AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1235880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1235880 MtrunA17_Chr8g0345861 61.111 90 11 2 1 67 1 89 1.26e-23 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 55 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAATTATGCATACCTTTC+TGG 0.079710 8_2:+14162476 None:intergenic
CTGAAATAATTGGGAGTTAA+AGG 0.160593 8_2:-14162315 Msa1235880:three_prime_UTR
GAAACAATTACTGAAATAAT+TGG 0.197705 8_2:-14162325 Msa1235880:three_prime_UTR
TTTAGTGCATAAGGACATTT+TGG 0.202304 8_2:-14162091 Msa1235880:three_prime_UTR
CCTGGAGTTCTTGAGTTAAT+AGG 0.246781 8_2:-14164041 Msa1235880:three_prime_UTR
CAAGAAGCTGTATGATTCAT+AGG 0.325668 8_2:-14164366 Msa1235880:intron
GATAGACTTCCTTTGATTCC+TGG 0.331109 8_2:-14164059 Msa1235880:three_prime_UTR
TCAATCATCTTTAGTGCATA+AGG 0.341287 8_2:-14162100 Msa1235880:three_prime_UTR
GTTCTTGAGTTAATAGGAAT+TGG 0.346748 8_2:-14164035 Msa1235880:three_prime_UTR
CAGAGAAGAAGAGGAGATTA+AGG 0.361311 8_2:+14164862 None:intergenic
TAATTGGGAGTTAAAGGAAT+TGG 0.364137 8_2:-14162309 Msa1235880:three_prime_UTR
CTTAATCTCCTCTTCTTCTC+TGG 0.368815 8_2:-14164861 Msa1235880:CDS
ACTGGACTTGCATAACATTA+TGG 0.376288 8_2:-14161995 Msa1235880:three_prime_UTR
CAAGAAAATAATAAATTACA+TGG 0.393724 8_2:+14162179 None:intergenic
ATAATAAATTACATGGGATA+AGG 0.395512 8_2:+14162186 None:intergenic
TGCTTGGACCATGCCATGAT+AGG 0.406756 8_2:+14162058 None:intergenic
AAATTACATGGGATAAGGTT+TGG 0.410562 8_2:+14162191 None:intergenic
ATCCAGCCTCTTTGATTGCA+AGG 0.415625 8_2:-14164825 Msa1235880:CDS
AAAGATTGCTCGTGATGTTA+TGG 0.420998 8_2:-14164457 Msa1235880:CDS
TGGTGCAATAAAACCTATCA+TGG 0.432794 8_2:-14162071 Msa1235880:three_prime_UTR
TAGCTAGTGTATTTGCACTA+TGG 0.434144 8_2:-14164211 Msa1235880:three_prime_UTR
ATTCTATTGAAGATTTCATC+AGG 0.442328 8_2:-14162242 Msa1235880:three_prime_UTR
GATGTTATGGTAATGGCAAC+AGG 0.459632 8_2:-14164444 Msa1235880:CDS
TTTGCACTATGGAGCTCAGC+TGG 0.465802 8_2:-14164200 Msa1235880:three_prime_UTR
AAACAATTACTGAAATAATT+GGG 0.466670 8_2:-14162324 Msa1235880:three_prime_UTR
CTTGAGCCAGCCTAAGGCTA+AGG 0.472882 8_2:+14162026 None:intergenic
GAAGAAGCTAATGATTGAAA+AGG 0.472887 8_2:+14164800 None:intergenic
CTGGCTCTTGAGCCAGCCTA+AGG 0.478161 8_2:+14162020 None:intergenic
TGAAGATTCTTAACAAACTC+AGG 0.486308 8_2:+14164387 None:intergenic
AAAAGTAGGCCCTTAGCCTT+AGG 0.488103 8_2:-14162036 Msa1235880:three_prime_UTR
TCAGTTGAGTCAACTTCTGT+TGG 0.503744 8_2:+14164414 None:intergenic
TAAATATGCAGTGGGTTCAT+TGG 0.505381 8_2:-14164237 Msa1235880:three_prime_UTR
CCTATTAACTCAAGAACTCC+AGG 0.507872 8_2:+14164041 None:intergenic
AGCCTTGCAATCAAAGAGGC+TGG 0.513488 8_2:+14164823 None:intergenic
TTAATAGGAATTGGTTACAC+TGG 0.524822 8_2:-14164026 Msa1235880:three_prime_UTR
