AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021169.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021169.01.T01 MTR_4g068230 93.407 546 35 1 38 583 33 577 0.0 1034
MsG0480021169.01.T01 MTR_4g068240 86.154 520 72 0 57 576 74 593 0.0 917
MsG0480021169.01.T01 MTR_4g068270 85.769 520 74 0 57 576 8 527 0.0 916
MsG0480021169.01.T01 MTR_5g096240 71.622 74 21 0 327 400 1 74 1.40e-28 108
MsG0480021169.01.T01 MTR_4g117010 70.270 74 22 0 327 400 1 74 3.24e-26 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 152 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGTTTGTGCTTCTAATA+TGG 0.174686 4:-54623174 None:intergenic
GAGAGCATTGGTAAGGTTTC+GGG 0.190923 4:+54624516 MsG0480021169.01.T01:CDS
GTCCTTACAAATTGAATTTC+AGG 0.203917 4:+54621759 MsG0480021169.01.T01:CDS
CCAACATCAACCGCCATTTC+TGG 0.238173 4:-54624785 None:intergenic
CTTTGATGATCCAAACAATT+TGG 0.249297 4:-54623201 None:intergenic
TCCTCGAAATTGTCATTTAT+CGG 0.257328 4:+54623307 MsG0480021169.01.T01:CDS
TGCTTCTAATATGGGTCCTT+GGG 0.268218 4:-54623165 None:intergenic
GCTTGGTTGAATACAGTATC+AGG 0.268880 4:-54624081 None:intergenic
GACTTGTGGTTTGGAGAGTT+TGG 0.285707 4:-54624002 None:intergenic
TTCCTTCCAATTCGAGTTCC+TGG 0.285931 4:-54623696 None:intergenic
ACACAGCTGAAGAAATTCTT+AGG 0.291771 4:+54624740 MsG0480021169.01.T01:three_prime_UTR
TGGGAAGGTGAAAACCGTTT+TGG 0.293842 4:-54621645 None:intergenic
CTGTTAGATCAGCCCCTTGC+TGG 0.315011 4:-54623882 None:intergenic
TTGTCATTTATCGGCTATAT+CGG 0.328484 4:+54623316 MsG0480021169.01.T01:CDS
AAGTCCTAGTTACCTGCTTT+TGG 0.329378 4:+54624020 MsG0480021169.01.T01:CDS
TGGTGAACTGCTGCATTCAT+TGG 0.330055 4:-54622949 None:intergenic
ATCACTTATGCACTTAATCT+TGG 0.331813 4:+54624312 MsG0480021169.01.T01:CDS
TCTGTTTGTGCTTCTAATAT+GGG 0.332552 4:-54623173 None:intergenic
GAAATCTTATATCGGGATTT+CGG 0.334553 4:+54624258 MsG0480021169.01.T01:CDS
GTGCTTCTAATATGGGTCCT+TGG 0.338955 4:-54623166 None:intergenic
GGAGAGCATTGGTAAGGTTT+CGG 0.339213 4:+54624515 MsG0480021169.01.T01:CDS
TGGTGGTGTCACTCCATTAC+AGG 0.339936 4:+54623406 MsG0480021169.01.T01:CDS
GGTGAACTGCTGCATTCATT+GGG 0.340579 4:-54622948 None:intergenic
CAGAAGAGGTTGTCAAGTTC+AGG 0.367195 4:-54623140 None:intergenic
ACAGGTATACCTGGAGGATA+TGG 0.369128 4:-54624552 None:intergenic
TGGGATCCAGGCAGCAATAA+TGG 0.370354 4:+54623253 MsG0480021169.01.T01:CDS
ACAGAAGCAGCCAAATTGTT+TGG 0.373346 4:+54623191 MsG0480021169.01.T01:CDS
GTCCTGAAATTCAATTTGTA+AGG 0.380572 4:-54621761 None:intergenic
AAGAAATTCTCCTGGTGAAC+AGG 0.381246 4:-54623279 None:intergenic
TCAGTAAGTACTCCGTCTTT+AGG 0.381995 4:-54624411 None:intergenic
TGCTATCCAGGAACTCGAAT+TGG 0.387817 4:+54623690 MsG0480021169.01.T01:CDS
CACTTAATCTTGGAACTTGT+AGG 0.388613 4:+54624322 MsG0480021169.01.T01:CDS
GCAGGTATTGAGTGCTATCC+AGG 0.393137 4:+54623678 MsG0480021169.01.T01:intron
TAAAAGAAAAGTAACGATAA+AGG 0.393781 4:+54624494 MsG0480021169.01.T01:CDS
GTAGGAAAAGTGGAAGAAAA+TGG 0.398084 4:+54621563 MsG0480021169.01.T01:CDS
GGTAACTAGGACTTGTGGTT+TGG 0.402917 4:-54624011 None:intergenic
CTAGCTCAGCCCTCCAGCAA+GGG 0.409492 4:+54623869 MsG0480021169.01.T01:CDS
CCTTGCTGGAGGGCTGAGCT+AGG 0.410613 4:-54623868 None:intergenic
TTATTCCCGATAAAAGCCTT+TGG 0.411005 4:-54624353 None:intergenic
TTGTCGGAGGTACTACTTGT+GGG 0.411563 4:+54623234 MsG0480021169.01.T01:CDS
GCCTCGATGACTCGACTCAT+TGG 0.419230 4:+54623083 MsG0480021169.01.T01:CDS
GACAACTAAAGAAGAAAGTA+AGG 0.419635 4:-54624667 None:intergenic
CAGCACCTTCACTTCTTACA+TGG 0.424209 4:-54624623 None:intergenic
AAGCGGATGAAATCTTATAT+CGG 0.425695 4:+54624250 MsG0480021169.01.T01:CDS
AGCCGCAATGGATCAATTGC+AGG 0.428507 4:-54624189 None:intergenic
AATAACTGAATCACCTGTAA+TGG 0.429007 4:-54623419 None:intergenic
ATCACTTCACCTACTTATCA+TGG 0.430365 4:+54623739 MsG0480021169.01.T01:CDS
AACTAACTGAATGCCAGAAA+TGG 0.439494 4:+54624772 MsG0480021169.01.T01:three_prime_UTR
CTCTCAGTAATAACCTCACC+GGG 0.446512 4:-54624582 None:intergenic
CATTTGCTAATTTAATCGCT+TGG 0.448024 4:-54624098 None:intergenic
AGGCCACTCTGCTGAAGCTC+TGG 0.449434 4:-54622969 None:intergenic
GAATTGTTTGTGAACTCGTT+GGG 0.450040 4:+54624280 MsG0480021169.01.T01:CDS
AGGTACTACTTGTGGGATCC+AGG 0.450761 4:+54623241 MsG0480021169.01.T01:CDS
TTTATCAATTATTATGAGAC+CGG 0.454597 4:-54624711 None:intergenic
AGCATGAATGGTAGGAAAAG+TGG 0.461977 4:+54621553 None:intergenic
TCATCTATGCTGCACATGTC+AGG 0.461997 4:+54623943 MsG0480021169.01.T01:CDS
TTCTCAAGCACTGAGATGCC+AGG 0.468757 4:-54624147 None:intergenic
GTTGAGATCTAGCAGCATCT+AGG 0.468914 4:-54624047 None:intergenic
ACCTCACCGGGGATCAATAC+AGG 0.471875 4:-54624570 None:intergenic
ATGGGAAATACGAGAGCGTT+GGG 0.472269 4:+54622895 MsG0480021169.01.T01:CDS
