AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038348.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038348.01.T01 MTR_7g051940 98.148 216 3 1 1 216 1 215 3.05e-153 424
MsG0780038348.01.T01 MTR_7g405790 81.159 207 36 2 13 216 14 220 5.64e-120 340
MsG0780038348.01.T01 MTR_1g078200 71.875 192 54 0 1 192 1 192 7.13e-96 279
MsG0780038348.01.T01 MTR_4g064897 55.610 205 91 0 12 216 10 214 8.14e-80 238
MsG0780038348.01.T01 MTR_3g086980 55.924 211 83 3 12 215 14 221 1.62e-79 237
MsG0780038348.01.T01 MTR_8g089985 55.024 209 89 1 12 215 15 223 1.64e-79 237
MsG0780038348.01.T01 MTR_1g052475 53.333 210 92 1 12 215 13 222 2.11e-78 234
MsG0780038348.01.T01 MTR_3g069510 55.769 208 87 2 12 216 10 215 4.02e-78 233
MsG0780038348.01.T01 MTR_2g075950 61.850 173 66 0 12 184 11 183 2.41e-77 231
MsG0780038348.01.T01 MTR_0262s0050 54.286 210 88 2 12 213 13 222 5.35e-77 231
MsG0780038348.01.T01 MTR_2g005510 53.521 213 92 3 10 216 8 219 1.46e-76 230
MsG0780038348.01.T01 MTR_4g079350 56.522 207 87 2 12 216 11 216 1.48e-76 229
MsG0780038348.01.T01 MTR_2g014990 56.522 207 87 2 12 216 11 216 2.88e-76 229
MsG0780038348.01.T01 MTR_2g083860 60.571 175 69 0 12 186 11 185 3.28e-76 229
MsG0780038348.01.T01 MTR_8g036220 60.674 178 70 0 10 187 12 189 4.11e-76 229
MsG0780038348.01.T01 MTR_4g088090 54.545 209 88 2 12 216 11 216 9.99e-76 228
MsG0780038348.01.T01 MTR_2g090865 56.098 205 90 0 12 216 9 213 5.61e-75 226
MsG0780038348.01.T01 MTR_8g027220 55.556 180 80 0 12 191 24 203 9.66e-70 213
MsG0780038348.01.T01 MTR_6g079550 51.923 208 95 2 12 216 10 215 1.11e-65 202
MsG0780038348.01.T01 MTR_8g107070 56.250 192 80 2 12 203 12 199 4.35e-62 194
MsG0780038348.01.T01 MTR_7g081700 46.341 205 101 1 12 216 6 201 2.21e-59 186
MsG0780038348.01.T01 MTR_2g005500 49.153 177 90 0 12 188 7 183 5.62e-59 184
MsG0780038348.01.T01 MTR_7g117910 58.042 143 60 0 12 154 18 160 1.14e-58 184
MsG0780038348.01.T01 MTR_2g027660 44.928 207 111 1 13 216 5 211 6.78e-58 182
MsG0780038348.01.T01 MTR_6g021790 43.269 208 115 1 12 216 4 211 2.38e-55 176
MsG0780038348.01.T01 MTR_8g006970 43.415 205 108 1 12 216 20 216 5.67e-55 175
MsG0780038348.01.T01 MTR_1g068740 43.902 205 111 3 12 215 13 214 7.46e-55 174
MsG0780038348.01.T01 MTR_1g068730 43.902 205 111 3 12 215 13 214 1.27e-54 174
MsG0780038348.01.T01 MTR_8g006970 52.866 157 74 0 12 168 6 162 2.52e-54 172
MsG0780038348.01.T01 MTR_1g115325 42.439 205 114 3 12 215 13 214 3.42e-53 170
MsG0780038348.01.T01 MTR_8g031660 44.019 209 109 2 11 216 3 206 2.33e-51 165
MsG0780038348.01.T01 MTR_7g100020 47.879 165 85 1 12 175 13 177 6.60e-51 164
MsG0780038348.01.T01 MTR_2g096550 39.524 210 119 4 8 215 9 212 1.06e-50 164
MsG0780038348.01.T01 MTR_8g031870 51.923 156 75 0 13 168 5 160 1.08e-49 160
MsG0780038348.01.T01 MTR_8g031680 43.062 209 115 2 11 216 3 210 1.49e-49 160
MsG0780038348.01.T01 MTR_4g063160 41.346 208 113 5 12 215 13 215 1.10e-48 159
MsG0780038348.01.T01 MTR_8g093740 44.037 218 88 7 12 215 11 208 7.14e-48 156
MsG0780038348.01.T01 MTR_1g094220 41.304 184 107 1 2 184 19 202 4.40e-46 152
MsG0780038348.01.T01 MTR_2g102060 41.089 202 104 4 16 216 12 199 5.47e-46 151
MsG0780038348.01.T01 MTR_1g094220 43.023 172 97 1 2 172 19 190 1.16e-45 150
MsG0780038348.01.T01 MTR_3g096350 47.093 172 86 4 12 180 10 179 1.72e-45 150
MsG0780038348.01.T01 MTR_1g094220 42.286 175 100 1 2 175 19 193 2.08e-45 150
MsG0780038348.01.T01 MTR_4g099470 44.186 172 87 1 45 216 15 177 2.14e-45 149
MsG0780038348.01.T01 MTR_1g094220 43.529 170 95 1 2 170 19 188 2.81e-45 150
MsG0780038348.01.T01 MTR_3g064390 45.912 159 85 1 16 173 12 170 4.24e-45 149
MsG0780038348.01.T01 MTR_8g031830 49.020 153 78 0 13 165 5 157 1.21e-44 148
MsG0780038348.01.T01 MTR_7g103070 42.718 206 106 4 15 216 17 214 1.94e-44 148
MsG0780038348.01.T01 MTR_1g029450 41.818 220 93 7 12 216 15 214 1.97e-44 148
MsG0780038348.01.T01 MTR_1g062760 43.961 207 99 6 15 215 15 210 5.97e-44 146
MsG0780038348.01.T01 MTR_5g076590 37.811 201 113 3 16 216 12 200 2.92e-43 144
MsG0780038348.01.T01 MTR_3g087160 41.558 154 90 0 15 168 10 163 1.18e-42 143
MsG0780038348.01.T01 MTR_1g068730 47.692 130 68 0 12 141 13 142 1.61e-42 141
MsG0780038348.01.T01 MTR_5g013900 42.208 154 89 0 15 168 10 163 1.85e-42 142
MsG0780038348.01.T01 MTR_8g090215 41.558 154 90 0 15 168 10 163 2.53e-42 142
MsG0780038348.01.T01 MTR_1g068740 45.139 144 71 1 12 155 13 148 1.27e-41 140
MsG0780038348.01.T01 MTR_8g103550 42.857 168 95 1 16 182 11 178 7.56e-41 138
MsG0780038348.01.T01 MTR_4g098950 40.260 154 92 0 15 168 10 163 2.15e-40 137
MsG0780038348.01.T01 MTR_1g090717 41.706 211 106 6 12 216 13 212 2.23e-40 137
MsG0780038348.01.T01 MTR_3g096350 50.382 131 60 4 12 139 10 138 1.36e-36 125
MsG0780038348.01.T01 MTR_3g096350 50.820 122 55 4 12 130 10 129 7.39e-35 121
MsG0780038348.01.T01 MTR_2g101890 36.628 172 102 3 14 178 10 181 2.44e-34 122
MsG0780038348.01.T01 MTR_8g092020 37.725 167 97 3 14 173 12 178 3.47e-34 121
MsG0780038348.01.T01 MTR_8g093740 41.622 185 75 6 45 215 10 175 6.52e-34 119
