AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045017.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045017.01.T01 MTR_8g063460 100.000 116 0 0 1 116 1 116 3.56e-79 228
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045017.01.T01 AT2G17350 91.379 116 10 0 1 116 1 116 3.12e-62 186

Find 35 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAGAGAAAAGTGTCTTAA+TGG 0.248878 8:-52783487 MsG0880045017.01.T01:CDS
TCAGCAGGAACATTCCTCTT+TGG 0.261291 8:+52783316 None:intergenic
GAAATTTAATTCTTTAGTTT+TGG 0.267580 8:-52783240 MsG0880045017.01.T01:three_prime_UTR
CAGCAGGAACATTCCTCTTT+GGG 0.280949 8:+52783317 None:intergenic
CAACCTCGCGCTCACGTTCT+TGG 0.307172 8:+52786844 None:intergenic
AGCATTGGATGCTGATATTC+AGG 0.319410 8:-52786904 MsG0880045017.01.T01:CDS
AAAGAGAAAAGTGTCTTAAT+GGG 0.346020 8:-52783486 MsG0880045017.01.T01:CDS
CAAAAGTGTTAATACTTTCT+CGG 0.348318 8:-52783194 MsG0880045017.01.T01:three_prime_UTR
ACTTTGCTGGGATGACAAAA+AGG 0.366427 8:-52783368 MsG0880045017.01.T01:three_prime_UTR
GCTCTTGAAATTACAGTTAG+TGG 0.391880 8:-52783432 MsG0880045017.01.T01:CDS
TTTCAAAGCGATTCCTCAGC+AGG 0.428730 8:+52783301 None:intergenic
TAATTTCAAGAGCTCCATCT+TGG 0.452477 8:+52783442 None:intergenic
TAAATTCGTTGAGGAGTTGA+AGG 0.486907 8:-52786928 MsG0880045017.01.T01:CDS
TCAAGAAGCAAGATTGAAGA+TGG 0.497021 8:-52783526 MsG0880045017.01.T01:CDS
TTGCTGAGCGTGAAGCTGCT+TGG 0.497901 8:-52786824 MsG0880045017.01.T01:CDS
AGAGGTACATTAGTTGAGTT+AGG 0.509450 8:+52783276 None:intergenic
TGAGGAGTTGAAGGAAGCAT+TGG 0.523974 8:-52786919 MsG0880045017.01.T01:CDS
TGAGCGTGAAGCTGCTTGGA+AGG 0.525026 8:-52786820 MsG0880045017.01.T01:CDS
TCAAATCAAGATAACCAAGA+TGG 0.530922 8:-52783456 MsG0880045017.01.T01:CDS
TACCTCACGACGAGAAAGAT+CGG 0.577719 8:+52786797 None:intergenic
AGAGATAATAATCAAAGCAA+AGG 0.581327 8:-52787419 MsG0880045017.01.T01:intron
CATCCAAGAACGTGAGCGCG+AGG 0.582285 8:-52786847 MsG0880045017.01.T01:CDS
AGCAGGAACATTCCTCTTTG+GGG 0.594886 8:+52783318 None:intergenic
GGCCGATCTTTCTCGTCGTG+AGG 0.603600 8:-52786799 MsG0880045017.01.T01:intron
ATTTCGATTCATGTTCCTAG+AGG 0.606804 8:+52783258 None:intergenic
GCAGGAACATTCCTCTTTGG+GGG 0.611157 8:+52783319 None:intergenic
AACTCAACTAATGTACCTCT+AGG 0.611731 8:-52783273 MsG0880045017.01.T01:three_prime_UTR
TGGATGCTGATATTCAGGAT+AGG 0.621862 8:-52786899 MsG0880045017.01.T01:CDS
AAAGAGGAATGTTCCTGCTG+AGG 0.625640 8:-52783314 MsG0880045017.01.T01:three_prime_UTR
TATTCAGGATAGGATCATGA+AGG 0.627768 8:-52786889 MsG0880045017.01.T01:CDS
TCTGCGGATAAAAGCTGTGG+TGG 0.638704 8:-52786952 MsG0880045017.01.T01:CDS
AAGAGAAAAGTGTCTTAATG+GGG 0.648948 8:-52783485 MsG0880045017.01.T01:CDS
GTCTCTGCGGATAAAAGCTG+TGG 0.667580 8:-52786955 MsG0880045017.01.T01:CDS
TGTGGTGGATAAATTCGTTG+AGG 0.679452 8:-52786937 MsG0880045017.01.T01:CDS
TTTAGCTGAAGATGTCTCTG+CGG 0.737837 8:-52786968 MsG0880045017.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAATTTAGAAAC+TGG + Chr8:52785601-52785620 None:intergenic 10.0%
!! AAATAAGTAATTATAGAAAA+TGG - Chr8:52786647-52786666 MsG0880045017.01.T01:intron 10.0%
!! GTTATTATACAAATAAAATT+AGG + Chr8:52783941-52783960 None:intergenic 10.0%
!!! TTAAAAAAAAATGAAACTTT+TGG + Chr8:52785710-52785729 None:intergenic 10.0%
!! ATCATAAAAAATAACAGAAA+TGG - Chr8:52785231-52785250 MsG0880045017.01.T01:intron 15.0%
!! CAATACATATAATTTATTGA+TGG + Chr8:52784460-52784479 None:intergenic 15.0%
!! TCATAAAAAATAACAGAAAT+GGG - Chr8:52785232-52785251 MsG0880045017.01.T01:intron 15.0%
!!! ATGTAGTTTTCATAATAAAA+AGG - Chr8:52784055-52784074 MsG0880045017.01.T01:intron 15.0%