GAAGCTCACGGTGCACATCT+AGG 0.481340 4:+54623829 MsG0480021169.01.T01:CDS
AGCGGATGAAATCTTATATC+GGG 0.486805 4:+54624251 MsG0480021169.01.T01:CDS
AGTGAAGGTGCTGATATTAG+TGG 0.488793 4:+54624633 MsG0480021169.01.T01:CDS
CAATGGATCAATTGCAGGAA+TGG 0.490219 4:-54624184 None:intergenic
GCCGATAAATGACAATTTCG+AGG 0.493005 4:-54623308 None:intergenic
TTGAGATCTAGCAGCATCTA+GGG 0.495500 4:-54624046 None:intergenic
TTAGATCAGCCCCTTGCTGG+AGG 0.497118 4:-54623879 None:intergenic
CCGATAAAAGCCTTTGGACA+TGG 0.500427 4:-54624347 None:intergenic
CCTAGCTCAGCCCTCCAGCA+AGG 0.500862 4:+54623868 MsG0480021169.01.T01:CDS
GCATTGCACTGCCAGAATAT+GGG 0.501046 4:+54622877 MsG0480021169.01.T01:intron
TACATGGAGTAGATAATTGA+CGG 0.501521 4:-54624607 None:intergenic
TCAAAGACATGGTTTCTTGT+CGG 0.502260 4:+54623218 MsG0480021169.01.T01:CDS
GCTCGTGATTATATCATCAA+AGG 0.513244 4:-54624442 None:intergenic
TCGGGTAAATCATGAGCATA+TGG 0.513396 4:-54623113 None:intergenic
ATGAGTCGAGTCATCGAGGC+AGG 0.515945 4:-54623080 None:intergenic
GTTGTCAAGTTCAGGAAGCT+CGG 0.516331 4:-54623132 None:intergenic
TCCGTCTTTAGGTTGCTGAA+TGG 0.517648 4:-54624400 None:intergenic
CTTATTTGTCCATATCCTCC+AGG 0.518004 4:+54624543 MsG0480021169.01.T01:CDS
GATGCCAAAAGCAGGTAACT+AGG 0.520797 4:-54624024 None:intergenic
TAGTCAGGAACAATGTACTT+AGG 0.526216 4:-54623362 None:intergenic
CTCGTGATTATATCATCAAA+GGG 0.527399 4:-54624441 None:intergenic
TGCTCTCTTAAACAATTCCC+TGG 0.527535 4:+54624129 MsG0480021169.01.T01:CDS
GATTCCGTCTTATTCCTCTC+AGG 0.528052 4:+54621793 MsG0480021169.01.T01:CDS
AGGTTGCCATTATTGCTGCC+TGG 0.528356 4:-54623259 None:intergenic
CTGCAAATACCATGATAAGT+AGG 0.530759 4:-54623748 None:intergenic
GATCCATTGCGGCTTACTGT+TGG 0.532942 4:+54624198 MsG0480021169.01.T01:CDS
CTTGTCGGAGGTACTACTTG+TGG 0.534948 4:+54623233 MsG0480021169.01.T01:CDS
GGAATTGTTTGTGAACTCGT+TGG 0.535480 4:+54624279 MsG0480021169.01.T01:CDS
TAGCTCAGCCCTCCAGCAAG+GGG 0.536029 4:+54623870 MsG0480021169.01.T01:CDS
TTGTCAAGTTCAGGAAGCTC+GGG 0.537006 4:-54623131 None:intergenic
ATATCGGCCATGGTATTATC+CGG 0.538000 4:+54623332 MsG0480021169.01.T01:CDS
GCATGGCCTCTGTTATGTCC+AGG 0.538975 4:-54623053 None:intergenic
TAGATCAGCCCCTTGCTGGA+GGG 0.546263 4:-54623878 None:intergenic
CTACTCCATGTAAGAAGTGA+AGG 0.546727 4:+54624618 MsG0480021169.01.T01:CDS
GCTTTCAATGCACTAACTAA+AGG 0.546743 4:-54622996 None:intergenic
GGATCAATTGCAGGAATGGT+CGG 0.547650 4:-54624180 None:intergenic
GATTATATCATCAAAGGGTG+CGG 0.550639 4:-54624436 None:intergenic
ACTTAATCTTGGAACTTGTA+GGG 0.553282 4:+54624323 MsG0480021169.01.T01:CDS
GATAAAGGAGAGCATTGGTA+AGG 0.554559 4:+54624509 MsG0480021169.01.T01:CDS
CATCTAGGGATGCCAAAAGC+AGG 0.554864 4:-54624032 None:intergenic
TAATGAAAAGCATGAATGGT+AGG 0.558225 4:+54621545 None:intergenic
TATGGGAAATACGAGAGCGT+TGG 0.559578 4:+54622894 MsG0480021169.01.T01:CDS
TCTTTAGGTTGCTGAATGGA+AGG 0.572281 4:-54624396 None:intergenic
ATTATATCATCAAAGGGTGC+GGG 0.573064 4:-54624435 None:intergenic
AAACCAACAGTAAGCCGCAA+TGG 0.579462 4:-54624201 None:intergenic
GGAAGAATAAGAAATTCTCC+TGG 0.582632 4:-54623287 None:intergenic
TTCAAAGGGGACGACGAGAG+TGG 0.584389 4:-54621612 None:intergenic
GACAACCTCTTCTGTCCCCA+AGG 0.585276 4:+54623149 MsG0480021169.01.T01:CDS
GGGATCAATACAGGTATACC+TGG 0.585742 4:-54624561 None:intergenic
TCTCTCAGTAATAACCTCAC+CGG 0.588463 4:-54624583 None:intergenic
AGAGCATTGGTAAGGTTTCG+GGG 0.589661 4:+54624517 MsG0480021169.01.T01:CDS
TCCATTCAGCAACCTAAAGA+CGG 0.595343 4:+54624399 MsG0480021169.01.T01:CDS
GGTATACCTGTATTGATCCC+CGG 0.595466 4:+54624564 MsG0480021169.01.T01:CDS
ATAATGGCAACCTGTTCACC+AGG 0.600507 4:+54623269 MsG0480021169.01.T01:CDS
TTCAATGCACTAACTAAAGG+AGG 0.600852 4:-54622993 None:intergenic
CCAGAAATGGCGGTTGATGT+TGG 0.602819 4:+54624785 MsG0480021169.01.T01:three_prime_UTR
GTAACGATAAAGGAGAGCAT+TGG 0.603794 4:+54624504 MsG0480021169.01.T01:CDS
AATGTACTTAGGCACTGCAC+CGG 0.604306 4:-54623351 None:intergenic
TGTTTGGATCATCAAAGACA+TGG 0.608692 4:+54623207 MsG0480021169.01.T01:CDS
GTGAACTGCTGCATTCATTG+GGG 0.608779 4:-54622947 None:intergenic
TTTATCGGCTATATCGGCCA+TGG 0.610715 4:+54623322 MsG0480021169.01.T01:CDS
TTCCTGCAATTGATCCATTG+CGG 0.611741 4:+54624187 MsG0480021169.01.T01:CDS
CTGATTGTTGATGAAGCTCA+CGG 0.614046 4:+54623817 MsG0480021169.01.T01:CDS
CTTGGTTGAATACAGTATCA+GGG 0.615374 4:-54624080 None:intergenic
TCTCAAGCACTGAGATGCCA+GGG 0.617988 4:-54624146 None:intergenic
TCATCGAGGCAGGAGCGGCA+TGG 0.619945 4:-54623070 None:intergenic
CTTGTAGGGACCATGTCCAA+AGG 0.621624 4:+54624337 MsG0480021169.01.T01:CDS
ATCCAGGAACTCGAATTGGA+AGG 0.621828 4:+54623694 MsG0480021169.01.T01:CDS
