Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380014266.01.T01 | XP_003626313.1 | 95.652 | 92 | 4 | 0 | 1 | 92 | 183 | 274 | 2.45E-57 | 187 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380014266.01.T01 | Q2HTN1 | 95.652 | 92 | 4 | 0 | 1 | 92 | 183 | 274 | 1.17e-57 | 187 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080047910.01 | MsG0380014266.01 | 0.807725 | 4.392724e-50 | 2.465058e-47 |
MsG0080048072.01 | MsG0380014266.01 | 0.801309 | 9.567192e-49 | 4.554149e-46 |
MsG0080048917.01 | MsG0380014266.01 | 0.856422 | 3.251739e-62 | 7.757766e-59 |
MsG0080048978.01 | MsG0380014266.01 | 0.807552 | 4.779699e-50 | 2.670059e-47 |
MsG0080049004.01 | MsG0380014266.01 | 0.836650 | 8.264130e-57 | 1.047975e-53 |
MsG0080049024.01 | MsG0380014266.01 | 0.802639 | 5.098752e-49 | 2.510402e-46 |
MsG0080049053.01 | MsG0380014266.01 | 0.853850 | 1.819311e-61 | 3.985364e-58 |
MsG0080049072.01 | MsG0380014266.01 | 0.815507 | 8.923983e-52 | 6.164479e-49 |
MsG0080049128.01 | MsG0380014266.01 | -0.845164 | 4.818203e-59 | 7.958586e-56 |
MsG0180000193.01 | MsG0380014266.01 | 0.845540 | 3.810296e-59 | 6.370837e-56 |
MsG0180000194.01 | MsG0380014266.01 | 0.841632 | 4.223805e-58 | 6.244040e-55 |
MsG0180000325.01 | MsG0380014266.01 | 0.808174 | 3.525456e-50 | 2.001948e-47 |
MsG0180000467.01 | MsG0380014266.01 | 0.823780 | 1.151962e-53 | 1.001629e-50 |
MsG0180000730.01 | MsG0380014266.01 | 0.801343 | 9.415038e-49 | 4.485568e-46 |
MsG0180001111.01 | MsG0380014266.01 | 0.809249 | 2.077359e-50 | 1.213577e-47 |
MsG0180001113.01 | MsG0380014266.01 | 0.810695 | 1.014406e-50 | 6.156897e-48 |
MsG0180001861.01 | MsG0380014266.01 | 0.837681 | 4.503316e-57 | 5.894384e-54 |
MsG0180001864.01 | MsG0380014266.01 | 0.822702 | 2.056378e-53 | 1.734226e-50 |
MsG0180003296.01 | MsG0380014266.01 | 0.850137 | 2.062071e-60 | 3.999295e-57 |
MsG0180003498.01 | MsG0380014266.01 | 0.830507 | 2.824272e-55 | 2.981450e-52 |
MsG0180003759.01 | MsG0380014266.01 | 0.802763 | 4.808318e-49 | 2.374993e-46 |
MsG0180003779.01 | MsG0380014266.01 | 0.857954 | 1.147333e-62 | 2.881290e-59 |
MsG0180003904.01 | MsG0380014266.01 | 0.836539 | 8.820441e-57 | 1.114874e-53 |
MsG0180003980.01 | MsG0380014266.01 | 0.816813 | 4.556504e-52 | 3.261934e-49 |
MsG0180003985.01 | MsG0380014266.01 | 0.824806 | 6.612005e-54 | 5.919590e-51 |
MsG0180003986.01 | MsG0380014266.01 | 0.808141 | 3.583801e-50 | 2.033208e-47 |
MsG0180004163.01 | MsG0380014266.01 | 0.820974 | 5.163806e-53 | 4.147588e-50 |
