AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1449320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1449320 MtrunA17_Chr1g0210971 99.482 386 2 0 1 386 1 386 0.0 792
Msa1449320 MtrunA17_Chr4g0004681 33.448 290 166 5 60 349 43 305 1.63e-39 142
Msa1449320 MtrunA17_Chr4g0004711 33.798 287 160 7 66 349 49 308 5.44e-39 141
Msa1449320 MtrunA17_Chr4g0004721 32.990 291 169 6 60 349 44 309 1.69e-37 137
Msa1449320 MtrunA17_Chr4g0000511 34.228 298 173 7 50 346 117 392 3.53e-35 136
Msa1449320 MtrunA17_Chr1g0208141 33.564 289 162 8 63 346 96 359 1.30e-29 120
Msa1449320 MtrunA17_Chr4g0004741 32.990 291 169 7 60 349 43 308 5.57e-27 109
Msa1449320 MtrunA17_Chr8g0351141 27.344 256 166 2 94 349 86 321 6.98e-27 109
Msa1449320 MtrunA17_Chr8g0351121 27.419 248 157 4 94 340 120 345 1.33e-26 108
Msa1449320 MtrunA17_Chr8g0351111 28.571 259 151 8 94 347 83 312 2.41e-26 107
Msa1449320 MtrunA17_Chr2g0331641 29.771 262 157 3 91 349 72 309 6.62e-25 103
Msa1449320 MtrunA17_Chr6g0450811 26.809 235 151 6 94 325 129 345 2.70e-11 64.7
Msa1449320 MtrunA17_Chr7g0248631 24.364 275 181 7 100 365 88 344 6.59e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1449320 AT1G68010.1 88.860 386 43 0 1 386 1 386 0.0 697
Msa1449320 AT1G68010.2 88.630 387 43 1 1 386 1 387 0.0 692
Msa1449320 AT1G68010.3 90.909 341 31 0 1 341 1 341 0.0 625
Msa1449320 AT4G34200.1 34.737 285 164 6 63 346 102 365 7.37e-34 132
Msa1449320 AT1G17745.1 32.558 344 192 11 10 346 76 386 1.41e-33 132
Msa1449320 AT1G79870.1 31.373 306 172 8 45 346 34 305 7.87e-33 125
Msa1449320 AT3G19480.1 33.221 298 176 7 50 346 75 350 1.71e-30 123
Msa1449320 AT1G17745.2 30.435 368 195 11 10 346 76 413 6.95e-29 119
Msa1449320 AT1G79870.2 29.180 305 161 7 45 346 34 286 6.75e-27 108
Msa1449320 AT1G12550.1 27.413 259 163 5 94 350 82 317 8.61e-26 106
Msa1449320 AT2G45630.2 25.723 311 201 6 39 347 45 327 1.06e-23 100
Msa1449320 AT1G72190.1 26.966 267 173 8 88 349 117 366 1.71e-15 77.8

Find 134 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGATTAGCATCGATTTAA+TGG 0.180188 tig0032509:-20666 Msa1449320:three_prime_UTR
TGTATCCATCCTCACTTATA+AGG 0.250595 tig0032509:-20619 Msa1449320:three_prime_UTR
TGATGATGTGTAGAGGATTT+TGG 0.254421 tig0032509:+24826 None:intergenic
TCACATTAACTTCAAATAAA+AGG 0.263913 tig0032509:-24851 Msa1449320:five_prime_UTR
AGCATATGGTGCTTTCTTAA+AGG 0.276108 tig0032509:-22399 Msa1449320:CDS
CTTGCATTCTTCTGATCTAA+TGG 0.300930 tig0032509:+20940 None:intergenic
AACCAGTTTCAATTCAAGTA+TGG 0.311416 tig0032509:-24620 Msa1449320:CDS
GTTGTAGTTTATTGAGCAAT+TGG 0.320233 tig0032509:-20715 Msa1449320:three_prime_UTR
CATGAGGTGCTGAGATAGAT+AGG 0.331224 tig0032509:+24880 None:intergenic
GATAAGTGTGATGGAGTTAT+TGG 0.337723 tig0032509:-24338 Msa1449320:CDS
AGGAAAAGTGTTAATAATAA+AGG 0.340766 tig0032509:-20826 Msa1449320:three_prime_UTR
TCTAAATTCATCCATTTCAT+TGG 0.349195 tig0032509:-24770 Msa1449320:five_prime_UTR
GTCAATGCTGCAAACAAATA+TGG 0.354110 tig0032509:-23747 Msa1449320:CDS
TTCCATACTTGAATTGAAAC+TGG 0.356787 tig0032509:+24618 None:intergenic
ATTGAGCAATTGGGAGAGTT+GGG 0.365636 tig0032509:-20705 Msa1449320:three_prime_UTR
AGGCAAAGCTTTCAGTAATA+TGG 0.369024 tig0032509:-23793 Msa1449320:CDS
GGACAAACAGTTGGTGTTAT+CGG 0.377915 tig0032509:-23113 Msa1449320:CDS
TTTCTGCTGTATCAGGTTGA+AGG 0.378719 tig0032509:-22565 Msa1449320:intron
CAAGCTTTGAAGGCTCTTGT+AGG 0.382688 tig0032509:+21130 None:intergenic
TATGCACACACAAGCTTTGA+AGG 0.385122 tig0032509:+21120 None:intergenic
AACTCTAACCTTCTTCATCT+TGG 0.389875 tig0032509:+22149 None:intergenic
TTCTCTGCTTTGAGCAAAGC+AGG 0.391693 tig0032509:-23816 Msa1449320:CDS
TGTTTATCTGGCAGATTTGT+TGG 0.395143 tig0032509:-23149 Msa1449320:intron
AGATTGATCCAACGAGTTCC+AGG 0.398695 tig0032509:+24555 None:intergenic
GATTAGTCTTCATCCTATCT+TGG 0.399037 tig0032509:-22211 Msa1449320:CDS
CAGTATGGTTTGATGCCAAT+AGG 0.402824 tig0032509:-21376 Msa1449320:CDS
GTTATCGGAGCTGGCCGTAT+TGG 0.403616 tig0032509:-23098 Msa1449320:CDS
TATGTTTCTGACCAATGAAA+TGG 0.405529 tig0032509:+24759 None:intergenic
AAGAAATGGCTCCACCCTAT+TGG 0.407299 tig0032509:+21361 None:intergenic
GGTAGAGATCGAAGTATATC+AGG 0.410543 tig0032509:+22530 None:intergenic
AAAACAAATTGTTCTTATTG+AGG 0.414112 tig0032509:-20891 Msa1449320:three_prime_UTR
AGATCAAGGGCTACCCAGTA+TGG 0.420729 tig0032509:-21391 Msa1449320:CDS
CTATTGGCATCAAACCATAC+TGG 0.422550 tig0032509:+21377 None:intergenic
CGTAGGCCTTGATGTGTTTG+AGG 0.424117 tig0032509:-21952 Msa1449320:intron
ATACACTACAGCTTTGAAAC+TGG 0.431086 tig0032509:+21174 None:intergenic
TTCTTCAACTCTGCAAGTCC+AGG 0.432293 tig0032509:+21825 None:intergenic