AGGAATTGGACATTCTAAGA+TGG 0.536705 8_2:-14162295 Msa1235880:three_prime_UTR
TAATAGGAATTGGTTACACT+GGG 0.540472 8_2:-14164025 Msa1235880:three_prime_UTR
TCAAGAACTCCAGGAATCAA+AGG 0.544788 8_2:+14164050 None:intergenic
GGATATAGCCAGAGAAGAAG+AGG 0.549137 8_2:+14164853 None:intergenic
TGCTCGTGATGTTATGGTAA+TGG 0.557462 8_2:-14164451 Msa1235880:CDS
ATCAAAGAGGCTGGATGAAG+AGG 0.557884 8_2:+14164832 None:intergenic
TTTGATGATAAATATGCAGT+GGG 0.562064 8_2:-14164245 Msa1235880:three_prime_UTR
GTAGGCCCTTAGCCTTAGGC+TGG 0.563017 8_2:-14162032 Msa1235880:three_prime_UTR
ATTTGATGATAAATATGCAG+TGG 0.570116 8_2:-14164246 Msa1235880:three_prime_UTR
TTGAGCCAGCCTAAGGCTAA+GGG 0.580658 8_2:+14162027 None:intergenic
GACTTGCATAACATTATGGC+GGG 0.583561 8_2:-14161991 Msa1235880:three_prime_UTR
TGTCACATGACATAGTCAAT+CGG 0.588443 8_2:-14161965 Msa1235880:three_prime_UTR
TTAGGCTGGCTCAAGAGCCA+GGG 0.590307 8_2:-14162018 Msa1235880:three_prime_UTR
TGTTATGCAAGTCCAGTCCC+TGG 0.595007 8_2:+14162001 None:intergenic
CAATAAAACCTATCATGGCA+TGG 0.609840 8_2:-14162066 Msa1235880:three_prime_UTR
GGCATGGTCCAAGCAAAAGT+AGG 0.624766 8_2:-14162050 Msa1235880:three_prime_UTR
GGACTTGCATAACATTATGG+CGG 0.639447 8_2:-14161992 Msa1235880:three_prime_UTR
AAGAAAATAATAAATTACAT+GGG 0.660496 8_2:+14162180 None:intergenic
AAGGAGCCTTGCAATCAAAG+AGG 0.668047 8_2:+14164819 None:intergenic
AATAGGAATTGGTTACACTG+GGG 0.760636 8_2:-14164024 Msa1235880:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG - chr8_2:14164169-14164188 Msa1235880:intron 0.0%
!! AAAATAAATAACATAATTCT+AGG + chr8_2:14162542-14162561 None:intergenic 10.0%
!!! AATTATGTTATTTATTTTGT+TGG - chr8_2:14162544-14162563 Msa1235880:intron 10.0%
!! ATTTCAAAAAAAAAAATACA+AGG + chr8_2:14162903-14162922 None:intergenic 10.0%
!!! AGTATTAATATTTATTTTTG+CGG + chr8_2:14163392-14163411 None:intergenic 10.0%
!!! AAAAAATATATTTTGCATTT+TGG - chr8_2:14163651-14163670 Msa1235880:intron 10.0%
!! TATATATATATATATATAGG+AGG - chr8_2:14164234-14164253 Msa1235880:three_prime_UTR 10.0%
!! AAGAAAATAATAAATTACAT+GGG + chr8_2:14164652-14164671 None:intergenic 10.0%
!! TCAATAATAAACATTAAGAA+AGG + chr8_2:14162519-14162538 None:intergenic 15.0%
!! ATATTAATATTACACAAACA+CGG + chr8_2:14163595-14163614 None:intergenic 15.0%
!! GTATTACAATATTACAATAT+CGG + chr8_2:14163945-14163964 None:intergenic 15.0%
!!! TATTTTGTCATAAAATCAAA+TGG + chr8_2:14164129-14164148 None:intergenic 15.0%
!! AAACAATTACTGAAATAATT+GGG - chr8_2:14164505-14164524 Msa1235880:intron 15.0%
!! CAAGAAAATAATAAATTACA+TGG + chr8_2:14164653-14164672 None:intergenic 15.0%
!!! AAAATAAGATTGTTTTAAAG+TGG + chr8_2:14164708-14164727 None:intergenic 15.0%
!! CTTAGATTTAAATATATGAC+TGG - chr8_2:14162845-14162864 Msa1235880:intron 20.0%
!!! TAATATTTATTTTTGCGGTT+CGG + chr8_2:14163387-14163406 None:intergenic 20.0%