!!! ATTTGATTTTTGATAGAAAT+TGG + Chr8:52784506-52784525 None:intergenic 15.0%
!!! GAAATTTAATTCTTTAGTTT+TGG - Chr8:52787355-52787374 MsG0880045017.01.T01:intron 15.0%
!!! TCATACTAAGTATTTTATAT+AGG - Chr8:52786334-52786353 MsG0880045017.01.T01:intron 15.0%
!!! TCTGTTATTTTTTATGATTT+CGG + Chr8:52785229-52785248 None:intergenic 15.0%
!!! TCTTTTCAATTCAATTTATT+TGG - Chr8:52784933-52784952 MsG0880045017.01.T01:intron 15.0%
!! AAAAAATTTAGAAACTGGAA+TGG + Chr8:52785596-52785615 None:intergenic 20.0%
!! AAAAATTTAGAAACTGGAAT+GGG + Chr8:52785595-52785614 None:intergenic 20.0%
!! AAGTGTTTCAAATTGTATAA+TGG - Chr8:52785849-52785868 MsG0880045017.01.T01:intron 20.0%
!! ATCTCTTAAACTAAAGAAAA+TGG + Chr8:52784231-52784250 None:intergenic 20.0%
!! CATAAAAAATAACAGAAATG+GGG - Chr8:52785233-52785252 MsG0880045017.01.T01:intron 20.0%
!! TCAGTATGAGTATAATAAAA+AGG + Chr8:52784193-52784212 None:intergenic 20.0%
!! TCATAATAAAAAGGAATTCT+TGG - Chr8:52784064-52784083 MsG0880045017.01.T01:intron 20.0%
!! TCTCTTAAACTAAAGAAAAT+GGG + Chr8:52784230-52784249 None:intergenic 20.0%
!! TTGTGTAAATAAATTCTGTT+TGG - Chr8:52784477-52784496 MsG0880045017.01.T01:intron 20.0%
!!! AATGAATAATTGGATTCTTT+TGG - Chr8:52783586-52783605 MsG0880045017.01.T01:intron 20.0%
!!! ATTCTTATACGATTTTTTCT+AGG - Chr8:52787428-52787447 MsG0880045017.01.T01:five_prime_UTR 20.0%
!!! ATTTTATGATAGAAATCGAA+GGG + Chr8:52784536-52784555 None:intergenic 20.0%
!!! TAAGACTTGATAGTATATTT+GGG - Chr8:52785343-52785362 MsG0880045017.01.T01:intron 20.0%
!!! TATTTTATGATAGAAATCGA+AGG + Chr8:52784537-52784556 None:intergenic 20.0%
!!! TCATTTGGATAACTTTAAAA+TGG - Chr8:52785424-52785443 MsG0880045017.01.T01:intron 20.0%
!!! TTTAAAATGGTTAAAGTGAA+AGG - Chr8:52785437-52785456 MsG0880045017.01.T01:intron 20.0%
!!! TTTAATGATTTTGATCAAAC+TGG - Chr8:52785725-52785744 MsG0880045017.01.T01:intron 20.0%
!!! TTTTATTGCTTAGAAAGAAA+GGG - Chr8:52783548-52783567 MsG0880045017.01.T01:intron 20.0%
!!! TTTTTATTGCTTAGAAAGAA+AGG - Chr8:52783547-52783566 MsG0880045017.01.T01:intron 20.0%
! AAAATTTAGAAACTGGAATG+GGG + Chr8:52785594-52785613 None:intergenic 25.0%
! AAAGTTATCCAAATGATCAA+AGG + Chr8:52785420-52785439 None:intergenic 25.0%
! AACATTTCCGTTGTATATAT+TGG - Chr8:52785977-52785996 MsG0880045017.01.T01:intron 25.0%
! AAGTGGATAGAAAACAAATA+AGG + Chr8:52786423-52786442 None:intergenic 25.0%
! ACTGTTAACCTCATATTAAT+CGG + Chr8:52786263-52786282 None:intergenic 25.0%
! AGAGATAATAATCAAAGCAA+AGG - Chr8:52783176-52783195 MsG0880045017.01.T01:three_prime_UTR 25.0%
! AGGTAAAAGAAATAGTTCAA+TGG - Chr8:52785795-52785814 MsG0880045017.01.T01:intron 25.0%
! AGTGGATAGAAAACAAATAA+GGG + Chr8:52786422-52786441 None:intergenic 25.0%
! ATATATGATAAAACCCTTAC+TGG - Chr8:52786506-52786525 MsG0880045017.01.T01:intron 25.0%
! ATCGAAGATAAAATTATACG+CGG + Chr8:52784971-52784990 None:intergenic 25.0%
! ATTCTACCATAGCTAATTAT+AGG - Chr8:52784145-52784164 MsG0880045017.01.T01:intron 25.0%
! ATTGGAGAGTTATATTTACT+AGG - Chr8:52786852-52786871 MsG0880045017.01.T01:CDS 25.0%
! CTCGTAATGATAATACAATT+TGG + Chr8:52783239-52783258 None:intergenic 25.0%
! CTTCTTTAGCTGAATATTTA+AGG - Chr8:52786233-52786252 MsG0880045017.01.T01:intron 25.0%
! GATTGATCAAATAATTATCC+TGG - Chr8:52785114-52785133 MsG0880045017.01.T01:intron 25.0%
! TAATTAAGACCTTATATGCA+GGG + Chr8:52786721-52786740 None:intergenic 25.0%
! TATATGATAAAACCCTTACT+GGG - Chr8:52786507-52786526 MsG0880045017.01.T01:intron 25.0%
! TGCAAAATTGAAAAACAATG+AGG + Chr8:52787034-52787053 None:intergenic 25.0%