ATGTCCAGGAAAGTGAAAAG+TGG 0.622147 4:-54623039 None:intergenic
TGGGTCCTTGGGGACAGAAG+AGG 0.623355 4:-54623154 None:intergenic
TCGAGTCATCGAGGCAGGAG+CGG 0.624226 4:-54623075 None:intergenic
CACTTTCCTGGACATAACAG+AGG 0.631168 4:+54623047 MsG0480021169.01.T01:CDS
ATGCACTAACTAAAGGAGGT+AGG 0.636092 4:-54622989 None:intergenic
TAACTGAATGCCAGAAATGG+CGG 0.637801 4:+54624775 MsG0480021169.01.T01:three_prime_UTR
TGAGCTTCATCAACAATCAG+AGG 0.639277 4:-54623814 None:intergenic
AAGACATGGTTTCTTGTCGG+AGG 0.641334 4:+54623221 MsG0480021169.01.T01:CDS
GCTTCTAATATGGGTCCTTG+GGG 0.641541 4:-54623164 None:intergenic
ACAACTAAAGAAGAAAGTAA+GGG 0.646717 4:-54624666 None:intergenic
AACAGTACAGTCTACTCACA+AGG 0.650174 4:+54623900 MsG0480021169.01.T01:CDS
ACCTGTATTGATCCCCGGTG+AGG 0.653105 4:+54624569 MsG0480021169.01.T01:CDS
GAGACCTGAGAGGAATAAGA+CGG 0.653253 4:-54621797 None:intergenic
TCACCAGAGCTTCAGCAGAG+TGG 0.657824 4:+54622966 MsG0480021169.01.T01:CDS
AAGCAGGTAACTAGGACTTG+TGG 0.664545 4:-54624016 None:intergenic
GAGCATTGGTAAGGTTTCGG+GGG 0.674611 4:+54624518 MsG0480021169.01.T01:CDS
TCCAATGAGTCGAGTCATCG+AGG 0.679421 4:-54623084 None:intergenic
TCACTAGACAAAATTCAGTG+TGG 0.688472 4:-54624845 None:intergenic
AGAAATGAAGGAGACCTGAG+AGG 0.688557 4:-54621807 None:intergenic
CACTGCACCGGATAATACCA+TGG 0.689114 4:-54623339 None:intergenic
ATCAATACAGGTATACCTGG+AGG 0.690812 4:-54624558 None:intergenic
TGGGTTATCAGGTTACGAAG+CGG 0.691347 4:+54624233 MsG0480021169.01.T01:CDS
AATGATTGGGACATCGCTGG+TGG 0.722880 4:+54623389 MsG0480021169.01.T01:CDS
TCTCAGTAATAACCTCACCG+GGG 0.800637 4:-54624581 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAATTTCTAATCATAT+AGG - Chr4:54622463-54622482 None:intergenic 10.0%
!! ATATAATTTAGTGTAATCAT+AGG + Chr4:54622246-54622265 MsG0480021169.01.T01:intron 15.0%
!! TAGATAAAGAAAAAATATCT+AGG + Chr4:54623974-54623993 MsG0480021169.01.T01:CDS 15.0%
!!! AATTTTTAATGTAGTTTAGT+TGG + Chr4:54622515-54622534 MsG0480021169.01.T01:intron 15.0%
!!! ATTTTTAATGTAGTTTAGTT+GGG + Chr4:54622516-54622535 MsG0480021169.01.T01:intron 15.0%
!!! CATTTTTTTCAAATTATCAT+CGG - Chr4:54622226-54622245 None:intergenic 15.0%
!!! GTATTTAAAATAAGAAATGA+AGG - Chr4:54621822-54621841 None:intergenic 15.0%
!! AAACACATACATATGATAAA+CGG - Chr4:54621891-54621910 None:intergenic 20.0%
!! TAAAAGAAAAGTAACGATAA+AGG + Chr4:54624494-54624513 MsG0480021169.01.T01:CDS 20.0%
!! TATTATACACTATCACAATT+TGG + Chr4:54623441-54623460 MsG0480021169.01.T01:intron 20.0%
!! TTTATCAATTATTATGAGAC+CGG - Chr4:54624714-54624733 None:intergenic 20.0%
!!! AATAAGCTGAAAACAAATTT+TGG + Chr4:54622143-54622162 MsG0480021169.01.T01:intron 20.0%
!!! ACAACATTTCATTTTAATTC+AGG - Chr4:54622758-54622777 None:intergenic 20.0%
!!! TAGATTTTCTCTAATTTGAA+TGG + Chr4:54624808-54624827 MsG0480021169.01.T01:three_prime_UTR 20.0%
!!! TTTTTAATGTAGTTTAGTTG+GGG + Chr4:54622517-54622536 MsG0480021169.01.T01:intron 20.0%
! AAGACTAAGGTAAAAAGATA+TGG + Chr4:54622412-54622431 MsG0480021169.01.T01:intron 25.0%
! AATATCTAATATCATTGTCG+AGG - Chr4:54623568-54623587 None:intergenic 25.0%
! ACAACTAAAGAAGAAAGTAA+GGG - Chr4:54624669-54624688 None:intergenic 25.0%
! AGACTAAGGTAAAAAGATAT+GGG + Chr4:54622413-54622432 MsG0480021169.01.T01:intron 25.0%
! AGTAAGAAAATCATGTAATC+AGG - Chr4:54623543-54623562 None:intergenic 25.0%
! TCCTGACTATAAAAATGATT+GGG + Chr4:54623376-54623395 MsG0480021169.01.T01:CDS 25.0%
! TTCCTGACTATAAAAATGAT+TGG + Chr4:54623375-54623394 MsG0480021169.01.T01:CDS 25.0%
! TTGTGTATAATACACCAAAA+TGG - Chr4:54622614-54622633 None:intergenic 25.0%
!! ATATCTTTTTACCTTAGTCT+TGG - Chr4:54622413-54622432 None:intergenic 25.0%
!! GTATGTGTTTCTGTATATAT+AGG + Chr4:54622039-54622058 MsG0480021169.01.T01:intron 25.0%
!! TGGCTATATTCTCTAAAAAT+TGG + Chr4:54623461-54623480 MsG0480021169.01.T01:intron 25.0%
!!! TTTTTTTCTTTCTTTTCCTG+TGG + Chr4:54623647-54623666 MsG0480021169.01.T01:intron 25.0%
AAGCGGATGAAATCTTATAT+CGG + Chr4:54624250-54624269 MsG0480021169.01.T01:CDS 30.0%
AATAACTGAATCACCTGTAA+TGG - Chr4:54623422-54623441 None:intergenic 30.0%
AATAGCTTATGTACACGTTT+GGG + Chr4:54621849-54621868 MsG0480021169.01.T01:intron 30.0%
ACTTAATCTTGGAACTTGTA+GGG + Chr4:54624323-54624342 MsG0480021169.01.T01:CDS 30.0%
ATCACTTATGCACTTAATCT+TGG + Chr4:54624312-54624331 MsG0480021169.01.T01:CDS 30.0%
CTCGTGATTATATCATCAAA+GGG - Chr4:54624444-54624463 None:intergenic 30.0%
GAAAGAGAACAACATTAGAT+AGG - Chr4:54623618-54623637 None:intergenic 30.0%
GAAATCTTATATCGGGATTT+CGG + Chr4:54624258-54624277 MsG0480021169.01.T01:CDS 30.0%
GACAACTAAAGAAGAAAGTA+AGG - Chr4:54624670-54624689 None:intergenic 30.0%