MsG0180004177.01 | MsG0380014266.01 | 0.812429 | 4.258586e-51 | 2.707208e-48 |
MsG0180004554.01 | MsG0380014266.01 | 0.862430 | 5.095291e-64 | 1.491962e-60 |
MsG0180004739.01 | MsG0380014266.01 | 0.830723 | 2.501384e-55 | 2.657631e-52 |
MsG0180005291.01 | MsG0380014266.01 | 0.862417 | 5.143936e-64 | 1.505409e-60 |
MsG0180005431.01 | MsG0380014266.01 | 0.804099 | 2.541395e-49 | 1.299003e-46 |
MsG0180006042.01 | MsG0380014266.01 | 0.804004 | 2.659473e-49 | 1.356066e-46 |
MsG0180006159.01 | MsG0380014266.01 | 0.811595 | 6.471059e-51 | 4.022085e-48 |
MsG0280006307.01 | MsG0380014266.01 | 0.838825 | 2.284755e-57 | 3.096508e-54 |
MsG0280006336.01 | MsG0380014266.01 | 0.821738 | 3.442366e-53 | 2.824204e-50 |
MsG0280006452.01 | MsG0380014266.01 | 0.815903 | 7.283845e-52 | 5.085930e-49 |
MsG0280010661.01 | MsG0380014266.01 | 0.812636 | 3.836482e-51 | 2.452136e-48 |
MsG0280010704.01 | MsG0380014266.01 | 0.867949 | 9.386526e-66 | 3.336515e-62 |
MsG0280011162.01 | MsG0380014266.01 | 0.833787 | 4.364422e-56 | 5.079189e-53 |
MsG0280011276.01 | MsG0380014266.01 | 0.824075 | 9.823757e-54 | 8.611945e-51 |
MsG0280011299.01 | MsG0380014266.01 | 0.809949 | 1.469183e-50 | 8.743438e-48 |
MsG0280011301.01 | MsG0380014266.01 | 0.800290 | 1.544455e-48 | 7.164669e-46 |
MsG0380011896.01 | MsG0380014266.01 | 0.843375 | 1.456225e-58 | 2.274132e-55 |
MsG0380012065.01 | MsG0380014266.01 | 0.809321 | 2.005016e-50 | 1.173538e-47 |
MsG0380012281.01 | MsG0380014266.01 | 0.822375 | 2.449964e-53 | 2.047092e-50 |
MsG0380012625.01 | MsG0380014266.01 | 0.802342 | 5.871517e-49 | 2.869212e-46 |
MsG0380012779.01 | MsG0380014266.01 | 0.825345 | 4.932313e-54 | 4.483755e-51 |
MsG0380012780.01 | MsG0380014266.01 | 0.823696 | 1.205272e-53 | 1.045562e-50 |
MsG0380012801.01 | MsG0380014266.01 | 0.806687 | 7.287910e-50 | 3.980815e-47 |
MsG0380012876.01 | MsG0380014266.01 | 0.817292 | 3.556122e-52 | 2.579352e-49 |
MsG0380013128.01 | MsG0380014266.01 | 0.834098 | 3.646853e-56 | 4.283909e-53 |
MsG0380013506.01 | MsG0380014266.01 | 0.819390 | 1.190972e-52 | 9.152074e-50 |
MsG0380014266.01 | MsG0380015081.01 | 0.855568 | 5.781554e-62 | 1.340502e-58 |
MsG0380014266.01 | MsG0380015111.01 | 0.868141 | 8.138538e-66 | 2.912890e-62 |
MsG0380014266.01 | MsG0380015271.01 | 0.802280 | 6.045533e-49 | 2.949575e-46 |
MsG0380014266.01 | MsG0380015546.01 | 0.801652 | 8.139214e-49 | 3.907911e-46 |
MsG0380014266.01 | MsG0380015752.01 | 0.819534 | 1.104484e-52 | 8.522368e-50 |