! TGTGATGTATAGCTTATATT+TGG - Chr8:52786090-52786109 MsG0880045017.01.T01:intron 25.0%
! TTGCTATATTCATTATCACA+GGG - Chr8:52785889-52785908 MsG0880045017.01.T01:intron 25.0%
! TTTGGATATCTAATTTGAGT+GGG + Chr8:52784601-52784620 None:intergenic 25.0%
!! AATTTATTGATGGCAATTTC+TGG + Chr8:52784450-52784469 None:intergenic 25.0%
!! CATTTTTGATGTATTTGAGA+TGG - Chr8:52784107-52784126 MsG0880045017.01.T01:intron 25.0%
!! CTAAGACTTGATAGTATATT+TGG - Chr8:52785342-52785361 MsG0880045017.01.T01:intron 25.0%
!! GAATTGTTTTCTCTTTAGAT+TGG - Chr8:52786834-52786853 MsG0880045017.01.T01:CDS 25.0%
!! GGATGAATATTTCAACATTT+TGG - Chr8:52783978-52783997 MsG0880045017.01.T01:intron 25.0%
!! GGTCATTTCTAAATTCTTTT+TGG - Chr8:52785816-52785835 MsG0880045017.01.T01:intron 25.0%
!! TAATTTTATCTTCGATGTCA+CGG - Chr8:52784975-52784994 MsG0880045017.01.T01:intron 25.0%
!! TTTGCTATATTCATTATCAC+AGG - Chr8:52785888-52785907 MsG0880045017.01.T01:intron 25.0%
!!! AAAGAGAAAAGTGTCTTAAT+GGG - Chr8:52787109-52787128 MsG0880045017.01.T01:intron 25.0%
!!! ACTTTTTCTTTTGAAATCTG+AGG + Chr8:52787204-52787223 None:intergenic 25.0%
!!! CAAAAGTGTTAATACTTTCT+CGG - Chr8:52787401-52787420 MsG0880045017.01.T01:intron 25.0%
!!! GTTGGACAATTTTTAATTTC+TGG - Chr8:52786120-52786139 MsG0880045017.01.T01:intron 25.0%
!!! TCATTGTTTTTCAATTTTGC+AGG - Chr8:52787033-52787052 MsG0880045017.01.T01:intron 25.0%
!!! TGGTTTTGGAAATGAATAAT+TGG - Chr8:52783576-52783595 MsG0880045017.01.T01:intron 25.0%
!!! TTATTTGTTTTCTATCCACT+TGG - Chr8:52786422-52786441 MsG0880045017.01.T01:intron 25.0%
AAAGAGAATTCCATTGTAGA+AGG - Chr8:52784863-52784882 MsG0880045017.01.T01:intron 30.0%
AACAAAATGCCCTTGAAATT+TGG - Chr8:52786567-52786586 MsG0880045017.01.T01:intron 30.0%
AACAATCAATAGCAAAGCTA+AGG + Chr8:52784736-52784755 None:intergenic 30.0%
AAGAAAAAGTAAGACTTTGC+TGG - Chr8:52787214-52787233 MsG0880045017.01.T01:intron 30.0%
AAGAGAATTCCATTGTAGAA+GGG - Chr8:52784864-52784883 MsG0880045017.01.T01:intron 30.0%
AATTGTATAATGGTGTCTGT+TGG - Chr8:52785859-52785878 MsG0880045017.01.T01:intron 30.0%
ACAAATTGTCCTATAACCTT+AGG + Chr8:52785044-52785063 None:intergenic 30.0%
ACAATCAATAGCAAAGCTAA+GGG + Chr8:52784735-52784754 None:intergenic 30.0%
ACCATGTCCAATATATACAA+CGG + Chr8:52785987-52786006 None:intergenic 30.0%
ACTGGTAACATCCAAAATAT+AGG + Chr8:52786030-52786049 None:intergenic 30.0%
ACTTCACCTATAATTAGCTA+TGG + Chr8:52784154-52784173 None:intergenic 30.0%
AGAAAAAGTAAGACTTTGCT+GGG - Chr8:52787215-52787234 MsG0880045017.01.T01:intron 30.0%
AGAAAACCATAATCAACACA+TGG + Chr8:52784026-52784045 None:intergenic 30.0%
AGAATTTGAATGAACCAAGT+AGG + Chr8:52783824-52783843 None:intergenic 30.0%
AGTGAAAGGATAAAGCAATA+TGG - Chr8:52785451-52785470 MsG0880045017.01.T01:intron 30.0%
ATACAATCATTTCCCAATCA+AGG + Chr8:52786193-52786212 None:intergenic 30.0%
ATATGATAAAACCCTTACTG+GGG - Chr8:52786508-52786527 MsG0880045017.01.T01:intron 30.0%
ATCTCTAACTCCAAATTTCA+AGG + Chr8:52786580-52786599 None:intergenic 30.0%
ATTGTTGGATGGAAATGAAA+TGG - Chr8:52784294-52784313 MsG0880045017.01.T01:intron 30.0%
ATTGTTTCCTGTTAGATGTA+GGG - Chr8:52784750-52784769 MsG0880045017.01.T01:intron 30.0%
CAAATTGTCCTATAACCTTA+GGG + Chr8:52785043-52785062 None:intergenic 30.0%
CATACCAAGTTCTTCTTATA+TGG - Chr8:52785928-52785947 MsG0880045017.01.T01:intron 30.0%
CATATAAGAAGAACTTGGTA+TGG + Chr8:52785930-52785949 None:intergenic 30.0%
CTAATTAAGACCTTATATGC+AGG + Chr8:52786722-52786741 None:intergenic 30.0%
CTTATATTTGGTCTAGATGT+TGG - Chr8:52786102-52786121 MsG0880045017.01.T01:intron 30.0%