TATTGAGCAATTGGGAGAGT+TGG 0.433084 tig0032509:-20706 Msa1449320:three_prime_UTR
TTCTTACTATATCTGCCTCT+TGG 0.435870 tig0032509:+22321 None:intergenic
TTGTAGTTTATTGAGCAATT+GGG 0.437297 tig0032509:-20714 Msa1449320:three_prime_UTR
GATGAGTTGATGTAACGTTT+AGG 0.441252 tig0032509:+24911 None:intergenic
TGACTTTGGCAGCTGCTAGA+AGG 0.446003 tig0032509:-23368 Msa1449320:CDS
GCTTGCAGCTTCACTGACTT+TGG 0.451429 tig0032509:-23382 Msa1449320:CDS
GAAGATATCATTGCTTTGAT+TGG 0.457462 tig0032509:-24362 Msa1449320:CDS
ACAATGCTTGGGCATGCAGC+TGG 0.459559 tig0032509:+21320 None:intergenic
GGTGCTTTCTTAAAGGCAAA+TGG 0.460883 tig0032509:-22392 Msa1449320:CDS
ACTTCAAAAGTACATAAATC+AGG 0.460989 tig0032509:-20846 Msa1449320:three_prime_UTR
AGTGCAACTTCATCAATAAC+AGG 0.463873 tig0032509:+22008 None:intergenic
AAACACCAGTAACTTGGAAA+AGG 0.465743 tig0032509:-22367 Msa1449320:CDS
TATAATACAGGGCAAGATCA+AGG 0.470540 tig0032509:-21405 Msa1449320:intron
ACCTTGACTCACTGATTCAA+TGG 0.471925 tig0032509:-24646 Msa1449320:exon
CTTGTTGACGAGGTGGTAAG+TGG 0.472748 tig0032509:+22182 None:intergenic
AGTATGGTTTGATGCCAATA+GGG 0.473886 tig0032509:-21375 Msa1449320:CDS
ACACATTGCTTCTGCTTCCA+AGG 0.479271 tig0032509:-21787 Msa1449320:intron
AACAAATATGGTGTTGCTGT+TGG 0.490286 tig0032509:-23735 Msa1449320:CDS
TTGGAAAAGGGCAGCATCCA+TGG 0.493217 tig0032509:-22354 Msa1449320:CDS
ATGGTGAAACACCAGTAACT+TGG 0.493816 tig0032509:-22373 Msa1449320:CDS
TTCTGCTGTATCAGGTTGAA+GGG 0.494245 tig0032509:-22564 Msa1449320:intron
ATTCAAGTATGGAACCCAAA+TGG 0.502702 tig0032509:-24609 Msa1449320:CDS
GCTTTCAGTAATATGGCTGT+TGG 0.504769 tig0032509:-23786 Msa1449320:CDS
GCAAGTCCAGGTTTCATGTA+GGG 0.504842 tig0032509:+21837 None:intergenic
GTATCCATCCTCACTTATAA+GGG 0.511831 tig0032509:-20618 Msa1449320:three_prime_UTR
CGAGTCTTTCCTTGTTGACG+AGG 0.512210 tig0032509:+22172 None:intergenic
ACAGTTGGTGTTATCGGAGC+TGG 0.526985 tig0032509:-23107 Msa1449320:CDS
GCAGATGAGTTCATGAGGGC+AGG 0.528261 tig0032509:-23336 Msa1449320:CDS
GCAGTGGACTCGTGAGGGAA+TGG 0.533885 tig0032509:-21547 Msa1449320:intron
ATCCTCACTTATAAGGGAGG+AGG 0.534862 tig0032509:-20612 Msa1449320:three_prime_UTR
TAATGGTAGAATGTAGTATG+AGG 0.538024 tig0032509:-20649 Msa1449320:three_prime_UTR
AACACCAGTAACTTGGAAAA+GGG 0.538959 tig0032509:-22366 Msa1449320:CDS
TTGCATAAGCTGATCCAATA+CGG 0.539584 tig0032509:+23084 None:intergenic
TCAAGGCCTACGCGAAACAT+TGG 0.540440 tig0032509:+21963 None:intergenic
AAAGCTGTAGTGTATGCGTA+CGG 0.544002 tig0032509:-21166 Msa1449320:exon
GTAGTAGTGATTGAGTGATT+CGG 0.548176 tig0032509:+24713 None:intergenic
TGCAAGTCCAGGTTTCATGT+AGG 0.550331 tig0032509:+21836 None:intergenic
CTCTTGGAGAACCTCGTCCA+TGG 0.559767 tig0032509:+22337 None:intergenic
GTCTTTCCTTGTTGACGAGG+TGG 0.560436 tig0032509:+22175 None:intergenic
TCCTCACTTATAAGGGAGGA+GGG 0.561330 tig0032509:-20611 Msa1449320:three_prime_UTR
GCTAGCAGCTCTAAATGTGC+TGG 0.561333 tig0032509:-21520 Msa1449320:intron
AAGCTGTAGTGTATGCGTAC+GGG 0.565234 tig0032509:-21165 Msa1449320:exon
GTGTGATGGAGTTATTGGAC+AGG 0.566011 tig0032509:-24333 Msa1449320:intron
CAATTACCTCAAACACATCA+AGG 0.566746 tig0032509:+21946 None:intergenic
TCCTCCCTTATAAGTGAGGA+TGG 0.567206 tig0032509:+20614 None:intergenic
GGGCAGGATTATATGATGGC+TGG 0.567472 tig0032509:-23320 Msa1449320:CDS
TATTGATGAAGTTGCACTTG+TGG 0.567753 tig0032509:-22003 Msa1449320:CDS
AGTCAAGAAAGAACATGTAA+AGG 0.568166 tig0032509:-20737 Msa1449320:three_prime_UTR
CACTTACCACCTCGTCAACA+AGG 0.569943 tig0032509:-22181 Msa1449320:CDS
ATGAGGTGCTGAGATAGATA+GGG 0.570501 tig0032509:+24881 None:intergenic
ATTCTTATAAACTGCAGTAG+AGG 0.572235 tig0032509:-22032 Msa1449320:CDS
GTTAGCACAAAATCAATGCC+TGG 0.572324 tig0032509:-24573 Msa1449320:CDS
ATTTGTTGGAAACTTGCTCA+AGG 0.580236 tig0032509:-23135 Msa1449320:CDS
GCCATTGAATCAGTGAGTCA+AGG 0.580492 tig0032509:+24645 None:intergenic
ATGAGGGCAGGATTATATGA+TGG 0.580751 tig0032509:-23324 Msa1449320:CDS
TTTGCAGCTGACTGAAGACT+GGG 0.581414 tig0032509:-23850 Msa1449320:intron
ATCAGCTTATGCAAGAATGA+TGG 0.584719 tig0032509:-23075 Msa1449320:intron
AGACTAGAAAAGTTTGTCAC+AGG 0.585130 tig0032509:-22499 Msa1449320:intron
TTATTGAATTCAGATATGTA+CGG 0.587056 tig0032509:-24408 Msa1449320:intron
GAATACTTTAAAATAAAATG+AGG 0.587157 tig0032509:-21001 Msa1449320:three_prime_UTR
AATCAATGCCTGGAACTCGT+TGG 0.587209 tig0032509:-24563 Msa1449320:CDS
TTGATTGGTGATAAGTGTGA+TGG 0.588494 tig0032509:-24347 Msa1449320:CDS
GGGAGTTCTCACAGAGACTA+CGG 0.589946 tig0032509:-23409 Msa1449320:CDS
TTTGTTGGAAACTTGCTCAA+GGG 0.594105 tig0032509:-23134 Msa1449320:CDS
