AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0475080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0475080 MtrunA17_Chr3g0132151 98.148 216 3 1 1 215 1 216 4.34e-157 433
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0475080 AT4G24930.1 63.131 198 66 3 21 215 32 225 8.45e-86 253

Find 68 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAGACATACTTGAGTTTC+TGG 0.160164 3_3:+78153328 Msa0475080:CDS
TTGCAACTTGGATTAGAAAA+TGG 0.163370 3_3:+78151984 Msa0475080:CDS
TTTATGTTGCTTTAATTCTT+TGG 0.192365 3_3:+78153525 Msa0475080:three_prime_UTR
TTCAGTGGATAATGCTATTC+AGG 0.221800 3_3:+78152205 Msa0475080:CDS
CTACTCCATGGAATCAAAAC+TGG 0.299136 3_3:-78153489 None:intergenic
CCTTATTATATACAATTTCA+TGG 0.309257 3_3:+78153585 Msa0475080:three_prime_UTR
TTGTTTGATAGCAGTTTCTA+AGG 0.314027 3_3:+78153667 Msa0475080:three_prime_UTR
CCATGAAATTGTATATAATA+AGG 0.323387 3_3:-78153585 None:intergenic
TACCCTTTCACTACTGCATT+TGG 0.323541 3_3:+78153404 Msa0475080:CDS
CAAGCAAATTAATGACCAAT+TGG 0.356028 3_3:+78153454 Msa0475080:CDS
AAGGAAGAATGTAATAATAA+AGG 0.360871 3_3:-78153566 None:intergenic
TGGTTTATCAGAATTGAGTT+TGG 0.373018 3_3:-78151823 None:intergenic
TGGATTTGTTGATATGCAAC+CGG 0.395325 3_3:-78152141 None:intergenic
AAGAGATTAGGTAGGAACTT+TGG 0.399530 3_3:-78151843 None:intergenic
GGTTTATCAGAATTGAGTTT+GGG 0.404393 3_3:-78151822 None:intergenic
ATGCAACCGGGATTTATTGA+TGG 0.409010 3_3:-78152128 None:intergenic
TGCAACTTGGATTAGAAAAT+GGG 0.415814 3_3:+78151985 Msa0475080:CDS
TGTGGTTGCCTTTAGGTGTA+TGG 0.418783 3_3:+78153361 Msa0475080:CDS
AAATCAAAAGATGATGACTT+TGG 0.419319 3_3:-78152161 None:intergenic
GGAGTGGTACTAAGAGAGGT+TGG 0.433778 3_3:-78151942 None:intergenic
TGGGAGCATACCAGCCCAAT+TGG 0.448538 3_3:-78153469 None:intergenic
AAGGTGATGTGGTTGCCTTT+AGG 0.454205 3_3:+78153354 Msa0475080:CDS
TGTGAGTTTGAGGAAGAGGA+TGG 0.454807 3_3:-78151788 None:intergenic
AAGATAATCATCGCACGGTT+AGG 0.472571 3_3:-78153724 None:intergenic
TATCTGCAAGCTGAAGTTGA+TGG 0.477075 3_3:+78153296 Msa0475080:CDS
GGGATTGCATGAGAAGGTAG+TGG 0.481680 3_3:-78151897 None:intergenic
ATGGCTAGAGAGAAGAGATT+AGG 0.488838 3_3:-78151855 None:intergenic
TTAGTGTGAGTTTGAGGAAG+AGG 0.497936 3_3:-78151792 None:intergenic
TACTGCATTTGGAGATTCAA+AGG 0.499524 3_3:+78153415 Msa0475080:CDS
AAGCAAATTAATGACCAATT+GGG 0.501077 3_3:+78153455 Msa0475080:CDS
GTGGTACTAAGAGAGGTTGG+AGG 0.502521 3_3:-78151939 None:intergenic
ATCAGAATTGAGTTTGGGAA+TGG 0.505610 3_3:-78151817 None:intergenic
TGCAACCGGGATTTATTGAT+GGG 0.506490 3_3:-78152127 None:intergenic
AAAAGGAGTGGTACTAAGAG+AGG 0.514586 3_3:-78151946 None:intergenic
TGGTACTAAGAGAGGTTGGA+GGG 0.515063 3_3:-78151938 None:intergenic