GATATCCAAACATAGTTTAC+AGG - Chr8:52784611-52784630 MsG0880045017.01.T01:intron 30.0%
GCTGTAAACACTATAAACAA+TGG + Chr8:52784339-52784358 None:intergenic 30.0%
GTAAAAGTTACATAGTGACA+TGG - Chr8:52786672-52786691 MsG0880045017.01.T01:intron 30.0%
GTAACTGATATTCATGTTGA+AGG - Chr8:52785527-52785546 MsG0880045017.01.T01:intron 30.0%
GTGAAAGGATAAAGCAATAT+GGG - Chr8:52785452-52785471 MsG0880045017.01.T01:intron 30.0%
GTTTGGATATCTAATTTGAG+TGG + Chr8:52784602-52784621 None:intergenic 30.0%
TAGATATTGATGCAGTTTCA+AGG - Chr8:52786293-52786312 MsG0880045017.01.T01:intron 30.0%
TATGTATTCGTATTAGTGCT+AGG + Chr8:52783266-52783285 None:intergenic 30.0%
TCAAATCAAGATAACCAAGA+TGG - Chr8:52787139-52787158 MsG0880045017.01.T01:intron 30.0%
TCTCTAACTCCAAATTTCAA+GGG + Chr8:52786579-52786598 None:intergenic 30.0%
TGTACTTTCAATATTCTGGT+TGG - Chr8:52784415-52784434 MsG0880045017.01.T01:intron 30.0%
TGTGTGTACTTTCAATATTC+TGG - Chr8:52784411-52784430 MsG0880045017.01.T01:intron 30.0%
TTAACCTCATATTAATCGGA+TGG + Chr8:52786259-52786278 None:intergenic 30.0%
TTAAGAGATAGTCTACAACA+GGG - Chr8:52784242-52784261 MsG0880045017.01.T01:intron 30.0%
TTCCTATAGTGCATGAATTA+TGG - Chr8:52785184-52785203 MsG0880045017.01.T01:intron 30.0%
TTTAAGAGATAGTCTACAAC+AGG - Chr8:52784241-52784260 MsG0880045017.01.T01:intron 30.0%
! AGGTATGTTTCTGTCTTATT+TGG - Chr8:52783196-52783215 MsG0880045017.01.T01:three_prime_UTR 30.0%
! ATCCTCTTTTCTACATAGAT+GGG - Chr8:52783884-52783903 MsG0880045017.01.T01:intron 30.0%
! GTACTTTCAATATTCTGGTT+GGG - Chr8:52784416-52784435 MsG0880045017.01.T01:intron 30.0%
! GTTGTTTGGTTTAGAAAACA+AGG - Chr8:52783483-52783502 MsG0880045017.01.T01:CDS 30.0%
! TATCCTCTTTTCTACATAGA+TGG - Chr8:52783883-52783902 MsG0880045017.01.T01:intron 30.0%
! TCTACATCTGAAACTAAAGT+AGG + Chr8:52785144-52785163 None:intergenic 30.0%
!! AAGAGAAAAGTGTCTTAATG+GGG - Chr8:52787110-52787129 MsG0880045017.01.T01:intron 30.0%
!! ATGATTTTGATCAAACTGGA+AGG - Chr8:52785729-52785748 MsG0880045017.01.T01:intron 30.0%
!! CTTAGAAAGAAAGGGTATTA+TGG - Chr8:52783556-52783575 MsG0880045017.01.T01:intron 30.0%
!! GAAAGAGAAAAGTGTCTTAA+TGG - Chr8:52787108-52787127 MsG0880045017.01.T01:intron 30.0%
!!! AAGAAAGGGTATTATGGTTT+TGG - Chr8:52783562-52783581 MsG0880045017.01.T01:intron 30.0%
AAACCATAATCAACACATGG+CGG + Chr8:52784023-52784042 None:intergenic 35.0%
AACAAATAAGGGAGAGTGAA+AGG + Chr8:52786411-52786430 None:intergenic 35.0%
AACTCAACTAATGTACCTCT+AGG - Chr8:52787322-52787341 MsG0880045017.01.T01:intron 35.0%
AATAATCCAGATTCAAAGGC+TGG + Chr8:52786698-52786717 None:intergenic 35.0%
AATCATTTCCCAATCAAGGA+AGG + Chr8:52786189-52786208 None:intergenic 35.0%
AGAGAATTCCATTGTAGAAG+GGG - Chr8:52784865-52784884 MsG0880045017.01.T01:intron 35.0%
AGCCATAATTCATGCACTAT+AGG + Chr8:52785189-52785208 None:intergenic 35.0%
AGGGAATAATCCAGATTCAA+AGG + Chr8:52786702-52786721 None:intergenic 35.0%
ATTACATGATGCAAAAGCAG+TGG + Chr8:52786946-52786965 None:intergenic 35.0%
ATTTCGATTCATGTTCCTAG+AGG + Chr8:52787340-52787359 None:intergenic 35.0%
CAATCAATAGCAAAGCTAAG+GGG + Chr8:52784734-52784753 None:intergenic 35.0%
CTAATTTGAGTGGGATGAAA+TGG + Chr8:52784592-52784611 None:intergenic 35.0%
GAAACTAAAGTAGGAAAACC+AGG + Chr8:52785135-52785154 None:intergenic 35.0%
GAAATTCCAATCACGTTGTT+TGG - Chr8:52783469-52783488 MsG0880045017.01.T01:CDS 35.0%
GATTGTTTCCTGTTAGATGT+AGG - Chr8:52784749-52784768 MsG0880045017.01.T01:intron 35.0%
GCTCTTGAAATTACAGTTAG+TGG - Chr8:52787163-52787182 MsG0880045017.01.T01:intron 35.0%