GATGAGCCCTACATGAAACC+TGG 0.594414 tig0032509:-21843 Msa1449320:CDS
ATAATACAGGGCAAGATCAA+GGG 0.598270 tig0032509:-21404 Msa1449320:intron
TATTTGAAGTTAATGTGAGG+AGG 0.600109 tig0032509:+24856 None:intergenic
AAGACTCGCCAAGATGAAGA+AGG 0.601821 tig0032509:-22157 Msa1449320:intron
TTGCTCAAGGGACAAACAGT+TGG 0.607085 tig0032509:-23122 Msa1449320:CDS
TATTGGCATCAAACCATACT+GGG 0.608430 tig0032509:+21378 None:intergenic
TGAGGTGCTGAGATAGATAG+GGG 0.608999 tig0032509:+24882 None:intergenic
ACAAAGTGCAGTGTTGATGA+CGG 0.610784 tig0032509:-20803 Msa1449320:three_prime_UTR
AGCTTGTGTGTGCATACTGA+TGG 0.614699 tig0032509:-21113 Msa1449320:three_prime_UTR
TTGAGGCAGATGAGTTCATG+AGG 0.619999 tig0032509:-23341 Msa1449320:CDS
AAGGGCAGCATCCATGGACG+AGG 0.621564 tig0032509:-22348 Msa1449320:CDS
CCTCACTTATAAGGGAGGAG+GGG 0.621943 tig0032509:-20610 Msa1449320:three_prime_UTR
TCCATCCTCACTTATAAGGG+AGG 0.634904 tig0032509:-20615 Msa1449320:three_prime_UTR
CCCCTCCTCCCTTATAAGTG+AGG 0.635596 tig0032509:+20610 None:intergenic
GAAAATCCAATGTTTCGCGT+AGG 0.638637 tig0032509:-21969 Msa1449320:CDS
AGCTGCTAGAAGGATAGTTG+AGG 0.641144 tig0032509:-23358 Msa1449320:CDS
ATGGTTTGATGCCAATAGGG+TGG 0.649631 tig0032509:-21372 Msa1449320:CDS
TGAGGCAGATGAGTTCATGA+GGG 0.651617 tig0032509:-23340 Msa1449320:CDS
AGTGATTCGGTGTGAAACAG+TGG 0.663359 tig0032509:+24726 None:intergenic
TCTGCTTTGAGCAAAGCAGG+AGG 0.664158 tig0032509:-23813 Msa1449320:CDS
CATGGACGAGGTTCTCCAAG+AGG 0.666582 tig0032509:-22336 Msa1449320:CDS
AGGTGCTGAGATAGATAGGG+GGG 0.671802 tig0032509:+24884 None:intergenic
ATGCTTGGGCATGCAGCTGG+AGG 0.674932 tig0032509:+21323 None:intergenic
CATGGAATGATGATGTGTAG+AGG 0.682056 tig0032509:+24819 None:intergenic
GTGTTTGCAGTGGACTCGTG+AGG 0.684941 tig0032509:-21553 Msa1449320:intron
TGTTTGCAGTGGACTCGTGA+GGG 0.684969 tig0032509:-21552 Msa1449320:intron
TTGTGTGTGCATACTGATGG+TGG 0.686507 tig0032509:-21110 Msa1449320:three_prime_UTR
AGCAATGTGTGGTACTACAA+CGG 0.690341 tig0032509:+21800 None:intergenic
GAGGTGCTGAGATAGATAGG+GGG 0.692466 tig0032509:+24883 None:intergenic
GCATACTGATGGTGGCAGTG+TGG 0.695956 tig0032509:-21102 Msa1449320:three_prime_UTR
ATTGAATCAGTGAGTCAAGG+TGG 0.706038 tig0032509:+24648 None:intergenic
GTTAATGTGAGGAGGACATG+AGG 0.707587 tig0032509:+24864 None:intergenic
TTGCAGCTGACTGAAGACTG+GGG 0.715483 tig0032509:-23849 Msa1449320:intron
TTGGAAGCAGAAGCAATGTG+TGG 0.717012 tig0032509:+21789 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTATTTTTAAATTAT+AGG - tig0032509:21272-21291 Msa1449320:intron 0.0%
!!! TTTTAAATTATAGGTTTTTT+TGG - tig0032509:21281-21300 Msa1449320:intron 10.0%
!!! CTAAATAACTATTTTTTTAT+TGG - tig0032509:21369-21388 Msa1449320:CDS 10.0%
!!! AGTTTAAATTTTAACATAAG+AGG - tig0032509:21547-21566 Msa1449320:intron 15.0%
!!! ATTTACATTTTAAATGTATG+TGG - tig0032509:21841-21860 Msa1449320:CDS 15.0%
!! TCATCATAAACTAAATTATT+AGG + tig0032509:23252-23271 None:intergenic 15.0%
!! TTAGAATTAAATTAAGTACA+GGG - tig0032509:23789-23808 Msa1449320:CDS 15.0%
!!! ATTTTATTTTAAAGTATTCC+TGG + tig0032509:24492-24511 None:intergenic 15.0%
!!! GAATACTTTAAAATAAAATG+AGG - tig0032509:24493-24512 Msa1449320:intron 15.0%
!!! TTTTATTTGAAGTTAATGTG+AGG + tig0032509:20644-20663 None:intergenic 20.0%
!! TCACATTAACTTCAAATAAA+AGG - tig0032509:20643-20662 Msa1449320:three_prime_UTR 20.0%
!! TTATTGAATTCAGATATGTA+CGG - tig0032509:21086-21105 Msa1449320:three_prime_UTR 20.0%
!! AATCTTAAGTAAAACAAGAA+AGG + tig0032509:22225-22244 None:intergenic 20.0%
!! AGTTGCTAATAAAAATTACT+TGG - tig0032509:22534-22553 Msa1449320:CDS 20.0%
!!! ATTCTAAGTTAACAGATTTT+TGG + tig0032509:22842-22861 None:intergenic 20.0%
!! ATCCATTTAAACAAATCATA+GGG + tig0032509:23026-23045 None:intergenic 20.0%
!! TATCCATTTAAACAAATCAT+AGG + tig0032509:23027-23046 None:intergenic 20.0%
!! ATTATTAGGAATGATCAAAT+GGG + tig0032509:23238-23257 None:intergenic 20.0%
!! AATTATTAGGAATGATCAAA+TGG + tig0032509:23239-23258 None:intergenic 20.0%
!!! ACCATGTGATTTTTTTTATT+AGG - tig0032509:23629-23648 Msa1449320:intron 20.0%
!! TCCTAATAAAAAAAATCACA+TGG + tig0032509:23633-23652 None:intergenic 20.0%
!! ATAACTAAAATTGATTACCT+TGG + tig0032509:23727-23746 None:intergenic 20.0%
!! CTTAGAATTAAATTAAGTAC+AGG - tig0032509:23788-23807 Msa1449320:CDS 20.0%
!!! TGTGAAAAGAATCTTTTTTT+AGG + tig0032509:23881-23900 None:intergenic 20.0%
!!! GTTTTATTTGCAACAATATT+TGG + tig0032509:24247-24266 None:intergenic 20.0%
!!! TATATTTTATTTCTAATCGC+AGG - tig0032509:24293-24312 Msa1449320:intron 20.0%
!!! TTATAATTTTCAATTGAACC+AGG - tig0032509:24471-24490 Msa1449320:intron 20.0%