GTATAATACACCAAAATGGT+CGG - Chr4:54622610-54622629 None:intergenic 30.0%
GTCCTGAAATTCAATTTGTA+AGG - Chr4:54621764-54621783 None:intergenic 30.0%
GTCCTTACAAATTGAATTTC+AGG + Chr4:54621759-54621778 MsG0480021169.01.T01:CDS 30.0%
GTTAGCACTTACTGAAAAAT+GGG - Chr4:54621667-54621686 None:intergenic 30.0%
TAATAGCTTATGTACACGTT+TGG + Chr4:54621848-54621867 MsG0480021169.01.T01:intron 30.0%
TACATGGAGTAGATAATTGA+CGG - Chr4:54624610-54624629 None:intergenic 30.0%
TCTGTTTGTGCTTCTAATAT+GGG - Chr4:54623176-54623195 None:intergenic 30.0%
TGAATCCCAAAAATCCAAAA+CGG + Chr4:54621631-54621650 MsG0480021169.01.T01:CDS 30.0%
TTCTGTTTGTGCTTCTAATA+TGG - Chr4:54623177-54623196 None:intergenic 30.0%
TTTCAAATTATCATCGGTGT+TGG - Chr4:54622220-54622239 None:intergenic 30.0%
! AGAAGAAGAAAGAGATTTTG+TGG - Chr4:54621689-54621708 None:intergenic 30.0%
! CAACAATCAGAGGAATTTTA+CGG - Chr4:54623807-54623826 None:intergenic 30.0%
! CATTTGCTAATTTAATCGCT+TGG - Chr4:54624101-54624120 None:intergenic 30.0%
! CTTTGATGATCCAAACAATT+TGG - Chr4:54623204-54623223 None:intergenic 30.0%
! GGGTAATAAGATTAGCTAAA+GGG + Chr4:54622537-54622556 MsG0480021169.01.T01:intron 30.0%
! TCCTCGAAATTGTCATTTAT+CGG + Chr4:54623307-54623326 MsG0480021169.01.T01:CDS 30.0%
! TCCTTTTCTGTTTATTTGCA+GGG + Chr4:54621734-54621753 MsG0480021169.01.T01:intron 30.0%
! TTCCTTTTCTGTTTATTTGC+AGG + Chr4:54621733-54621752 MsG0480021169.01.T01:intron 30.0%
! TTGTCATTTATCGGCTATAT+CGG + Chr4:54623316-54623335 MsG0480021169.01.T01:CDS 30.0%
!! GAAAACCGTTTTGGATTTTT+GGG - Chr4:54621639-54621658 None:intergenic 30.0%
!! TCCCAATCATTTTTATAGTC+AGG - Chr4:54623380-54623399 None:intergenic 30.0%
!! TGAAAACCGTTTTGGATTTT+TGG - Chr4:54621640-54621659 None:intergenic 30.0%
!!! TTGGATTTTTGGGATTCAAA+GGG - Chr4:54621629-54621648 None:intergenic 30.0%
!!! TTTGGATTTTTGGGATTCAA+AGG - Chr4:54621630-54621649 None:intergenic 30.0%
AACTAACTGAATGCCAGAAA+TGG + Chr4:54624772-54624791 MsG0480021169.01.T01:three_prime_UTR 35.0%
ACACAGCTGAAGAAATTCTT+AGG + Chr4:54624740-54624759 MsG0480021169.01.T01:three_prime_UTR 35.0%
ACACTATCCTTCATTGCAAT+GGG + Chr4:54622808-54622827 MsG0480021169.01.T01:intron 35.0%
ACTTGCAAAAAATGCATCTC+TGG - Chr4:54624475-54624494 None:intergenic 35.0%
AGCCTCTTGTGTAAAAAACA+GGG - Chr4:54622642-54622661 None:intergenic 35.0%
AGCGGATGAAATCTTATATC+GGG + Chr4:54624251-54624270 MsG0480021169.01.T01:CDS 35.0%
ATCACTTCACCTACTTATCA+TGG + Chr4:54623739-54623758 MsG0480021169.01.T01:CDS 35.0%
ATGGGCGTAAAATTGATCTT+TGG + Chr4:54622431-54622450 MsG0480021169.01.T01:intron 35.0%
ATTGCAATGAAGGATAGTGT+AGG - Chr4:54622808-54622827 None:intergenic 35.0%
CACTTAATCTTGGAACTTGT+AGG + Chr4:54624322-54624341 MsG0480021169.01.T01:CDS 35.0%
CGATGTACATAAAAAACAGC+CGG + Chr4:54624692-54624711 MsG0480021169.01.T01:CDS 35.0%
CTAAATTAGCCCACCTAAAT+TGG - Chr4:54622004-54622023 None:intergenic 35.0%
CTGCAAATACCATGATAAGT+AGG - Chr4:54623751-54623770 None:intergenic 35.0%
CTTGCAAAAAATGCATCTCT+GGG - Chr4:54624474-54624493 None:intergenic 35.0%
CTTGGTTGAATACAGTATCA+GGG - Chr4:54624083-54624102 None:intergenic 35.0%
CTTGTGTAAAAAACAGGGTA+AGG - Chr4:54622637-54622656 None:intergenic 35.0%
GAATTGTTTGTGAACTCGTT+GGG + Chr4:54624280-54624299 MsG0480021169.01.T01:CDS 35.0%
GATTATATCATCAAAGGGTG+CGG - Chr4:54624439-54624458 None:intergenic 35.0%
GCTCGTGATTATATCATCAA+AGG - Chr4:54624445-54624464 None:intergenic 35.0%
GCTTTCAATGCACTAACTAA+AGG - Chr4:54622999-54623018 None:intergenic 35.0%
GGAAGAATAAGAAATTCTCC+TGG - Chr4:54623290-54623309 None:intergenic 35.0%
GGTTAGCACTTACTGAAAAA+TGG - Chr4:54621668-54621687 None:intergenic 35.0%
GTAGGAAAAGTGGAAGAAAA+TGG + Chr4:54621563-54621582 MsG0480021169.01.T01:CDS 35.0%
TAAACACTTGTGAGACTGTT+TGG - Chr4:54622338-54622357 None:intergenic 35.0%
TACACTATCCTTCATTGCAA+TGG + Chr4:54622807-54622826 MsG0480021169.01.T01:intron 35.0%
TAGCTAATCTTATTAGCCGA+GGG - Chr4:54622733-54622752 None:intergenic 35.0%
TAGTCAGGAACAATGTACTT+AGG - Chr4:54623365-54623384 None:intergenic 35.0%
TCAAAGACATGGTTTCTTGT+CGG + Chr4:54623218-54623237 MsG0480021169.01.T01:CDS 35.0%
TCATAATGAGGCAGTACTAA+TGG - Chr4:54622785-54622804 None:intergenic 35.0%
TCCCTGCAAATAAACAGAAA+AGG - Chr4:54621738-54621757 None:intergenic 35.0%
TGTTTGGATCATCAAAGACA+TGG + Chr4:54623207-54623226 MsG0480021169.01.T01:CDS 35.0%
TTATTCCCGATAAAAGCCTT+TGG - Chr4:54624356-54624375 None:intergenic 35.0%
TTCAATGCACTAACTAAAGG+AGG - Chr4:54622996-54623015 None:intergenic 35.0%
TTGCAAAAAATGCATCTCTG+GGG - Chr4:54624473-54624492 None:intergenic 35.0%
! ATTATATCATCAAAGGGTGC+GGG - Chr4:54624438-54624457 None:intergenic 35.0%