MsG0780038348.01.T01 MTR_1g097420 36.628 172 102 2 14 178 8 179 7.14e-34 120
MsG0780038348.01.T01 MTR_3g064390 43.200 125 71 0 16 140 12 136 1.34e-33 118
MsG0780038348.01.T01 MTR_4g012940 32.212 208 126 4 14 214 8 207 2.30e-33 119
MsG0780038348.01.T01 MTR_4g069850 35.119 168 102 3 14 174 8 175 7.69e-33 117
MsG0780038348.01.T01 MTR_7g103070 40.361 166 87 4 55 216 1 158 1.12e-30 110
MsG0780038348.01.T01 MTR_6g039490 34.884 172 105 2 14 178 8 179 6.24e-30 110
MsG0780038348.01.T01 MTR_2g005500 36.158 177 73 1 12 188 7 143 7.41e-30 108
MsG0780038348.01.T01 MTR_1g097420 34.682 173 104 3 13 178 36 206 1.73e-28 107
MsG0780038348.01.T01 MTR_3g107713 28.571 161 112 3 15 175 14 171 3.29e-20 85.5
MsG0780038348.01.T01 MTR_3g107707 28.571 161 112 3 15 175 14 171 3.53e-20 85.5
MsG0780038348.01.T01 MTR_3g107717 28.571 161 112 3 15 175 14 171 3.72e-20 85.1
MsG0780038348.01.T01 MTR_2g090875 32.184 174 104 5 14 175 6 177 8.30e-20 83.6
MsG0780038348.01.T01 MTR_8g031810 40.404 99 45 1 13 111 5 89 5.05e-19 79.0
MsG0780038348.01.T01 MTR_3g078260 30.460 174 107 5 14 175 8 179 8.88e-19 81.3
MsG0780038348.01.T01 MTR_1452s0010 41.463 82 48 0 34 115 1 82 1.09e-18 78.2
MsG0780038348.01.T01 MTR_1g069245 41.739 115 61 3 8 121 90 199 3.30e-18 80.1
MsG0780038348.01.T01 MTR_5g022600 29.885 174 108 5 14 175 6 177 8.21e-18 78.6
MsG0780038348.01.T01 MTR_4g088055 30.233 172 106 5 14 173 6 175 8.30e-18 78.6
MsG0780038348.01.T01 MTR_8g075240 29.310 174 109 5 14 175 6 177 1.44e-17 77.8
MsG0780038348.01.T01 MTR_6g087980 29.834 181 113 5 14 182 6 184 1.53e-17 78.2
MsG0780038348.01.T01 MTR_4g073250 28.729 181 115 5 14 182 6 184 1.87e-17 77.4
MsG0780038348.01.T01 MTR_1686s0010 32.609 92 62 0 34 125 1 92 2.76e-15 68.9
MsG0780038348.01.T01 MTR_2g078000 57.143 49 21 0 75 123 46 94 3.59e-15 68.9
MsG0780038348.01.T01 MTR_4g113620 27.108 166 109 6 15 180 14 167 3.96e-15 71.6
MsG0780038348.01.T01 MTR_3g078260 33.333 114 73 3 16 128 10 121 9.71e-14 66.6
MsG0780038348.01.T01 MTR_5g092060 24.118 170 119 4 15 177 105 271 5.23e-13 67.0
MsG0780038348.01.T01 MTR_1g059590 27.711 166 113 3 17 182 398 556 2.72e-12 65.5
MsG0780038348.01.T01 MTR_8g099250 61.702 47 18 0 10 56 12 58 2.80e-12 60.5
MsG0780038348.01.T01 MTR_3g053480 59.574 47 19 0 10 56 12 58 3.83e-12 60.1
MsG0780038348.01.T01 MTR_2g078560 51.064 47 23 0 74 120 52 98 4.35e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038348.01.T01 AT3G07410 80.861 209 38 1 10 216 8 216 1.72e-122 346
MsG0780038348.01.T01 AT1G05810 79.439 214 42 1 5 216 3 216 3.85e-122 345
MsG0780038348.01.T01 AT1G05810 79.439 214 42 1 5 216 49 262 4.10e-122 347
MsG0780038348.01.T01 AT2G31680 78.605 215 43 2 5 216 3 217 2.13e-120 341
MsG0780038348.01.T01 AT2G43130 77.358 212 47 1 5 216 3 213 5.58e-119 337
MsG0780038348.01.T01 AT5G47520 64.091 220 75 1 1 216 1 220 1.28e-96 281
MsG0780038348.01.T01 AT1G07410 57.073 205 87 1 12 216 10 213 3.23e-80 239
MsG0780038348.01.T01 AT4G39990 55.769 208 89 2 12 216 15 222 4.48e-80 239
MsG0780038348.01.T01 AT4G18430 56.311 206 89 1 12 216 11 216 3.61e-79 236
MsG0780038348.01.T01 AT1G09630 52.535 217 100 2 1 216 1 215 6.87e-79 236
MsG0780038348.01.T01 AT3G12160 55.024 209 87 2 12 215 13 219 1.41e-78 235
MsG0780038348.01.T01 AT5G60860 57.488 207 85 2 12 216 11 216 3.24e-78 234
MsG0780038348.01.T01 AT1G06400 54.808 208 88 2 12 216 11 215 3.79e-77 231
MsG0780038348.01.T01 AT5G65270 52.804 214 89 3 12 216 15 225 4.31e-77 231
MsG0780038348.01.T01 AT1G16920 55.072 207 89 2 12 216 11 215 5.86e-77 231
MsG0780038348.01.T01 AT5G59150 63.158 171 63 0 12 182 10 180 1.06e-76 230
MsG0780038348.01.T01 AT3G46830 62.573 171 64 0 12 182 10 180 1.33e-76 230
MsG0780038348.01.T01 AT3G46830 62.573 171 64 0 12 182 10 180 1.33e-76 230
MsG0780038348.01.T01 AT1G28550 55.238 210 86 3 12 216 11 217 2.59e-76 229
MsG0780038348.01.T01 AT5G47960 62.428 173 65 0 12 184 13 185 4.51e-76 229
MsG0780038348.01.T01 AT4G18800 60.694 173 68 0 12 184 11 183 5.75e-75 226
MsG0780038348.01.T01 AT2G33870 53.738 214 91 3 8 216 7 217 7.15e-75 225
MsG0780038348.01.T01 AT5G45750 52.683 205 97 0 12 216 11 215 8.33e-75 225
MsG0780038348.01.T01 AT3G15060 53.991 213 83 3 12 216 11 216 1.36e-74 224
MsG0780038348.01.T01 AT1G73640 53.846 208 89 3 1 206 1 203 2.47e-69 212
MsG0780038348.01.T01 AT1G18200 58.152 184 76 1 1 184 1 183 1.86e-68 209
MsG0780038348.01.T01 AT1G01200 53.299 197 88 3 12 204 26 222 2.01e-65 202
MsG0780038348.01.T01 AT4G17170 45.146 206 110 1 13 215 5 210 5.78e-58 182
MsG0780038348.01.T01 AT4G35860 43.478 207 114 1 12 215 4 210 1.15e-57 181
MsG0780038348.01.T01 AT1G02130 43.415 205 108 1 12 216 6 202 4.80e-56 177
MsG0780038348.01.T01 AT4G17530 53.503 157 73 0 12 168 6 162 6.60e-56 177
MsG0780038348.01.T01 AT3G11730 51.220 164 80 0 12 175 6 169 1.04e-55 176
MsG0780038348.01.T01 AT4G17160 44.335 203 110 1 13 215 5 204 1.16e-54 174
MsG0780038348.01.T01 AT5G47200 52.866 157 74 0 12 168 6 162 6.85e-54 171
MsG0780038348.01.T01 AT3G46060 42.927 205 113 3 12 215 13 214 2.76e-53 171
