AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780037119.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780037119.01.T01 MTR_7g028600 85.714 161 0 1 6 166 143 280 6.16e-92 269
MsG0780037119.01.T01 MTR_1567s0010 37.383 107 61 3 12 116 315 417 4.76e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780037119.01.T01 AT5G14100 68.323 161 28 1 6 166 141 278 3.02e-57 181

Find 42 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCCCCGATTTATTAATAT+TGG 0.208491 7:-20048458 MsG0780037119.01.T01:CDS
AAAAGGGTAATGATCAATTA+AGG 0.239803 7:-20048943 MsG0780037119.01.T01:CDS
GTGAATCGCTACTTTCCTTA+TGG 0.271645 7:-20046177 MsG0780037119.01.T01:CDS
GTACTTGATGAAGTCACTTT+TGG 0.293522 7:-20048977 MsG0780037119.01.T01:CDS
GGCTCCAGAGGGCTATTAAC+TGG 0.307088 7:-20048904 MsG0780037119.01.T01:CDS
TTCATCCAATATTAATAAAT+CGG 0.325127 7:+20048453 None:intergenic
TCATCCAATATTAATAAATC+GGG 0.394622 7:+20048454 None:intergenic
ATATTGGATGAACCACTTGC+CGG 0.396932 7:-20048442 MsG0780037119.01.T01:CDS
GCAATAAATATAAATTATAA+TGG 0.403241 7:+20046063 None:intergenic
TTGCAGTTGTTTACCAAGTC+CGG 0.405056 7:+20048423 None:intergenic
CAAGTCTAGTTGATCAATCA+TGG 0.408347 7:-20046125 MsG0780037119.01.T01:CDS
TGGATTAAGTGGGATATCAT+TGG 0.410784 7:-20048705 MsG0780037119.01.T01:CDS
TAACTATAGGTTGGATTAAG+TGG 0.420478 7:-20048716 MsG0780037119.01.T01:intron
TCAATCATGGAGGATGGAAA+TGG 0.477083 7:-20046112 MsG0780037119.01.T01:CDS
AAAGGGTAATGATCAATTAA+GGG 0.477968 7:-20048942 MsG0780037119.01.T01:CDS
TTACAAACGTCGCCTTGCCT+TGG 0.493843 7:-20048654 MsG0780037119.01.T01:CDS
GATGAACCACTTGCCGGACT+TGG 0.497556 7:-20048436 MsG0780037119.01.T01:intron
CAATCATGGAGGATGGAAAT+GGG 0.499858 7:-20046111 MsG0780037119.01.T01:CDS
TTAAGGGAGAATCTTGCTCT+AGG 0.508166 7:-20048926 MsG0780037119.01.T01:CDS
ACACATTGGTGTTGCAACCT+AGG 0.516896 7:-20049018 None:intergenic
ACTTACTAATTGTATTGCCA+AGG 0.520140 7:+20048637 None:intergenic
TGCACATACGAAGCTCCATA+AGG 0.523909 7:+20046162 None:intergenic
TTTGGGTGGCCAAGACAAAA+GGG 0.552958 7:-20048959 MsG0780037119.01.T01:CDS
CTACCCAGTTAATAGCCCTC+TGG 0.553550 7:+20048900 None:intergenic
AATGGGTGGCAATCTTAGAC+AGG 0.556581 7:-20046094 MsG0780037119.01.T01:CDS
TTGTTGTCAGCCATGACTTG+AGG 0.565195 7:-20047319 MsG0780037119.01.T01:CDS
AACTATAGGTTGGATTAAGT+GGG 0.566656 7:-20048715 MsG0780037119.01.T01:intron
ATCTTGCTCTAGGGCTCCAG+AGG 0.568170 7:-20048916 MsG0780037119.01.T01:CDS
AGTTGATCAATCATGGAGGA+TGG 0.573893 7:-20046118 MsG0780037119.01.T01:CDS
ATTGAAACAACCTCAAGTCA+TGG 0.582660 7:+20047309 None:intergenic