MsG0380014266.01 | MsG0380015900.01 | 0.823636 | 1.244943e-53 | 1.078011e-50 |
MsG0380014266.01 | MsG0380015971.01 | 0.818259 | 2.151806e-52 | 1.602682e-49 |
MsG0380014266.01 | MsG0380016241.01 | 0.818631 | 1.772584e-52 | 1.333867e-49 |
MsG0380014266.01 | MsG0380016699.01 | 0.828891 | 6.984778e-55 | 7.034044e-52 |
MsG0380014266.01 | MsG0380016790.01 | 0.810118 | 1.351221e-50 | 8.077099e-48 |
MsG0380014266.01 | MsG0380016835.01 | 0.801887 | 7.283628e-49 | 3.518291e-46 |
MsG0380014266.01 | MsG0380016931.01 | 0.812210 | 4.754588e-51 | 3.004605e-48 |
MsG0380014266.01 | MsG0380016932.01 | 0.851687 | 7.543644e-61 | 1.539128e-57 |
MsG0380014266.01 | MsG0380016957.01 | 0.835283 | 1.836134e-56 | 2.235112e-53 |
MsG0380014266.01 | MsG0380016960.01 | 0.810137 | 1.338592e-50 | 8.005303e-48 |
MsG0380014266.01 | MsG0380017018.01 | 0.855928 | 4.537821e-62 | 1.064876e-58 |
MsG0380014266.01 | MsG0380017100.01 | 0.803700 | 3.076328e-49 | 1.556341e-46 |
MsG0380014266.01 | MsG0380017309.01 | 0.860771 | 1.637365e-63 | 4.527258e-60 |
MsG0380014266.01 | MsG0380017472.01 | 0.803059 | 4.176781e-49 | 2.078501e-46 |
MsG0380014266.01 | MsG0380017474.01 | 0.801430 | 9.036973e-49 | 4.314811e-46 |
MsG0380014266.01 | MsG0380017895.01 | 0.832277 | 1.036263e-55 | 1.152583e-52 |
MsG0380014266.01 | MsG0380017962.01 | 0.810594 | 1.066576e-50 | 6.455973e-48 |
MsG0380014266.01 | MsG0380017966.01 | 0.847082 | 1.448445e-59 | 2.545498e-56 |
MsG0380014266.01 | MsG0380018066.01 | 0.855523 | 5.960270e-62 | 1.379854e-58 |
MsG0380014266.01 | MsG0380018067.01 | 0.843108 | 1.715800e-58 | 2.656501e-55 |
MsG0380014266.01 | MsG0380018072.01 | 0.807017 | 6.206345e-50 | 3.419180e-47 |
MsG0380014266.01 | MsG0480018190.01 | 0.818515 | 1.883012e-52 | 1.412533e-49 |
MsG0380014266.01 | MsG0480018626.01 | 0.823133 | 1.631807e-53 | 1.393075e-50 |
MsG0380014266.01 | MsG0480020139.01 | 0.813558 | 2.409238e-51 | 1.578453e-48 |
MsG0380014266.01 | MsG0480020496.01 | 0.833410 | 5.418929e-56 | 6.235464e-53 |
MsG0380014266.01 | MsG0480021143.01 | 0.827219 | 1.765881e-54 | 1.693925e-51 |
MsG0380014266.01 | MsG0480021205.01 | 0.813825 | 2.104265e-51 | 1.388636e-48 |
MsG0380014266.01 | MsG0480021307.01 | 0.810149 | 1.330277e-50 | 7.958014e-48 |
MsG0380014266.01 | MsG0480021317.01 | 0.808765 | 2.637428e-50 | 1.520889e-47 |
MsG0380014266.01 | MsG0480021521.01 | 0.825651 | 4.174231e-54 | 3.827891e-51 |
MsG0380014266.01 | MsG0480021709.01 | 0.803549 | 3.306644e-49 | 1.666482e-46 |
