGGGGGGAGCGA+GGG + Chr4:10468224-10468243 MsG0480018840.01.T01:intron 60.0%
TGCAGTGAGGATTTCCGGGG+AGG - Chr4:10467421-10467440 None:intergenic 60.0%
! AGAGAGGGGGTGTAGAAGCG+TGG - Chr4:10467348-10467367 None:intergenic 60.0%
! GTGGCGGAGATTGAGAGAGG+GGG - Chr4:10467381-10467400 None:intergenic 60.0%
!! AGGGGGTTTGGTGGAGAGAG+AGG - Chr4:10467364-10467383 None:intergenic 60.0%
!! ATGGAGGGCTTTGGAGGCAG+AGG + Chr4:10468043-10468062 MsG0480018840.01.T01:intron 60.0%
!! GAGGTGGCGGAGATTGAGAG+AGG - Chr4:10467384-10467403 None:intergenic 60.0%
!! GGGGGTTTGGTGGAGAGAGA+GGG - Chr4:10467363-10467382 None:intergenic 60.0%
!! GGGGTTTGGTGGAGAGAGAG+GGG - Chr4:10467362-10467381 None:intergenic 60.0%
!! GGGTTTGGTGGAGAGAGAGG+GGG - Chr4:10467361-10467380 None:intergenic 60.0%
!! GGTGGCGGAGATTGAGAGAG+GGG - Chr4:10467382-10467401 None:intergenic 60.0%
!! TGGAGGGCTTTGGAGGCAGA+GGG + Chr4:10468044-10468063 MsG0480018840.01.T01:intron 60.0%
CGCTAATTGGGGGGAGCGAG+GGG + Chr4:10468225-10468244 MsG0480018840.01.T01:intron 65.0%
CTAATTGGGGGGAGCGAGGG+GGG + Chr4:10468227-10468246 MsG0480018840.01.T01:intron 65.0%
GAGGATTTCCGGGGAGGAGG+TGG - Chr4:10467415-10467434 None:intergenic 65.0%
GATTTCCGGGGAGGAGGTGG+AGG - Chr4:10467412-10467431 None:intergenic 65.0%
GCTAATTGGGGGGAGCGAGG+GGG + Chr4:10468226-10468245 MsG0480018840.01.T01:intron 65.0%
GTCGCTAATTGGGGGGAGCG+AGG + Chr4:10468223-10468242 MsG0480018840.01.T01:intron 65.0%
! GAGGGGGTGTAGAAGCGTGG+TGG - Chr4:10467345-10467364 None:intergenic 65.0%
! GGGGTGTAGAAGCGTGGTGG+TGG - Chr4:10467342-10467361 None:intergenic 65.0%
!! GGGGGGAAGTGTCCGCAGTA+TGG + Chr4:10468244-10468263 MsG0480018840.01.T01:intron 65.0%
CGGGGAGGAGGTGGAGGTGA+CGG - Chr4:10467406-10467425 None:intergenic 70.0%
CGTCACCTCCACCTCCTCCC+CGG + Chr4:10467404-10467423 MsG0480018840.01.T01:CDS 70.0%
! GGAGGAGGTGGAGGTGACGG+AGG - Chr4:10467403-10467422 None:intergenic 70.0%
!! GGAGGTGGAGGTGACGGAGG+TGG - Chr4:10467400-10467419 None:intergenic 70.0%
!! GGTGGAGGTGACGGAGGTGG+CGG - Chr4:10467397-10467416 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 10467256 10470983 10467256 ID=MsG0480018840.01;Name=MsG0480018840.01
Chr4 mRNA 10467256 10470983 10467256 ID=MsG0480018840.01.T01;Parent=MsG0480018840.01;Name=MsG0480018840.01.T01;_AED=0.50;_eAED=0.50;_QI=50|1|0.66|1|1|1|3|0|316
Chr4 exon 10467256 10467692 10467256 ID=MsG0480018840.01.T01:exon:3020;Parent=MsG0480018840.01.T01
Chr4 exon 10468964 10469142 10468964 ID=MsG0480018840.01.T01:exon:3021;Parent=MsG0480018840.01.T01
Chr4 exon 10470599 10470983 10470599 ID=MsG0480018840.01.T01:exon:3022;Parent=MsG0480018840.01.T01
Chr4 five_prime_UTR 10467256 10467305 10467256 ID=MsG0480018840.01.T01:five_prime_utr;Parent=MsG0480018840.01.T01
Chr4 CDS 10467306 10467692 10467306 ID=MsG0480018840.01.T01:cds;Parent=MsG0480018840.01.T01
Chr4 CDS 10468964 10469142 10468964 ID=MsG0480018840.01.T01:cds;Parent=MsG0480018840.01.T01
Chr4 CDS 10470599 10470983 10470599 ID=MsG0480018840.01.T01:cds;Parent=MsG0480018840.01.T01
Gene Sequence