CTAATTGTATTGCCAAGGCA+AGG 0.596068 7:+20048642 None:intergenic
GCTCCAGAGGGCTATTAACT+GGG 0.601563 7:-20048903 MsG0780037119.01.T01:intron
TAAGGGAGAATCTTGCTCTA+GGG 0.602429 7:-20048925 MsG0780037119.01.T01:CDS
TAACCGCCACTGAGAGAGTG+AGG 0.633284 7:+20048674 None:intergenic
TGTTTACCAAGTCCGGCAAG+TGG 0.637729 7:+20048430 None:intergenic
CATCCAATATTAATAAATCG+GGG 0.639918 7:+20048455 None:intergenic
GTATCAGCAACAAAATACCT+AGG 0.658311 7:+20049001 None:intergenic
AATCCTCACTCTCTCAGTGG+CGG 0.673252 7:-20048677 MsG0780037119.01.T01:CDS
TCATGGAGGATGGAAATGGG+TGG 0.688185 7:-20046108 MsG0780037119.01.T01:CDS
TCTTGCTCTAGGGCTCCAGA+GGG 0.699634 7:-20048915 MsG0780037119.01.T01:CDS
AAGAATCCTCACTCTCTCAG+TGG 0.707736 7:-20048680 MsG0780037119.01.T01:CDS
GTCTAGTTGATCAATCATGG+AGG 0.740320 7:-20046122 MsG0780037119.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+GGG + Chr7:20046261-20046242 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG + Chr7:20046260-20046241 None:intergenic 0.0%
!!! ATAAAAAATCACAAATTTTA+AGG + Chr7:20048028-20048047 None:intergenic 10.0%
!!! TGATTTATTTAATTTTCTAA+CGG + Chr7:20048367-20048386 None:intergenic 10.0%
!!! TTTAATTGTAAAAGAAATTT+TGG - Chr7:20048864-20048883 MsG0780037119.01.T01:intron 10.0%
!! ATGTGAATATAATTTCATTT+AGG - Chr7:20047605-20047624 MsG0780037119.01.T01:intron 15.0%
!! TTCATCCAATATTAATAAAT+CGG + Chr7:20046640-20046659 None:intergenic 15.0%
!!! ATTTCTTTTACAATTAAAAG+AGG + Chr7:20048862-20048881 None:intergenic 15.0%
!!! ATTTTTTTCTTCCTATATAT+GGG + Chr7:20047881-20047900 None:intergenic 15.0%
!!! TGTGATTTTTTATTATCATT+AGG - Chr7:20048035-20048054 MsG0780037119.01.T01:intron 15.0%
!! AAAGTTAGAATCAATGTATA+AGG + Chr7:20048808-20048827 None:intergenic 20.0%
!! ATAACTACTGTAGAATTATA+TGG - Chr7:20048282-20048301 MsG0780037119.01.T01:intron 20.0%
!! TAAAAGAAATATACACAGAT+AGG + Chr7:20047150-20047169 None:intergenic 20.0%
!! TCATCCAATATTAATAAATC+GGG + Chr7:20046639-20046658 None:intergenic 20.0%
!!! ACAAGTTGAATACATTTTAA+AGG + Chr7:20046760-20046779 None:intergenic 20.0%
!!! CAAGTTGAATACATTTTAAA+GGG + Chr7:20046759-20046778 None:intergenic 20.0%
!!! GATTTTTTTCTTCCTATATA+TGG + Chr7:20047882-20047901 None:intergenic 20.0%
!!! GCTTTATTATTTTACAAAAG+AGG - Chr7:20047430-20047449 MsG0780037119.01.T01:intron 20.0%
!!! TATCAATAGCATTTTTATCT+TGG - Chr7:20046983-20047002 MsG0780037119.01.T01:intron 20.0%
!!! TTGTTTATTTTGTGAAATTG+TGG - Chr7:20047178-20047197 MsG0780037119.01.T01:intron 20.0%