MsG0780038348.01.T01 AT3G46060 42.927 205 113 3 12 215 13 214 2.76e-53 171
MsG0780038348.01.T01 AT3G46060 42.927 205 113 3 12 215 13 214 2.76e-53 171
MsG0780038348.01.T01 AT5G59150 59.843 127 51 0 56 182 3 129 1.03e-52 167
MsG0780038348.01.T01 AT5G59840 42.512 207 111 4 12 215 13 214 1.22e-52 169
MsG0780038348.01.T01 AT3G53610 42.512 207 111 5 12 215 13 214 4.20e-52 167
MsG0780038348.01.T01 AT3G53610 42.512 207 111 5 12 215 13 214 4.20e-52 167
MsG0780038348.01.T01 AT3G53610 42.512 207 111 5 12 215 13 214 4.20e-52 167
MsG0780038348.01.T01 AT3G09900 44.019 209 108 4 12 216 13 216 4.50e-51 165
MsG0780038348.01.T01 AT5G03520 43.478 207 110 4 12 216 13 214 1.13e-50 164
MsG0780038348.01.T01 AT5G45130 40.299 201 108 4 16 216 12 200 3.35e-47 154
MsG0780038348.01.T01 AT3G54840 44.767 172 90 2 16 186 35 202 1.86e-46 152
MsG0780038348.01.T01 AT3G54840 47.097 155 81 1 16 169 35 189 3.55e-46 151
MsG0780038348.01.T01 AT3G54840 44.444 171 90 2 17 186 2 168 4.71e-46 150
MsG0780038348.01.T01 AT1G43890 45.588 204 87 6 12 211 11 194 4.89e-46 152
MsG0780038348.01.T01 AT1G43890 45.588 204 87 6 12 211 11 194 4.89e-46 152
MsG0780038348.01.T01 AT1G43890 45.588 204 87 6 12 211 11 194 4.89e-46 152
MsG0780038348.01.T01 AT5G45130 40.201 199 107 4 18 216 22 208 5.23e-46 152
MsG0780038348.01.T01 AT4G19640 36.816 201 115 2 16 216 12 200 2.61e-45 149
MsG0780038348.01.T01 AT5G03530 43.458 214 106 6 8 216 7 210 2.92e-43 145
MsG0780038348.01.T01 AT5G03530 43.458 214 106 6 8 216 7 210 2.92e-43 145
MsG0780038348.01.T01 AT2G44610 42.208 154 89 0 15 168 10 163 1.03e-42 143
MsG0780038348.01.T01 AT4G35860 42.073 164 92 1 55 215 1 164 2.35e-42 141
MsG0780038348.01.T01 AT5G10260 40.909 154 91 0 15 168 10 163 4.80e-42 141
MsG0780038348.01.T01 AT2G22290 40.909 154 91 0 15 168 10 163 5.45e-41 139
MsG0780038348.01.T01 AT4G39890 41.290 155 90 1 15 168 10 164 1.04e-40 138
MsG0780038348.01.T01 AT5G64990 40.260 154 92 0 15 168 8 161 3.81e-39 134
MsG0780038348.01.T01 AT5G03520 41.176 170 93 4 49 216 40 204 9.73e-39 133
MsG0780038348.01.T01 AT5G64990 38.509 161 92 1 15 168 8 168 1.88e-36 127
MsG0780038348.01.T01 AT3G09910 43.182 176 93 4 8 179 7 179 7.04e-36 125
MsG0780038348.01.T01 AT3G09910 43.182 176 93 4 8 179 7 179 7.04e-36 125
MsG0780038348.01.T01 AT3G09910 45.181 166 84 4 8 169 7 169 1.61e-35 124
MsG0780038348.01.T01 AT3G09910 45.181 166 84 4 8 169 7 169 1.61e-35 124
MsG0780038348.01.T01 AT3G09910 45.181 166 84 4 8 169 7 169 1.61e-35 124
MsG0780038348.01.T01 AT1G22740 38.323 167 96 3 14 173 8 174 2.14e-35 124
MsG0780038348.01.T01 AT1G52280 37.209 172 101 3 14 178 8 179 1.80e-34 122
MsG0780038348.01.T01 AT3G18820 37.500 168 98 3 14 174 8 175 2.19e-34 122
MsG0780038348.01.T01 AT2G21880 39.506 162 91 3 14 168 9 170 2.65e-34 122
MsG0780038348.01.T01 AT4G19640 40.769 130 77 0 16 145 12 141 3.13e-34 119
MsG0780038348.01.T01 AT4G19640 37.580 157 97 1 16 172 12 167 7.58e-34 120
MsG0780038348.01.T01 AT3G16100 36.628 172 102 2 14 178 8 179 1.40e-33 120
MsG0780038348.01.T01 AT1G49300 37.037 162 95 3 14 168 8 169 2.51e-31 114
MsG0780038348.01.T01 AT1G49300 37.037 162 95 3 14 168 8 169 2.51e-31 114
MsG0780038348.01.T01 AT4G09720 35.465 172 104 2 14 178 8 179 3.57e-31 113
MsG0780038348.01.T01 AT4G09720 34.463 177 104 2 14 178 8 184 2.58e-30 111
MsG0780038348.01.T01 AT5G39620 36.702 188 111 5 11 191 2 188 3.65e-30 110
MsG0780038348.01.T01 AT5G46025 50.000 106 52 1 76 180 6 111 1.78e-29 106
MsG0780038348.01.T01 AT4G09720 33.333 183 104 2 14 178 8 190 2.99e-29 108
MsG0780038348.01.T01 AT2G21880 37.931 145 83 3 31 168 1 145 3.73e-26 100
MsG0780038348.01.T01 AT2G21880 37.931 145 83 3 31 168 1 145 3.73e-26 100
MsG0780038348.01.T01 AT2G21880 34.568 162 91 4 14 168 9 162 1.77e-24 96.3
MsG0780038348.01.T01 AT2G44690 33.333 180 106 6 14 181 18 195 7.66e-22 89.4
MsG0780038348.01.T01 AT5G55080 28.161 174 114 3 6 175 5 171 1.14e-21 89.4
MsG0780038348.01.T01 AT4G09720 35.915 142 84 2 44 178 4 145 1.34e-21 87.8
MsG0780038348.01.T01 AT4G09720 35.915 142 84 2 44 178 4 145 1.34e-21 87.8
MsG0780038348.01.T01 AT4G09720 35.915 142 84 2 44 178 4 145 1.34e-21 87.8
MsG0780038348.01.T01 AT5G20020 28.571 161 112 3 15 175 14 171 2.85e-20 85.5
MsG0780038348.01.T01 AT5G20010 28.571 161 112 3 15 175 14 171 4.42e-20 85.1
MsG0780038348.01.T01 AT5G55190 28.571 161 112 3 15 175 14 171 4.42e-20 85.1
MsG0780038348.01.T01 AT5G45970 30.233 172 106 5 14 173 6 175 2.14e-18 80.1
MsG0780038348.01.T01 AT5G62880 29.310 174 109 5 14 175 8 179 3.87e-18 79.7
MsG0780038348.01.T01 AT4G35020 29.310 174 109 5 14 175 6 177 4.41e-18 79.3
MsG0780038348.01.T01 AT4G35020 29.310 174 109 5 14 175 6 177 4.41e-18 79.3
MsG0780038348.01.T01 AT4G35020 29.310 174 109 5 14 175 6 177 4.41e-18 79.3
MsG0780038348.01.T01 AT3G48040 28.736 174 110 5 14 175 8 179 8.20e-18 79.0
MsG0780038348.01.T01 AT1G20090 29.310 174 109 5 14 175 5 176 1.42e-17 77.8
MsG0780038348.01.T01 AT3G51300 30.233 172 106 5 16 175 8 177 1.78e-17 77.8
MsG0780038348.01.T01 AT1G75840 28.736 174 110 5 14 175 6 177 2.06e-17 77.4