!!! ATGTGATTTTTATTTTGGAT+CGG - chr8_2:14163767-14163786 Msa1235880:intron 20.0%
!! TCTAATCTTATCAATTTGTA+AGG + chr8_2:14163993-14164012 None:intergenic 20.0%
!! TTACAAATTGATAAGATTAG+AGG - chr8_2:14163992-14164011 Msa1235880:intron 20.0%
!! AAATATAGAAGATGAATACT+AGG + chr8_2:14164293-14164312 None:intergenic 20.0%
!! TTCACTATAATTTATCACAA+TGG - chr8_2:14164386-14164405 Msa1235880:CDS 20.0%
!! AGAACTTATACAAAAACTAA+AGG - chr8_2:14164482-14164501 Msa1235880:intron 20.0%
!! GAAACAATTACTGAAATAAT+TGG - chr8_2:14164504-14164523 Msa1235880:intron 20.0%
!! ATAATAAATTACATGGGATA+AGG + chr8_2:14164646-14164665 None:intergenic 20.0%
! AACTATTGATGAAGATTAGA+CGG - chr8_2:14162175-14162194 Msa1235880:three_prime_UTR 25.0%
! CAATATAGATGGATGTAATT+TGG + chr8_2:14162283-14162302 None:intergenic 25.0%
! TATATTGCTTACTTCTTCTA+GGG - chr8_2:14162296-14162315 Msa1235880:three_prime_UTR 25.0%
! ATAATATTAACCTTCATCCT+AGG + chr8_2:14162332-14162351 None:intergenic 25.0%
! TAGGTTGTTAGAAATTGTAA+TGG - chr8_2:14162482-14162501 Msa1235880:intron 25.0%
!! ATTTGATGATAAATATGCAG+TGG - chr8_2:14162583-14162602 Msa1235880:intron 25.0%
!! TTTGATGATAAATATGCAGT+GGG - chr8_2:14162584-14162603 Msa1235880:intron 25.0%
! ACAATAGTATTTGACATGAA+GGG + chr8_2:14163182-14163201 None:intergenic 25.0%
!!! CAAATATATTCGGTTTTTTG+CGG + chr8_2:14163282-14163301 None:intergenic 25.0%
! CAAATATATGCGGTTTAATT+TGG + chr8_2:14163693-14163712 None:intergenic 25.0%
! CAAATTAAACCGCATATATT+TGG - chr8_2:14163691-14163710 Msa1235880:intron 25.0%
! TCCAAAATAAAAATCACATG+CGG + chr8_2:14163766-14163785 None:intergenic 25.0%
! ACAATAGTATTTGACATGAA+GGG + chr8_2:14163182-14163201 None:intergenic 25.0%
!!! AGTTTTTTCCAGTAATTTCT+AGG - chr8_2:14164068-14164087 Msa1235880:three_prime_UTR 25.0%
!!! GTTTTTTCCAGTAATTTCTA+GGG - chr8_2:14164069-14164088 Msa1235880:intron 25.0%
! ATTCTATTGAAGATTTCATC+AGG - chr8_2:14164587-14164606 Msa1235880:intron 25.0%
GAAGAAGCTAATGATTGAAA+AGG + chr8_2:14162032-14162051 None:intergenic 30.0%
GAAGAAGTAAGCAATATAGA+TGG + chr8_2:14162294-14162313 None:intergenic 30.0%
CTATATTGCTTACTTCTTCT+AGG - chr8_2:14162295-14162314 Msa1235880:three_prime_UTR 30.0%
TGAAGATTCTTAACAAACTC+AGG + chr8_2:14162445-14162464 None:intergenic 30.0%
!! TTATTTTGTTGGCATCATAG+TGG - chr8_2:14162555-14162574 Msa1235880:intron 30.0%
! TATTTTGTTGGCATCATAGT+GGG - chr8_2:14162556-14162575 Msa1235880:intron 30.0%
CAATTACTTTCACTTGTAAC+AGG - chr8_2:14162742-14162761 Msa1235880:intron 30.0%
GTTCTTGAGTTAATAGGAAT+TGG - chr8_2:14162794-14162813 Msa1235880:intron 30.0%
TTAATAGGAATTGGTTACAC+TGG - chr8_2:14162803-14162822 Msa1235880:intron 30.0%
TAATAGGAATTGGTTACACT+GGG - chr8_2:14162804-14162823 Msa1235880:intron 30.0%