! AAAAGGGTAATGATCAATTA+AGG - Chr7:20046147-20046166 MsG0780037119.01.T01:CDS 25.0%
! AAAGGGTAATGATCAATTAA+GGG - Chr7:20046148-20046167 MsG0780037119.01.T01:CDS 25.0%
! AATAATAAAGCCAAAGCAAA+AGG + Chr7:20047421-20047440 None:intergenic 25.0%
! AATCCCCGATTTATTAATAT+TGG - Chr7:20046632-20046651 MsG0780037119.01.T01:intron 25.0%
! ATGATTTCATAGGATAGAAA+AGG + Chr7:20047237-20047256 None:intergenic 25.0%
! ATTACATAACAATCCAAATG+TGG + Chr7:20046945-20046964 None:intergenic 25.0%
! CATATGTTGCCTATATAAAT+GGG + Chr7:20047953-20047972 None:intergenic 25.0%
! CATCCAATATTAATAAATCG+GGG + Chr7:20046638-20046657 None:intergenic 25.0%
! CATTTGTTTGTCATAACTAT+AGG - Chr7:20046361-20046380 MsG0780037119.01.T01:intron 25.0%
! CTATAGTTATGACAAACAAA+TGG + Chr7:20046363-20046382 None:intergenic 25.0%
! GAATTTCTAATTGAAGTGAA+TGG + Chr7:20048155-20048174 None:intergenic 25.0%
! GTCATCTATAAGAAAAGATT+TGG + Chr7:20048079-20048098 None:intergenic 25.0%
! TAAAAGAGGAATTGAGTAAT+GGG + Chr7:20048848-20048867 None:intergenic 25.0%
! TCATATGTTGCCTATATAAA+TGG + Chr7:20047954-20047973 None:intergenic 25.0%
! TTAAAAGAGGAATTGAGTAA+TGG + Chr7:20048849-20048868 None:intergenic 25.0%
! TTACATAACAATCCAAATGT+GGG + Chr7:20046944-20046963 None:intergenic 25.0%
!! CAGAATTAAATAAAAAGCAC+AGG + Chr7:20046693-20046712 None:intergenic 25.0%
!! GTTTTTACACCCATTTATAT+AGG - Chr7:20047941-20047960 MsG0780037119.01.T01:intron 25.0%
!! TTTTCTATCCTATGAAATCA+TGG - Chr7:20047236-20047255 MsG0780037119.01.T01:intron 25.0%
!! TTTTGCCTATAAATAGGAAA+AGG - Chr7:20048391-20048410 MsG0780037119.01.T01:intron 25.0%
AAATTAATCCAATTGTCGCT+TGG + Chr7:20046586-20046605 None:intergenic 30.0%
AACATCAAGTATTTCCAAGA+GGG - Chr7:20047523-20047542 MsG0780037119.01.T01:intron 30.0%
ACCAAGACCATATAAAATTC+TGG - Chr7:20047902-20047921 MsG0780037119.01.T01:intron 30.0%
ACTTACTAATTGTATTGCCA+AGG + Chr7:20046456-20046475 None:intergenic 30.0%
AGAGTTGTCTTCAATATCTT+GGG - Chr7:20048447-20048466 MsG0780037119.01.T01:CDS 30.0%
ATACAAAATGAAAGAGAAGC+AGG + Chr7:20046883-20046902 None:intergenic 30.0%
ATATGAACTCAAAACAGCTA+AGG - Chr7:20048722-20048741 MsG0780037119.01.T01:intron 30.0%
CAGCAATTCATTCAACAATT+TGG - Chr7:20048666-20048685 MsG0780037119.01.T01:CDS 30.0%
CATATAAAATTCTGGCATAG+TGG - Chr7:20047910-20047929 MsG0780037119.01.T01:intron 30.0%
CATTGAACTAAATTAACCTC+TGG - Chr7:20046726-20046745 MsG0780037119.01.T01:intron 30.0%
CTAAACTATTACAGCTGAAT+GGG + Chr7:20047326-20047345 None:intergenic 30.0%
CTAAGTAAACCACTAACAAA+GGG + Chr7:20048321-20048340 None:intergenic 30.0%