MsG0780038348.01.T01 AT4G28950 28.492 179 116 5 14 182 6 182 3.15e-17 77.4
MsG0780038348.01.T01 AT4G35950 29.310 174 109 5 14 175 6 177 3.46e-17 77.0
MsG0780038348.01.T01 AT2G17800 29.885 174 108 5 14 175 6 177 3.46e-17 77.0
MsG0780038348.01.T01 AT2G17800 29.885 174 108 5 14 175 6 177 3.46e-17 77.0
MsG0780038348.01.T01 AT5G62880 32.374 139 84 4 14 151 8 137 3.35e-16 73.9
MsG0780038348.01.T01 AT3G48040 31.724 145 89 4 14 157 8 143 1.11e-15 72.4
MsG0780038348.01.T01 AT4G35020 33.333 114 73 3 16 128 8 119 3.56e-14 67.8
MsG0780038348.01.T01 AT4G35020 33.333 114 73 3 16 128 8 119 3.56e-14 67.8
MsG0780038348.01.T01 AT4G08190 46.970 66 32 1 103 168 65 127 4.20e-12 61.6

Find 59 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGAAGGTTTGTTCTTTA+TGG 0.172410 7:-44797802 MsG0780038348.01.T01:CDS
TTTCCCTTGCTACTATTTCT+TGG 0.208857 7:-44797503 MsG0780038348.01.T01:three_prime_UTR
CACAGACAATTCAGCCTTAT+AGG 0.220260 7:+44797680 None:intergenic
GCTTATTATCGTGGTGCTTT+TGG 0.272296 7:-44801053 MsG0780038348.01.T01:CDS
AAAATATTGTTATAGTTTCA+TGG 0.317692 7:+44797371 None:intergenic
CTTAAACTCCGATTCCTATA+AGG 0.343067 7:-44797694 MsG0780038348.01.T01:CDS
AATCGAGTAACCCTGGCTAA+TGG 0.352245 7:-44797657 MsG0780038348.01.T01:CDS
AAGAAGTGAAAGCACAGATC+TGG 0.371445 7:-44801115 MsG0780038348.01.T01:CDS
TCAAATTCAAAAGCAACAAT+TGG 0.379555 7:-44801176 MsG0780038348.01.T01:CDS
GGTGGGAAATAAGTGTGATT+TGG 0.403953 7:-44797871 MsG0780038348.01.T01:CDS
TTGTTGTTTATGATATTAGT+AGG 0.412303 7:-44801025 MsG0780038348.01.T01:CDS
GAACGTTTGAGAGTATTAAG+AGG 0.416406 7:-44800998 MsG0780038348.01.T01:CDS
TTAACTTTGAATTGATACTT+TGG 0.421538 7:-44797577 MsG0780038348.01.T01:three_prime_UTR
CGAACTCGTTTCGCGCGAAC+CGG 0.422196 7:+44801201 None:intergenic
CTCTTCAAAATCGTCTTAAT+CGG 0.423834 7:-44801257 MsG0780038348.01.T01:CDS
ATCGAGTAACCCTGGCTAAT+GGG 0.427815 7:-44797656 MsG0780038348.01.T01:CDS
GTAACCCTGGCTAATGGGTC+TGG 0.448346 7:-44797651 MsG0780038348.01.T01:CDS
TTCGCGCGAACCGGGATAAG+AGG 0.449228 7:+44801210 None:intergenic
TTGAAGAGTGTGTGTGTGGA+TGG 0.450997 7:+44801373 None:intergenic
AAAAGCTCATCAAGAACAAC+AGG 0.454883 7:+44797605 None:intergenic
TGATATTATTGTAAATTTCA+CGG 0.460213 7:+44797727 None:intergenic
CAATTCAGCCTTATAGGAAT+CGG 0.467617 7:+44797686 None:intergenic
TGACAATCTCAAAAGCCGTT+TGG 0.477114 7:+44797751 None:intergenic
AATCGGAGTTTAAGACTTTG+CGG 0.478253 7:+44797703 None:intergenic
TTGATCCAGACCCATTAGCC+AGG 0.478440 7:+44797646 None:intergenic
GAACAACATACAGCTCTTGA+AGG 0.481104 7:+44797552 None:intergenic
TCTTTCAGAATGTATGGATG+AGG 0.489449 7:+44797428 None:intergenic
AAAGCTCTTGCAGAAGAAGA+AGG 0.504187 7:-44797816 MsG0780038348.01.T01:CDS
CGATTCTACTAATGTCCAAA+CGG 0.512036 7:-44797766 MsG0780038348.01.T01:CDS
AGAAGTGAAAGCACAGATCT+GGG 0.521054 7:-44801114 MsG0780038348.01.T01:CDS
GTTACTTCTGCTTATTATCG+TGG 0.527788 7:-44801062 MsG0780038348.01.T01:CDS
CACCGTTGCGAGAATGTTGG+TGG 0.536683 7:-44797889 MsG0780038348.01.T01:CDS
GGGATACTGCTGGTCAAGAA+AGG 0.537036 7:-44801094 MsG0780038348.01.T01:CDS
TCAGAAGAAAACAACGAAGA+AGG 0.540081 7:-44801293 MsG0780038348.01.T01:CDS
GTTTATGATATTAGTAGGAG+AGG 0.553351 7:-44801020 MsG0780038348.01.T01:CDS
ACACAGATGGTGGAGATCGA+TGG 0.558285 7:-44801140 MsG0780038348.01.T01:CDS
TATCAGAGAGGTGAGCATAG+AGG 0.560205 7:-44797844 MsG0780038348.01.T01:CDS
GAAAATCAAACCTCTTATCC+CGG 0.561358 7:-44801220 MsG0780038348.01.T01:CDS
ATGCCAAGAAATAGTAGCAA+GGG 0.566608 7:+44797500 None:intergenic
GCACAGATCTGGGATACTGC+TGG 0.570256 7:-44801104 MsG0780038348.01.T01:CDS
CTTTCAGAATGTATGGATGA+GGG 0.572561 7:+44797429 None:intergenic
GAACTCGTTTCGCGCGAACC+GGG 0.573703 7:+44801202 None:intergenic
GAAGAAAACAACGAAGAAGG+AGG 0.579942 7:-44801290 MsG0780038348.01.T01:CDS
GTCTGTGAATCGAGTAACCC+TGG 0.582672 7:-44797664 MsG0780038348.01.T01:CDS
TGAGTTTCAGACACAGATGG+TGG 0.596530 7:-44801150 MsG0780038348.01.T01:CDS
CGTTTGAGAGTATTAAGAGG+TGG 0.602121 7:-44800995 MsG0780038348.01.T01:CDS
GAATTTGAAGAGTGTGTGTG+TGG 0.602192 7:+44801369 None:intergenic
TTTGTTCTTTATGGAGACAT+CGG 0.603200 7:-44797793 MsG0780038348.01.T01:CDS
CAGAGAGGTGAGCATAGAGG+AGG 0.611372 7:-44797841 MsG0780038348.01.T01:CDS
TTAATCGGCGACTCCGCCGT+AGG 0.613091 7:-44801242 MsG0780038348.01.T01:CDS
TCCCACCAACATTCTCGCAA+CGG 0.615034 7:+44797887 None:intergenic
AGAGAGGTGAGCATAGAGGA+GGG 0.616692 7:-44797840 MsG0780038348.01.T01:CDS
AGTTGAGTTTCAGACACAGA+TGG 0.616806 7:-44801153 MsG0780038348.01.T01:CDS
AATGCCAAGAAATAGTAGCA+AGG 0.618317 7:+44797499 None:intergenic
TGATCCAGACCCATTAGCCA+GGG 0.619067 7:+44797647 None:intergenic
ACCGTTGCGAGAATGTTGGT+GGG 0.661082 7:-44797888 MsG0780038348.01.T01:CDS
ACATTGAGGAGGAACAGAAG+AGG 0.666501 7:+44797467 None:intergenic
TGATTTGGAGAATATCAGAG+AGG 0.677734 7:-44797856 MsG0780038348.01.T01:CDS
TAGCACCGTTGCGAGAATGT+TGG 0.709575 7:-44797892 MsG0780038348.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATCTGATATAAATTAA+GGG + Chr7:44800772-44800791 None:intergenic 10.0%
!! ATATATGATTATTTATTACT+AGG + Chr7:44799230-44799249 None:intergenic 10.0%
!! ATATTAATTAAGGAATTAAT+TGG + Chr7:44799008-44799027 None:intergenic 10.0%