CTCCAAATGCAGTAGTGAAA+GGG 0.516194 3_3:-78153406 None:intergenic
CCATCTGGGGTATCTTCCAC+AGG 0.517926 3_3:-78152360 None:intergenic
AACAGAACAACCGTCACCTA+TGG 0.522581 3_3:+78151678 Msa0475080:five_prime_UTR
ATACTTGAGTTTCTGGTGAA+AGG 0.527900 3_3:+78153335 Msa0475080:CDS
TCTCCAAATGCAGTAGTGAA+AGG 0.529463 3_3:-78153407 None:intergenic
GTACTAAGAGAGGTTGGAGG+GGG 0.530029 3_3:-78151936 None:intergenic
AAATGTTGATCCTTTCTGAA+AGG 0.544192 3_3:-78151654 None:intergenic
GGGGTTGAGAATTGAGGGAA+GGG 0.549442 3_3:-78151917 None:intergenic
GGATTTGTTGATATGCAACC+GGG 0.556553 3_3:-78152140 None:intergenic
ACTGCATTTGGAGATTCAAA+GGG 0.560035 3_3:+78153416 Msa0475080:CDS
GGTACTAAGAGAGGTTGGAG+GGG 0.564720 3_3:-78151937 None:intergenic
AAATTAATGACCAATTGGGC+TGG 0.567072 3_3:+78153459 Msa0475080:CDS
TAGAAACATTAACTACTCCA+TGG 0.568520 3_3:-78153501 None:intergenic
CTGTGTTAGAATTACCATCT+GGG 0.569604 3_3:-78152374 None:intergenic
ACAATAACAGCCTTTCAGAA+AGG 0.572124 3_3:+78151644 Msa0475080:five_prime_UTR
CCGGGATTTATTGATGGGCA+AGG 0.577544 3_3:-78152122 None:intergenic
AGGGAAGGGATTGCATGAGA+AGG 0.578003 3_3:-78151903 None:intergenic
ACATGATGCAGTGAGTGGAT+AGG 0.579106 3_3:+78151726 Msa0475080:five_prime_UTR
GACGGTTCCTGAAAATTCAG+TGG 0.584622 3_3:+78152190 Msa0475080:CDS
TGGAGATTCAAAGGGTCAAG+AGG 0.585389 3_3:+78153424 Msa0475080:CDS
AAATGTGAAGTTTCAGCCTG+TGG 0.591368 3_3:+78152344 Msa0475080:CDS
ATGGTGTTAGTGTGAGTTTG+AGG 0.592040 3_3:-78151798 None:intergenic
CCTTGCCCATCAATAAATCC+CGG 0.598400 3_3:+78152122 Msa0475080:CDS
TACTCCATGGAATCAAAACT+GGG 0.599267 3_3:-78153488 None:intergenic
GTTTCTGGTGAAAGGTGATG+TGG 0.600928 3_3:+78153343 Msa0475080:CDS
AACAAACATGATGCAGTGAG+TGG 0.610968 3_3:+78151721 Msa0475080:five_prime_UTR
AGATGTTAATGTTACAGCAA+TGG 0.619227 3_3:-78151874 None:intergenic
CTAGAGAGAAGAGATTAGGT+AGG 0.619819 3_3:-78151851 None:intergenic
GCTTAGCCGCAAAACAACAA+AGG 0.641330 3_3:-78153608 None:intergenic
TGTGTTAGAATTACCATCTG+GGG 0.653509 3_3:-78152373 None:intergenic
CCTGTGGAAGATACCCCAGA+TGG 0.675119 3_3:+78152360 Msa0475080:CDS
GGACTAAGATAATCATCGCA+CGG 0.686661 3_3:-78153729 None:intergenic
CGGTTAGGCTAAGTGAAATG+CGG 0.699974 3_3:-78153709 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAATTTTTATACGTTTT+AGG + chr3_3:78152865-78152884 Msa0475080:intron 10.0%
!!! TATAATTTTTATACGTTTTA+GGG + chr3_3:78152866-78152885 Msa0475080:intron 10.0%
!!! TTATAATTTTTATACGTTTT+AGG + chr3_3:78152865-78152884 Msa0475080:intron 10.0%
!!! TATAATTTTTATACGTTTTA+GGG + chr3_3:78152866-78152885 Msa0475080:intron 10.0%
!!! TATATTTTTCTTTTGTTATG+TGG + chr3_3:78151618-78151637 Msa0475080:five_prime_UTR 15.0%
!!! TGACGAATTTTATATATTTT+AGG + chr3_3:78152578-78152597 Msa0475080:intron 15.0%