TAACATCAAGTATTTCCAAG+AGG - Chr7:20047522-20047541 MsG0780037119.01.T01:intron 30.0%
TACAAAATGAAAGAGAAGCA+GGG + Chr7:20046882-20046901 None:intergenic 30.0%
TACATAACAATCCAAATGTG+GGG + Chr7:20046943-20046962 None:intergenic 30.0%
TAGAGTTGTCTTCAATATCT+TGG - Chr7:20048446-20048465 MsG0780037119.01.T01:CDS 30.0%
TATGAACTCAAAACAGCTAA+GGG - Chr7:20048723-20048742 MsG0780037119.01.T01:intron 30.0%
TATGGGTGTTAGATAAAAAG+TGG + Chr7:20046815-20046834 None:intergenic 30.0%
TCTTCTACAAATTTCCTTGA+GGG - Chr7:20047380-20047399 MsG0780037119.01.T01:CDS 30.0%
TGTTTGTCATAACTATAGGT+TGG - Chr7:20046365-20046384 MsG0780037119.01.T01:intron 30.0%
TTCTTATAGATGACATCGAA+GGG - Chr7:20048085-20048104 MsG0780037119.01.T01:intron 30.0%
TTCTTCTACAAATTTCCTTG+AGG - Chr7:20047379-20047398 MsG0780037119.01.T01:CDS 30.0%
TTGTTGAATGAATTGCTGAT+TGG + Chr7:20048664-20048683 None:intergenic 30.0%
TTTATACTTGTTCACAAGTG+AGG + Chr7:20047091-20047110 None:intergenic 30.0%
TTTCTTATAGATGACATCGA+AGG - Chr7:20048084-20048103 MsG0780037119.01.T01:intron 30.0%
! AACTATAGGTTGGATTAAGT+GGG - Chr7:20046375-20046394 MsG0780037119.01.T01:intron 30.0%
! ATGACATACAGTTGATGTTA+TGG + Chr7:20046833-20046852 None:intergenic 30.0%
! CAACTCCTTTTCCTATTTAT+AGG + Chr7:20048399-20048418 None:intergenic 30.0%
! CACTATGCCAGAATTTTATA+TGG + Chr7:20047912-20047931 None:intergenic 30.0%
! CAGACATTTTGCCTATAAAT+AGG - Chr7:20048385-20048404 MsG0780037119.01.T01:intron 30.0%
! CTGAAATTTCCTGATGTTTT+AGG - Chr7:20047065-20047084 MsG0780037119.01.T01:intron 30.0%
! TAACTATAGGTTGGATTAAG+TGG - Chr7:20046374-20046393 MsG0780037119.01.T01:intron 30.0%
! TGACATACAGTTGATGTTAT+GGG + Chr7:20046832-20046851 None:intergenic 30.0%
! TTTTTACATGTGTTGTAGCT+AGG - Chr7:20048766-20048785 MsG0780037119.01.T01:intron 30.0%
!!! TACTTGATGAAGTCACTTTT+GGG - Chr7:20046114-20046133 MsG0780037119.01.T01:CDS 30.0%
AAAAGGAGTTGTGATGTAGA+GGG - Chr7:20048408-20048427 MsG0780037119.01.T01:intron 35.0%
AAACATGAAGCAAAACCAAG+CGG + Chr7:20046521-20046540 None:intergenic 35.0%
AGAGACTCTGTAATGTCAAA+AGG + Chr7:20046221-20046240 None:intergenic 35.0%
AGTTGTACATCGTCTTTATG+TGG + Chr7:20047268-20047287 None:intergenic 35.0%
ATTGAAACAACCTCAAGTCA+TGG + Chr7:20047784-20047803 None:intergenic 35.0%
CAAGTCTAGTTGATCAATCA+TGG - Chr7:20048965-20048984 MsG0780037119.01.T01:CDS 35.0%
CCAAAGCAAAAGGATAAACA+AGG + Chr7:20047411-20047430 None:intergenic 35.0%
CCATTCAGCTGTAATAGTTT+AGG - Chr7:20047324-20047343 MsG0780037119.01.T01:CDS 35.0%