!! ATGTATGTATTATTTAAATA+AGG + Chr7:44800082-44800101 None:intergenic 10.0%
!! TGTATGTATTATTTAAATAA+GGG + Chr7:44800081-44800100 None:intergenic 10.0%
!!! TAATTAATTTTTTATTCAAG+AGG - Chr7:44798532-44798551 MsG0780038348.01.T01:intron 10.0%
!! AAAATATTGTTATAGTTTCA+TGG + Chr7:44801383-44801402 None:intergenic 15.0%
!! ATTACTATAATATGAGATTA+TGG - Chr7:44799093-44799112 MsG0780038348.01.T01:intron 15.0%
!! ATTATTTATTACTAGGTATT+TGG + Chr7:44799223-44799242 None:intergenic 15.0%
!! ATTTATTGTTTATGTAGAAA+TGG - Chr7:44798124-44798143 MsG0780038348.01.T01:intron 15.0%
!! CAAATATCTGATATAAATTA+AGG + Chr7:44800773-44800792 None:intergenic 15.0%
!! TATCCAAATAAAAAAAAGAA+GGG - Chr7:44798309-44798328 MsG0780038348.01.T01:intron 15.0%
!! TGATATTATTGTAAATTTCA+CGG + Chr7:44801027-44801046 None:intergenic 15.0%
!! TTATCCAAATAAAAAAAAGA+AGG - Chr7:44798308-44798327 MsG0780038348.01.T01:intron 15.0%
!!! CTATAATTTTTTTCTCTTTT+GGG - Chr7:44801221-44801240 MsG0780038348.01.T01:CDS 15.0%
!!! CTTAAGTTATACATATATTT+TGG - Chr7:44798656-44798675 MsG0780038348.01.T01:intron 15.0%
!!! TATTTTCATGATAGAAATTA+TGG - Chr7:44801397-44801416 MsG0780038348.01.T01:five_prime_UTR 15.0%
!!! TCTATAATTTTTTTCTCTTT+TGG - Chr7:44801220-44801239 MsG0780038348.01.T01:CDS 15.0%
!!! TTTTCTATTTGATTAGAATT+AGG - Chr7:44799286-44799305 MsG0780038348.01.T01:intron 15.0%
!! AAGAACATATTCCTAAAAAT+AGG + Chr7:44798011-44798030 None:intergenic 20.0%
!! AGGATAAATACATTTGAATT+TGG - Chr7:44799306-44799325 MsG0780038348.01.T01:intron 20.0%
!! AGGTTATTATATTTGGTAAA+CGG - Chr7:44799417-44799436 MsG0780038348.01.T01:intron 20.0%
!! AGTATCAAATAAGTATAACT+TGG + Chr7:44800475-44800494 None:intergenic 20.0%
!! ATAAAAATCTCTCATATCTA+CGG + Chr7:44799524-44799543 None:intergenic 20.0%
!! ATAACATAAGATAAAGCAAA+TGG + Chr7:44799753-44799772 None:intergenic 20.0%
!! ATGTATTATTTAAATAAGGG+AGG + Chr7:44800078-44800097 None:intergenic 20.0%
!! ATGTCAAAGCATATTAATTA+AGG + Chr7:44799018-44799037 None:intergenic 20.0%
!! ATTCCTCTATATTGTAATAT+AGG + Chr7:44800108-44800127 None:intergenic 20.0%
!! CATTATTATATGAGTCAAAT+AGG - Chr7:44799938-44799957 MsG0780038348.01.T01:intron 20.0%
!! TAAATACATTTGAATTTGGA+AGG - Chr7:44799310-44799329 MsG0780038348.01.T01:intron 20.0%
!! TAACATAAGATAAAGCAAAT+GGG + Chr7:44799752-44799771 None:intergenic 20.0%
!! TATATTACAATATAGAGGAA+TGG - Chr7:44800107-44800126 MsG0780038348.01.T01:intron 20.0%
!! TATGCTAAATTTGATTAAGT+AGG + Chr7:44799885-44799904 None:intergenic 20.0%
!! TGAAATTAATTCGACATAAA+AGG + Chr7:44798241-44798260 None:intergenic 20.0%
!! TTAAATAATCAAGCTCTTAT+AGG + Chr7:44799182-44799201 None:intergenic 20.0%
!! TTAACTTTGAATTGATACTT+TGG - Chr7:44801174-44801193 MsG0780038348.01.T01:CDS 20.0%
!! TTCCTCTATATTGTAATATA+GGG + Chr7:44800107-44800126 None:intergenic 20.0%
!!! AAACCCTTCTTTTTTTTATT+TGG + Chr7:44798315-44798334 None:intergenic 20.0%
!!! ACTCAATTGATAACATAAAT+AGG + Chr7:44800220-44800239 None:intergenic 20.0%
!!! AGAGATAAACTTTTAAAACT+TGG - Chr7:44800707-44800726 MsG0780038348.01.T01:intron 20.0%
!!! AGGTGTTTGTTTTTAAAAAA+AGG + Chr7:44800054-44800073 None:intergenic 20.0%
!!! ATTTTTTAGTCCAACAAAAA+AGG + Chr7:44800275-44800294 None:intergenic 20.0%
!!! TCAAATTAATCCTTTTTTGT+TGG - Chr7:44800262-44800281 MsG0780038348.01.T01:intron 20.0%
!!! TTGTTGTTTATGATATTAGT+AGG - Chr7:44797726-44797745 MsG0780038348.01.T01:CDS 20.0%
!!! TTTTTTTTTTTTTTTGCGGA+TGG - Chr7:44798186-44798205 MsG0780038348.01.T01:intron 20.0%
! ACAATGCATTGAAATATGTA+AGG + Chr7:44798426-44798445 None:intergenic 25.0%
! ACACAATTCAGTGTAATTAT+AGG - Chr7:44797920-44797939 MsG0780038348.01.T01:intron 25.0%
! ACCAAAAAAAATACAGAGAT+AGG - Chr7:44799132-44799151 MsG0780038348.01.T01:intron 25.0%
! AGAGGAATGGATATAATTAA+GGG - Chr7:44800120-44800139 MsG0780038348.01.T01:intron 25.0%
! ATAAAAAAAAGAAGGGTTTG+AGG - Chr7:44798316-44798335 MsG0780038348.01.T01:intron 25.0%
! ATAGATGAAGTAAAATGATC+AGG - Chr7:44800344-44800363 MsG0780038348.01.T01:intron 25.0%
! ATGTTCTTGAATCTTACTAT+TGG - Chr7:44798023-44798042 MsG0780038348.01.T01:intron 25.0%
! ATGTTTGGAAGACTAAATTA+AGG + Chr7:44799970-44799989 None:intergenic 25.0%
! ATTATTTAAATAAGGGAGGT+AGG + Chr7:44800074-44800093 None:intergenic 25.0%
! ATTCTACTTATTCACTCTAA+AGG + Chr7:44798383-44798402 None:intergenic 25.0%
! CAATGCATTGAAATATGTAA+GGG + Chr7:44798425-44798444 None:intergenic 25.0%
! CATAAGAACTAAAAACATTG+AGG + Chr7:44801301-44801320 None:intergenic 25.0%
! CCAATTCATTCATATCATAA+AGG + Chr7:44799356-44799375 None:intergenic 25.0%
! CCTTTATGATATGAATGAAT+TGG - Chr7:44799353-44799372 MsG0780038348.01.T01:intron 25.0%
! GATATGAAACTGAAACTTTA+TGG + Chr7:44800800-44800819 None:intergenic 25.0%
! GGACTAAAAAATGAGTATAA+TGG - Chr7:44800283-44800302 MsG0780038348.01.T01:intron 25.0%
! TACTTATTTGATACTTGTGA+CGG - Chr7:44800480-44800499 MsG0780038348.01.T01:intron 25.0%
! TAGAGGAATGGATATAATTA+AGG - Chr7:44800119-44800138 MsG0780038348.01.T01:intron 25.0%
! TCAAATTCAAAAGCAACAAT+TGG - Chr7:44797575-44797594 MsG0780038348.01.T01:three_prime_UTR 25.0%