MsG0380014266.01 | MsG0480022286.01 | 0.833049 | 6.666423e-56 | 7.589095e-53 |
MsG0380014266.01 | MsG0480022295.01 | 0.841164 | 5.611091e-58 | 8.174186e-55 |
MsG0380014266.01 | MsG0480022366.01 | 0.862820 | 3.865324e-64 | 1.147416e-60 |
MsG0380014266.01 | MsG0480022417.01 | 0.821317 | 4.305528e-53 | 3.490973e-50 |
MsG0380014266.01 | MsG0480022466.01 | 0.838128 | 3.455805e-57 | 4.584744e-54 |
MsG0380014266.01 | MsG0480022837.01 | 0.826968 | 2.026875e-54 | 1.930194e-51 |
MsG0380014266.01 | MsG0480023444.01 | 0.817740 | 2.819389e-52 | 2.070365e-49 |
MsG0380014266.01 | MsG0480023558.01 | 0.876774 | 1.068280e-68 | 5.244374e-65 |
MsG0380014266.01 | MsG0480023717.01 | 0.821354 | 4.222792e-53 | 3.427372e-50 |
MsG0380014266.01 | MsG0480023749.01 | 0.837153 | 6.146826e-57 | 7.914868e-54 |
MsG0380014266.01 | MsG0580024128.01 | 0.834886 | 2.311796e-56 | 2.780491e-53 |
MsG0380014266.01 | MsG0580024140.01 | 0.823428 | 1.392638e-53 | 1.198686e-50 |
MsG0380014266.01 | MsG0580024487.01 | 0.818327 | 2.076851e-52 | 1.549844e-49 |
MsG0380014266.01 | MsG0580024571.01 | 0.851257 | 9.985142e-61 | 2.009233e-57 |
MsG0380014266.01 | MsG0580024678.01 | 0.826239 | 3.025498e-54 | 2.821337e-51 |
MsG0380014266.01 | MsG0580024875.01 | 0.835459 | 1.657490e-56 | 2.028117e-53 |
MsG0380014266.01 | MsG0580025034.01 | 0.807623 | 4.617716e-50 | 2.584349e-47 |
MsG0380014266.01 | MsG0580025355.01 | 0.831288 | 1.817108e-55 | 1.963006e-52 |
MsG0380014266.01 | MsG0580025392.01 | 0.812045 | 5.165289e-51 | 3.249198e-48 |
MsG0380014266.01 | MsG0580025513.01 | 0.808262 | 3.377401e-50 | 1.922277e-47 |
MsG0380014266.01 | MsG0580027887.01 | 0.827035 | 1.953447e-54 | 1.863755e-51 |
MsG0380014266.01 | MsG0580028461.01 | 0.819347 | 1.218039e-52 | 9.348382e-50 |
MsG0380014266.01 | MsG0580029172.01 | 0.843453 | 1.388087e-58 | 2.172899e-55 |
MsG0380014266.01 | MsG0580029816.01 | 0.849319 | 3.490814e-60 | 6.592710e-57 |
MsG0380014266.01 | MsG0680030470.01 | 0.814872 | 1.234638e-51 | 8.381435e-49 |
MsG0380014266.01 | MsG0680030477.01 | 0.836118 | 1.128530e-56 | 1.408606e-53 |
MsG0380014266.01 | MsG0680030757.01 | 0.821884 | 3.184404e-53 | 2.623619e-50 |
MsG0380014266.01 | MsG0680030759.01 | 0.802303 | 5.981415e-49 | 2.920096e-46 |
MsG0380014266.01 | MsG0680030761.01 | 0.804225 | 2.392325e-49 | 1.226710e-46 |
MsG0380014266.01 | MsG0680032055.01 | 0.809745 | 1.625638e-50 | 9.623317e-48 |
MsG0380014266.01 | MsG0680032840.01 | 0.833053 | 6.652010e-56 | 7.573422e-53 |