CCTAAACTATTACAGCTGAA+TGG + Chr7:20047327-20047346 None:intergenic 35.0%
CCTAAGTAAACCACTAACAA+AGG + Chr7:20048322-20048341 None:intergenic 35.0%
CCTTTGTTAGTGGTTTACTT+AGG - Chr7:20048319-20048338 MsG0780037119.01.T01:intron 35.0%
CTTCCTATATATGGGACTAA+AGG + Chr7:20047873-20047892 None:intergenic 35.0%
CTTCCTTTAGTCCCATATAT+AGG - Chr7:20047867-20047886 MsG0780037119.01.T01:intron 35.0%
GAGTTGTCTTCAATATCTTG+GGG - Chr7:20048448-20048467 MsG0780037119.01.T01:CDS 35.0%
GTATCAGCAACAAAATACCT+AGG + Chr7:20046092-20046111 None:intergenic 35.0%
TGACAACTAAAACATCTGAC+AGG + Chr7:20046558-20046577 None:intergenic 35.0%
TGATAGTAACCCTTTGTTAG+TGG - Chr7:20048309-20048328 MsG0780037119.01.T01:intron 35.0%
TGGATTAAGTGGGATATCAT+TGG - Chr7:20046385-20046404 MsG0780037119.01.T01:intron 35.0%
TTTAAAGGGAAGAAATCCAG+AGG + Chr7:20046745-20046764 None:intergenic 35.0%
! GCCAGAATTTTATATGGTCT+TGG + Chr7:20047906-20047925 None:intergenic 35.0%
! TCAAAACAGCTAAGGGTTTT+TGG - Chr7:20048730-20048749 MsG0780037119.01.T01:intron 35.0%
! TGATCATTACCCTTTTGTCT+TGG + Chr7:20046143-20046162 None:intergenic 35.0%
!! CCTTGTTTATCCTTTTGCTT+TGG - Chr7:20047408-20047427 MsG0780037119.01.T01:intron 35.0%
!! GTACTTGATGAAGTCACTTT+TGG - Chr7:20046113-20046132 MsG0780037119.01.T01:CDS 35.0%
!! TGTAATTACTGTTTCTGCTC+AGG - Chr7:20046959-20046978 MsG0780037119.01.T01:intron 35.0%
!! TTCACACGATAGAAGCATTA+TGG - Chr7:20048478-20048497 MsG0780037119.01.T01:intron 35.0%
AACATGAAGCAAAACCAAGC+GGG + Chr7:20046520-20046539 None:intergenic 40.0%
AAGAGACATAATGTGAGGGA+AGG - Chr7:20047456-20047475 MsG0780037119.01.T01:intron 40.0%
AAGTATTTCCAAGAGGGACT+TGG - Chr7:20047529-20047548 MsG0780037119.01.T01:intron 40.0%
ACAATAGCGTAGAGTCAAAG+TGG - Chr7:20047481-20047500 MsG0780037119.01.T01:intron 40.0%
ACATATTCCTTCCCCACATT+TGG - Chr7:20046929-20046948 MsG0780037119.01.T01:intron 40.0%
AGCGAAAATTAGCACAACTG+AGG + Chr7:20047047-20047066 None:intergenic 40.0%
AGTTGATCAATCATGGAGGA+TGG - Chr7:20048972-20048991 MsG0780037119.01.T01:CDS 40.0%
ATATTGGATGAACCACTTGC+CGG - Chr7:20046648-20046667 MsG0780037119.01.T01:intron 40.0%
ATCTAATACCACTTTCCCTC+TGG - Chr7:20047681-20047700 MsG0780037119.01.T01:intron 40.0%
CAATCATGGAGGATGGAAAT+GGG - Chr7:20048979-20048998 MsG0780037119.01.T01:CDS 40.0%
CTAATTGTATTGCCAAGGCA+AGG + Chr7:20046451-20046470 None:intergenic 40.0%
GAAAAGGAGTTGTGATGTAG+AGG - Chr7:20048407-20048426 MsG0780037119.01.T01:intron 40.0%
GCGAAAATTAGCACAACTGA+GGG + Chr7:20047046-20047065 None:intergenic 40.0%
GGATGATGCCATGATTTCAT+AGG + Chr7:20047247-20047266 None:intergenic 40.0%