!! AAAACAAATTGTTCTTATTG+AGG - tig0032509:24603-24622 Msa1449320:CDS 20.0%
!!! AGGAAAAGTGTTAATAATAA+AGG - tig0032509:24668-24687 Msa1449320:five_prime_UTR 20.0%
!!! TTTAGAAGACTTTGACTTTT+TGG + tig0032509:20710-20729 None:intergenic 25.0%
! TCTAAATTCATCCATTTCAT+TGG - tig0032509:20724-20743 Msa1449320:three_prime_UTR 25.0%
!!! TATGTGGTTTTTTTTACTTC+TGG - tig0032509:21307-21326 Msa1449320:CDS 25.0%
!!! ATGTGGTTTTTTTTACTTCT+GGG - tig0032509:21308-21327 Msa1449320:CDS 25.0%
! ATATTGTGAATCAAGAATAG+AGG - tig0032509:21472-21491 Msa1449320:intron 25.0%
! TATTGTGAATCAAGAATAGA+GGG - tig0032509:21473-21492 Msa1449320:intron 25.0%
! TTTAACATAAAAGCAACTCT+CGG - tig0032509:21586-21605 Msa1449320:intron 25.0%
!!! GAAGTTATTTGTTATAACCT+TGG - tig0032509:22036-22055 Msa1449320:CDS 25.0%
! TTCATATCATTCATTGTGTT+TGG - tig0032509:22060-22079 Msa1449320:intron 25.0%
!!! GTTTATTTTTCATACAGATG+AGG + tig0032509:22203-22222 None:intergenic 25.0%
!!! CAGTTTTGATTTTGTTTATC+TGG - tig0032509:22333-22352 Msa1449320:CDS 25.0%
! AATGCAAAACTGAAATGTAT+GGG + tig0032509:22452-22471 None:intergenic 25.0%
! GACTTGGCATAAAATTAAAA+CGG - tig0032509:22569-22588 Msa1449320:intron 25.0%
! AAAAAAAAAAGAGAAGCTAG+TGG - tig0032509:22745-22764 Msa1449320:intron 25.0%
! ATTGTCACGATATTCAAATT+TGG - tig0032509:22795-22814 Msa1449320:intron 25.0%
!!! TAAGTTAACAGATTTTTGGA+AGG + tig0032509:22838-22857 None:intergenic 25.0%
! TAATGATATATTCTTATCGC+AGG - tig0032509:23434-23453 Msa1449320:intron 25.0%
!!! GAAAAGAATCTTTTTTTAGG+TGG + tig0032509:23878-23897 None:intergenic 25.0%
! AATTTACATTGATCAAACGT+AGG + tig0032509:24033-24052 None:intergenic 25.0%
! GTGAAAAATGTTATTACTCA+GGG + tig0032509:24211-24230 None:intergenic 25.0%
!! ACTTCAAAAGTACATAAATC+AGG - tig0032509:24648-24667 Msa1449320:exon 25.0%
!! TGATGCATGTAATGAATTTT+AGG - tig0032509:24732-24751 Msa1449320:five_prime_UTR 25.0%
! TTGTAGTTTATTGAGCAATT+GGG - tig0032509:24780-24799 Msa1449320:five_prime_UTR 25.0%
! TATTTGAAGTTAATGTGAGG+AGG + tig0032509:20641-20660 None:intergenic 30.0%
! TATGTTTCTGACCAATGAAA+TGG + tig0032509:20738-20757 None:intergenic 30.0%
AACCAGTTTCAATTCAAGTA+TGG - tig0032509:20874-20893 Msa1449320:three_prime_UTR 30.0%
TTCCATACTTGAATTGAAAC+TGG + tig0032509:20879-20898 None:intergenic 30.0%
TTCTTTGTTGAGTCAATCAA+TGG - tig0032509:21041-21060 Msa1449320:three_prime_UTR 30.0%
GAAGATATCATTGCTTTGAT+TGG - tig0032509:21132-21151 Msa1449320:three_prime_UTR 30.0%
!!! TAGGTTTTTTTGGTTGTATG+TGG - tig0032509:21291-21310 Msa1449320:intron 30.0%
!!! TGTGGTTTTTTTTACTTCTG+GGG - tig0032509:21309-21328 Msa1449320:CDS 30.0%
ATTGTGAATCAAGAATAGAG+GGG - tig0032509:21474-21493 Msa1449320:intron 30.0%
! ATGTACTAAAGTGTTTATCG+AGG - tig0032509:21519-21538 Msa1449320:intron 30.0%
TTAACATAAAAGCAACTCTC+GGG - tig0032509:21587-21606 Msa1449320:intron 30.0%
TGTTAGTGTCAAAATGATAC+AGG + tig0032509:21814-21833 None:intergenic 30.0%
TCAAAGTTATCATGTATGCT+TGG - tig0032509:21888-21907 Msa1449320:intron 30.0%
ATGTATATGTGATGCTGAAT+CGG - tig0032509:21958-21977 Msa1449320:CDS 30.0%
!! AATAGTGATTAGTCTTGATG+AGG - tig0032509:22014-22033 Msa1449320:CDS 30.0%
CAATGAATGATATGAAACCA+AGG + tig0032509:22056-22075 None:intergenic 30.0%
TATCATTCATTGTGTTTGGT+AGG - tig0032509:22064-22083 Msa1449320:intron 30.0%
ATCATTCATTGTGTTTGGTA+GGG - tig0032509:22065-22084 Msa1449320:intron 30.0%
CAATGCAAAACTGAAATGTA+TGG + tig0032509:22453-22472 None:intergenic 30.0%
!! TTGGTTTTTGAATACTGACT+TGG - tig0032509:22553-22572 Msa1449320:CDS 30.0%
!!! ACTTTTCTAGTCTTGTAGAT+TGG + tig0032509:22988-23007 None:intergenic 30.0%
!! GTCCCTATGATTTGTTTAAA+TGG - tig0032509:23021-23040 Msa1449320:intron 30.0%
! TTTTTCCTTATTGCAGCATA+TGG - tig0032509:23081-23100 Msa1449320:CDS 30.0%
!!! TAAGTGGTTTTATCCAAGAT+AGG + tig0032509:23299-23318 None:intergenic 30.0%
ATTCTTATAAACTGCAGTAG+AGG - tig0032509:23462-23481 Msa1449320:intron 30.0%
!! TGTTAGTGGTTAGTTTACTA+GGG + tig0032509:23846-23865 None:intergenic 30.0%
!! ATGTTAGTGGTTAGTTTACT+AGG + tig0032509:23847-23866 None:intergenic 30.0%
! GCTCATCAGTTTTACAAAAT+AGG + tig0032509:24064-24083 None:intergenic 30.0%
! TGAGCATTTTCATCAAGAAA+TGG + tig0032509:24150-24169 None:intergenic 30.0%
! CTTTTGCATTAACAATGCTT+GGG + tig0032509:24188-24207 None:intergenic 30.0%
GGTGAAAAATGTTATTACTC+AGG + tig0032509:24212-24231 None:intergenic 30.0%
! AAATGAGGAAATTTTGCTTC+TGG - tig0032509:24508-24527 Msa1449320:intron 30.0%
AGTCAAGAAAGAACATGTAA+AGG - tig0032509:24757-24776 Msa1449320:five_prime_UTR 30.0%
GTTGTAGTTTATTGAGCAAT+TGG - tig0032509:24779-24798 Msa1449320:five_prime_UTR 30.0%