>MsG0480018840.01.T01

ATGAAAGGGATGCTAACGCTTCACCTATGGAATCCACCACCACGCTTCTACACCCCCTCTCTCTCCACCAAACCCCCTCTCTCAATCTCCGCCACCTCCGTCACCTCCACCTCCTCCCCGGAAATCCTCACTGCAAAAGAACGCAGGCGCTTACGCAACGAACGAAGAGAGAGCAACGCAACAAACTGGAAGGAAGAAGTTGAAAATAAACTCATTCAGAAAACCAAAAAAGAGAATAAATCATGGATGGATGAACTCAACCTTGATAATCTCATGAAGTTAGGTCCTCAATGGTGGGTTGTTCGTGTTTCTCGTGTTAAGGGTCAGTATACTGCTGAAGCTCTTGCTCGTTCTTTGGCTAAGTTTTTTCCTGATATCGACTTTAAGGTATATGCTCCAGCTATCCATGAGAAAAAGAGATTGAAGAGTGGTTCCATCTCTGTAAAATCAAAACCTCTGTTCCCGGGTTGTATTTTTCTGAGATGCGAACTGAACAAACCATTACATGACTACATAAAAGAGTACGAAGGTGTTGGTGGCTTTATTGGATCCAAGGTTGGAAATACAAAAAGGCAGATTAATAAACCAAGGCCAGTAGCTGAGGATGATATGGAAGCAATCTTCAAACAGGCAAAGGTGGAGCAAGAAAATGCTGACAAAGCATTTGAAGAAGAAGAAGAAGAGAGAAAGGCTGTCGTAAACTCTGGGAATCCCAATAAAGAGTTAGAATCGGATGTTTCGAAAGCTATTGTCGATTCAAAGCCCAAAAGGAGCTCTAGAAAAACCTCTAACCAACTAACAGTCACAGAAGAAGCTTCATCAGCTAAAAAAAAACCTAAACTTGTCACAGGTTCTGCCGTTCGAATTATATCTGGATCATTTTTAGGGTTTGCAGGCACTCTCAAGAAGCTGAACCGCAAAACCAAAATGGTGAGCTTCCTCCTTCACTAG

Protein sequence

>MsG0480018840.01.T01

MKGMLTLHLWNPPPRFYTPSLSTKPPLSISATSVTSTSSPEILTAKERRRLRNERRESNATNWKEEVENKLIQKTKKENKSWMDELNLDNLMKLGPQWWVVRVSRVKGQYTAEALARSLAKFFPDIDFKVYAPAIHEKKRLKSGSISVKSKPLFPGCIFLRCELNKPLHDYIKEYEGVGGFIGSKVGNTKRQINKPRPVAEDDMEAIFKQAKVEQENADKAFEEEEEERKAVVNSGNPNKELESDVSKAIVDSKPKRSSRKTSNQLTVTEEASSAKKKPKLVTGSAVRIISGSFLGFAGTLKKLNRKTKMVSFLLH*