GTCTCCATATAAGAAGAACT+TGG + Chr8:52785935-52785954 None:intergenic 35.0%
GTGGTATATTACTAGTGAAG+CGG - Chr8:52786971-52786990 MsG0880045017.01.T01:exon 35.0%
TAAATTCGTTGAGGAGTTGA+AGG - Chr8:52783667-52783686 MsG0880045017.01.T01:intron 35.0%
TAACACATATTTGTCACTGC+TGG - Chr8:52783957-52783976 MsG0880045017.01.T01:intron 35.0%
TAAGAGATAGTCTACAACAG+GGG - Chr8:52784243-52784262 MsG0880045017.01.T01:intron 35.0%
TAATTTCAAGAGCTCCATCT+TGG + Chr8:52787156-52787175 None:intergenic 35.0%
TACCTACCAAAAAGCTAAAC+AGG + Chr8:52785780-52785799 None:intergenic 35.0%
TACTCATACTGAGTAGATAC+TGG - Chr8:52784201-52784220 MsG0880045017.01.T01:intron 35.0%
TATTCAGGATAGGATCATGA+AGG - Chr8:52783706-52783725 MsG0880045017.01.T01:intron 35.0%
TCAAGAAGCAAGATTGAAGA+TGG - Chr8:52787069-52787088 MsG0880045017.01.T01:intron 35.0%
TCCGTTGTATATATTGGACA+TGG - Chr8:52785983-52786002 MsG0880045017.01.T01:intron 35.0%
TCTAAACCAAACAACGTGAT+TGG + Chr8:52783478-52783497 None:intergenic 35.0%
TCTGACATCCTTTGATCATT+TGG - Chr8:52785409-52785428 MsG0880045017.01.T01:intron 35.0%
TGATCAAACTGGAAGGTAAA+AGG - Chr8:52785736-52785755 MsG0880045017.01.T01:intron 35.0%
TGGATTATTCCCTGCATATA+AGG - Chr8:52786709-52786728 MsG0880045017.01.T01:intron 35.0%
TTCCCATCTATGTAGAAAAG+AGG + Chr8:52783889-52783908 None:intergenic 35.0%
TTGAATGTAAGCACATGTGT+CGG - Chr8:52783399-52783418 MsG0880045017.01.T01:CDS 35.0%
TTGCATCATGTAATGATCTG+TGG - Chr8:52786952-52786971 MsG0880045017.01.T01:CDS 35.0%
! AGAGGTACATTAGTTGAGTT+AGG + Chr8:52787322-52787341 None:intergenic 35.0%
! ATCGAAGGTGTATTTGATGT+TGG + Chr8:52783434-52783453 None:intergenic 35.0%
! GGATTCTTTTGGATGTAGTT+AGG - Chr8:52783597-52783616 MsG0880045017.01.T01:intron 35.0%
! TCTTTTGGATGTAGTTAGGT+TGG - Chr8:52783601-52783620 MsG0880045017.01.T01:intron 35.0%
! TTTGCAGCATTTAGGGTTTA+GGG + Chr8:52783915-52783934 None:intergenic 35.0%
!! AGGAATTCTTGGTAATGTAG+TGG - Chr8:52784075-52784094 MsG0880045017.01.T01:intron 35.0%
!! TTTTGCAGCATTTAGGGTTT+AGG + Chr8:52783916-52783935 None:intergenic 35.0%
!!! ATCCTGTTTAGCTTTTTGGT+AGG - Chr8:52785775-52785794 MsG0880045017.01.T01:intron 35.0%
!!! CGAGAGTGTTTTGTATTACT+AGG - Chr8:52784789-52784808 MsG0880045017.01.T01:intron 35.0%
!!! TCAGATCCTGTTTAGCTTTT+TGG - Chr8:52785771-52785790 MsG0880045017.01.T01:intron 35.0%
!!! TCTTTTGAAATCTGAGGCAA+CGG + Chr8:52787198-52787217 None:intergenic 35.0%
!!! TCTTTTTTTGCCTCACATTG+AGG - Chr8:52785620-52785639 MsG0880045017.01.T01:intron 35.0%
AACCATAATCAACACATGGC+GGG + Chr8:52784022-52784041 None:intergenic 40.0%
AACCCCAGAGACATATATGA+AGG + Chr8:52786757-52786776 None:intergenic 40.0%
AAGGCCATCCGATTAATATG+AGG - Chr8:52786252-52786271 MsG0880045017.01.T01:intron 40.0%
ACACCTTCGATCAGAAAACA+AGG - Chr8:52783443-52783462 MsG0880045017.01.T01:CDS 40.0%
ACCCCAGAGACATATATGAA+GGG + Chr8:52786756-52786775 None:intergenic 40.0%
ACCCTTCATATATGTCTCTG+GGG - Chr8:52786752-52786771 MsG0880045017.01.T01:intron 40.0%
ACTTTGCTGGGATGACAAAA+AGG - Chr8:52787227-52787246 MsG0880045017.01.T01:intron 40.0%
ATCATAGGACTCTCCTCAAA+AGG + Chr8:52785494-52785513 None:intergenic 40.0%
CACCCTTCATATATGTCTCT+GGG - Chr8:52786751-52786770 MsG0880045017.01.T01:intron 40.0%
CCTAACCAACACTTCTATTC+CGG - Chr8:52785657-52785676 MsG0880045017.01.T01:intron 40.0%
GAATATCAGTTACTGCGACA+TGG + Chr8:52785520-52785539 None:intergenic 40.0%
GAATGAGAACTCTCTTCCAA+GGG + Chr8:52784894-52784913 None:intergenic 40.0%
GAGACATATATGAAGGGTGA+AGG + Chr8:52786750-52786769 None:intergenic 40.0%