!! TCAGATTAGCATCGATTTAA+TGG - tig0032509:24828-24847 Msa1449320:five_prime_UTR 30.0%
TAATGGTAGAATGTAGTATG+AGG - tig0032509:24845-24864 Msa1449320:five_prime_UTR 30.0%
!! GATGAGTTGATGTAACGTTT+AGG + tig0032509:20586-20605 None:intergenic 35.0%
!! TGATGATGTGTAGAGGATTT+TGG + tig0032509:20671-20690 None:intergenic 35.0%
!!! ACTTTTTGGTTGCTTGATCA+TGG + tig0032509:20696-20715 None:intergenic 35.0%
GTAGTAGTGATTGAGTGATT+CGG + tig0032509:20784-20803 None:intergenic 35.0%
! GATGAACGAACTTTTCGTAA+CGG + tig0032509:20825-20844 None:intergenic 35.0%
ATTCAAGTATGGAACCCAAA+TGG - tig0032509:20885-20904 Msa1449320:three_prime_UTR 35.0%
! CGACTCTGTATTTTCCATTT+GGG + tig0032509:20902-20921 None:intergenic 35.0%
! ACGACTCTGTATTTTCCATT+TGG + tig0032509:20903-20922 None:intergenic 35.0%
! TTGATTGGTGATAAGTGTGA+TGG - tig0032509:21147-21166 Msa1449320:three_prime_UTR 35.0%
! GATAAGTGTGATGGAGTTAT+TGG - tig0032509:21156-21175 Msa1449320:three_prime_UTR 35.0%
TTGTGAATCAAGAATAGAGG+GGG - tig0032509:21475-21494 Msa1449320:intron 35.0%
AGGCAAAGCTTTCAGTAATA+TGG - tig0032509:21701-21720 Msa1449320:intron 35.0%
GTCAATGCTGCAAACAAATA+TGG - tig0032509:21747-21766 Msa1449320:intron 35.0%
!! AACAAATATGGTGTTGCTGT+TGG - tig0032509:21759-21778 Msa1449320:intron 35.0%
GAATGAAAGAGAAAGCTTAC+AGG + tig0032509:21792-21811 None:intergenic 35.0%
TTATCATGTATGCTTGGATG+AGG - tig0032509:21894-21913 Msa1449320:intron 35.0%
TATCATGTATGCTTGGATGA+GGG - tig0032509:21895-21914 Msa1449320:intron 35.0%
TGCTGAATCGGTTGTAATTA+TGG - tig0032509:21970-21989 Msa1449320:CDS 35.0%
TGTTTATCTGGCAGATTTGT+TGG - tig0032509:22345-22364 Msa1449320:CDS 35.0%
! ATTTGTTGGAAACTTGCTCA+AGG - tig0032509:22359-22378 Msa1449320:CDS 35.0%
! TTTGTTGGAAACTTGCTCAA+GGG - tig0032509:22360-22379 Msa1449320:CDS 35.0%
TTGCATAAGCTGATCCAATA+CGG + tig0032509:22413-22432 None:intergenic 35.0%
ATCAGCTTATGCAAGAATGA+TGG - tig0032509:22419-22438 Msa1449320:intron 35.0%
CAATCAAGTGAACCTGAAAT+GGG + tig0032509:22489-22508 None:intergenic 35.0%
TCAATCAAGTGAACCTGAAA+TGG + tig0032509:22490-22509 None:intergenic 35.0%
ATCCTACTTGAAAGTTCTCT+AGG - tig0032509:22597-22616 Msa1449320:intron 35.0%
CTCTAGGTCACATAATATCT+AGG - tig0032509:22613-22632 Msa1449320:intron 35.0%
TTCAAATTTGGCCAAGTTAC+TGG - tig0032509:22807-22826 Msa1449320:intron 35.0%
! TGATTCTTTTCTGCTGTATC+AGG - tig0032509:22922-22941 Msa1449320:intron 35.0%
AGACTAGAAAAGTTTGTCAC+AGG - tig0032509:22995-23014 Msa1449320:intron 35.0%
AGCATATGGTGCTTTCTTAA+AGG - tig0032509:23095-23114 Msa1449320:CDS 35.0%
AAACACCAGTAACTTGGAAA+AGG - tig0032509:23127-23146 Msa1449320:CDS 35.0%
AACACCAGTAACTTGGAAAA+GGG - tig0032509:23128-23147 Msa1449320:CDS 35.0%
TTCTTACTATATCTGCCTCT+TGG + tig0032509:23176-23195 None:intergenic 35.0%
!! GATTAGTCTTCATCCTATCT+TGG - tig0032509:23283-23302 Msa1449320:intron 35.0%
AACTCTAACCTTCTTCATCT+TGG + tig0032509:23348-23367 None:intergenic 35.0%
ATGAAGAAGGTTAGAGTTCA+AGG - tig0032509:23350-23369 Msa1449320:CDS 35.0%
TGAAGAAGGTTAGAGTTCAA+GGG - tig0032509:23351-23370 Msa1449320:CDS 35.0%
AAATTACTTATGGCATCACG+TGG - tig0032509:23392-23411 Msa1449320:CDS 35.0%
AGTGCAACTTCATCAATAAC+AGG + tig0032509:23489-23508 None:intergenic 35.0%
TATTGATGAAGTTGCACTTG+TGG - tig0032509:23491-23510 Msa1449320:intron 35.0%
CAATTACCTCAAACACATCA+AGG + tig0032509:23551-23570 None:intergenic 35.0%
! AATTGAACCTTGTCTGCTTT+TGG - tig0032509:23566-23585 Msa1449320:intron 35.0%
TTGTTATCCAAAAGCAGACA+AGG + tig0032509:23576-23595 None:intergenic 35.0%
AATCACATGGTGTCTTGAAA+AGG + tig0032509:23620-23639 None:intergenic 35.0%
ATGAGCCTCCTTATAATACA+GGG - tig0032509:24078-24097 Msa1449320:intron 35.0%
TGATCTTGCCCTGTATTATA+AGG + tig0032509:24089-24108 None:intergenic 35.0%
TATAATACAGGGCAAGATCA+AGG - tig0032509:24089-24108 Msa1449320:intron 35.0%
ATAATACAGGGCAAGATCAA+GGG - tig0032509:24090-24109 Msa1449320:intron 35.0%
TATTGGCATCAAACCATACT+GGG + tig0032509:24119-24138 None:intergenic 35.0%
AGTATGGTTTGATGCCAATA+GGG - tig0032509:24119-24138 Msa1449320:intron 35.0%
! GCTTTTGCATTAACAATGCT+TGG + tig0032509:24189-24208 None:intergenic 35.0%
! ACATTTTTCACCCTTTCACT+TGG - tig0032509:24220-24239 Msa1449320:intron 35.0%
! CATTTTTCACCCTTTCACTT+GGG - tig0032509:24221-24240 Msa1449320:intron 35.0%
AATATTTGGCCCAAGTGAAA+GGG + tig0032509:24233-24252 None:intergenic 35.0%
!! ATACACTACAGCTTTGAAAC+TGG + tig0032509:24323-24342 None:intergenic 35.0%
CTTGCATTCTTCTGATCTAA+TGG + tig0032509:24557-24576 None:intergenic 35.0%
TGTATCCATCCTCACTTATA+AGG - tig0032509:24875-24894 Msa1449320:five_prime_UTR 35.0%
GTATCCATCCTCACTTATAA+GGG - tig0032509:24876-24895 Msa1449320:five_prime_UTR 35.0%