!!! GACGAATTTTATATATTTTA+GGG + chr3_3:78152579-78152598 Msa0475080:intron 15.0%
!!! GATTATAAATGATTTTATCT+AGG + chr3_3:78152991-78153010 Msa0475080:intron 15.0%
!!! TATATTTTTCTTTTGTTATG+TGG + chr3_3:78151618-78151637 Msa0475080:five_prime_UTR 15.0%
!!! TGACGAATTTTATATATTTT+AGG + chr3_3:78152578-78152597 Msa0475080:intron 15.0%
!!! GACGAATTTTATATATTTTA+GGG + chr3_3:78152579-78152598 Msa0475080:intron 15.0%
!!! GATTATAAATGATTTTATCT+AGG + chr3_3:78152991-78153010 Msa0475080:intron 15.0%
!!! TATCAAACTCATGATTTTTA+TGG - chr3_3:78151757-78151776 None:intergenic 20.0%
!!! TTTAGTTGATAATAAAACCA+TGG - chr3_3:78152058-78152077 None:intergenic 20.0%
!!! TTCTATTTTTCATTGCTAAT+TGG - chr3_3:78152455-78152474 None:intergenic 20.0%
!!! CTTCAAATCTAAATTTTGTA+GGG - chr3_3:78152716-78152735 None:intergenic 20.0%
!!! TACTTTAAGAACTAAATTGA+TGG + chr3_3:78152912-78152931 Msa0475080:intron 20.0%
!! TTATGCTAAAATGAATATAC+AGG + chr3_3:78153269-78153288 Msa0475080:intron 20.0%
!!! TTTATGTTGCTTTAATTCTT+TGG + chr3_3:78153525-78153544 Msa0475080:three_prime_UTR 20.0%
!! AAGGAAGAATGTAATAATAA+AGG - chr3_3:78153569-78153588 None:intergenic 20.0%
!! CCATGAAATTGTATATAATA+AGG - chr3_3:78153588-78153607 None:intergenic 20.0%
!! CCTTATTATATACAATTTCA+TGG + chr3_3:78153585-78153604 Msa0475080:three_prime_UTR 20.0%
!!! TATCAAACTCATGATTTTTA+TGG - chr3_3:78151757-78151776 None:intergenic 20.0%
!!! TTTAGTTGATAATAAAACCA+TGG - chr3_3:78152058-78152077 None:intergenic 20.0%
!!! TTCTATTTTTCATTGCTAAT+TGG - chr3_3:78152455-78152474 None:intergenic 20.0%
!!! CTTCAAATCTAAATTTTGTA+GGG - chr3_3:78152716-78152735 None:intergenic 20.0%
!!! TACTTTAAGAACTAAATTGA+TGG + chr3_3:78152912-78152931 Msa0475080:intron 20.0%
!! TTATGCTAAAATGAATATAC+AGG + chr3_3:78153269-78153288 Msa0475080:intron 20.0%
!!! TTTATGTTGCTTTAATTCTT+TGG + chr3_3:78153525-78153544 Msa0475080:three_prime_UTR 20.0%
!! AAGGAAGAATGTAATAATAA+AGG - chr3_3:78153569-78153588 None:intergenic 20.0%
!! CCATGAAATTGTATATAATA+AGG - chr3_3:78153588-78153607 None:intergenic 20.0%
!! CCTTATTATATACAATTTCA+TGG + chr3_3:78153585-78153604 Msa0475080:three_prime_UTR 20.0%
!!! ATTTTTCTTTTGTTATGTGG+TGG + chr3_3:78151621-78151640 Msa0475080:five_prime_UTR 25.0%
!!! AAGTTTTTTGACTGAGAAAA+AGG - chr3_3:78151966-78151985 None:intergenic 25.0%
! ATGCTTCATATTTAATACCA+TGG + chr3_3:78152038-78152057 Msa0475080:intron 25.0%
! AAATCAAAAGATGATGACTT+TGG - chr3_3:78152164-78152183 None:intergenic 25.0%
!! ACATGAGATAATAAAAGTAC+AGG - chr3_3:78152264-78152283 None:intergenic 25.0%
!! GTTTTTGATCAATTTACCAT+TGG + chr3_3:78152401-78152420 Msa0475080:intron 25.0%