GGCAAATATGCTTTGCAACA+TGG + Chr7:20047011-20047030 None:intergenic 40.0%
GTCGAAGAGACATAATGTGA+GGG - Chr7:20047452-20047471 MsG0780037119.01.T01:intron 40.0%
GTCTAGTTGATCAATCATGG+AGG - Chr7:20048968-20048987 MsG0780037119.01.T01:CDS 40.0%
GTGGTTTACTTAGGCTAATC+AGG - Chr7:20048328-20048347 MsG0780037119.01.T01:intron 40.0%
TAACAATCCAAATGTGGGGA+AGG + Chr7:20046939-20046958 None:intergenic 40.0%
TAAGGGAGAATCTTGCTCTA+GGG - Chr7:20046165-20046184 MsG0780037119.01.T01:CDS 40.0%
TAGAGTCAAAGTGGAAACAG+TGG - Chr7:20047490-20047509 MsG0780037119.01.T01:intron 40.0%
TCAATCATGGAGGATGGAAA+TGG - Chr7:20048978-20048997 MsG0780037119.01.T01:CDS 40.0%
TCGTATTGCAGATTATACCG+AGG + Chr7:20047301-20047320 None:intergenic 40.0%
TTAAGGGAGAATCTTGCTCT+AGG - Chr7:20046164-20046183 MsG0780037119.01.T01:CDS 40.0%
TTAGGCATCAATCGCTCTTT+GGG - Chr7:20047342-20047361 MsG0780037119.01.T01:CDS 40.0%
TTGCAGTTGTTTACCAAGTC+CGG + Chr7:20046670-20046689 None:intergenic 40.0%
TTTAGGCATCAATCGCTCTT+TGG - Chr7:20047341-20047360 MsG0780037119.01.T01:CDS 40.0%
! GTGAATCGCTACTTTCCTTA+TGG - Chr7:20048913-20048932 MsG0780037119.01.T01:CDS 40.0%
!! AAACAGCTAAGGGTTTTTGG+TGG - Chr7:20048733-20048752 MsG0780037119.01.T01:intron 40.0%
!! GTCATTAGCCTTAGATCAAG+TGG + Chr7:20047557-20047576 None:intergenic 40.0%
!!! ACACCATGTCATTTTCCACT+TGG + Chr7:20048604-20048623 None:intergenic 40.0%
!!! TTGATGAAGTCACTTTTGGG+TGG - Chr7:20046117-20046136 MsG0780037119.01.T01:CDS 40.0%
AAGAATCCTCACTCTCTCAG+TGG - Chr7:20046410-20046429 MsG0780037119.01.T01:intron 45.0%
AATGGGTGGCAATCTTAGAC+AGG - Chr7:20048996-20049015 MsG0780037119.01.T01:CDS 45.0%
ACTTGGAGCCACTTGATCTA+AGG - Chr7:20047546-20047565 MsG0780037119.01.T01:intron 45.0%
AGCAGGGTCTTTCAAATGCT+TGG + Chr7:20046866-20046885 None:intergenic 45.0%
ATGTAGAGGGAAGCAATTGG+TGG - Chr7:20048421-20048440 MsG0780037119.01.T01:intron 45.0%
CAAGTGAGGCCTAAAACATC+AGG + Chr7:20047077-20047096 None:intergenic 45.0%
CCACCAAGTGGAAAATGACA+TGG - Chr7:20048525-20048544 MsG0780037119.01.T01:intron 45.0%
GGTCGAAGAGACATAATGTG+AGG - Chr7:20047451-20047470 MsG0780037119.01.T01:intron 45.0%
GTGATGTAGAGGGAAGCAAT+TGG - Chr7:20048418-20048437 MsG0780037119.01.T01:intron 45.0%
TCAGTCAACCAAGCGACAAT+TGG - Chr7:20046575-20046594 MsG0780037119.01.T01:intron 45.0%
TGCACATACGAAGCTCCATA+AGG + Chr7:20048931-20048950 None:intergenic 45.0%
TGTAGAGGGAAGCAATTGGT+GGG - Chr7:20048422-20048441 MsG0780037119.01.T01:intron 45.0%
TTGTTGTCAGCCATGACTTG+AGG - Chr7:20047771-20047790 MsG0780037119.01.T01:intron 45.0%