!! ATGAGGTGCTGAGATAGATA+GGG + tig0032509:20616-20635 None:intergenic 40.0%
! CATGGAATGATGATGTGTAG+AGG + tig0032509:20678-20697 None:intergenic 40.0%
ATTGAATCAGTGAGTCAAGG+TGG + tig0032509:20849-20868 None:intergenic 40.0%
!! ACCTTGACTCACTGATTCAA+TGG - tig0032509:20848-20867 Msa1449320:three_prime_UTR 40.0%
GTTAGCACAAAATCAATGCC+TGG - tig0032509:20921-20940 Msa1449320:three_prime_UTR 40.0%
! CTAAAGTGTTTATCGAGGAG+AGG - tig0032509:21524-21543 Msa1449320:CDS 40.0%
GCTTTCAGTAATATGGCTGT+TGG - tig0032509:21708-21727 Msa1449320:intron 40.0%
GACTTGTACTGCTAAACCTT+CGG - tig0032509:21927-21946 Msa1449320:intron 40.0%
ACTTGTACTGCTAAACCTTC+GGG - tig0032509:21928-21947 Msa1449320:intron 40.0%
ATATACATGCATGTACCCGA+AGG + tig0032509:21946-21965 None:intergenic 40.0%
ATGAGGGCAGGATTATATGA+TGG - tig0032509:22170-22189 Msa1449320:CDS 40.0%
TGTGCTATACACTCTTCTGA+AGG - tig0032509:22301-22320 Msa1449320:intron 40.0%
!! GGACAAACAGTTGGTGTTAT+CGG - tig0032509:22381-22400 Msa1449320:CDS 40.0%
ATGTCTATCCATCCCATTTC+AGG - tig0032509:22474-22493 Msa1449320:intron 40.0%
! GACCTAGAGAACTTTCAAGT+AGG + tig0032509:22602-22621 None:intergenic 40.0%
!! TTTCTGCTGTATCAGGTTGA+AGG - tig0032509:22929-22948 Msa1449320:intron 40.0%
!! TTCTGCTGTATCAGGTTGAA+GGG - tig0032509:22930-22949 Msa1449320:intron 40.0%
GGTAGAGATCGAAGTATATC+AGG + tig0032509:22967-22986 None:intergenic 40.0%
AAGCACCATATGCTGCAATA+AGG + tig0032509:23089-23108 None:intergenic 40.0%
GGTGCTTTCTTAAAGGCAAA+TGG - tig0032509:23102-23121 Msa1449320:CDS 40.0%
ATGGTGAAACACCAGTAACT+TGG - tig0032509:23121-23140 Msa1449320:CDS 40.0%
CAGCTACAAAGTTTAACTCG+AGG + tig0032509:23206-23225 None:intergenic 40.0%
GAAAATCCAATGTTTCGCGT+AGG - tig0032509:23525-23544 Msa1449320:intron 40.0%
!! GTCTGCTTTTGGATAACAAC+AGG - tig0032509:23577-23596 Msa1449320:intron 40.0%
AGCAATGTGTGGTACTACAA+CGG + tig0032509:23697-23716 None:intergenic 40.0%
! GTTAGTTTACTAGGGAGAAG+GGG + tig0032509:23838-23857 None:intergenic 40.0%
!! GGTTAGTTTACTAGGGAGAA+GGG + tig0032509:23839-23858 None:intergenic 40.0%
!! TGGTTAGTTTACTAGGGAGA+AGG + tig0032509:23840-23859 None:intergenic 40.0%
GGTGGATATGCAAATGTTAG+TGG + tig0032509:23860-23879 None:intergenic 40.0%
TTTCATGCATGTGTTTGCAG+TGG - tig0032509:23931-23950 Msa1449320:intron 40.0%
ATCCAAGATGGAGAGACATA+GGG + tig0032509:24005-24024 None:intergenic 40.0%
AATCCAAGATGGAGAGACAT+AGG + tig0032509:24006-24025 None:intergenic 40.0%
ACGTAGGAATGAATCCAAGA+TGG + tig0032509:24017-24036 None:intergenic 40.0%
GATGAGCCTCCTTATAATAC+AGG - tig0032509:24077-24096 Msa1449320:intron 40.0%
TCTTGCCCTGTATTATAAGG+AGG + tig0032509:24086-24105 None:intergenic 40.0%
CTATTGGCATCAAACCATAC+TGG + tig0032509:24120-24139 None:intergenic 40.0%
CAGTATGGTTTGATGCCAAT+AGG - tig0032509:24118-24137 Msa1449320:intron 40.0%
CAATATTTGGCCCAAGTGAA+AGG + tig0032509:24234-24253 None:intergenic 40.0%
AAAGCTGTAGTGTATGCGTA+CGG - tig0032509:24328-24347 Msa1449320:intron 40.0%
! TATGCACACACAAGCTTTGA+AGG + tig0032509:24377-24396 None:intergenic 40.0%
!! ACAAAGTGCAGTGTTGATGA+CGG - tig0032509:24691-24710 Msa1449320:five_prime_UTR 40.0%
TATTGAGCAATTGGGAGAGT+TGG - tig0032509:24788-24807 Msa1449320:five_prime_UTR 40.0%
ATTGAGCAATTGGGAGAGTT+GGG - tig0032509:24789-24808 Msa1449320:five_prime_UTR 40.0%
!! TGAGGTGCTGAGATAGATAG+GGG + tig0032509:20615-20634 None:intergenic 45.0%
!! CATGAGGTGCTGAGATAGAT+AGG + tig0032509:20617-20636 None:intergenic 45.0%
GTTAATGTGAGGAGGACATG+AGG + tig0032509:20633-20652 None:intergenic 45.0%
!! AGTGATTCGGTGTGAAACAG+TGG + tig0032509:20771-20790 None:intergenic 45.0%
GCCATTGAATCAGTGAGTCA+AGG + tig0032509:20852-20871 None:intergenic 45.0%
AATCAATGCCTGGAACTCGT+TGG - tig0032509:20931-20950 Msa1449320:three_prime_UTR 45.0%
AGATTGATCCAACGAGTTCC+AGG + tig0032509:20942-20961 None:intergenic 45.0%
! GTGTGATGGAGTTATTGGAC+AGG - tig0032509:21161-21180 Msa1449320:exon 45.0%
ATAAAAGCAACTCTCGGGAG+AGG - tig0032509:21592-21611 Msa1449320:intron 45.0%
TAAAAGCAACTCTCGGGAGA+GGG - tig0032509:21593-21612 Msa1449320:intron 45.0%
! TTTTGCAGCTGACTGAAGAC+TGG - tig0032509:21643-21662 Msa1449320:intron 45.0%
TTTGCAGCTGACTGAAGACT+GGG - tig0032509:21644-21663 Msa1449320:intron 45.0%
! TTCTCTGCTTTGAGCAAAGC+AGG - tig0032509:21678-21697 Msa1449320:intron 45.0%
AGCTGCTAGAAGGATAGTTG+AGG - tig0032509:22136-22155 Msa1449320:intron 45.0%
TTGAGGCAGATGAGTTCATG+AGG - tig0032509:22153-22172 Msa1449320:intron 45.0%
TGAGGCAGATGAGTTCATGA+GGG - tig0032509:22154-22173 Msa1449320:intron 45.0%
! CTATACACTCTTCTGAAGGC+TGG - tig0032509:22305-22324 Msa1449320:intron 45.0%