! GGGGTAATAAGATTAGCTAA+AGG + Chr4:54622536-54622555 MsG0480021169.01.T01:intron 35.0%
! TTTCTTTCTTTTCCTGTGGT+TGG + Chr4:54623651-54623670 MsG0480021169.01.T01:intron 35.0%
!! ATGTGTTTTTGTAACCCAGT+TGG + Chr4:54621903-54621922 MsG0480021169.01.T01:intron 35.0%
!! GCTGTTTTCATAAGCTATTC+TGG + Chr4:54622108-54622127 MsG0480021169.01.T01:intron 35.0%
!! TGTGTTTTTGTAACCCAGTT+GGG + Chr4:54621904-54621923 MsG0480021169.01.T01:intron 35.0%
!!! TACCCTGTTTTTTACACAAG+AGG + Chr4:54622637-54622656 MsG0480021169.01.T01:intron 35.0%
!!! TGGATTTTTGGGATTCAAAG+GGG - Chr4:54621628-54621647 None:intergenic 35.0%
AAAAATGATTGGGACATCGC+TGG + Chr4:54623386-54623405 MsG0480021169.01.T01:CDS 40.0%
AACAGTACAGTCTACTCACA+AGG + Chr4:54623900-54623919 MsG0480021169.01.T01:CDS 40.0%
AAGAAATTCTCCTGGTGAAC+AGG - Chr4:54623282-54623301 None:intergenic 40.0%
ACAGAAGCAGCCAAATTGTT+TGG + Chr4:54623191-54623210 MsG0480021169.01.T01:CDS 40.0%
ACGTTCTAACGAAGACTGTT+TGG - Chr4:54622390-54622409 None:intergenic 40.0%
AGCTAATCTTATTAGCCGAG+GGG - Chr4:54622732-54622751 None:intergenic 40.0%
ATATCGGCCATGGTATTATC+CGG + Chr4:54623332-54623351 MsG0480021169.01.T01:CDS 40.0%
ATCAATACAGGTATACCTGG+AGG - Chr4:54624561-54624580 None:intergenic 40.0%
ATGCACTAACTAAAGGAGGT+AGG - Chr4:54622992-54623011 None:intergenic 40.0%
ATGTCCAGGAAAGTGAAAAG+TGG - Chr4:54623042-54623061 None:intergenic 40.0%
ATTGTGGTCATCTGACTGAA+AGG - Chr4:54622688-54622707 None:intergenic 40.0%
CAATGGATCAATTGCAGGAA+TGG - Chr4:54624187-54624206 None:intergenic 40.0%
CAGCCTCTTGTGTAAAAAAC+AGG - Chr4:54622643-54622662 None:intergenic 40.0%
CTACTCCATGTAAGAAGTGA+AGG + Chr4:54624618-54624637 MsG0480021169.01.T01:CDS 40.0%
CTAGCTAATCTTATTAGCCG+AGG - Chr4:54622734-54622753 None:intergenic 40.0%
CTCTCGTATTTCCCATATTC+TGG - Chr4:54622891-54622910 None:intergenic 40.0%
CTTATTTGTCCATATCCTCC+AGG + Chr4:54624543-54624562 MsG0480021169.01.T01:CDS 40.0%
GACAAAACCCATTGCAATGA+AGG - Chr4:54622818-54622837 None:intergenic 40.0%
GCACTTACTGAAAAATGGGA+AGG - Chr4:54621663-54621682 None:intergenic 40.0%
GCCGATAAATGACAATTTCG+AGG - Chr4:54623311-54623330 None:intergenic 40.0%
GCTTGGTTGAATACAGTATC+AGG - Chr4:54624084-54624103 None:intergenic 40.0%
GGAATTGTTTGTGAACTCGT+TGG + Chr4:54624279-54624298 MsG0480021169.01.T01:CDS 40.0%
GGATAGTGTAGGTCATAATG+AGG - Chr4:54622797-54622816 None:intergenic 40.0%
TAACTGAATGCCAGAAATGG+CGG + Chr4:54624775-54624794 MsG0480021169.01.T01:three_prime_UTR 40.0%
TCAGTAAGTACTCCGTCTTT+AGG - Chr4:54624414-54624433 None:intergenic 40.0%
TCCATTCAGCAACCTAAAGA+CGG + Chr4:54624399-54624418 MsG0480021169.01.T01:CDS 40.0%
TCGGGTAAATCATGAGCATA+TGG - Chr4:54623116-54623135 None:intergenic 40.0%
TCTCTCAGTAATAACCTCAC+CGG - Chr4:54624586-54624605 None:intergenic 40.0%
TGAGCTTCATCAACAATCAG+AGG - Chr4:54623817-54623836 None:intergenic 40.0%
TGCAAAAAATGCATCTCTGG+GGG - Chr4:54624472-54624491 None:intergenic 40.0%
TGCTCTCTTAAACAATTCCC+TGG + Chr4:54624129-54624148 MsG0480021169.01.T01:CDS 40.0%
TGCTTCTAATATGGGTCCTT+GGG - Chr4:54623168-54623187 None:intergenic 40.0%
TTCCTGCAATTGATCCATTG+CGG + Chr4:54624187-54624206 MsG0480021169.01.T01:CDS 40.0%
TTGAGATCTAGCAGCATCTA+GGG - Chr4:54624049-54624068 None:intergenic 40.0%
TTGGCGCAACAGTAAAATTG+TGG - Chr4:54622704-54622723 None:intergenic 40.0%
! AAGTCCTAGTTACCTGCTTT+TGG + Chr4:54624020-54624039 MsG0480021169.01.T01:CDS 40.0%
! ACAATTTTACTGTTGCGCCA+AGG + Chr4:54622703-54622722 MsG0480021169.01.T01:intron 40.0%
! CATGTCCAAAGGCTTTTATC+GGG + Chr4:54624348-54624367 MsG0480021169.01.T01:CDS 40.0%
! CCATGTCCAAAGGCTTTTAT+CGG + Chr4:54624347-54624366 MsG0480021169.01.T01:CDS 40.0%
! CTCGGCTAATAAGATTAGCT+AGG + Chr4:54622732-54622751 MsG0480021169.01.T01:intron 40.0%
! CTGATTGTTGATGAAGCTCA+CGG + Chr4:54623817-54623836 MsG0480021169.01.T01:CDS 40.0%
! GTAACGATAAAGGAGAGCAT+TGG + Chr4:54624504-54624523 MsG0480021169.01.T01:CDS 40.0%
!! AGTGAAGGTGCTGATATTAG+TGG + Chr4:54624633-54624652 MsG0480021169.01.T01:CDS 40.0%
!! GATAAAGGAGAGCATTGGTA+AGG + Chr4:54624509-54624528 MsG0480021169.01.T01:CDS 40.0%
!! TCATTGCAATGGGTTTTGTC+AGG + Chr4:54622818-54622837 MsG0480021169.01.T01:intron 40.0%
!! TCTTTAGGTTGCTGAATGGA+AGG - Chr4:54624399-54624418 None:intergenic 40.0%
AAACCAACAGTAAGCCGCAA+TGG - Chr4:54624204-54624223 None:intergenic 45.0%
AAGACATGGTTTCTTGTCGG+AGG + Chr4:54623221-54623240 MsG0480021169.01.T01:CDS 45.0%
AAGCAGGTAACTAGGACTTG+TGG - Chr4:54624019-54624038 None:intergenic 45.0%
ACAGGTATACCTGGAGGATA+TGG - Chr4:54624555-54624574 None:intergenic 45.0%
AGAAATGAAGGAGACCTGAG+AGG - Chr4:54621810-54621829 None:intergenic 45.0%