TTTGGGTGGCCAAGACAAAA+GGG - Chr7:20046131-20046150 MsG0780037119.01.T01:CDS 45.0%
! AACTGAGGGCACAATAAGTG+AGG + Chr7:20047032-20047051 None:intergenic 45.0%
! GCTTCATGTTTTCACCTGAC+TGG - Chr7:20046530-20046549 MsG0780037119.01.T01:intron 45.0%
!! TACAACTGCAGAAAGCACCT+CGG - Chr7:20047281-20047300 MsG0780037119.01.T01:intron 45.0%
!! TTTTGGGTGGCCAAGACAAA+AGG - Chr7:20046130-20046149 MsG0780037119.01.T01:CDS 45.0%
!!! CAGCCATGTCATTTTCCACT+TGG + Chr7:20048531-20048550 None:intergenic 45.0%
!!! CCATGTCATTTTCCACTTGG+TGG + Chr7:20048528-20048547 None:intergenic 45.0%
!!! ATAATTATTTTGATATTAAA+TGG - Chr7:20048259-20048278 MsG0780037119.01.T01:intron 5.0%
!!! CTTTATTTAAAAAAAAAAAA+AGG + Chr7:20047636-20047655 None:intergenic 5.0%
!!! TTTATTTTTTTAAAATTTTC+AGG - Chr7:20046605-20046624 MsG0780037119.01.T01:intron 5.0%
AAAATGCAGCCATACCCGCT+TGG - Chr7:20046503-20046522 MsG0780037119.01.T01:intron 50.0%
AATCCTCACTCTCTCAGTGG+CGG - Chr7:20046413-20046432 MsG0780037119.01.T01:intron 50.0%
CTACCCAGTTAATAGCCCTC+TGG + Chr7:20046193-20046212 None:intergenic 50.0%
GAAGCAAAACCAAGCGGGTA+TGG + Chr7:20046515-20046534 None:intergenic 50.0%
GCTCCAGAGGGCTATTAACT+GGG - Chr7:20046187-20046206 MsG0780037119.01.T01:intron 50.0%
TAAACAAGGCAGAGCCCTCA+AGG + Chr7:20047397-20047416 None:intergenic 50.0%
TCATGGAGGATGGAAATGGG+TGG - Chr7:20048982-20049001 MsG0780037119.01.T01:CDS 50.0%
TCTGCACGTGCTTTCCAATC+TGG + Chr7:20047707-20047726 None:intergenic 50.0%
TGCTTTCCAATCTGGCCAGA+GGG + Chr7:20047699-20047718 None:intergenic 50.0%
TGTTTACCAAGTCCGGCAAG+TGG + Chr7:20046663-20046682 None:intergenic 50.0%
TTACAAACGTCGCCTTGCCT+TGG - Chr7:20046436-20046455 MsG0780037119.01.T01:intron 50.0%
TTCCAATCAGCTCCACCAAG+TGG - Chr7:20048586-20048605 MsG0780037119.01.T01:intron 50.0%
! TTCCACTTGGTGGAGCTGAT+TGG + Chr7:20048591-20048610 None:intergenic 50.0%
!!! AGGGTTTTTGGTGGCGGTAT+AGG - Chr7:20048742-20048761 MsG0780037119.01.T01:intron 50.0%
!!! CAGCTAAGGGTTTTTGGTGG+CGG - Chr7:20048736-20048755 MsG0780037119.01.T01:intron 50.0%
AAGTGGCTCCAAGTCCCTCT+TGG + Chr7:20047540-20047559 None:intergenic 55.0%
ACATCTGACAGGAGCCAGTC+AGG + Chr7:20046547-20046566 None:intergenic 55.0%
CAATCTGGCCAGAGGGAAAG+TGG + Chr7:20047692-20047711 None:intergenic 55.0%
CACTTTCCCTCTGGCCAGAT+TGG - Chr7:20047690-20047709 MsG0780037119.01.T01:intron 55.0%
GATGAACCACTTGCCGGACT+TGG - Chr7:20046654-20046673 MsG0780037119.01.T01:intron 55.0%
GGCTCCAGAGGGCTATTAAC+TGG - Chr7:20046186-20046205 MsG0780037119.01.T01:CDS 55.0%