MsG0380014266.01 | MsG0680033007.01 | 0.800615 | 1.326268e-48 | 6.203238e-46 |
MsG0380014266.01 | MsG0680034419.01 | 0.808166 | 3.540207e-50 | 2.009847e-47 |
MsG0380014266.01 | MsG0780036064.01 | 0.845469 | 3.982191e-59 | 6.643052e-56 |
MsG0380014266.01 | MsG0780036068.01 | 0.812302 | 4.538833e-51 | 2.875398e-48 |
MsG0380014266.01 | MsG0780036909.01 | 0.820261 | 7.532275e-53 | 5.930725e-50 |
MsG0380014266.01 | MsG0780037734.01 | 0.808822 | 2.564066e-50 | 1.480842e-47 |
MsG0380014266.01 | MsG0780039422.01 | 0.835080 | 2.065722e-56 | 2.498882e-53 |
MsG0380014266.01 | MsG0780039596.01 | 0.818514 | 1.884390e-52 | 1.413492e-49 |
MsG0380014266.01 | MsG0780039902.01 | 0.825999 | 3.449704e-54 | 3.195157e-51 |
MsG0380014266.01 | MsG0780040072.01 | 0.830127 | 3.498197e-55 | 3.652559e-52 |
MsG0380014266.01 | MsG0780040121.01 | 0.809309 | 2.016271e-50 | 1.179744e-47 |
MsG0380014266.01 | MsG0780040159.01 | 0.813631 | 2.320661e-51 | 1.523474e-48 |
MsG0380014266.01 | MsG0780040283.01 | 0.815355 | 9.647008e-52 | 6.635962e-49 |
MsG0380014266.01 | MsG0780040331.01 | 0.823652 | 1.234224e-53 | 1.069269e-50 |
MsG0380014266.01 | MsG0780040352.01 | 0.835364 | 1.752045e-56 | 2.137911e-53 |
MsG0380014266.01 | MsG0780040567.01 | 0.838883 | 2.206687e-57 | 2.996007e-54 |
MsG0380014266.01 | MsG0780040621.01 | -0.802805 | 4.712268e-49 | 2.330116e-46 |
MsG0380014266.01 | MsG0780040685.01 | 0.801273 | 9.733324e-49 | 4.629011e-46 |
MsG0380014266.01 | MsG0780040804.01 | 0.822992 | 1.760225e-53 | 1.496689e-50 |
MsG0380014266.01 | MsG0780040833.01 | 0.812317 | 4.506077e-51 | 2.855769e-48 |
MsG0380014266.01 | MsG0780040884.01 | 0.806884 | 6.623274e-50 | 3.636320e-47 |
MsG0380014266.01 | MsG0780041007.01 | 0.808384 | 3.180787e-50 | 1.816187e-47 |
MsG0380014266.01 | MsG0780041106.01 | 0.834617 | 2.702497e-56 | 3.224272e-53 |
MsG0380014266.01 | MsG0780041173.01 | 0.820753 | 5.807125e-53 | 4.635126e-50 |
MsG0380014266.01 | MsG0780041480.01 | 0.833056 | 6.637628e-56 | 7.557744e-53 |
MsG0380014266.01 | MsG0780041720.01 | 0.801745 | 7.788604e-49 | 3.748386e-46 |
MsG0380014266.01 | MsG0780041809.01 | 0.819699 | 1.012743e-52 | 7.850239e-50 |
MsG0380014266.01 | MsG0880041855.01 | 0.801761 | 7.728570e-49 | 3.721027e-46 |
MsG0380014266.01 | MsG0880042009.01 | 0.826157 | 3.164275e-54 | 2.943836e-51 |
MsG0380014266.01 | MsG0880042500.01 | 0.823119 | 1.643998e-53 | 1.402918e-50 |
MsG0380014266.01 | MsG0880042889.01 | 0.833207 | 6.088627e-56 | 6.963664e-53 |