AGCATTGCACTGCCAGAATA+TGG + Chr4:54622876-54622895 MsG0480021169.01.T01:intron 45.0%
ATAATGGCAACCTGTTCACC+AGG + Chr4:54623269-54623288 MsG0480021169.01.T01:CDS 45.0%
ATCCAGGAACTCGAATTGGA+AGG + Chr4:54623694-54623713 MsG0480021169.01.T01:CDS 45.0%
ATTCTCCCCAGTGCCAATTT+AGG + Chr4:54621988-54622007 MsG0480021169.01.T01:intron 45.0%
CACTTTCCTGGACATAACAG+AGG + Chr4:54623047-54623066 MsG0480021169.01.T01:CDS 45.0%
CAGAAGAGGTTGTCAAGTTC+AGG - Chr4:54623143-54623162 None:intergenic 45.0%
CAGCACCTTCACTTCTTACA+TGG - Chr4:54624626-54624645 None:intergenic 45.0%
CCGATAAAAGCCTTTGGACA+TGG - Chr4:54624350-54624369 None:intergenic 45.0%
CGTTAGAACGTCCAAGACTA+AGG + Chr4:54622399-54622418 MsG0480021169.01.T01:intron 45.0%
CTCTCAGTAATAACCTCACC+GGG - Chr4:54624585-54624604 None:intergenic 45.0%
GAGACCTGAGAGGAATAAGA+CGG - Chr4:54621800-54621819 None:intergenic 45.0%
GAGACTGTTTGGAGAGCTTA+TGG - Chr4:54622327-54622346 None:intergenic 45.0%
GATGCCAAAAGCAGGTAACT+AGG - Chr4:54624027-54624046 None:intergenic 45.0%
GCATTGCACTGCCAGAATAT+GGG + Chr4:54622877-54622896 MsG0480021169.01.T01:intron 45.0%
GCTTCTAATATGGGTCCTTG+GGG - Chr4:54623167-54623186 None:intergenic 45.0%
GGATCAATTGCAGGAATGGT+CGG - Chr4:54624183-54624202 None:intergenic 45.0%
GGGATCAATACAGGTATACC+TGG - Chr4:54624564-54624583 None:intergenic 45.0%
GGTAACTAGGACTTGTGGTT+TGG - Chr4:54624014-54624033 None:intergenic 45.0%
GGTGAACTGCTGCATTCATT+GGG - Chr4:54622951-54622970 None:intergenic 45.0%
GTCTTCAGACTCGACTCTTA+AGG + Chr4:54623588-54623607 MsG0480021169.01.T01:intron 45.0%
GTGAACTGCTGCATTCATTG+GGG - Chr4:54622950-54622969 None:intergenic 45.0%
GTGCTTCTAATATGGGTCCT+TGG - Chr4:54623169-54623188 None:intergenic 45.0%
GTTGAGATCTAGCAGCATCT+AGG - Chr4:54624050-54624069 None:intergenic 45.0%
GTTGTCAAGTTCAGGAAGCT+CGG - Chr4:54623135-54623154 None:intergenic 45.0%
TCATCTATGCTGCACATGTC+AGG + Chr4:54623943-54623962 MsG0480021169.01.T01:CDS 45.0%
TCTCAGTAATAACCTCACCG+GGG - Chr4:54624584-54624603 None:intergenic 45.0%
TGCTATCCAGGAACTCGAAT+TGG + Chr4:54623690-54623709 MsG0480021169.01.T01:CDS 45.0%
TGGGTTATCAGGTTACGAAG+CGG + Chr4:54624233-54624252 MsG0480021169.01.T01:CDS 45.0%
TGGTGAACTGCTGCATTCAT+TGG - Chr4:54622952-54622971 None:intergenic 45.0%
TTGTCAAGTTCAGGAAGCTC+GGG - Chr4:54623134-54623153 None:intergenic 45.0%
! AATGTACTTAGGCACTGCAC+CGG - Chr4:54623354-54623373 None:intergenic 45.0%
! GACTTGTGGTTTGGAGAGTT+TGG - Chr4:54624005-54624024 None:intergenic 45.0%
! GATTCCGTCTTATTCCTCTC+AGG + Chr4:54621793-54621812 MsG0480021169.01.T01:CDS 45.0%
! GGTATACCTGTATTGATCCC+CGG + Chr4:54624564-54624583 MsG0480021169.01.T01:CDS 45.0%
! TATGGGAAATACGAGAGCGT+TGG + Chr4:54622894-54622913 MsG0480021169.01.T01:CDS 45.0%
! TGGGAAGGTGAAAACCGTTT+TGG - Chr4:54621648-54621667 None:intergenic 45.0%
! TGTAATCATAGGCGTCGTGT+CGG + Chr4:54622257-54622276 MsG0480021169.01.T01:intron 45.0%
! TTCCTTCCAATTCGAGTTCC+TGG - Chr4:54623699-54623718 None:intergenic 45.0%
! TTTATCGGCTATATCGGCCA+TGG + Chr4:54623322-54623341 MsG0480021169.01.T01:CDS 45.0%
!! AGAGCATTGGTAAGGTTTCG+GGG + Chr4:54624517-54624536 MsG0480021169.01.T01:CDS 45.0%
!! ATGGGAAATACGAGAGCGTT+GGG + Chr4:54622895-54622914 MsG0480021169.01.T01:CDS 45.0%
!! GAGAGCATTGGTAAGGTTTC+GGG + Chr4:54624516-54624535 MsG0480021169.01.T01:CDS 45.0%
!! GGAGAGCATTGGTAAGGTTT+CGG + Chr4:54624515-54624534 MsG0480021169.01.T01:CDS 45.0%
!! TCCGTCTTTAGGTTGCTGAA+TGG - Chr4:54624403-54624422 None:intergenic 45.0%
!! TGCTCTGGTGGTATTGACTT+GGG + Chr4:54621928-54621947 MsG0480021169.01.T01:intron 45.0%
!! TTGTCGGAGGTACTACTTGT+GGG + Chr4:54623234-54623253 MsG0480021169.01.T01:CDS 45.0%
!! TTTTGGGAGCTTGGGTTATC+AGG + Chr4:54624222-54624241 MsG0480021169.01.T01:CDS 45.0%
!!! ACTGTTGGTTTTTGGGAGCT+TGG + Chr4:54624213-54624232 MsG0480021169.01.T01:CDS 45.0%
!!! CTGTTGGTTTTTGGGAGCTT+GGG + Chr4:54624214-54624233 MsG0480021169.01.T01:CDS 45.0%
!!! GCGGCTTACTGTTGGTTTTT+GGG + Chr4:54624206-54624225 MsG0480021169.01.T01:CDS 45.0%
!!! TGCGGCTTACTGTTGGTTTT+TGG + Chr4:54624205-54624224 MsG0480021169.01.T01:CDS 45.0%
AATGATTGGGACATCGCTGG+TGG + Chr4:54623389-54623408 MsG0480021169.01.T01:CDS 50.0%
AGCCCACCTAAATTGGCACT+GGG - Chr4:54621997-54622016 None:intergenic 50.0%
AGCCGCAATGGATCAATTGC+AGG - Chr4:54624192-54624211 None:intergenic 50.0%
AGGTACTACTTGTGGGATCC+AGG + Chr4:54623241-54623260 MsG0480021169.01.T01:CDS 50.0%
AGGTTGCCATTATTGCTGCC+TGG - Chr4:54623262-54623281 None:intergenic 50.0%
ATACCTGCAACACCAACCAC+AGG - Chr4:54623666-54623685 None:intergenic 50.0%
CACTGCACCGGATAATACCA+TGG - Chr4:54623342-54623361 None:intergenic 50.0%
CATCTAGGGATGCCAAAAGC+AGG - Chr4:54624035-54624054 None:intergenic 50.0%