! TAGAATAAACCATCAATTGA+GGG + chr3_3:78152542-78152561 Msa0475080:intron 25.0%
!!! TTTTAGGGACTATTGTTAAA+TGG + chr3_3:78152594-78152613 Msa0475080:intron 25.0%
!! GCTTCAAATCTAAATTTTGT+AGG - chr3_3:78152717-78152736 None:intergenic 25.0%
!! TAAATGATTTTATCTAGGTC+AGG + chr3_3:78152996-78153015 Msa0475080:intron 25.0%
!! ATTTGAGCTATTTAAAGTTG+TGG + chr3_3:78153160-78153179 Msa0475080:intron 25.0%
! AAGCAAATTAATGACCAATT+GGG + chr3_3:78153455-78153474 Msa0475080:CDS 25.0%
!!! ATTTTTCTTTTGTTATGTGG+TGG + chr3_3:78151621-78151640 Msa0475080:five_prime_UTR 25.0%
!!! AAGTTTTTTGACTGAGAAAA+AGG - chr3_3:78151966-78151985 None:intergenic 25.0%
! ATGCTTCATATTTAATACCA+TGG + chr3_3:78152038-78152057 Msa0475080:intron 25.0%
! AAATCAAAAGATGATGACTT+TGG - chr3_3:78152164-78152183 None:intergenic 25.0%
!! ACATGAGATAATAAAAGTAC+AGG - chr3_3:78152264-78152283 None:intergenic 25.0%
!! GTTTTTGATCAATTTACCAT+TGG + chr3_3:78152401-78152420 Msa0475080:intron 25.0%
! TAGAATAAACCATCAATTGA+GGG + chr3_3:78152542-78152561 Msa0475080:intron 25.0%
!!! TTTTAGGGACTATTGTTAAA+TGG + chr3_3:78152594-78152613 Msa0475080:intron 25.0%
!! GCTTCAAATCTAAATTTTGT+AGG - chr3_3:78152717-78152736 None:intergenic 25.0%
!! TAAATGATTTTATCTAGGTC+AGG + chr3_3:78152996-78153015 Msa0475080:intron 25.0%
!! ATTTGAGCTATTTAAAGTTG+TGG + chr3_3:78153160-78153179 Msa0475080:intron 25.0%
! AAGCAAATTAATGACCAATT+GGG + chr3_3:78153455-78153474 Msa0475080:CDS 25.0%
AAATGTTGATCCTTTCTGAA+AGG - chr3_3:78151657-78151676 None:intergenic 30.0%
GGTTTATCAGAATTGAGTTT+GGG - chr3_3:78151825-78151844 None:intergenic 30.0%
TGGTTTATCAGAATTGAGTT+TGG - chr3_3:78151826-78151845 None:intergenic 30.0%
AGATGTTAATGTTACAGCAA+TGG - chr3_3:78151877-78151896 None:intergenic 30.0%
! TTGCAACTTGGATTAGAAAA+TGG + chr3_3:78151984-78152003 Msa0475080:CDS 30.0%
! TGCAACTTGGATTAGAAAAT+GGG + chr3_3:78151985-78152004 Msa0475080:CDS 30.0%
AAATGGGTATGTATGCTTAA+TGG + chr3_3:78152001-78152020 Msa0475080:intron 30.0%
!!! CATCATCTTTTGATTTTCCT+TGG + chr3_3:78152168-78152187 Msa0475080:CDS 30.0%
!!! ATCTTTTGATTTTCCTTGGA+CGG + chr3_3:78152172-78152191 Msa0475080:CDS 30.0%
GTAGAATAAACCATCAATTG+AGG + chr3_3:78152541-78152560 Msa0475080:intron 30.0%
AAAAGCTAGCTCATAAAATG+AGG + chr3_3:78152622-78152641 Msa0475080:intron 30.0%
AAAGCTAGCTCATAAAATGA+GGG + chr3_3:78152623-78152642 Msa0475080:intron 30.0%
TTAGATTGTAGTGATGAACA+AGG + chr3_3:78152942-78152961 Msa0475080:intron 30.0%
CTACTGTTAGGTTATTTGAA+CGG + chr3_3:78153116-78153135 Msa0475080:intron 30.0%
! TAGTAGCTTGTAAAACCAAT+GGG - chr3_3:78153236-78153255 None:intergenic 30.0%
CAAGCAAATTAATGACCAAT+TGG + chr3_3:78153454-78153473 Msa0475080:CDS 30.0%