GAGACTTGAACAAGAAACAC+TGG + Chr8:52786048-52786067 None:intergenic 40.0%
GGGTTCCTGTAAACTATGTT+TGG + Chr8:52784619-52784638 None:intergenic 40.0%
GGTGTATTTGATGTTGGACA+TGG + Chr8:52783428-52783447 None:intergenic 40.0%
GTGTCAGTGTCAATTATCAC+TGG + Chr8:52783327-52783346 None:intergenic 40.0%
GTGTTGCAGAAAAGTCTAAC+CGG + Chr8:52785679-52785698 None:intergenic 40.0%
TCACCCTTCATATATGTCTC+TGG - Chr8:52786750-52786769 MsG0880045017.01.T01:intron 40.0%
TCATTTCCATCCAACAATCC+AGG + Chr8:52784292-52784311 None:intergenic 40.0%
TCCTCAAAAGGCAAGCAAAT+TGG + Chr8:52785482-52785501 None:intergenic 40.0%
TGAATGAGAACTCTCTTCCA+AGG + Chr8:52784895-52784914 None:intergenic 40.0%
TGGATGCTGATATTCAGGAT+AGG - Chr8:52783696-52783715 MsG0880045017.01.T01:intron 40.0%
TTGAGAGACCAACACTCATA+CGG - Chr8:52785555-52785574 MsG0880045017.01.T01:intron 40.0%
TTTAGCTGAAGATGTCTCTG+CGG - Chr8:52783627-52783646 MsG0880045017.01.T01:intron 40.0%
! AGCATTGGATGCTGATATTC+AGG - Chr8:52783691-52783710 MsG0880045017.01.T01:intron 40.0%
! GTGTGTGGTGTCCTATATTT+TGG - Chr8:52786016-52786035 MsG0880045017.01.T01:intron 40.0%
! TAGGGCTTTTGCAGCATTTA+GGG + Chr8:52783922-52783941 None:intergenic 40.0%
! TCTAACCGGAATAGAAGTGT+TGG + Chr8:52785665-52785684 None:intergenic 40.0%
! TTAGGGCTTTTGCAGCATTT+AGG + Chr8:52783923-52783942 None:intergenic 40.0%
!! TGTGGTGGATAAATTCGTTG+AGG - Chr8:52783658-52783677 MsG0880045017.01.T01:intron 40.0%
!! TTCTATCCACTTGGTTTGTG+CGG - Chr8:52786431-52786450 MsG0880045017.01.T01:intron 40.0%
!!! TCTCCTTGTTTTCTGATCGA+AGG + Chr8:52783449-52783468 None:intergenic 40.0%
AAAGAGGAATGTTCCTGCTG+AGG - Chr8:52787281-52787300 MsG0880045017.01.T01:intron 45.0%
AAATTGAAGGGGGGAAACAG+GGG + Chr8:52784362-52784381 None:intergenic 45.0%
AAGGGATTCCCCTTCTACAA+TGG + Chr8:52784876-52784895 None:intergenic 45.0%
AATATCCACACGACTCTCGA+TGG - Chr8:52786378-52786397 MsG0880045017.01.T01:intron 45.0%
ACTTGCTTCACACACGTTCT+GGG - Chr8:52786917-52786936 MsG0880045017.01.T01:CDS 45.0%
AGCAGGAACATTCCTCTTTG+GGG + Chr8:52787280-52787299 None:intergenic 45.0%
ATAGTTTACAGGAACCCCAC+AGG - Chr8:52784622-52784641 MsG0880045017.01.T01:intron 45.0%
ATCCTCAGCCTCCAAATTGA+AGG + Chr8:52784375-52784394 None:intergenic 45.0%
ATCTTGTTCCTGTTGCCCTA+AGG - Chr8:52785025-52785044 MsG0880045017.01.T01:intron 45.0%
ATTGTAGAAGGGGAATCCCT+TGG - Chr8:52784875-52784894 MsG0880045017.01.T01:intron 45.0%
CAAATGGTAGCACTGTGAAC+AGG + Chr8:52784702-52784721 None:intergenic 45.0%
CAAATTGAAGGGGGGAAACA+GGG + Chr8:52784363-52784382 None:intergenic 45.0%
CAACAATCCAGGCTTAGAAC+GGG + Chr8:52784281-52784300 None:intergenic 45.0%
CAGCAGGAACATTCCTCTTT+GGG + Chr8:52787281-52787300 None:intergenic 45.0%
CCAACAATCCAGGCTTAGAA+CGG + Chr8:52784282-52784301 None:intergenic 45.0%
GTTCACAGTGCTACCATTTG+AGG - Chr8:52784702-52784721 MsG0880045017.01.T01:intron 45.0%
TAAGGGGTGAGATCCTCAAA+TGG + Chr8:52784718-52784737 None:intergenic 45.0%
TACCTCACGACGAGAAAGAT+CGG + Chr8:52783801-52783820 None:intergenic 45.0%
TCAGCAGGAACATTCCTCTT+TGG + Chr8:52787282-52787301 None:intergenic 45.0%
TCCTATAACCTTAGGGCAAC+AGG + Chr8:52785036-52785055 None:intergenic 45.0%
TCCTCAGCCTCCAAATTGAA+GGG + Chr8:52784374-52784393 None:intergenic 45.0%
TCCTGTTGCCCTAAGGTTAT+AGG - Chr8:52785032-52785051 MsG0880045017.01.T01:intron 45.0%
TCTAAGCCTGGATTGTTGGA+TGG - Chr8:52784283-52784302 MsG0880045017.01.T01:intron 45.0%
TGATAAAACCCTTACTGGGG+TGG - Chr8:52786511-52786530 MsG0880045017.01.T01:intron 45.0%
TTAAACCATCGAGAGTCGTG+TGG + Chr8:52786386-52786405 None:intergenic 45.0%