MsG0380014266.01 | MsG0880043032.01 | 0.834323 | 3.202310e-56 | 3.787587e-53 |
MsG0380014266.01 | MsG0880043148.01 | 0.814347 | 1.613266e-51 | 1.079843e-48 |
MsG0380014266.01 | MsG0880044339.01 | 0.811945 | 5.429706e-51 | 3.406532e-48 |
MsG0380014266.01 | MsG0880044352.01 | 0.837176 | 6.066458e-57 | 7.816920e-54 |
MsG0380014266.01 | MsG0880045778.01 | 0.846519 | 2.064465e-59 | 3.562882e-56 |
MsG0380014266.01 | MsG0880046041.01 | 0.884788 | 1.421858e-71 | 9.509184e-68 |
MsG0380014266.01 | MsG0880046104.01 | 0.849470 | 3.168456e-60 | 6.012402e-57 |
MsG0380014266.01 | MsG0880046267.01 | 0.828356 | 9.408259e-55 | 9.329018e-52 |
MsG0380014266.01 | MsG0880046462.01 | 0.826434 | 2.718377e-54 | 2.549092e-51 |
MsG0380014266.01 | MsG0880047318.01 | 0.806617 | 7.540972e-50 | 4.111646e-47 |
MsG0380014266.01 | MsG0880047363.01 | 0.849074 | 4.082629e-60 | 7.649619e-57 |
MsG0380014266.01 | MsG0880047536.01 | 0.835703 | 1.438310e-56 | 1.772943e-53 |
MsG0380014266.01 | MsG0880047567.01 | 0.806375 | 8.481847e-50 | 4.596261e-47 |
MsG0380014266.01 | MsG0880047578.01 | 0.812642 | 3.825892e-51 | 2.445676e-48 |
MsG0380014266.01 | MsG0880047616.01 | 0.824842 | 6.482151e-54 | 5.809118e-51 |
MsG0380014266.01 | MsG0880047628.01 | 0.824292 | 8.733551e-54 | 7.703031e-51 |
MsG0380014266.01 | MsG0880047661.01 | 0.827970 | 1.165929e-54 | 1.143213e-51 |
MsG0280006607.01 | MsG0380014266.01 | 0.830482 | 2.865430e-55 | 3.022575e-52 |
MsG0280006805.01 | MsG0380014266.01 | 0.804877 | 1.748989e-49 | 9.121604e-47 |
MsG0280007136.01 | MsG0380014266.01 | 0.811377 | 7.216185e-51 | 4.459730e-48 |
MsG0280007247.01 | MsG0380014266.01 | 0.814719 | 1.335222e-51 | 9.027475e-49 |
MsG0280007649.01 | MsG0380014266.01 | 0.809418 | 1.911228e-50 | 1.121575e-47 |
MsG0280007650.01 | MsG0380014266.01 | 0.816230 | 6.154992e-52 | 4.336599e-49 |
MsG0280007702.01 | MsG0380014266.01 | 0.816074 | 6.670775e-52 | 4.680136e-49 |
MsG0280007831.01 | MsG0380014266.01 | 0.818306 | 2.100166e-52 | 1.566314e-49 |
MsG0280008379.01 | MsG0380014266.01 | 0.803867 | 2.840210e-49 | 1.443173e-46 |
MsG0280008430.01 | MsG0380014266.01 | 0.807446 | 5.035846e-50 | 2.805468e-47 |
MsG0280008935.01 | MsG0380014266.01 | 0.871555 | 6.253136e-67 | 2.533209e-63 |
MsG0280009579.01 | MsG0380014266.01 | 0.839818 | 1.261682e-57 | 1.762932e-54 |
MsG0280010016.01 | MsG0380014266.01 | 0.813492 | 2.490479e-51 | 1.628860e-48 |
MsG0280010149.01 | MsG0380014266.01 | 0.848387 | 6.332148e-60 | 1.160109e-56 |