TTGCTCAAGGGACAAACAGT+TGG - tig0032509:22372-22391 Msa1449320:CDS 45.0%
CAAGTGAACCTGAAATGGGA+TGG + tig0032509:22485-22504 None:intergenic 45.0%
AAGACTCGCCAAGATGAAGA+AGG - tig0032509:23337-23356 Msa1449320:CDS 45.0%
CACATGGTGTCTTGAAAAGG+TGG + tig0032509:23617-23636 None:intergenic 45.0%
GCAAGTCCAGGTTTCATGTA+GGG + tig0032509:23660-23679 None:intergenic 45.0%
TGCAAGTCCAGGTTTCATGT+AGG + tig0032509:23661-23680 None:intergenic 45.0%
TTCTTCAACTCTGCAAGTCC+AGG + tig0032509:23672-23691 None:intergenic 45.0%
TTGGAAGCAGAAGCAATGTG+TGG + tig0032509:23708-23727 None:intergenic 45.0%
ACACATTGCTTCTGCTTCCA+AGG - tig0032509:23707-23726 Msa1449320:intron 45.0%
ATCCCTATGTCTCTCCATCT+TGG - tig0032509:24000-24019 Msa1449320:intron 45.0%
ATGGTTTGATGCCAATAGGG+TGG - tig0032509:24122-24141 Msa1449320:intron 45.0%
AAGAAATGGCTCCACCCTAT+TGG + tig0032509:24136-24155 None:intergenic 45.0%
AAGCTGTAGTGTATGCGTAC+GGG - tig0032509:24329-24348 Msa1449320:intron 45.0%
!! CAAGCTTTGAAGGCTCTTGT+AGG + tig0032509:24367-24386 None:intergenic 45.0%
AGCTTGTGTGTGCATACTGA+TGG - tig0032509:24381-24400 Msa1449320:CDS 45.0%
TTGTGTGTGCATACTGATGG+TGG - tig0032509:24384-24403 Msa1449320:CDS 45.0%
TCCATCCTCACTTATAAGGG+AGG - tig0032509:24879-24898 Msa1449320:five_prime_UTR 45.0%
TCCTCCCTTATAAGTGAGGA+TGG + tig0032509:24883-24902 None:intergenic 45.0%
ATCCTCACTTATAAGGGAGG+AGG - tig0032509:24882-24901 Msa1449320:five_prime_UTR 45.0%
TCCTCACTTATAAGGGAGGA+GGG - tig0032509:24883-24902 Msa1449320:five_prime_UTR 45.0%
!! TTATATATTTAAATTACTTA+TGG - tig0032509:23382-23401 Msa1449320:CDS 5.0%
!! AGGTGCTGAGATAGATAGGG+GGG + tig0032509:20613-20632 None:intergenic 50.0%
!! GAGGTGCTGAGATAGATAGG+GGG + tig0032509:20614-20633 None:intergenic 50.0%
TTGCAGCTGACTGAAGACTG+GGG - tig0032509:21645-21664 Msa1449320:intron 50.0%
! TCTGCTTTGAGCAAAGCAGG+AGG - tig0032509:21681-21700 Msa1449320:intron 50.0%
GGGAGTTCTCACAGAGACTA+CGG - tig0032509:22085-22104 Msa1449320:intron 50.0%
!! GCTTGCAGCTTCACTGACTT+TGG - tig0032509:22112-22131 Msa1449320:intron 50.0%
TGACTTTGGCAGCTGCTAGA+AGG - tig0032509:22126-22145 Msa1449320:intron 50.0%
GGGCAGGATTATATGATGGC+TGG - tig0032509:22174-22193 Msa1449320:CDS 50.0%
!! ACAGTTGGTGTTATCGGAGC+TGG - tig0032509:22387-22406 Msa1449320:CDS 50.0%
GGAAGGCTTGTCCAGTAACT+TGG + tig0032509:22821-22840 None:intergenic 50.0%
! GCTGCCCTTTTCCAAGTTAC+TGG + tig0032509:23135-23154 None:intergenic 50.0%
TTGGAAAAGGGCAGCATCCA+TGG - tig0032509:23140-23159 Msa1449320:intron 50.0%
CTTGTTGACGAGGTGGTAAG+TGG + tig0032509:23315-23334 None:intergenic 50.0%
CACTTACCACCTCGTCAACA+AGG - tig0032509:23313-23332 Msa1449320:CDS 50.0%
GTCTTTCCTTGTTGACGAGG+TGG + tig0032509:23322-23341 None:intergenic 50.0%
CGAGTCTTTCCTTGTTGACG+AGG + tig0032509:23325-23344 None:intergenic 50.0%
TCAAGGCCTACGCGAAACAT+TGG + tig0032509:23534-23553 None:intergenic 50.0%
CGTAGGCCTTGATGTGTTTG+AGG - tig0032509:23542-23561 Msa1449320:intron 50.0%
GATGAGCCCTACATGAAACC+TGG - tig0032509:23651-23670 Msa1449320:intron 50.0%
! TGTTTGCAGTGGACTCGTGA+GGG - tig0032509:23942-23961 Msa1449320:intron 50.0%
!! GCTAGCAGCTCTAAATGTGC+TGG - tig0032509:23974-23993 Msa1449320:intron 50.0%
AGATCAAGGGCTACCCAGTA+TGG - tig0032509:24103-24122 Msa1449320:intron 50.0%
CCTCACTTATAAGGGAGGAG+GGG - tig0032509:24884-24903 Msa1449320:five_prime_UTR 50.0%
GCAGATGAGTTCATGAGGGC+AGG - tig0032509:22158-22177 Msa1449320:CDS 55.0%
GTTATCGGAGCTGGCCGTAT+TGG - tig0032509:22396-22415 Msa1449320:CDS 55.0%
CTCTTGGAGAACCTCGTCCA+TGG + tig0032509:23160-23179 None:intergenic 55.0%
CATGGACGAGGTTCTCCAAG+AGG - tig0032509:23158-23177 Msa1449320:intron 55.0%
! GTCTTTTCATGTCCCCGCAG+TGG - tig0032509:23753-23772 Msa1449320:CDS 55.0%
TTCATGTCCCCGCAGTGGTA+TGG - tig0032509:23758-23777 Msa1449320:CDS 55.0%
TCATGTCCCCGCAGTGGTAT+GGG - tig0032509:23759-23778 Msa1449320:CDS 55.0%
AGTCCCAACCCATACCACTG+CGG + tig0032509:23770-23789 None:intergenic 55.0%
! GTGTTTGCAGTGGACTCGTG+AGG - tig0032509:23941-23960 Msa1449320:intron 55.0%
ACAATGCTTGGGCATGCAGC+TGG + tig0032509:24177-24196 None:intergenic 55.0%
!! GCATACTGATGGTGGCAGTG+TGG - tig0032509:24392-24411 Msa1449320:CDS 55.0%
CCCCTCCTCCCTTATAAGTG+AGG + tig0032509:24887-24906 None:intergenic 55.0%
AAGGGCAGCATCCATGGACG+AGG - tig0032509:23146-23165 Msa1449320:intron 60.0%
TCCCCGCAGTGGTATGGGTT+GGG - tig0032509:23764-23783 Msa1449320:CDS 60.0%
TCCCAACCCATACCACTGCG+GGG + tig0032509:23768-23787 None:intergenic 60.0%
GTCCCAACCCATACCACTGC+GGG + tig0032509:23769-23788 None:intergenic 60.0%
! GCAGTGGACTCGTGAGGGAA+TGG - tig0032509:23947-23966 Msa1449320:intron 60.0%