TTCCTGTTAGATGTAGGGAC+AGG - Chr8:52784755-52784774 MsG0880045017.01.T01:intron 45.0%
TTTCAAAGCGATTCCTCAGC+AGG + Chr8:52787297-52787316 None:intergenic 45.0%
! AACATTCCTCTTTGGGGGAA+GGG + Chr8:52787274-52787293 None:intergenic 45.0%
! AGACTTTTCTGCAACACGAC+TGG - Chr8:52785682-52785701 MsG0880045017.01.T01:intron 45.0%
! TGAGGAGTTGAAGGAAGCAT+TGG - Chr8:52783676-52783695 MsG0880045017.01.T01:intron 45.0%
!! CCGGAATAGAAGTGTTGGTT+AGG + Chr8:52785660-52785679 None:intergenic 45.0%
!! GCCAATTTGCTTGCCTTTTG+AGG - Chr8:52785478-52785497 MsG0880045017.01.T01:intron 45.0%
!! TAGAAGTGTTGGTTAGGTGC+TGG + Chr8:52785654-52785673 None:intergenic 45.0%
!! TTATTATACAAATAAAATTA+GGG + Chr8:52783940-52783959 None:intergenic 5.0%
!! TTTCAAATTAAAATTATTAA+AGG + Chr8:52783368-52783387 None:intergenic 5.0%
!!! ATTTTTAAATTAATATATTG+TGG - Chr8:52783512-52783531 MsG0880045017.01.T01:CDS 5.0%
!!! TTAATAATTTTAATTTGAAA+AGG - Chr8:52783368-52783387 MsG0880045017.01.T01:three_prime_UTR 5.0%
AACGTGTGCCGTATGAGTGT+TGG + Chr8:52785566-52785585 None:intergenic 50.0%
AATTGAAGGGGGGAAACAGG+GGG + Chr8:52784361-52784380 None:intergenic 50.0%
ACAGGCTCAATGGGAAGAGA+GGG - Chr8:52784640-52784659 MsG0880045017.01.T01:intron 50.0%
ACATGGCCAGCCTTTGAATC+TGG - Chr8:52786689-52786708 MsG0880045017.01.T01:intron 50.0%
ACTGCGACATGGCACATCAT+AGG + Chr8:52785509-52785528 None:intergenic 50.0%
CACTTGCTTCACACACGTTC+TGG - Chr8:52786916-52786935 MsG0880045017.01.T01:CDS 50.0%
CATGGTTGTGTGTGTGTGTG+TGG - Chr8:52786001-52786020 MsG0880045017.01.T01:intron 50.0%
CCAAATTGAAGGGGGGAAAC+AGG + Chr8:52784364-52784383 None:intergenic 50.0%
CCTCAGCCTCCAAATTGAAG+GGG + Chr8:52784373-52784392 None:intergenic 50.0%
CCTGCTGACCTTCCTTGATT+GGG - Chr8:52786178-52786197 MsG0880045017.01.T01:intron 50.0%
CCTGTTTCCCCCCTTCAATT+TGG - Chr8:52784361-52784380 MsG0880045017.01.T01:intron 50.0%
CTCAGCCTCCAAATTGAAGG+GGG + Chr8:52784372-52784391 None:intergenic 50.0%
CTTGCTTCACACACGTTCTG+GGG - Chr8:52786918-52786937 MsG0880045017.01.T01:CDS 50.0%
GCAGGAACATTCCTCTTTGG+GGG + Chr8:52787279-52787298 None:intergenic 50.0%
GTCTCTGCGGATAAAAGCTG+TGG - Chr8:52783640-52783659 MsG0880045017.01.T01:intron 50.0%
GTTTCCCCCCTTCAATTTGG+AGG - Chr8:52784364-52784383 MsG0880045017.01.T01:intron 50.0%
TAAAACCCTTACTGGGGTGG+TGG - Chr8:52786514-52786533 MsG0880045017.01.T01:intron 50.0%
TCAGCCTCCAAATTGAAGGG+GGG + Chr8:52784371-52784390 None:intergenic 50.0%
TCCTGCTGACCTTCCTTGAT+TGG - Chr8:52786177-52786196 MsG0880045017.01.T01:intron 50.0%
TCTCTTCCCATTGAGCCTGT+GGG + Chr8:52784640-52784659 None:intergenic 50.0%
TCTGCGGATAAAAGCTGTGG+TGG - Chr8:52783643-52783662 MsG0880045017.01.T01:intron 50.0%
TGCCTGTCCCTACATCTAAC+AGG + Chr8:52784760-52784779 None:intergenic 50.0%
! CCGTTCTAAGCCTGGATTGT+TGG - Chr8:52784279-52784298 MsG0880045017.01.T01:intron 50.0%
! GAACATTCCTCTTTGGGGGA+AGG + Chr8:52787275-52787294 None:intergenic 50.0%
! TGTGAATCCCGTTCTAAGCC+TGG - Chr8:52784271-52784290 MsG0880045017.01.T01:intron 50.0%
!! CACCCGCCATGTGTTGATTA+TGG - Chr8:52784017-52784036 MsG0880045017.01.T01:intron 50.0%
!!! CTCTGGGGTTTTGTTGCAGT+TGG - Chr8:52786767-52786786 MsG0880045017.01.T01:intron 50.0%
AAGAGAGGGGGGAGAGAACA+GGG - Chr8:52784654-52784673 MsG0880045017.01.T01:intron 55.0%
AGGAACCCCACAGGCTCAAT+GGG - Chr8:52784631-52784650 MsG0880045017.01.T01:intron 55.0%
AGGCTCAATGGGAAGAGAGG+GGG - Chr8:52784642-52784661 MsG0880045017.01.T01:intron 55.0%
CACAGGCTCAATGGGAAGAG+AGG - Chr8:52784639-52784658 MsG0880045017.01.T01:intron 55.0%