! TCCTCTATATTGTAATATAG+GGG + Chr7:44800106-44800125 None:intergenic 25.0%
! TGTGCATATATTCTTAACTA+TGG - Chr7:44799700-44799719 MsG0780038348.01.T01:intron 25.0%
!! GTAGATATGAGAGATTTTTA+TGG - Chr7:44799523-44799542 MsG0780038348.01.T01:intron 25.0%
!! TAATATCTTTTGCAAAAGTG+AGG - Chr7:44800148-44800167 MsG0780038348.01.T01:intron 25.0%
!! TATTTTTCTTGTGTTAACAG+GGG + Chr7:44798831-44798850 None:intergenic 25.0%
!! TGTCAGTTAGACATATTTTA+AGG - Chr7:44800179-44800198 MsG0780038348.01.T01:intron 25.0%
!! TTTTCTTCTTTCAGAATGTA+TGG + Chr7:44801332-44801351 None:intergenic 25.0%
!!! ACTTTTTTGAGTTTGATTTG+TGG - Chr7:44797976-44797995 MsG0780038348.01.T01:intron 25.0%
!!! CTATTTTTCTTGTGTTAACA+GGG + Chr7:44798832-44798851 None:intergenic 25.0%
!!! GGACATTTTTCATTTTTGTA+AGG - Chr7:44798677-44798696 MsG0780038348.01.T01:intron 25.0%
!!! GTAAAAAGTGCTTGTAATAA+GGG - Chr7:44798146-44798165 MsG0780038348.01.T01:intron 25.0%
!!! GTTTTTAAAAAAAGGAGTGT+GGG + Chr7:44800046-44800065 None:intergenic 25.0%
!!! TCCTATCTCTGTATTTTTTT+TGG + Chr7:44799136-44799155 None:intergenic 25.0%
!!! TCTATTTTTCTTGTGTTAAC+AGG + Chr7:44798833-44798852 None:intergenic 25.0%
!!! TGTTTTTAAAAAAAGGAGTG+TGG + Chr7:44800047-44800066 None:intergenic 25.0%
AAATGACTAACACACATACA+CGG - Chr7:44797878-44797897 MsG0780038348.01.T01:CDS 30.0%
AAGAACTAAAAACATTGAGG+AGG + Chr7:44801298-44801317 None:intergenic 30.0%
AATGATGACACTTGTATGTT+TGG + Chr7:44799985-44800004 None:intergenic 30.0%
ACCCCTATATTACAATATAG+AGG - Chr7:44800102-44800121 MsG0780038348.01.T01:intron 30.0%
ACTTATTTGATACTTGTGAC+GGG - Chr7:44800481-44800500 MsG0780038348.01.T01:intron 30.0%
AGAGTGAATAAGTAGAATCT+CGG - Chr7:44798385-44798404 MsG0780038348.01.T01:intron 30.0%
ATAGAAGTCACAGAAATGTT+TGG - Chr7:44800388-44800407 MsG0780038348.01.T01:intron 30.0%
ATATGAGATTATGGTGAGAT+AGG - Chr7:44799102-44799121 MsG0780038348.01.T01:intron 30.0%
ATCATAAAGGAAACAAAACC+AGG + Chr7:44799343-44799362 None:intergenic 30.0%
ATCATATTAGCCCTGATTAA+GGG + Chr7:44800311-44800330 None:intergenic 30.0%
ATCGCTTGTACTTACATAAA+TGG - Chr7:44798285-44798304 MsG0780038348.01.T01:intron 30.0%
ATGGAATAACACTTTGTGTA+AGG - Chr7:44798589-44798608 MsG0780038348.01.T01:intron 30.0%
CGTTATTAGTAAAACGTCAA+AGG + Chr7:44800739-44800758 None:intergenic 30.0%
CTCTTCAAAATCGTCTTAAT+CGG - Chr7:44797494-44797513 MsG0780038348.01.T01:three_prime_UTR 30.0%
GACAATGCATTATTATTGTG+AGG + Chr7:44798863-44798882 None:intergenic 30.0%
GAGGAATGGATATAATTAAG+GGG - Chr7:44800121-44800140 MsG0780038348.01.T01:intron 30.0%
GTTTATGATATTAGTAGGAG+AGG - Chr7:44797731-44797750 MsG0780038348.01.T01:CDS 30.0%
TGTATTGTGAATTGTGAAGA+TGG - Chr7:44799667-44799686 MsG0780038348.01.T01:intron 30.0%
TTTGTTCTTTATGGAGACAT+CGG - Chr7:44800958-44800977 MsG0780038348.01.T01:intron 30.0%
! AGAAGAAGGTTTGTTCTTTA+TGG - Chr7:44800949-44800968 MsG0780038348.01.T01:intron 30.0%
! AGCAATCCTAATTTTTCTCT+CGG - Chr7:44798783-44798802 MsG0780038348.01.T01:intron 30.0%
! ATTATAGGTGTTGTATAGTG+TGG - Chr7:44797935-44797954 MsG0780038348.01.T01:intron 30.0%
! ATTTTTCTTGTGTTAACAGG+GGG + Chr7:44798830-44798849 None:intergenic 30.0%
! CTTTTATTCAAGAGTAGACT+AGG - Chr7:44798488-44798507 MsG0780038348.01.T01:intron 30.0%
! GTGAGTTTTCTTTTCCTAAT+CGG + Chr7:44798219-44798238 None:intergenic 30.0%
! TGAGTTTTCTTTTCCTAATC+GGG + Chr7:44798218-44798237 None:intergenic 30.0%
! TGCTGTATCATTTAGAATGT+TGG - Chr7:44798897-44798916 MsG0780038348.01.T01:intron 30.0%
! TTTTTATCCGACACTTTACT+CGG - Chr7:44799773-44799792 MsG0780038348.01.T01:intron 30.0%
!! GGACTAATTTGCCTATTTTT+AGG - Chr7:44797997-44798016 MsG0780038348.01.T01:intron 30.0%
!! GGTAAAAAGTGCTTGTAATA+AGG - Chr7:44798145-44798164 MsG0780038348.01.T01:intron 30.0%
!! TAAGAGGTTTGATTTTCCTA+CGG + Chr7:44797528-44797547 None:intergenic 30.0%
!!! ACATTGTTGTGGTTTGTTTT+TGG + Chr7:44797439-44797458 None:intergenic 30.0%
AAAAGCTCATCAAGAACAAC+AGG + Chr7:44801149-44801168 None:intergenic 35.0%
AAATCATTAAAAGGGACGCT+AGG - Chr7:44799397-44799416 MsG0780038348.01.T01:intron 35.0%
AATGCCAAGAAATAGTAGCA+AGG + Chr7:44801255-44801274 None:intergenic 35.0%
AATTCACAATACACTCAGTC+AGG + Chr7:44799660-44799679 None:intergenic 35.0%
AATTTGGAAGGATATCTACC+TGG - Chr7:44799322-44799341 MsG0780038348.01.T01:intron 35.0%
AGGAATGCTAATTAAGCAAC+AGG + Chr7:44799497-44799516 None:intergenic 35.0%
AGTGAATAAGTAGAATCTCG+GGG - Chr7:44798387-44798406 MsG0780038348.01.T01:intron 35.0%
AGTGGCCTGAAATCATTAAA+AGG - Chr7:44799388-44799407 MsG0780038348.01.T01:intron 35.0%
ATAACACTTTGTGTAAGGTG+TGG - Chr7:44798594-44798613 MsG0780038348.01.T01:intron 35.0%
ATGCCAAGAAATAGTAGCAA+GGG + Chr7:44801254-44801273 None:intergenic 35.0%
CATCATATTAGCCCTGATTA+AGG + Chr7:44800312-44800331 None:intergenic 35.0%
CGATTCTACTAATGTCCAAA+CGG - Chr7:44800985-44801004 MsG0780038348.01.T01:CDS 35.0%
CTCAACTGTTTGATGAAGAT+TGG + Chr7:44800606-44800625 None:intergenic 35.0%
CTTAAACTCCGATTCCTATA+AGG - Chr7:44801057-44801076 MsG0780038348.01.T01:CDS 35.0%
CTTAATCAGGGCTAATATGA+TGG - Chr7:44800310-44800329 MsG0780038348.01.T01:intron 35.0%