TAGAAACATTAACTACTCCA+TGG - chr3_3:78153504-78153523 None:intergenic 30.0%
! TTGTTTGATAGCAGTTTCTA+AGG + chr3_3:78153667-78153686 Msa0475080:three_prime_UTR 30.0%
AAATGTTGATCCTTTCTGAA+AGG - chr3_3:78151657-78151676 None:intergenic 30.0%
GGTTTATCAGAATTGAGTTT+GGG - chr3_3:78151825-78151844 None:intergenic 30.0%
TGGTTTATCAGAATTGAGTT+TGG - chr3_3:78151826-78151845 None:intergenic 30.0%
AGATGTTAATGTTACAGCAA+TGG - chr3_3:78151877-78151896 None:intergenic 30.0%
! TTGCAACTTGGATTAGAAAA+TGG + chr3_3:78151984-78152003 Msa0475080:CDS 30.0%
! TGCAACTTGGATTAGAAAAT+GGG + chr3_3:78151985-78152004 Msa0475080:CDS 30.0%
AAATGGGTATGTATGCTTAA+TGG + chr3_3:78152001-78152020 Msa0475080:intron 30.0%
!!! CATCATCTTTTGATTTTCCT+TGG + chr3_3:78152168-78152187 Msa0475080:CDS 30.0%
!!! ATCTTTTGATTTTCCTTGGA+CGG + chr3_3:78152172-78152191 Msa0475080:CDS 30.0%
GTAGAATAAACCATCAATTG+AGG + chr3_3:78152541-78152560 Msa0475080:intron 30.0%
AAAAGCTAGCTCATAAAATG+AGG + chr3_3:78152622-78152641 Msa0475080:intron 30.0%
AAAGCTAGCTCATAAAATGA+GGG + chr3_3:78152623-78152642 Msa0475080:intron 30.0%
TTAGATTGTAGTGATGAACA+AGG + chr3_3:78152942-78152961 Msa0475080:intron 30.0%
CTACTGTTAGGTTATTTGAA+CGG + chr3_3:78153116-78153135 Msa0475080:intron 30.0%
! TAGTAGCTTGTAAAACCAAT+GGG - chr3_3:78153236-78153255 None:intergenic 30.0%
CAAGCAAATTAATGACCAAT+TGG + chr3_3:78153454-78153473 Msa0475080:CDS 30.0%
TAGAAACATTAACTACTCCA+TGG - chr3_3:78153504-78153523 None:intergenic 30.0%
! TTGTTTGATAGCAGTTTCTA+AGG + chr3_3:78153667-78153686 Msa0475080:three_prime_UTR 30.0%
ACAATAACAGCCTTTCAGAA+AGG + chr3_3:78151644-78151663 Msa0475080:five_prime_UTR 35.0%
ATCAGAATTGAGTTTGGGAA+TGG - chr3_3:78151820-78151839 None:intergenic 35.0%
AAGAGATTAGGTAGGAACTT+TGG - chr3_3:78151846-78151865 None:intergenic 35.0%
!! TTTTGACTGAGAAAAAGGAG+TGG - chr3_3:78151961-78151980 None:intergenic 35.0%
CAGTCAAAAAACTTGCAACT+TGG + chr3_3:78151972-78151991 Msa0475080:CDS 35.0%
! CTGATTTTTCTGCAAGAGAA+AGG - chr3_3:78152101-78152120 None:intergenic 35.0%
!! TGGATTTGTTGATATGCAAC+CGG - chr3_3:78152144-78152163 None:intergenic 35.0%
! GCATTATCCACTGAATTTTC+AGG - chr3_3:78152200-78152219 None:intergenic 35.0%
TTCAGTGGATAATGCTATTC+AGG + chr3_3:78152205-78152224 Msa0475080:CDS 35.0%
TGTGTTAGAATTACCATCTG+GGG - chr3_3:78152376-78152395 None:intergenic 35.0%
CTGTGTTAGAATTACCATCT+GGG - chr3_3:78152377-78152396 None:intergenic 35.0%
ACTGTGTTAGAATTACCATC+TGG - chr3_3:78152378-78152397 None:intergenic 35.0%
GCAAATAACAACAACACCAA+TGG - chr3_3:78152420-78152439 None:intergenic 35.0%
! AGGCATTGTATATATGTGCT+TGG - chr3_3:78152652-78152671 None:intergenic 35.0%
! TCTAAATTTTGTAGGGCATG+TGG - chr3_3:78152709-78152728 None:intergenic 35.0%