!!! AATATCGCGTATTTGGTTTT+TGG - chr8_2:14162876-14162895 Msa1235880:intron 30.0%
!!! TGTTTTTTAAAATGATCCCC+AGG - chr8_2:14162942-14162961 Msa1235880:intron 30.0%
GCATCAAGTGAAATAATGTT+GGG + chr8_2:14163085-14163104 None:intergenic 30.0%
TGCATCAAGTGAAATAATGT+TGG + chr8_2:14163086-14163105 None:intergenic 30.0%
! ACTTGATGCATTGATATACA+TGG - chr8_2:14163096-14163115 Msa1235880:intron 30.0%
AATAGTATTTGACATGAAGG+GGG + chr8_2:14163180-14163199 None:intergenic 30.0%
CAATAGTATTTGACATGAAG+GGG + chr8_2:14163181-14163200 None:intergenic 30.0%
CACAATAGTATTTGACATGA+AGG + chr8_2:14163183-14163202 None:intergenic 30.0%
ATGTCAAATACTATTGTGCT+TGG - chr8_2:14163185-14163204 Msa1235880:intron 30.0%
!!! TTTGCGGTTTTATTTTGGAT+CGG + chr8_2:14163238-14163257 None:intergenic 30.0%
CGCAAAAAACCGAATATATT+TGG - chr8_2:14163280-14163299 Msa1235880:intron 30.0%
CAAACGCATCCAAATATATT+CGG + chr8_2:14163292-14163311 None:intergenic 30.0%
TTTGTAAAAACCGCTAAGAT+CGG - chr8_2:14163319-14163338 Msa1235880:intron 30.0%
CACAAACACGGTAAAATAAT+AGG + chr8_2:14163583-14163602 None:intergenic 30.0%
!!! GTTTAATTTGGATCGGTTTT+TGG + chr8_2:14163681-14163700 None:intergenic 30.0%
!! ATATGCGGTTTAATTTGGAT+CGG + chr8_2:14163688-14163707 None:intergenic 30.0%
TAAACCGCATATATTTGGAT+CGG - chr8_2:14163696-14163715 Msa1235880:intron 30.0%
AATAAAAATCACATGCGGTT+CGG + chr8_2:14163761-14163780 None:intergenic 30.0%
!! ACCGCATGTGATTTTTATTT+TGG - chr8_2:14163762-14163781 Msa1235880:intron 30.0%
AATAGTATTTGACATGAAGG+GGG + chr8_2:14163180-14163199 None:intergenic 30.0%
CAATAGTATTTGACATGAAG+GGG + chr8_2:14163181-14163200 None:intergenic 30.0%
CACAATAGTATTTGACATGA+AGG + chr8_2:14163183-14163202 None:intergenic 30.0%
ATGTCAAATACTATTGTGCT+TGG - chr8_2:14163185-14163204 Msa1235880:intron 30.0%
AATATCGGACTCTATCTATA+AGG + chr8_2:14163930-14163949 None:intergenic 30.0%
AAGAAAACCCTAGAAATTAC+TGG + chr8_2:14164079-14164098 None:intergenic 30.0%
!! TAGGAGGTATTATTCATCTT+TGG - chr8_2:14164250-14164269 Msa1235880:three_prime_UTR 30.0%
ACAAATTATGCATACCTTTC+TGG + chr8_2:14164356-14164375 None:intergenic 30.0%
CTGAAATAATTGGGAGTTAA+AGG - chr8_2:14164514-14164533 Msa1235880:intron 30.0%
TAATTGGGAGTTAAAGGAAT+TGG - chr8_2:14164520-14164539 Msa1235880:intron 30.0%
! TTTCATCAGGATTCATTTTG+TGG - chr8_2:14164600-14164619 Msa1235880:intron 30.0%
AAATTACATGGGATAAGGTT+TGG + chr8_2:14164641-14164660 None:intergenic 30.0%
TCAATCATCTTTAGTGCATA+AGG - chr8_2:14164729-14164748 Msa1235880:intron 30.0%
! TTTAGTGCATAAGGACATTT+TGG - chr8_2:14164738-14164757 Msa1235880:intron 30.0%
!! CATGATTCTGAGACAACAAA+GGG + chr8_2:14162091-14162110 None:intergenic 35.0%
!! GACGGTTCATATTTTAAGCT+CGG + chr8_2:14162241-14162260 None:intergenic 35.0%
! TGGATGTAATTTGGAATCGT+CGG + chr8_2:14162274-14162293 None:intergenic 35.0%