CCAACATCAACCGCCATTTC+TGG - Chr4:54624788-54624807 None:intergenic 50.0%
CTTGTAGGGACCATGTCCAA+AGG + Chr4:54624337-54624356 MsG0480021169.01.T01:CDS 50.0%
GATCCATTGCGGCTTACTGT+TGG + Chr4:54624198-54624217 MsG0480021169.01.T01:CDS 50.0%
TAGCCCACCTAAATTGGCAC+TGG - Chr4:54621998-54622017 None:intergenic 50.0%
TCAAACCTGAGACCTCGAGT+AGG - Chr4:54621969-54621988 None:intergenic 50.0%
TCCAATGAGTCGAGTCATCG+AGG - Chr4:54623087-54623106 None:intergenic 50.0%
TCCCCAGTGCCAATTTAGGT+GGG + Chr4:54621992-54622011 MsG0480021169.01.T01:intron 50.0%
TGAAGCACAGACACAGACAC+CGG + Chr4:54622172-54622191 MsG0480021169.01.T01:intron 50.0%
TGGGATCCAGGCAGCAATAA+TGG + Chr4:54623253-54623272 MsG0480021169.01.T01:CDS 50.0%
! CCAGAAATGGCGGTTGATGT+TGG + Chr4:54624785-54624804 MsG0480021169.01.T01:three_prime_UTR 50.0%
! GGCAGCATTTTCTTCAGCTG+AGG - Chr4:54623021-54623040 None:intergenic 50.0%
! GTTGGTGTCTATGTCGTGTC+CGG - Chr4:54622194-54622213 None:intergenic 50.0%
!! CTGCTCTGGTGGTATTGACT+TGG + Chr4:54621927-54621946 MsG0480021169.01.T01:intron 50.0%
!! CTTGTCGGAGGTACTACTTG+TGG + Chr4:54623233-54623252 MsG0480021169.01.T01:CDS 50.0%
!! GAGCATTGGTAAGGTTTCGG+GGG + Chr4:54624518-54624537 MsG0480021169.01.T01:CDS 50.0%
!! GCAGGTATTGAGTGCTATCC+AGG + Chr4:54623678-54623697 MsG0480021169.01.T01:intron 50.0%
!! GTGGTATTGACTTGGGACCT+GGG + Chr4:54621935-54621954 MsG0480021169.01.T01:intron 50.0%
!! TATCATCGGTGTTGGCGTGT+TGG - Chr4:54622212-54622231 None:intergenic 50.0%
!! TCTCAAGCACTGAGATGCCA+GGG - Chr4:54624149-54624168 None:intergenic 50.0%
!! TGGTGGTGTCACTCCATTAC+AGG + Chr4:54623406-54623425 MsG0480021169.01.T01:CDS 50.0%
!! TTCTCAAGCACTGAGATGCC+AGG - Chr4:54624150-54624169 None:intergenic 50.0%
!! TTTCCTGTGGTTGGTGTTGC+AGG + Chr4:54623660-54623679 MsG0480021169.01.T01:intron 50.0%
!!! GCTGCCACTTTTCACTTTCC+TGG + Chr4:54623035-54623054 MsG0480021169.01.T01:CDS 50.0%
AAAATGGTCGGACCCCTTCC+CGG - Chr4:54622598-54622617 None:intergenic 55.0%
ACAAAGCTCCCGCATACGCA+GGG + Chr4:54622571-54622590 MsG0480021169.01.T01:intron 55.0%
ACCTCACCGGGGATCAATAC+AGG - Chr4:54624573-54624592 None:intergenic 55.0%
ATGAGTCGAGTCATCGAGGC+AGG - Chr4:54623083-54623102 None:intergenic 55.0%
CACAGACACTCCTCAGACGT+CGG - Chr4:54622292-54622311 None:intergenic 55.0%
CTCCCCAGTGCCAATTTAGG+TGG + Chr4:54621991-54622010 MsG0480021169.01.T01:intron 55.0%
CTGTTAGATCAGCCCCTTGC+TGG - Chr4:54623885-54623904 None:intergenic 55.0%
GAAGCTCACGGTGCACATCT+AGG + Chr4:54623829-54623848 MsG0480021169.01.T01:CDS 55.0%
GACAACCTCTTCTGTCCCCA+AGG + Chr4:54623149-54623168 MsG0480021169.01.T01:CDS 55.0%
GCATGGCCTCTGTTATGTCC+AGG - Chr4:54623056-54623075 None:intergenic 55.0%
GCCCACCTAAATTGGCACTG+GGG - Chr4:54621996-54622015 None:intergenic 55.0%
GCCTCGATGACTCGACTCAT+TGG + Chr4:54623083-54623102 MsG0480021169.01.T01:CDS 55.0%
TAGATCAGCCCCTTGCTGGA+GGG - Chr4:54623881-54623900 None:intergenic 55.0%
TATTAGCCGAGGGGAAGCCT+TGG - Chr4:54622723-54622742 None:intergenic 55.0%
TCACCAGAGCTTCAGCAGAG+TGG + Chr4:54622966-54622985 MsG0480021169.01.T01:CDS 55.0%
TTAGATCAGCCCCTTGCTGG+AGG - Chr4:54623882-54623901 None:intergenic 55.0%
TTCAAAGGGGACGACGAGAG+TGG - Chr4:54621615-54621634 None:intergenic 55.0%
! ACCTGTATTGATCCCCGGTG+AGG + Chr4:54624569-54624588 MsG0480021169.01.T01:CDS 55.0%
! ATGCGGGAGCTTTGTGCATC+AGG - Chr4:54622566-54622585 None:intergenic 55.0%
!! GGTGGTATTGACTTGGGACC+TGG + Chr4:54621934-54621953 MsG0480021169.01.T01:intron 55.0%
ACCACCAGAGCAGCCCAACT+GGG - Chr4:54621920-54621939 None:intergenic 60.0%
AGGCCACTCTGCTGAAGCTC+TGG - Chr4:54622972-54622991 None:intergenic 60.0%
CACAAAGCTCCCGCATACGC+AGG + Chr4:54622570-54622589 MsG0480021169.01.T01:intron 60.0%
CTAGCTCAGCCCTCCAGCAA+GGG + Chr4:54623869-54623888 MsG0480021169.01.T01:CDS 60.0%
GTAACCCAGTTGGGCTGCTC+TGG + Chr4:54621913-54621932 MsG0480021169.01.T01:intron 60.0%
GTGCTCCTACTCGAGGTCTC+AGG + Chr4:54621961-54621980 MsG0480021169.01.T01:intron 60.0%
TACCACCAGAGCAGCCCAAC+TGG - Chr4:54621921-54621940 None:intergenic 60.0%
TAGCTCAGCCCTCCAGCAAG+GGG + Chr4:54623870-54623889 MsG0480021169.01.T01:CDS 60.0%
TCGAGTCATCGAGGCAGGAG+CGG - Chr4:54623078-54623097 None:intergenic 60.0%
TGGGTCCTTGGGGACAGAAG+AGG - Chr4:54623157-54623176 None:intergenic 60.0%
! GGGAAGGGGTCCGACCATTT+TGG + Chr4:54622597-54622616 MsG0480021169.01.T01:intron 60.0%
! TCGAGTAGGAGCACACTCCC+AGG - Chr4:54621955-54621974 None:intergenic 60.0%
! TGGGAGTGTGCTCCTACTCG+AGG + Chr4:54621954-54621973 MsG0480021169.01.T01:intron 60.0%
ACCCAGTTGGGCTGCTCTGG+TGG + Chr4:54621916-54621935 MsG0480021169.01.T01:intron 65.0%