ATGCTTGGGCATGCAGCTGG+AGG + tig0032509:24174-24193 None:intergenic 60.0%
GTCCCCGCAGTGGTATGGGT+TGG - tig0032509:23763-23782 Msa1449320:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0032509 gene 20583 24933 20583 ID=Msa1449320;Name=Msa1449320
tig0032509 mRNA 20583 24933 20583 ID=Msa1449320-mRNA-1;Parent=Msa1449320;Name=Msa1449320-mRNA-1;_AED=0.07;_eAED=0.07;_QI=284|1|1|1|1|1|13|596|386
tig0032509 exon 20583 21201 20583 ID=Msa1449320-mRNA-1:exon:16892;Parent=Msa1449320-mRNA-1
tig0032509 exon 21303 21417 21303 ID=Msa1449320-mRNA-1:exon:16891;Parent=Msa1449320-mRNA-1
tig0032509 exon 21521 21565 21521 ID=Msa1449320-mRNA-1:exon:16890;Parent=Msa1449320-mRNA-1
tig0032509 exon 21788 21865 21788 ID=Msa1449320-mRNA-1:exon:16889;Parent=Msa1449320-mRNA-1
tig0032509 exon 21953 22060 21953 ID=Msa1449320-mRNA-1:exon:16888;Parent=Msa1449320-mRNA-1
tig0032509 exon 22158 22232 22158 ID=Msa1449320-mRNA-1:exon:16887;Parent=Msa1449320-mRNA-1
tig0032509 exon 22328 22419 22328 ID=Msa1449320-mRNA-1:exon:16886;Parent=Msa1449320-mRNA-1
tig0032509 exon 22500 22572 22500 ID=Msa1449320-mRNA-1:exon:16885;Parent=Msa1449320-mRNA-1
tig0032509 exon 23076 23157 23076 ID=Msa1449320-mRNA-1:exon:16884;Parent=Msa1449320-mRNA-1
tig0032509 exon 23309 23430 23309 ID=Msa1449320-mRNA-1:exon:16883;Parent=Msa1449320-mRNA-1
tig0032509 exon 23725 23865 23725 ID=Msa1449320-mRNA-1:exon:16882;Parent=Msa1449320-mRNA-1
tig0032509 exon 24334 24417 24334 ID=Msa1449320-mRNA-1:exon:16881;Parent=Msa1449320-mRNA-1
tig0032509 exon 24527 24933 24527 ID=Msa1449320-mRNA-1:exon:16880;Parent=Msa1449320-mRNA-1
tig0032509 five_prime_UTR 24650 24933 24650 ID=Msa1449320-mRNA-1:five_prime_utr;Parent=Msa1449320-mRNA-1
tig0032509 CDS 24527 24649 24527 ID=Msa1449320-mRNA-1:cds;Parent=Msa1449320-mRNA-1
tig0032509 CDS 24334 24417 24334 ID=Msa1449320-mRNA-1:cds;Parent=Msa1449320-mRNA-1
tig0032509 CDS 23725 23865 23725 ID=Msa1449320-mRNA-1:cds;Parent=Msa1449320-mRNA-1
tig0032509 CDS 23309 23430 23309 ID=Msa1449320-mRNA-1:cds;Parent=Msa1449320-mRNA-1
tig0032509 CDS 23076 23157 23076 ID=Msa1449320-mRNA-1:cds;Parent=Msa1449320-mRNA-1
tig0032509 CDS 22500 22572 22500 ID=Msa1449320-mRNA-1:cds;Parent=Msa1449320-mRNA-1
tig0032509 CDS 22328 22419 22328 ID=Msa1449320-mRNA-1:cds;Parent=Msa1449320-mRNA-1
tig0032509 CDS 22158 22232 22158 ID=Msa1449320-mRNA-1:cds;Parent=Msa1449320-mRNA-1
tig0032509 CDS 21953 22060 21953 ID=Msa1449320-mRNA-1:cds;Parent=Msa1449320-mRNA-1
tig0032509 CDS 21788 21865 21788 ID=Msa1449320-mRNA-1:cds;Parent=Msa1449320-mRNA-1
tig0032509 CDS 21521 21565 21521 ID=Msa1449320-mRNA-1:cds;Parent=Msa1449320-mRNA-1
tig0032509 CDS 21303 21417 21303 ID=Msa1449320-mRNA-1:cds;Parent=Msa1449320-mRNA-1
tig0032509 CDS 21179 21201 21179 ID=Msa1449320-mRNA-1:cds;Parent=Msa1449320-mRNA-1
tig0032509 three_prime_UTR 20583 21178 20583 ID=Msa1449320-mRNA-1:three_prime_utr;Parent=Msa1449320-mRNA-1
Gene Sequence

>Msa1449320

ATGGCTAAACCAGTTTCAATTCAAGTATGGAACCCAAATGGAAAATACAGAGTCGTTAGCACAAAATCAATGCCTGGAACTCGTTGGATCAATCTTCTCATTCAACAAGATTGTCGTCTTGAAATATGTACGGAGAAGAAAACAATTCTGTCAGTTGAAGATATCATTGCTTTGATTGGTGATAAGTGTGATGGAGTTATTGGACAGCTGACTGAAGACTGGGGAGAAGAGTTGTTCTCTGCTTTGAGCAAAGCAGGAGGCAAAGCTTTCAGTAATATGGCTGTTGGTTATAATAATGTTGATGTCAATGCTGCAAACAAATATGGTGTTGCTGTTGGAAATACTCCTGGAGTTCTCACAGAGACTACGGCAGAGCTTGCAGCTTCACTGACTTTGGCAGCTGCTAGAAGGATAGTTGAGGCAGATGAGTTCATGAGGGCAGGATTATATGATGGCTGGCTACCTCATCTATTTGTTGGAAACTTGCTCAAGGGACAAACAGTTGGTGTTATCGGAGCTGGCCGTATTGGATCAGCTTATGCAAGAATGATGGTTGAAGGGTTCAAGATGAACCTGATATACTTCGATCTCTACCAATCTACAAGACTAGAAAAGTTTGTCACAGCATATGGTGCTTTCTTAAAGGCAAATGGTGAAACACCAGTAACTTGGAAAAGGGCAGCATCCATGGACGAGGTTCTCCAAGAGGCAGATATAATTAGTCTTCATCCTATCTTGGATAAAACCACTTACCACCTCGTCAACAAGGAAAGACTCGCCAAGATGAAGAAGGAAGCAATTCTTATAAACTGCAGTAGAGGACCTGTTATTGATGAAGTTGCACTTGTGGAGCATTTAAAAGAAAATCCAATGTTTCGCGTAGGCCTTGATGTGTTTGAGGATGAGCCCTACATGAAACCTGGACTTGCAGAGTTGAAGAATGCCGTTGTAGTACCACACATTGCTTCTGCTTCCAAGTGGACTCGTGAGGGAATGGCAACGCTAGCAGCTCTAAATGTGCTGGGCAAGATCAAGGGCTACCCAGTATGGTTTGATGCCAATAGGGTGGAGCCATTTCTTGATGAAAATGCTCAACCTCCAGCTGCATGCCCAAGCATTGTTAATGCAAAAGCCCTGAGTTTACCAGTTTCAAAGCTGTAG

Protein sequence

>Msa1449320

MAKPVSIQVWNPNGKYRVVSTKSMPGTRWINLLIQQDCRLEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGEELFSALSKAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAASLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGAFLKANGETPVTWKRAASMDEVLQEADIISLHPILDKTTYHLVNKERLAKMKKEAILINCSRGPVIDEVALVEHLKENPMFRVGLDVFEDEPYMKPGLAELKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWFDANRVEPFLDENAQPPAACPSIVNAKALSLPVSKL*