CTTGATATTACCTAGGATGA+AGG - chr8_2:14162319-14162338 Msa1235880:three_prime_UTR 35.0%
AAAGATTGCTCGTGATGTTA+TGG - chr8_2:14162372-14162391 Msa1235880:intron 35.0%
CAAGAAGCTGTATGATTCAT+AGG - chr8_2:14162463-14162482 Msa1235880:intron 35.0%
! TAAATATGCAGTGGGTTCAT+TGG - chr8_2:14162592-14162611 Msa1235880:intron 35.0%
TAGCTAGTGTATTTGCACTA+TGG - chr8_2:14162618-14162637 Msa1235880:intron 35.0%
AATAGGAATTGGTTACACTG+GGG - chr8_2:14162805-14162824 Msa1235880:intron 35.0%
AACCAAATACGCGATATTTG+CGG + chr8_2:14162874-14162893 None:intergenic 35.0%
! GCATTGATATACATGGTTGA+TGG - chr8_2:14163103-14163122 Msa1235880:intron 35.0%
GCCTTATACACTATTCAATG+CGG - chr8_2:14163130-14163149 Msa1235880:intron 35.0%
CCTTATACACTATTCAATGC+GGG - chr8_2:14163131-14163150 Msa1235880:intron 35.0%
ATAGTATTTGACATGAAGGG+GGG + chr8_2:14163179-14163198 None:intergenic 35.0%
!!! GGTTTTATTTTGGATCGGTT+TGG + chr8_2:14163233-14163252 None:intergenic 35.0%
!!! ATCGGTTTGCGGTTTTATTT+TGG + chr8_2:14163243-14163262 None:intergenic 35.0%
!!! GGTTTTCGGTTTTTTTGGAT+CGG + chr8_2:14163261-14163280 None:intergenic 35.0%
! TTTGCGGTTTTCGGTTTTTT+TGG + chr8_2:14163266-14163285 None:intergenic 35.0%
!!! ATTCGGTTTTTTGCGGTTTT+CGG + chr8_2:14163275-14163294 None:intergenic 35.0%
CGAATATATTTGGATGCGTT+TGG - chr8_2:14163290-14163309 Msa1235880:intron 35.0%
!!! TTTATTTTTGCGGTTCGGTT+CGG + chr8_2:14163382-14163401 None:intergenic 35.0%
ATAGTATTTGACATGAAGGG+GGG + chr8_2:14163179-14163198 None:intergenic 35.0%
! TGGTGCATTGACATATAGAT+AGG - chr8_2:14163876-14163895 Msa1235880:intron 35.0%
! GGTGCATTGACATATAGATA+GGG - chr8_2:14163877-14163896 Msa1235880:intron 35.0%
! GTGCATTGACATATAGATAG+GGG - chr8_2:14163878-14163897 Msa1235880:intron 35.0%
GGATGACCTTATAGAAGATA+GGG - chr8_2:14163899-14163918 Msa1235880:intron 35.0%
GATGACCTTATAGAAGATAG+GGG - chr8_2:14163900-14163919 Msa1235880:intron 35.0%
GCTTTCTTGAGATGGTATTT+AGG + chr8_2:14164107-14164126 None:intergenic 35.0%
ATCAAATGGCTTTCTTGAGA+TGG + chr8_2:14164115-14164134 None:intergenic 35.0%
TTCTATATTTCACCTTGCAG+TGG - chr8_2:14164303-14164322 Msa1235880:intron 35.0%
AACATCCTCAATGGAATAAC+AGG - chr8_2:14164457-14164476 Msa1235880:CDS 35.0%
ACATCCTCAATGGAATAACA+GGG - chr8_2:14164458-14164477 Msa1235880:CDS 35.0%
! AGGAATTGGACATTCTAAGA+TGG - chr8_2:14164534-14164553 Msa1235880:intron 35.0%
! AGGTTTGGTCAAAAAGCTTA+TGG + chr8_2:14164626-14164645 None:intergenic 35.0%
TGGTGCAATAAAACCTATCA+TGG - chr8_2:14164758-14164777 Msa1235880:intron 35.0%
CAATAAAACCTATCATGGCA+TGG - chr8_2:14164763-14164782 Msa1235880:intron 35.0%
ACTGGACTTGCATAACATTA+TGG - chr8_2:14164834-14164853 Msa1235880:CDS 35.0%
TGTCACATGACATAGTCAAT+CGG - chr8_2:14164864-14164883 Msa1235880:CDS 35.0%