MsG0280010356.01 | MsG0380014266.01 | 0.813132 | 2.988044e-51 | 1.935030e-48 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380014266.01.T01 | MTR_7g113780 | 95.652 | 92 | 4 | 0 | 1 | 92 | 183 | 274 | 2.96e-61 | 187 |
MsG0380014266.01.T01 | MTR_8g078200 | 31.522 | 92 | 63 | 0 | 1 | 92 | 202 | 293 | 6.79e-12 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380014266.01.T01 | AT3G06470 | 63.043 | 92 | 30 | 2 | 1 | 92 | 190 | 277 | 2.84e-31 | 110 |
MsG0380014266.01.T01 | AT3G06460 | 48.780 | 82 | 39 | 2 | 1 | 81 | 187 | 266 | 3.96e-17 | 73.9 |
Find 22 sgRNAs with CRISPR-Local
Find 23 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCGGTGGTGGTGGATGCTC+TGG | 0.244745 | 3:+52179748 | MsG0380014266.01.T01:CDS |
TGGTGGATGCTCTGGGATGA+AGG | 0.407237 | 3:+52179756 | MsG0380014266.01.T01:CDS |
CTTTATTATCACTTCGGATC+CGG | 0.421923 | 3:+52179730 | MsG0380014266.01.T01:CDS |
GATGCTCTGGGATGAAGGCT+TGG | 0.437263 | 3:+52179761 | MsG0380014266.01.T01:CDS |
CACTTCGGATCCGGTGGTGG+TGG | 0.447681 | 3:+52179739 | MsG0380014266.01.T01:CDS |
GTGTTCAGCTTTGCCGTCTC+CGG | 0.450503 | 3:+52179700 | MsG0380014266.01.T01:CDS |
CCGGTGGTGGTGGATGCTCT+GGG | 0.474001 | 3:+52179749 | MsG0380014266.01.T01:CDS |
TGAACACGAACTGAACAATC+TGG | 0.475700 | 3:-52179684 | None:intergenic |
TACTACTTCCTCACCACTGT+TGG | 0.476064 | 3:+52179625 | MsG0380014266.01.T01:CDS |
TATCACTTCGGATCCGGTGG+TGG | 0.497768 | 3:+52179736 | MsG0380014266.01.T01:CDS |
CTTATGCTTTATTATCACTT+CGG | 0.498009 | 3:+52179724 | MsG0380014266.01.T01:CDS |
CCCAGAGCATCCACCACCAC+CGG | 0.521985 | 3:-52179749 | None:intergenic |
TCGGTAACGACGCGTTTCCA+CGG | 0.536456 | 3:-52179658 | None:intergenic |
GTGATAATAAAGCATAAGAC+CGG | 0.555355 | 3:-52179719 | None:intergenic |
ATAAAGCATAAGACCGGAGA+CGG | 0.574571 | 3:-52179713 | None:intergenic |
TATTATCACTTCGGATCCGG+TGG | 0.582897 | 3:+52179733 | MsG0380014266.01.T01:CDS |
CGACGCGTTTCCACGGCGGT+CGG | 0.590079 | 3:-52179651 | None:intergenic |
GTCGGATTCCAACAGTGGTG+AGG | 0.628146 | 3:-52179633 | None:intergenic |
CGGCGGTCGGATTCCAACAG+TGG | 0.641832 | 3:-52179638 | None:intergenic |
GAACTGAACAATCTGGCAGT+CGG | 0.662736 | 3:-52179677 | None:intergenic |
CTGTTGGAATCCGACCGCCG+TGG | 0.731632 | 3:+52179641 | MsG0380014266.01.T01:CDS |
GTAACGACGCGTTTCCACGG+CGG | 0.765126 | 3:-52179655 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CTTATGCTTTATTATCACTT+CGG | + | Chr3:52179724-52179743 | MsG0380014266.01.T01:CDS | 25.0% |