CTTTCAGAATGTATGGATGA+GGG + Chr7:44801325-44801344 None:intergenic 35.0%
GAAAATCAAACCTCTTATCC+CGG - Chr7:44797531-44797550 MsG0780038348.01.T01:three_prime_UTR 35.0%
GAATGAATTGGAGTTACTTC+AGG - Chr7:44799365-44799384 MsG0780038348.01.T01:intron 35.0%
GAATGGATATAATTAAGGGG+AGG - Chr7:44800124-44800143 MsG0780038348.01.T01:intron 35.0%
GAGTGAATAAGTAGAATCTC+GGG - Chr7:44798386-44798405 MsG0780038348.01.T01:intron 35.0%
GCATACATCTAGCAAAAACA+GGG + Chr7:44799451-44799470 None:intergenic 35.0%
GGACGCTAGGTTATTATATT+TGG - Chr7:44799410-44799429 MsG0780038348.01.T01:intron 35.0%
GTGGCCTGAAATCATTAAAA+GGG - Chr7:44799389-44799408 MsG0780038348.01.T01:intron 35.0%
GTTACTTCTGCTTATTATCG+TGG - Chr7:44797689-44797708 MsG0780038348.01.T01:CDS 35.0%
TAAGTATAACTTGGTACTCG+AGG + Chr7:44800466-44800485 None:intergenic 35.0%
TACAACCAAAGAGGTTAAGA+GGG - Chr7:44798561-44798580 MsG0780038348.01.T01:intron 35.0%
TCAGAAGAAAACAACGAAGA+AGG - Chr7:44797458-44797477 MsG0780038348.01.T01:three_prime_UTR 35.0%
TCTTTCAGAATGTATGGATG+AGG + Chr7:44801326-44801345 None:intergenic 35.0%
TGCATACATCTAGCAAAAAC+AGG + Chr7:44799452-44799471 None:intergenic 35.0%
TGGATAATCTGCAACAATCA+CGG - Chr7:44800507-44800526 MsG0780038348.01.T01:intron 35.0%
TTACAACCAAAGAGGTTAAG+AGG - Chr7:44798560-44798579 MsG0780038348.01.T01:intron 35.0%
! AATCGGAGTTTAAGACTTTG+CGG + Chr7:44801051-44801070 None:intergenic 35.0%
! CAATTCAGCCTTATAGGAAT+CGG + Chr7:44801068-44801087 None:intergenic 35.0%
! GTTTTCTTCTGACATTGTTG+TGG + Chr7:44797450-44797469 None:intergenic 35.0%
! TATAATGGAGCCCTTAATCA+GGG - Chr7:44800298-44800317 MsG0780038348.01.T01:intron 35.0%
! TGATTTGGAGAATATCAGAG+AGG - Chr7:44800895-44800914 MsG0780038348.01.T01:intron 35.0%
! TTTCCCTTGCTACTATTTCT+TGG - Chr7:44801248-44801267 MsG0780038348.01.T01:CDS 35.0%
!! AACAGGTGTTGATGATCAAA+GGG + Chr7:44799480-44799499 None:intergenic 35.0%
!! CGATTAAGACGATTTTGAAG+AGG + Chr7:44797496-44797515 None:intergenic 35.0%
!! GAACGTTTGAGAGTATTAAG+AGG - Chr7:44797753-44797772 MsG0780038348.01.T01:CDS 35.0%
AAAGCTCTTGCAGAAGAAGA+AGG - Chr7:44800935-44800954 MsG0780038348.01.T01:intron 40.0%
AATTGGAGTTACTTCAGGAG+TGG - Chr7:44799370-44799389 MsG0780038348.01.T01:intron 40.0%
ACAACCAAAGAGGTTAAGAG+GGG - Chr7:44798562-44798581 MsG0780038348.01.T01:intron 40.0%
AGAGGTTAAGAGGGGATATA+TGG - Chr7:44798570-44798589 MsG0780038348.01.T01:intron 40.0%
AGTTGAGTTTCAGACACAGA+TGG - Chr7:44797598-44797617 MsG0780038348.01.T01:exon 40.0%
ATATCCCCTCTTAACCTCTT+TGG + Chr7:44798569-44798588 None:intergenic 40.0%
ATCCAGATCAGCACACTATA+TGG + Chr7:44799266-44799285 None:intergenic 40.0%
GAACAACATACAGCTCTTGA+AGG + Chr7:44801202-44801221 None:intergenic 40.0%
GAAGAAAACAACGAAGAAGG+AGG - Chr7:44797461-44797480 MsG0780038348.01.T01:three_prime_UTR 40.0%
GATCAGGCTTTGCATTATTG+AGG - Chr7:44800360-44800379 MsG0780038348.01.T01:intron 40.0%
GGTGGGAAATAAGTGTGATT+TGG - Chr7:44800880-44800899 MsG0780038348.01.T01:intron 40.0%
GTGCTTGTAATAAGGGATTG+CGG - Chr7:44798153-44798172 MsG0780038348.01.T01:intron 40.0%
GTTCGACCGAGAGAAAAATT+AGG + Chr7:44798792-44798811 None:intergenic 40.0%
TGACAATCTCAAAAGCCGTT+TGG + Chr7:44801003-44801022 None:intergenic 40.0%
! AAGAAGTGAAAGCACAGATC+TGG - Chr7:44797636-44797655 MsG0780038348.01.T01:CDS 40.0%
! AGAAGTGAAAGCACAGATCT+GGG - Chr7:44797637-44797656 MsG0780038348.01.T01:CDS 40.0%
! AGGTGCTTTTACAACCAAAG+AGG - Chr7:44798552-44798571 MsG0780038348.01.T01:intron 40.0%
! CACAGACAATTCAGCCTTAT+AGG + Chr7:44801074-44801093 None:intergenic 40.0%
! GAATTTGAAGAGTGTGTGTG+TGG + Chr7:44797385-44797404 None:intergenic 40.0%
! GCGTCCCTTTTAATGATTTC+AGG + Chr7:44799396-44799415 None:intergenic 40.0%
! GCTTATTATCGTGGTGCTTT+TGG - Chr7:44797698-44797717 MsG0780038348.01.T01:CDS 40.0%
! GTATAATGGAGCCCTTAATC+AGG - Chr7:44800297-44800316 MsG0780038348.01.T01:intron 40.0%
! TTCCATATAGTGTGCTGATC+TGG - Chr7:44799261-44799280 MsG0780038348.01.T01:intron 40.0%
! TTGATACTTGTGACGGGAAA+TGG - Chr7:44800487-44800506 MsG0780038348.01.T01:intron 40.0%
!! CAACAGGTGTTGATGATCAA+AGG + Chr7:44799481-44799500 None:intergenic 40.0%
!! CGTTTGAGAGTATTAAGAGG+TGG - Chr7:44797756-44797775 MsG0780038348.01.T01:CDS 40.0%
!! GGTTTGAGGCGTGTATTTTT+CGG - Chr7:44798330-44798349 MsG0780038348.01.T01:intron 40.0%
AATCGAGTAACCCTGGCTAA+TGG - Chr7:44801094-44801113 MsG0780038348.01.T01:CDS 45.0%
ACATTGAGGAGGAACAGAAG+AGG + Chr7:44801287-44801306 None:intergenic 45.0%
ACTTTCTTTCGCACAGACAC+CGG - Chr7:44797816-44797835 MsG0780038348.01.T01:CDS 45.0%
AGCTGATTATGTCTGCTGCT+TGG - Chr7:44800664-44800683 MsG0780038348.01.T01:intron 45.0%
ATCGAGTAACCCTGGCTAAT+GGG - Chr7:44801095-44801114 MsG0780038348.01.T01:CDS 45.0%
ATGTGCACTGAGACGAGATT+GGG - Chr7:44798462-44798481 MsG0780038348.01.T01:intron 45.0%
GCAATCTCCGAGTAAAGTGT+CGG + Chr7:44799783-44799802 None:intergenic 45.0%
TATCAGAGAGGTGAGCATAG+AGG - Chr7:44800907-44800926 MsG0780038348.01.T01:intron 45.0%
TATGTGCACTGAGACGAGAT+TGG - Chr7:44798461-44798480 MsG0780038348.01.T01:intron 45.0%