CAGAGAAGAAGAGGAGATTA+AGG + chr8_2:14161970-14161989 None:intergenic 40.0%
CTTAATCTCCTCTTCTTCTC+TGG - chr8_2:14161968-14161987 Msa1235880:three_prime_UTR 40.0%
!! GCATGATTCTGAGACAACAA+AGG + chr8_2:14162092-14162111 None:intergenic 40.0%
TCGACTACACTTACAATGAG+TGG + chr8_2:14162123-14162142 None:intergenic 40.0%
ATCGTCGGATGAAGATTAGA+CGG + chr8_2:14162259-14162278 None:intergenic 40.0%
! TCTAGGGCTTGATATTACCT+AGG - chr8_2:14162312-14162331 Msa1235880:three_prime_UTR 40.0%
TGCTCGTGATGTTATGGTAA+TGG - chr8_2:14162378-14162397 Msa1235880:intron 40.0%
!! GATGTTATGGTAATGGCAAC+AGG - chr8_2:14162385-14162404 Msa1235880:intron 40.0%
TCAGTTGAGTCAACTTCTGT+TGG + chr8_2:14162418-14162437 None:intergenic 40.0%
GATAGACTTCCTTTGATTCC+TGG - chr8_2:14162770-14162789 Msa1235880:intron 40.0%
TCAAGAACTCCAGGAATCAA+AGG + chr8_2:14162782-14162801 None:intergenic 40.0%
CCTATTAACTCAAGAACTCC+AGG + chr8_2:14162791-14162810 None:intergenic 40.0%
CCTGGAGTTCTTGAGTTAAT+AGG - chr8_2:14162788-14162807 Msa1235880:intron 40.0%
ACCAAATACGCGATATTTGC+GGG + chr8_2:14162873-14162892 None:intergenic 40.0%
TATCAGCTTAAATGGACCTG+GGG + chr8_2:14162961-14162980 None:intergenic 40.0%
CTATCAGCTTAAATGGACCT+GGG + chr8_2:14162962-14162981 None:intergenic 40.0%
!! GATATACATGGTTGATGGTC+AGG - chr8_2:14163108-14163127 Msa1235880:intron 40.0%
CCCGCATTGAATAGTGTATA+AGG + chr8_2:14163134-14163153 None:intergenic 40.0%
TAGTATTTGACATGAAGGGG+GGG + chr8_2:14163178-14163197 None:intergenic 40.0%
!! TATTGTGCTTGGTGTACACT+AGG - chr8_2:14163196-14163215 Msa1235880:intron 40.0%
!! ATTGTGCTTGGTGTACACTA+GGG - chr8_2:14163197-14163216 Msa1235880:intron 40.0%
!!! GGTTTTTTTGGATCGGTTTG+CGG + chr8_2:14163254-14163273 None:intergenic 40.0%
AAAAACCGCTAAGATCGGAT+CGG - chr8_2:14163324-14163343 Msa1235880:intron 40.0%
CGAACCGATCCAAATATATG+CGG + chr8_2:14163703-14163722 None:intergenic 40.0%
CGCATATATTTGGATCGGTT+CGG - chr8_2:14163701-14163720 Msa1235880:intron 40.0%
!! ATATTTGGATCGGTTCGGTT+CGG - chr8_2:14163706-14163725 Msa1235880:intron 40.0%
TAGTATTTGACATGAAGGGG+GGG + chr8_2:14163178-14163197 None:intergenic 40.0%
GGGATGACCTTATAGAAGAT+AGG - chr8_2:14163898-14163917 Msa1235880:intron 40.0%
GTCATCCCCTATCTTCTATA+AGG + chr8_2:14163908-14163927 None:intergenic 40.0%
!! ACGTAGTTTTCAAGCCAGAA+AGG - chr8_2:14164339-14164358 Msa1235880:intron 40.0%
AGAGACACAAGTACTACTCA+GGG + chr8_2:14164436-14164455 None:intergenic 40.0%
TAGAGACACAAGTACTACTC+AGG + chr8_2:14164437-14164456 None:intergenic 40.0%
GTGTCTCTAAACATCCTCAA+TGG - chr8_2:14164448-14164467 Msa1235880:CDS 40.0%
TCTTCCCTGTTATTCCATTG+AGG + chr8_2:14164465-14164484 None:intergenic 40.0%
GGACTTGCATAACATTATGG+CGG - chr8_2:14164837-14164856 Msa1235880:CDS 40.0%
GACTTGCATAACATTATGGC+GGG - chr8_2:14164838-14164857 Msa1235880:CDS 40.0%