AAAGTTAGCTCGTAAGATGA+AGG + chr3_3:78152767-78152786 Msa0475080:intron 35.0%
CTTAGGAACATTGTCAATGT+GGG + chr3_3:78152815-78152834 Msa0475080:intron 35.0%
TTAACCGTTCCTTATTGTCT+CGG - chr3_3:78153023-78153042 None:intergenic 35.0%
TACTGAACCCTACATTGAAT+CGG - chr3_3:78153207-78153226 None:intergenic 35.0%
GGTTCAGTAAATTAACCCAT+TGG + chr3_3:78153218-78153237 Msa0475080:intron 35.0%
! CTAGTAGCTTGTAAAACCAA+TGG - chr3_3:78153237-78153256 None:intergenic 35.0%
!!! CATTGGTTTTACAAGCTACT+AGG + chr3_3:78153235-78153254 Msa0475080:intron 35.0%
TAGAGACATACTTGAGTTTC+TGG + chr3_3:78153328-78153347 Msa0475080:CDS 35.0%
!! ATACTTGAGTTTCTGGTGAA+AGG + chr3_3:78153335-78153354 Msa0475080:CDS 35.0%
TACTGCATTTGGAGATTCAA+AGG + chr3_3:78153415-78153434 Msa0475080:CDS 35.0%
ACTGCATTTGGAGATTCAAA+GGG + chr3_3:78153416-78153435 Msa0475080:CDS 35.0%
AAATTAATGACCAATTGGGC+TGG + chr3_3:78153459-78153478 Msa0475080:CDS 35.0%
TACTCCATGGAATCAAAACT+GGG - chr3_3:78153491-78153510 None:intergenic 35.0%
ACAATAACAGCCTTTCAGAA+AGG + chr3_3:78151644-78151663 Msa0475080:five_prime_UTR 35.0%
ATCAGAATTGAGTTTGGGAA+TGG - chr3_3:78151820-78151839 None:intergenic 35.0%
AAGAGATTAGGTAGGAACTT+TGG - chr3_3:78151846-78151865 None:intergenic 35.0%
!! TTTTGACTGAGAAAAAGGAG+TGG - chr3_3:78151961-78151980 None:intergenic 35.0%
CAGTCAAAAAACTTGCAACT+TGG + chr3_3:78151972-78151991 Msa0475080:CDS 35.0%
! CTGATTTTTCTGCAAGAGAA+AGG - chr3_3:78152101-78152120 None:intergenic 35.0%
!! TGGATTTGTTGATATGCAAC+CGG - chr3_3:78152144-78152163 None:intergenic 35.0%
! GCATTATCCACTGAATTTTC+AGG - chr3_3:78152200-78152219 None:intergenic 35.0%
TTCAGTGGATAATGCTATTC+AGG + chr3_3:78152205-78152224 Msa0475080:CDS 35.0%
TGTGTTAGAATTACCATCTG+GGG - chr3_3:78152376-78152395 None:intergenic 35.0%
CTGTGTTAGAATTACCATCT+GGG - chr3_3:78152377-78152396 None:intergenic 35.0%
ACTGTGTTAGAATTACCATC+TGG - chr3_3:78152378-78152397 None:intergenic 35.0%
GCAAATAACAACAACACCAA+TGG - chr3_3:78152420-78152439 None:intergenic 35.0%
! AGGCATTGTATATATGTGCT+TGG - chr3_3:78152652-78152671 None:intergenic 35.0%
! TCTAAATTTTGTAGGGCATG+TGG - chr3_3:78152709-78152728 None:intergenic 35.0%
AAAGTTAGCTCGTAAGATGA+AGG + chr3_3:78152767-78152786 Msa0475080:intron 35.0%
CTTAGGAACATTGTCAATGT+GGG + chr3_3:78152815-78152834 Msa0475080:intron 35.0%
TTAACCGTTCCTTATTGTCT+CGG - chr3_3:78153023-78153042 None:intergenic 35.0%
TACTGAACCCTACATTGAAT+CGG - chr3_3:78153207-78153226 None:intergenic 35.0%
GGTTCAGTAAATTAACCCAT+TGG + chr3_3:78153218-78153237 Msa0475080:intron 35.0%
! CTAGTAGCTTGTAAAACCAA+TGG - chr3_3:78153237-78153256 None:intergenic 35.0%
!!! CATTGGTTTTACAAGCTACT+AGG + chr3_3:78153235-78153254 Msa0475080:intron 35.0%