TCAGTCAGGAACCAGTCATA+TGG + Chr7:44799646-44799665 None:intergenic 45.0%
TGAGTTTCAGACACAGATGG+TGG - Chr7:44797601-44797620 MsG0780038348.01.T01:exon 45.0%
TGTTGCTACCACCATATGAC+TGG - Chr7:44799632-44799651 MsG0780038348.01.T01:intron 45.0%
! CAAGAATTGTTGTTCCACGC+AGG + Chr7:44798763-44798782 None:intergenic 45.0%
! GCTGATTATGTCTGCTGCTT+GGG - Chr7:44800665-44800684 MsG0780038348.01.T01:intron 45.0%
! TTGAAGAGTGTGTGTGTGGA+TGG + Chr7:44797381-44797400 None:intergenic 45.0%
! TTTTTCTCTCGGTCGAACTC+AGG - Chr7:44798794-44798813 MsG0780038348.01.T01:intron 45.0%
!! GAGGTTTGATTTTCCTACGG+CGG + Chr7:44797525-44797544 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTTTTTTG+CGG - Chr7:44798182-44798201 MsG0780038348.01.T01:intron 5.0%
ACCGTTGCGAGAATGTTGGT+GGG - Chr7:44800863-44800882 MsG0780038348.01.T01:intron 50.0%
ACGACACTGACACACAGACA+CGG - Chr7:44797841-44797860 MsG0780038348.01.T01:CDS 50.0%
AGAGAGGTGAGCATAGAGGA+GGG - Chr7:44800911-44800930 MsG0780038348.01.T01:intron 50.0%
AGTGACTGCAGGCTAAGTCT+CGG - Chr7:44800638-44800657 MsG0780038348.01.T01:intron 50.0%
CAATCACGGATCTCGACTGT+TGG - Chr7:44800521-44800540 MsG0780038348.01.T01:intron 50.0%
CGGATGGAGAAAACCCGATT+AGG - Chr7:44798202-44798221 MsG0780038348.01.T01:intron 50.0%
GGGATACTGCTGGTCAAGAA+AGG - Chr7:44797657-44797676 MsG0780038348.01.T01:CDS 50.0%
GTCAGGAACCAGTCATATGG+TGG + Chr7:44799643-44799662 None:intergenic 50.0%
GTCTGTGAATCGAGTAACCC+TGG - Chr7:44801087-44801106 MsG0780038348.01.T01:CDS 50.0%
TAGCACCGTTGCGAGAATGT+TGG - Chr7:44800859-44800878 MsG0780038348.01.T01:intron 50.0%
TCCCACCAACATTCTCGCAA+CGG + Chr7:44800867-44800886 None:intergenic 50.0%
TCTCTCATATCTACGGTCGC+AGG + Chr7:44799517-44799536 None:intergenic 50.0%
TCTGCTGATGTAGTGACTGC+AGG - Chr7:44800627-44800646 MsG0780038348.01.T01:intron 50.0%
TGATCCAGACCCATTAGCCA+GGG + Chr7:44801107-44801126 None:intergenic 50.0%
TGTGCACTGAGACGAGATTG+GGG - Chr7:44798463-44798482 MsG0780038348.01.T01:intron 50.0%
TTCCACGCAGGAATCGAGTT+CGG + Chr7:44798751-44798770 None:intergenic 50.0%
TTGATCCAGACCCATTAGCC+AGG + Chr7:44801108-44801127 None:intergenic 50.0%
!! ACACAGATGGTGGAGATCGA+TGG - Chr7:44797611-44797630 MsG0780038348.01.T01:exon 50.0%
CACCGTTGCGAGAATGTTGG+TGG - Chr7:44800862-44800881 MsG0780038348.01.T01:intron 55.0%
CAGAGAGGTGAGCATAGAGG+AGG - Chr7:44800910-44800929 MsG0780038348.01.T01:intron 55.0%
CGGATCTCGACTGTTGGATG+AGG - Chr7:44800527-44800546 MsG0780038348.01.T01:intron 55.0%
CTGTGTGTCAGTGTCGTGTC+CGG + Chr7:44797838-44797857 None:intergenic 55.0%
! GCACAGATCTGGGATACTGC+TGG - Chr7:44797647-44797666 MsG0780038348.01.T01:CDS 55.0%
! GTAACCCTGGCTAATGGGTC+TGG - Chr7:44801100-44801119 MsG0780038348.01.T01:CDS 55.0%
AGCCGAACTCGATTCCTGCG+TGG - Chr7:44798746-44798765 MsG0780038348.01.T01:intron 60.0%
CGAACTCGTTTCGCGCGAAC+CGG + Chr7:44797553-44797572 None:intergenic 60.0%
CGGTCGAACTCAGGATGAGC+AGG - Chr7:44798803-44798822 MsG0780038348.01.T01:intron 60.0%
GAACTCGTTTCGCGCGAACC+GGG + Chr7:44797552-44797571 None:intergenic 60.0%
TTAATCGGCGACTCCGCCGT+AGG - Chr7:44797509-44797528 MsG0780038348.01.T01:three_prime_UTR 60.0%
TTCGCGCGAACCGGGATAAG+AGG + Chr7:44797544-44797563 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 44797344 44801429 44797344 ID=MsG0780038348.01;Name=MsG0780038348.01
Chr7 mRNA 44797344 44801429 44797344 ID=MsG0780038348.01.T01;Parent=MsG0780038348.01;Name=MsG0780038348.01.T01;_AED=0.39;_eAED=0.39;_QI=111|1|1|1|1|1|2|270|216
Chr7 exon 44797344 44797924 44797344 ID=MsG0780038348.01.T01:exon:4946;Parent=MsG0780038348.01.T01
Chr7 exon 44800979 44801429 44800979 ID=MsG0780038348.01.T01:exon:4945;Parent=MsG0780038348.01.T01
Chr7 five_prime_UTR 44801319 44801429 44801319 ID=MsG0780038348.01.T01:five_prime_utr;Parent=MsG0780038348.01.T01
Chr7 CDS 44800979 44801318 44800979 ID=MsG0780038348.01.T01:cds;Parent=MsG0780038348.01.T01
Chr7 CDS 44797614 44797924 44797614 ID=MsG0780038348.01.T01:cds;Parent=MsG0780038348.01.T01
Chr7 three_prime_UTR 44797344 44797613 44797344 ID=MsG0780038348.01.T01:three_prime_utr;Parent=MsG0780038348.01.T01
Gene Sequence

>MsG0780038348.01.T01

ATGTCAGAAGAAAACAACGAAGAAGGAGGAGAAGAGTACCTCTTCAAAATCGTCTTAATCGGCGACTCCGCCGTAGGAAAATCAAACCTCTTATCCCGGTTCGCGCGAAACGAGTTCGATTCAAATTCAAAAGCAACAATTGGAGTTGAGTTTCAGACACAGATGGTGGAGATCGATGGAAAAGAAGTGAAAGCACAGATCTGGGATACTGCTGGTCAAGAAAGGTTTAGAGCTGTTACTTCTGCTTATTATCGTGGTGCTTTTGGTGCTCTTGTTGTTTATGATATTAGTAGGAGAGGAACGTTTGAGAGTATTAAGAGGTGGCTTGATGAACTCACTACTCAAAATGATAGCACCGTTGCGAGAATGTTGGTGGGAAATAAGTGTGATTTGGAGAATATCAGAGAGGTGAGCATAGAGGAGGGCAAAGCTCTTGCAGAAGAAGAAGGTTTGTTCTTTATGGAGACATCGGCACTCGATTCTACTAATGTCCAAACGGCTTTTGAGATTGTCATCCGTGAAATTTACAATAATATCAGCCGCAAAGTCTTAAACTCCGATTCCTATAAGGCTGAATTGTCTGTGAATCGAGTAACCCTGGCTAATGGGTCTGGATCAAAGAAAAGTATGTTCAGTTCCTGTTGTTCTTGA

Protein sequence

>MsG0780038348.01.T01

MSEENNEEGGEEYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQMVEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAFGALVVYDISRRGTFESIKRWLDELTTQNDSTVARMLVGNKCDLENIREVSIEEGKALAEEEGLFFMETSALDSTNVQTAFEIVIREIYNNISRKVLNSDSYKAELSVNRVTLANGSGSKKSMFSSCCS*