GGATATAGCCAGAGAAGAAG+AGG + chr8_2:14161979-14161998 None:intergenic 45.0%
ATCAAAGAGGCTGGATGAAG+AGG + chr8_2:14162000-14162019 None:intergenic 45.0%
ATCCAGCCTCTTTGATTGCA+AGG - chr8_2:14162004-14162023 Msa1235880:three_prime_UTR 45.0%
AAGGAGCCTTGCAATCAAAG+AGG + chr8_2:14162013-14162032 None:intergenic 45.0%
TGAGACAACAAAGGGAGTGA+TGG + chr8_2:14162083-14162102 None:intergenic 45.0%
!!! GAGCTCAGCTGGTTTTATCT+CGG - chr8_2:14162640-14162659 Msa1235880:intron 45.0%
CCAAATACGCGATATTTGCG+GGG + chr8_2:14162872-14162891 None:intergenic 45.0%
CCTATCAGCTTAAATGGACC+TGG + chr8_2:14162963-14162982 None:intergenic 45.0%
CCAGGTCCATTTAAGCTGAT+AGG - chr8_2:14162960-14162979 Msa1235880:intron 45.0%
GGTCCATTTAAGCTGATAGG+TGG - chr8_2:14162963-14162982 Msa1235880:intron 45.0%
CTGCCACCTATCAGCTTAAA+TGG + chr8_2:14162969-14162988 None:intergenic 45.0%
ACACTATTCAATGCGGGACT+TGG - chr8_2:14163137-14163156 Msa1235880:intron 45.0%
!! TTGTGCTTGGTGTACACTAG+GGG - chr8_2:14163198-14163217 Msa1235880:intron 45.0%
GAAATCCGATCCGATCTTAG+CGG + chr8_2:14163332-14163351 None:intergenic 45.0%
GCTAAGATCGGATCGGATTT+CGG - chr8_2:14163331-14163350 Msa1235880:intron 45.0%
!! AAATCACATGCGGTTCGGTT+CGG + chr8_2:14163756-14163775 None:intergenic 45.0%
CTTGTATGCAAACCACTGCA+AGG + chr8_2:14164318-14164337 None:intergenic 45.0%
GAGACACAAGTACTACTCAG+GGG + chr8_2:14164435-14164454 None:intergenic 45.0%
! AAAAGTAGGCCCTTAGCCTT+AGG - chr8_2:14164793-14164812 Msa1235880:CDS 45.0%
AGCCTTGCAATCAAAGAGGC+TGG + chr8_2:14162009-14162028 None:intergenic 50.0%
GTGGAAAGGCTCACACATTG+TGG + chr8_2:14162056-14162075 None:intergenic 50.0%
! GGAGTGATGGAAGTGTGGAA+AGG + chr8_2:14162070-14162089 None:intergenic 50.0%
! CAAAGGGAGTGATGGAAGTG+TGG + chr8_2:14162075-14162094 None:intergenic 50.0%
TTTGCACTATGGAGCTCAGC+TGG - chr8_2:14162629-14162648 Msa1235880:intron 50.0%
CCCCGCAAATATCGCGTATT+TGG - chr8_2:14162869-14162888 Msa1235880:intron 50.0%
!!! TTTTGCGGTTCGGTTCGGTT+TGG + chr8_2:14163377-14163396 None:intergenic 50.0%
!! TGCGGTTTGGATCGGTTTTG+AGG + chr8_2:14163804-14163823 None:intergenic 50.0%
TGCTTGGACCATGCCATGAT+AGG + chr8_2:14164774-14164793 None:intergenic 50.0%
GGCATGGTCCAAGCAAAAGT+AGG - chr8_2:14164779-14164798 Msa1235880:intron 50.0%
!! GCTAAGGGCCTACTTTTGCT+TGG + chr8_2:14164790-14164809 None:intergenic 50.0%
TTGAGCCAGCCTAAGGCTAA+GGG + chr8_2:14164805-14164824 None:intergenic 50.0%
TGTTATGCAAGTCCAGTCCC+TGG + chr8_2:14164831-14164850 None:intergenic 50.0%
!! CGGTTCGGTTCGGTTTGGTT+CGG + chr8_2:14163372-14163391 None:intergenic 55.0%
!! ACATGCGGTTCGGTTCGGTT+TGG + chr8_2:14163751-14163770 None:intergenic 55.0%
!! GTGTACACTAGGGGTGTTCG+CGG + chr8_2:14163827-14163846 None:intergenic 55.0%
! TGAAGGGGGGGTGTACACTA+GGG + chr8_2:14163837-14163856 None:intergenic 55.0%