TAGAGACATACTTGAGTTTC+TGG + chr3_3:78153328-78153347 Msa0475080:CDS 35.0%
!! ATACTTGAGTTTCTGGTGAA+AGG + chr3_3:78153335-78153354 Msa0475080:CDS 35.0%
TACTGCATTTGGAGATTCAA+AGG + chr3_3:78153415-78153434 Msa0475080:CDS 35.0%
ACTGCATTTGGAGATTCAAA+GGG + chr3_3:78153416-78153435 Msa0475080:CDS 35.0%
AAATTAATGACCAATTGGGC+TGG + chr3_3:78153459-78153478 Msa0475080:CDS 35.0%
TACTCCATGGAATCAAAACT+GGG - chr3_3:78153491-78153510 None:intergenic 35.0%
!!! TCTTTTTCAGCCATAGGTGA+CGG - chr3_3:78151691-78151710 None:intergenic 40.0%
CACCTATGGCTGAAAAAGAA+TGG + chr3_3:78151692-78151711 Msa0475080:five_prime_UTR 40.0%
!!! CTCCATTCTTTTTCAGCCAT+AGG - chr3_3:78151697-78151716 None:intergenic 40.0%
AACAAACATGATGCAGTGAG+TGG + chr3_3:78151721-78151740 Msa0475080:five_prime_UTR 40.0%
TTAGTGTGAGTTTGAGGAAG+AGG - chr3_3:78151795-78151814 None:intergenic 40.0%
! ATGGTGTTAGTGTGAGTTTG+AGG - chr3_3:78151801-78151820 None:intergenic 40.0%
CTAGAGAGAAGAGATTAGGT+AGG - chr3_3:78151854-78151873 None:intergenic 40.0%
ATGGCTAGAGAGAAGAGATT+AGG - chr3_3:78151858-78151877 None:intergenic 40.0%
AAAAGGAGTGGTACTAAGAG+AGG - chr3_3:78151949-78151968 None:intergenic 40.0%
TGCAACCGGGATTTATTGAT+GGG - chr3_3:78152130-78152149 None:intergenic 40.0%
ATGCAACCGGGATTTATTGA+TGG - chr3_3:78152131-78152150 None:intergenic 40.0%
!! GGATTTGTTGATATGCAACC+GGG - chr3_3:78152143-78152162 None:intergenic 40.0%
AGGTTTCTAAACCATTCACG+AGG + chr3_3:78152225-78152244 Msa0475080:intron 40.0%
ACTTTCTGAATCCTCGTGAA+TGG - chr3_3:78152239-78152258 None:intergenic 40.0%
AAATGTGAAGTTTCAGCCTG+TGG + chr3_3:78152344-78152363 Msa0475080:CDS 40.0%
AGTCTTAGTCCCTCAATTGA+TGG - chr3_3:78152554-78152573 None:intergenic 40.0%
TTTGTAGGGCATGTGGAAAT+CGG - chr3_3:78152702-78152721 None:intergenic 40.0%
CACATAACATTGCACAGCTT+AGG + chr3_3:78152798-78152817 Msa0475080:intron 40.0%
GCTTAGGAACATTGTCAATG+TGG + chr3_3:78152814-78152833 Msa0475080:intron 40.0%
TAACCGTTCCTTATTGTCTC+GGG - chr3_3:78153022-78153041 None:intergenic 40.0%
AGCAGTTGAACTGTCTAGTT+TGG - chr3_3:78153075-78153094 None:intergenic 40.0%
AATCAGCACTGTCTACTGTT+AGG + chr3_3:78153104-78153123 Msa0475080:intron 40.0%
AAATCAAGACGAAACCGCAA+CGG - chr3_3:78153144-78153163 None:intergenic 40.0%
ATTGAATCGGAAAGACCTCT+AGG - chr3_3:78153194-78153213 None:intergenic 40.0%
AGGTCTTTCCGATTCAATGT+AGG + chr3_3:78153196-78153215 Msa0475080:intron 40.0%
GGTCTTTCCGATTCAATGTA+GGG + chr3_3:78153197-78153216 Msa0475080:intron 40.0%
TATCTGCAAGCTGAAGTTGA+TGG + chr3_3:78153296-78153315 Msa0475080:CDS 40.0%
! TTTTGCTGCCATACACCTAA+AGG - chr3_3:78153372-78153391 None:intergenic 40.0%
TACCCTTTCACTACTGCATT+TGG + chr3_3:78153404-78153423 Msa0475080:CDS 40.0%