GTGCTTTCCAATCTGGCCAG+AGG + Chr7:20047700-20047719 None:intergenic 55.0%
TAACCGCCACTGAGAGAGTG+AGG + Chr7:20046419-20046438 None:intergenic 55.0%
! ACTTGGTGGAGTCAGCTGCA+TGG + Chr7:20048514-20048533 None:intergenic 55.0%
! ATGCAGCTGACTCCACCAAG+TGG - Chr7:20048513-20048532 MsG0780037119.01.T01:intron 55.0%
!! ATCTTGCTCTAGGGCTCCAG+AGG - Chr7:20046174-20046193 MsG0780037119.01.T01:CDS 55.0%
!! TCTTGCTCTAGGGCTCCAGA+GGG - Chr7:20046175-20046194 MsG0780037119.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr7 gene 20046077 20049035 20046077 ID=MsG0780037119.01;Name=MsG0780037119.01
Chr7 mRNA 20046077 20049035 20046077 ID=MsG0780037119.01.T01;Parent=MsG0780037119.01;Name=MsG0780037119.01.T01;_AED=0.48;_eAED=0.57;_QI=0|0|0|1|0.75|0.6|5|0|166
Chr7 exon 20048904 20049035 20048904 ID=MsG0780037119.01.T01:exon:3976;Parent=MsG0780037119.01.T01
Chr7 exon 20048643 20048729 20048643 ID=MsG0780037119.01.T01:exon:3975;Parent=MsG0780037119.01.T01
Chr7 exon 20048437 20048485 20048437 ID=MsG0780037119.01.T01:exon:3974;Parent=MsG0780037119.01.T01
Chr7 exon 20047301 20047404 20047301 ID=MsG0780037119.01.T01:exon:3973;Parent=MsG0780037119.01.T01
Chr7 exon 20046077 20046205 20046077 ID=MsG0780037119.01.T01:exon:3972;Parent=MsG0780037119.01.T01
Chr7 CDS 20048904 20049035 20048904 ID=MsG0780037119.01.T01:cds;Parent=MsG0780037119.01.T01
Chr7 CDS 20048643 20048729 20048643 ID=MsG0780037119.01.T01:cds;Parent=MsG0780037119.01.T01
Chr7 CDS 20048437 20048485 20048437 ID=MsG0780037119.01.T01:cds;Parent=MsG0780037119.01.T01
Chr7 CDS 20047301 20047404 20047301 ID=MsG0780037119.01.T01:cds;Parent=MsG0780037119.01.T01
Chr7 CDS 20046077 20046205 20046077 ID=MsG0780037119.01.T01:cds;Parent=MsG0780037119.01.T01
Gene Sequence

>MsG0780037119.01.T01

TTGGTGTTGCAACCTAGGTATTTTGTTGCTGATACTGTACTTGATGAAGTCACTTTTGGGTGGCCAAGACAAAAGGGTAATGATCAATTAAGGGAGAATCTTGCTCTAGGGCTCCAGAGGGCTATTAACTGGGTTGGATTAAGTGGGATATCATTGGATAAGAATCCTCACTCTCTCAGTGGCGGTTACAAACGTCGCCTTGCCTTGGCAATACAATTAGTGCAAATCCCCGATTTATTAATATTGGATGAACCACTTGCCGGACTTGATTGGAAAGCACGTGCAGATGTTGTGAAGCTTTTAAAGCATCTAAAAAAAGAATTAACTGTGCTTGTTGTCAGCCATGACTTGAGGTTGTTTCAATTTTCTCTATACTTTGTGAATCGCTACTTTCCTTATGGAGCTTCGTATGTGCATTTCAGAGAGTTTGCAAGTCTAGTTGATCAATCATGGAGGATGGAAATGGGTGGCAATCTTAGACAGGAGTTTCTACCATTATAA

Protein sequence

>MsG0780037119.01.T01

LVLQPRYFVADTVLDEVTFGWPRQKGNDQLRENLALGLQRAINWVGLSGISLDKNPHSLSGGYKRRLALAIQLVQIPDLLILDEPLAGLDWKARADVVKLLKHLKKELTVLVVSHDLRLFQFSLYFVNRYFPYGASYVHFREFASLVDQSWRMEMGGNLRQEFLPL*