! ATGAAGGGGGGGTGTACACT+AGG + chr8_2:14163838-14163857 None:intergenic 55.0%
CTTGAGCCAGCCTAAGGCTA+AGG + chr8_2:14164806-14164825 None:intergenic 55.0%
! TTAGGCTGGCTCAAGAGCCA+GGG - chr8_2:14164811-14164830 Msa1235880:CDS 55.0%
! GTTCGCGGTGCGGTTTGGAT+CGG + chr8_2:14163812-14163831 None:intergenic 60.0%
! GAAGGGGGGGTGTACACTAG+GGG + chr8_2:14163836-14163855 None:intergenic 60.0%
!! GTAGGCCCTTAGCCTTAGGC+TGG - chr8_2:14164797-14164816 Msa1235880:CDS 60.0%
! CTGGCTCTTGAGCCAGCCTA+AGG + chr8_2:14164812-14164831 None:intergenic 60.0%
! CTTAGGCTGGCTCAAGAGCC+AGG - chr8_2:14164810-14164829 Msa1235880:CDS 60.0%
!! CACTAGGGGTGTTCGCGGTG+CGG + chr8_2:14163822-14163841 None:intergenic 65.0%
CTGGCTCAAGAGCCAGGGAC+TGG - chr8_2:14164816-14164835 Msa1235880:CDS 65.0%
! GGGGTGTTCGCGGTGCGGTT+TGG + chr8_2:14163817-14163836 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 14161963 14164888 14161963 ID=Msa1235880;Name=Msa1235880
chr8_2 mRNA 14161963 14164888 14161963 ID=Msa1235880-mRNA-1;Parent=Msa1235880;Name=Msa1235880-mRNA-1;_AED=0.18;_eAED=0.19;_QI=0|0.8|0.83|1|0.4|0.5|6|605|68
chr8_2 exon 14161963 14162372 14161963 ID=Msa1235880-mRNA-1:exon:5422;Parent=Msa1235880-mRNA-1
chr8_2 exon 14162491 14162528 14162491 ID=Msa1235880-mRNA-1:exon:5421;Parent=Msa1235880-mRNA-1
chr8_2 exon 14164025 14164087 14164025 ID=Msa1235880-mRNA-1:exon:5420;Parent=Msa1235880-mRNA-1
chr8_2 exon 14164190 14164276 14164190 ID=Msa1235880-mRNA-1:exon:5419;Parent=Msa1235880-mRNA-1
chr8_2 exon 14164367 14164483 14164367 ID=Msa1235880-mRNA-1:exon:5418;Parent=Msa1235880-mRNA-1
chr8_2 exon 14164792 14164888 14164792 ID=Msa1235880-mRNA-1:exon:5417;Parent=Msa1235880-mRNA-1
chr8_2 CDS 14164792 14164888 14164792 ID=Msa1235880-mRNA-1:cds;Parent=Msa1235880-mRNA-1
chr8_2 CDS 14164374 14164483 14164374 ID=Msa1235880-mRNA-1:cds;Parent=Msa1235880-mRNA-1
chr8_2 three_prime_UTR 14164367 14164373 14164367 ID=Msa1235880-mRNA-1:three_prime_utr;Parent=Msa1235880-mRNA-1
chr8_2 three_prime_UTR 14164190 14164276 14164190 ID=Msa1235880-mRNA-1:three_prime_utr;Parent=Msa1235880-mRNA-1
chr8_2 three_prime_UTR 14164025 14164087 14164025 ID=Msa1235880-mRNA-1:three_prime_utr;Parent=Msa1235880-mRNA-1
chr8_2 three_prime_UTR 14162491 14162528 14162491 ID=Msa1235880-mRNA-1:three_prime_utr;Parent=Msa1235880-mRNA-1
chr8_2 three_prime_UTR 14161963 14162372 14161963 ID=Msa1235880-mRNA-1:three_prime_utr;Parent=Msa1235880-mRNA-1
Gene Sequence

>Msa1235880

ATGGCCTTAATCTCCTCTTCTTCTCTGGCTATATCCTCTTCATCCAGCCTCTTTGATTGCAAGGCTCCTTTTCAATCATTAGCTTCTTCTCCACAATATCGAAAGATTGCTCGTGATGTTATGGTAATGGCAACAGGAGATGCACCAACAGAAGTTGACTCAACTGAGCTACCTGAGTTTGTTAAGAATCTTCAAGAAGCTGTATGA

Protein sequence

>Msa1235880

MALISSSSLAISSSSSLFDCKAPFQSLASSPQYRKIARDVMVMATGDAPTEVDSTELPEFVKNLQEAV*