CATACGCAGGGTCCGGGAAG+GGG + Chr4:54622583-54622602 MsG0480021169.01.T01:intron 65.0%
CCTAGCTCAGCCCTCCAGCA+AGG + Chr4:54623868-54623887 MsG0480021169.01.T01:CDS 65.0%
CCTTGCTGGAGGGCTGAGCT+AGG - Chr4:54623871-54623890 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG - Chr4:54622583-54622602 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG + Chr4:54622582-54622601 MsG0480021169.01.T01:intron 65.0%
GCGTCGAACACCGACGTCTG+AGG + Chr4:54622279-54622298 MsG0480021169.01.T01:intron 65.0%
GTTGCGCCAAGGCTTCCCCT+CGG + Chr4:54622714-54622733 MsG0480021169.01.T01:intron 65.0%
TCATCGAGGCAGGAGCGGCA+TGG - Chr4:54623073-54623092 None:intergenic 65.0%
TTCCCGGACCCTGCGTATGC+GGG - Chr4:54622582-54622601 None:intergenic 65.0%
CGCATACGCAGGGTCCGGGA+AGG + Chr4:54622581-54622600 MsG0480021169.01.T01:intron 70.0%
CTCCCGCATACGCAGGGTCC+GGG + Chr4:54622577-54622596 MsG0480021169.01.T01:intron 70.0%
GCTCCCGCATACGCAGGGTC+CGG + Chr4:54622576-54622595 MsG0480021169.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 54621560 54624860 54621560 ID=MsG0480021169.01;Name=MsG0480021169.01
Chr4 mRNA 54621560 54624860 54621560 ID=MsG0480021169.01.T01;Parent=MsG0480021169.01;Name=MsG0480021169.01.T01;_AED=0.32;_eAED=0.32;_QI=0|0.66|0.5|1|0.33|0.5|4|138|583
Chr4 exon 54621560 54621674 54621560 ID=MsG0480021169.01.T01:exon:20239;Parent=MsG0480021169.01.T01
Chr4 exon 54621755 54621814 54621755 ID=MsG0480021169.01.T01:exon:20240;Parent=MsG0480021169.01.T01
Chr4 exon 54622892 54623427 54622892 ID=MsG0480021169.01.T01:exon:20241;Parent=MsG0480021169.01.T01
Chr4 exon 54623682 54624860 54623682 ID=MsG0480021169.01.T01:exon:20242;Parent=MsG0480021169.01.T01
Chr4 CDS 54621560 54621674 54621560 ID=MsG0480021169.01.T01:cds;Parent=MsG0480021169.01.T01
Chr4 CDS 54621755 54621814 54621755 ID=MsG0480021169.01.T01:cds;Parent=MsG0480021169.01.T01
Chr4 CDS 54622892 54623427 54622892 ID=MsG0480021169.01.T01:cds;Parent=MsG0480021169.01.T01
Chr4 CDS 54623682 54624722 54623682 ID=MsG0480021169.01.T01:cds;Parent=MsG0480021169.01.T01
Chr4 three_prime_UTR 54624723 54624860 54624723 ID=MsG0480021169.01.T01:three_prime_utr;Parent=MsG0480021169.01.T01
Gene Sequence

>MsG0480021169.01.T01

ATGGTAGGAAAAGTGGAAGAAAATGGTGTATATTTCGTTCTTACTATTACTTCCACTCTCGTCGTCCCCTTTGAATCCCAAAAATCCAAAACGGTTTTCACCTTCCCATTTTTCAGGACGTCCTTACAAATTGAATTTCAGGACTTCATTGACGATTCCGTCTTATTCCTCTCAGAATATGGGAAATACGAGAGCGTTGGGACAGTGAGCACTGAATCAATCACAAACAACCCCAATGAATGCAGCAGTTCACCAGAGCTTCAGCAGAGTGGCCTACCTCCTTTAGTTAGTGCATTGAAAGCCTCAGCTGAAGAAAATGCTGCCACTTTTCACTTTCCTGGACATAACAGAGGCCATGCCGCTCCTGCCTCGATGACTCGACTCATTGGAAGAAGACCATATGCTCATGATTTACCCGAGCTTCCTGAACTTGACAACCTCTTCTGTCCCCAAGGACCCATATTAGAAGCACAAACAGAAGCAGCCAAATTGTTTGGATCATCAAAGACATGGTTTCTTGTCGGAGGTACTACTTGTGGGATCCAGGCAGCAATAATGGCAACCTGTTCACCAGGAGAATTTCTTATTCTTCCTCGAAATTGTCATTTATCGGCTATATCGGCCATGGTATTATCCGGTGCAGTGCCTAAGTACATTGTTCCTGACTATAAAAATGATTGGGACATCGCTGGTGGTGTCACTCCATTACAGGTATTGAGTGCTATCCAGGAACTCGAATTGGAAGGAAAAAAAGCAGCAGCAGTTTTCATCACTTCACCTACTTATCATGGTATTTGCAGTAACTTGAGCGACATTTCTGAGTTGTGTCATTACCGTAAAATTCCTCTGATTGTTGATGAAGCTCACGGTGCACATCTAGGATTTCATTCTGAACTGCCTAGCTCAGCCCTCCAGCAAGGGGCTGATCTAACAGTACAGTCTACTCACAAGGTTCTTTGCTCTCTTACTCAGTCATCTATGCTGCACATGTCAGGTGACATTGTAGATAAAGAAAAAATATCTAGGTGTCTCCAAACTCTCCAAACCACAAGTCCTAGTTACCTGCTTTTGGCATCCCTAGATGCTGCTAGATCTCAACTTAGTGAAAGCCCTGATACTGTATTCAACCAAGCGATTAAATTAGCAAATGAAGCAAAGTGCTCTCTTAAACAATTCCCTGGCATCTCAGTGCTTGAGAATTCAAGCTTTCCGACCATTCCTGCAATTGATCCATTGCGGCTTACTGTTGGTTTTTGGGAGCTTGGGTTATCAGGTTACGAAGCGGATGAAATCTTATATCGGGATTTCGGAATTGTTTGTGAACTCGTTGGGAATAAATCTATCACTTATGCACTTAATCTTGGAACTTGTAGGGACCATGTCCAAAGGCTTTTATCGGGAATAAAGCATCTAGCTGCAACATATCCTTCCATTCAGCAACCTAAAGACGGAGTACTTACTGAACCCGCACCCTTTGATGATATAATCACGAGCTTGACCCCCAGAGATGCATTTTTTGCAAGTAAAAGAAAAGTAACGATAAAGGAGAGCATTGGTAAGGTTTCGGGGGAGCTTATTTGTCCATATCCTCCAGGTATACCTGTATTGATCCCCGGTGAGGTTATTACTGAGAGAGCCGTCAATTATCTACTCCATGTAAGAAGTGAAGGTGCTGATATTAGTGGAGCATCTGATCCCTTACTTTCTTCTTTAGTTGTCTGCGATGTACATAAAAAACAGCCGGTCTCATAA

Protein sequence

>MsG0480021169.01.T01

MVGKVEENGVYFVLTITSTLVVPFESQKSKTVFTFPFFRTSLQIEFQDFIDDSVLFLSEYGKYESVGTVSTESITNNPNECSSSPELQQSGLPPLVSALKASAEENAATFHFPGHNRGHAAPASMTRLIGRRPYAHDLPELPELDNLFCPQGPILEAQTEAAKLFGSSKTWFLVGGTTCGIQAAIMATCSPGEFLILPRNCHLSAISAMVLSGAVPKYIVPDYKNDWDIAGGVTPLQVLSAIQELELEGKKAAAVFITSPTYHGICSNLSDISELCHYRKIPLIVDEAHGAHLGFHSELPSSALQQGADLTVQSTHKVLCSLTQSSMLHMSGDIVDKEKISRCLQTLQTTSPSYLLLASLDAARSQLSESPDTVFNQAIKLANEAKCSLKQFPGISVLENSSFPTIPAIDPLRLTVGFWELGLSGYEADEILYRDFGIVCELVGNKSITYALNLGTCRDHVQRLLSGIKHLAATYPSIQQPKDGVLTEPAPFDDIITSLTPRDAFFASKRKVTIKESIGKVSGELICPYPPGIPVLIPGEVITERAVNYLLHVRSEGADISGASDPLLSSLVVCDVHKKQPVS*