CAGGCTCAATGGGAAGAGAG+GGG - Chr8:52784641-52784660 MsG0880045017.01.T01:intron 55.0%
CCCAATCAAGGAAGGTCAGC+AGG + Chr8:52786181-52786200 None:intergenic 55.0%
CCCCTTCAATTTGGAGGCTG+AGG - Chr8:52784370-52784389 MsG0880045017.01.T01:intron 55.0%
CTCTCTTCCCATTGAGCCTG+TGG + Chr8:52784641-52784660 None:intergenic 55.0%
CTCTTCCCATTGAGCCTGTG+GGG + Chr8:52784639-52784658 None:intergenic 55.0%
GAGACACCGCACAAACCAAG+TGG + Chr8:52786440-52786459 None:intergenic 55.0%
GGAGAGAACAGGGGTTAGGA+CGG - Chr8:52784664-52784683 MsG0880045017.01.T01:intron 55.0%
GGAGTCGTGTCCTCAATGTG+AGG + Chr8:52785633-52785652 None:intergenic 55.0%
TGAGCGTGAAGCTGCTTGGA+AGG - Chr8:52783775-52783794 MsG0880045017.01.T01:intron 55.0%
TTGAGCCACCACCCCAGTAA+GGG + Chr8:52786522-52786541 None:intergenic 55.0%
TTGCTGAGCGTGAAGCTGCT+TGG - Chr8:52783771-52783790 MsG0880045017.01.T01:intron 55.0%
! ATTCCTCTTTGGGGGAAGGG+AGG + Chr8:52787271-52787290 None:intergenic 55.0%
! CTCGTCGTGAGGTACCTACT+TGG - Chr8:52783807-52783826 MsG0880045017.01.T01:intron 55.0%
ACTCCTCCCTTCCCCCAAAG+AGG - Chr8:52787265-52787284 MsG0880045017.01.T01:intron 60.0%
AGAGAGGGGGGAGAGAACAG+GGG - Chr8:52784655-52784674 MsG0880045017.01.T01:intron 60.0%
CAACCTCGCGCTCACGTTCT+TGG + Chr8:52783754-52783773 None:intergenic 60.0%
CAGGAACCCCACAGGCTCAA+TGG - Chr8:52784630-52784649 MsG0880045017.01.T01:intron 60.0%
CATCCAAGAACGTGAGCGCG+AGG - Chr8:52783748-52783767 MsG0880045017.01.T01:intron 60.0%
GAAGAGAGGGGGGAGAGAAC+AGG - Chr8:52784653-52784672 MsG0880045017.01.T01:intron 60.0%
GGCCGATCTTTCTCGTCGTG+AGG - Chr8:52783796-52783815 MsG0880045017.01.T01:intron 60.0%
GGCTCAATGGGAAGAGAGGG+GGG - Chr8:52784643-52784662 MsG0880045017.01.T01:intron 60.0%
GTTGAGCCACCACCCCAGTA+AGG + Chr8:52786523-52786542 None:intergenic 60.0%
GGGGGGAGAGAACAGGGGTT+AGG - Chr8:52784660-52784679 MsG0880045017.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 52783170 52787447 52783170 ID=MsG0880045017.01;Name=MsG0880045017.01
Chr8 mRNA 52783170 52787447 52783170 ID=MsG0880045017.01.T01;Parent=MsG0880045017.01;Name=MsG0880045017.01.T01;_AED=0.44;_eAED=0.44;_QI=47|1|1|1|0.5|0.33|3|222|116
Chr8 exon 52783170 52783562 52783170 ID=MsG0880045017.01.T01:exon:22676;Parent=MsG0880045017.01.T01
Chr8 exon 52786800 52786998 52786800 ID=MsG0880045017.01.T01:exon:22675;Parent=MsG0880045017.01.T01
Chr8 exon 52787420 52787447 52787420 ID=MsG0880045017.01.T01:exon:22674;Parent=MsG0880045017.01.T01
Chr8 five_prime_UTR 52787420 52787447 52787420 ID=MsG0880045017.01.T01:five_prime_utr;Parent=MsG0880045017.01.T01
Chr8 five_prime_UTR 52786980 52786998 52786980 ID=MsG0880045017.01.T01:five_prime_utr;Parent=MsG0880045017.01.T01
Chr8 CDS 52786800 52786979 52786800 ID=MsG0880045017.01.T01:cds;Parent=MsG0880045017.01.T01
Chr8 CDS 52783392 52783562 52783392 ID=MsG0880045017.01.T01:cds;Parent=MsG0880045017.01.T01
Chr8 three_prime_UTR 52783170 52783391 52783170 ID=MsG0880045017.01.T01:three_prime_utr;Parent=MsG0880045017.01.T01
Gene Sequence

>MsG0880045017.01.T01

ATGTCTCTGCGGATAAAAGCTGTGGTGGATAAATTCGTTGAGGAGTTGAAGGAAGCATTGGATGCTGATATTCAGGATAGGATCATGAAGGACAGAGAGATGCAAAGTTACATCCAAGAACGTGAGCGCGAGGTTGCTGAGCGTGAAGCTGCTTGGAAGGCCGATCTTTCTCGTCGTGAGGCAGAGATTGTTCGTCAAGAAGCAAGATTGAAGATGGAGAGAGATAATCTTGAGAAAGAGAAAAGTGTCTTAATGGGGACTGCATCAAATCAAGATAACCAAGATGGAGCTCTTGAAATTACAGTTAGTGGTGAAAAATACCGTTGCCTCAGATTTCAAAAGAAAAAGTAA

Protein sequence

>MsG0880045017.01.T01

MSLRIKAVVDKFVEELKEALDADIQDRIMKDREMQSYIQEREREVAEREAAWKADLSRREAEIVRQEARLKMERDNLEKEKSVLMGTASNQDNQDGALEITVSGEKYRCLRFQKKK*