!!! | TGTTTTTAATGCTTCTCTTT+TGG | + | Chr3:52179795-52179814 | MsG0380014266.01.T01:CDS | 25.0% |
GTGATAATAAAGCATAAGAC+CGG | - | Chr3:52179722-52179741 | None:intergenic | 30.0% | |
CTTTATTATCACTTCGGATC+CGG | + | Chr3:52179730-52179749 | MsG0380014266.01.T01:CDS | 35.0% | |
ATAAAGCATAAGACCGGAGA+CGG | - | Chr3:52179716-52179735 | None:intergenic | 40.0% | |
TGAACACGAACTGAACAATC+TGG | - | Chr3:52179687-52179706 | None:intergenic | 40.0% | |
GAACTGAACAATCTGGCAGT+CGG | - | Chr3:52179680-52179699 | None:intergenic | 45.0% | |
TACTACTTCCTCACCACTGT+TGG | + | Chr3:52179625-52179644 | MsG0380014266.01.T01:CDS | 45.0% | |
TATTATCACTTCGGATCCGG+TGG | + | Chr3:52179733-52179752 | MsG0380014266.01.T01:CDS | 45.0% | |
GTCGGATTCCAACAGTGGTG+AGG | - | Chr3:52179636-52179655 | None:intergenic | 55.0% | |
GTGTTCAGCTTTGCCGTCTC+CGG | + | Chr3:52179700-52179719 | MsG0380014266.01.T01:CDS | 55.0% | |
TATCACTTCGGATCCGGTGG+TGG | + | Chr3:52179736-52179755 | MsG0380014266.01.T01:CDS | 55.0% | |
TCGGTAACGACGCGTTTCCA+CGG | - | Chr3:52179661-52179680 | None:intergenic | 55.0% | |
!! | GATGCTCTGGGATGAAGGCT+TGG | + | Chr3:52179761-52179780 | MsG0380014266.01.T01:CDS | 55.0% |
!! | TGGTGGATGCTCTGGGATGA+AGG | + | Chr3:52179756-52179775 | MsG0380014266.01.T01:CDS | 55.0% |
GTAACGACGCGTTTCCACGG+CGG | - | Chr3:52179658-52179677 | None:intergenic | 60.0% | |
CGGCGGTCGGATTCCAACAG+TGG | - | Chr3:52179641-52179660 | None:intergenic | 65.0% | |
CTGTTGGAATCCGACCGCCG+TGG | + | Chr3:52179641-52179660 | MsG0380014266.01.T01:CDS | 65.0% | |
! | CACTTCGGATCCGGTGGTGG+TGG | + | Chr3:52179739-52179758 | MsG0380014266.01.T01:CDS | 65.0% |
! | CCCAGAGCATCCACCACCAC+CGG | - | Chr3:52179752-52179771 | None:intergenic | 65.0% |
!! | CCGGTGGTGGTGGATGCTCT+GGG | + | Chr3:52179749-52179768 | MsG0380014266.01.T01:CDS | 65.0% |
!! | TCCGGTGGTGGTGGATGCTC+TGG | + | Chr3:52179748-52179767 | MsG0380014266.01.T01:CDS | 65.0% |
CGACGCGTTTCCACGGCGGT+CGG | - | Chr3:52179654-52179673 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 52179616 | 52179894 | 52179616 | ID=MsG0380014266.01;Name=MsG0380014266.01 |
Chr3 | mRNA | 52179616 | 52179894 | 52179616 | ID=MsG0380014266.01.T01;Parent=MsG0380014266.01;Name=MsG0380014266.01.T01;_AED=0.45;_eAED=0.45;_QI=0|-1|0|1|-1|1|1|0|92 |
Chr3 | exon | 52179616 | 52179894 | 52179616 | ID=MsG0380014266.01.T01:exon:16510;Parent=MsG0380014266.01.T01 |
Chr3 | CDS | 52179616 | 52179894 | 52179616 | ID=MsG0380014266.01.T01:cds;Parent=MsG0380014266.01.T01 |
Gene Sequence |
Protein sequence |