CTCCAAATGCAGTAGTGAAA+GGG - chr3_3:78153409-78153428 None:intergenic 40.0%
TCTCCAAATGCAGTAGTGAA+AGG - chr3_3:78153410-78153429 None:intergenic 40.0%
CTACTCCATGGAATCAAAAC+TGG - chr3_3:78153492-78153511 None:intergenic 40.0%
!!! TCATGGCCTTTGTTGTTTTG+CGG + chr3_3:78153602-78153621 Msa0475080:three_prime_UTR 40.0%
AAGATAATCATCGCACGGTT+AGG - chr3_3:78153727-78153746 None:intergenic 40.0%
GGACTAAGATAATCATCGCA+CGG - chr3_3:78153732-78153751 None:intergenic 40.0%
!!! TCTTTTTCAGCCATAGGTGA+CGG - chr3_3:78151691-78151710 None:intergenic 40.0%
CACCTATGGCTGAAAAAGAA+TGG + chr3_3:78151692-78151711 Msa0475080:five_prime_UTR 40.0%
!!! CTCCATTCTTTTTCAGCCAT+AGG - chr3_3:78151697-78151716 None:intergenic 40.0%
AACAAACATGATGCAGTGAG+TGG + chr3_3:78151721-78151740 Msa0475080:five_prime_UTR 40.0%
TTAGTGTGAGTTTGAGGAAG+AGG - chr3_3:78151795-78151814 None:intergenic 40.0%
! ATGGTGTTAGTGTGAGTTTG+AGG - chr3_3:78151801-78151820 None:intergenic 40.0%
CTAGAGAGAAGAGATTAGGT+AGG - chr3_3:78151854-78151873 None:intergenic 40.0%
ATGGCTAGAGAGAAGAGATT+AGG - chr3_3:78151858-78151877 None:intergenic 40.0%
AAAAGGAGTGGTACTAAGAG+AGG - chr3_3:78151949-78151968 None:intergenic 40.0%
TGCAACCGGGATTTATTGAT+GGG - chr3_3:78152130-78152149 None:intergenic 40.0%
ATGCAACCGGGATTTATTGA+TGG - chr3_3:78152131-78152150 None:intergenic 40.0%
!! GGATTTGTTGATATGCAACC+GGG - chr3_3:78152143-78152162 None:intergenic 40.0%
AGGTTTCTAAACCATTCACG+AGG + chr3_3:78152225-78152244 Msa0475080:intron 40.0%
ACTTTCTGAATCCTCGTGAA+TGG - chr3_3:78152239-78152258 None:intergenic 40.0%
AAATGTGAAGTTTCAGCCTG+TGG + chr3_3:78152344-78152363 Msa0475080:CDS 40.0%
AGTCTTAGTCCCTCAATTGA+TGG - chr3_3:78152554-78152573 None:intergenic 40.0%
TTTGTAGGGCATGTGGAAAT+CGG - chr3_3:78152702-78152721 None:intergenic 40.0%
CACATAACATTGCACAGCTT+AGG + chr3_3:78152798-78152817 Msa0475080:intron 40.0%
GCTTAGGAACATTGTCAATG+TGG + chr3_3:78152814-78152833 Msa0475080:intron 40.0%
TAACCGTTCCTTATTGTCTC+GGG - chr3_3:78153022-78153041 None:intergenic 40.0%
AGCAGTTGAACTGTCTAGTT+TGG - chr3_3:78153075-78153094 None:intergenic 40.0%
AATCAGCACTGTCTACTGTT+AGG + chr3_3:78153104-78153123 Msa0475080:intron 40.0%
AAATCAAGACGAAACCGCAA+CGG - chr3_3:78153144-78153163 None:intergenic 40.0%
ATTGAATCGGAAAGACCTCT+AGG - chr3_3:78153194-78153213 None:intergenic 40.0%
AGGTCTTTCCGATTCAATGT+AGG + chr3_3:78153196-78153215 Msa0475080:intron 40.0%
GGTCTTTCCGATTCAATGTA+GGG + chr3_3:78153197-78153216 Msa0475080:intron 40.0%
TATCTGCAAGCTGAAGTTGA+TGG + chr3_3:78153296-78153315 Msa0475080:CDS 40.0%
! TTTTGCTGCCATACACCTAA+AGG - chr3_3:78153372-78153391 None:intergenic 40.0%
TACCCTTTCACTACTGCATT+TGG + chr3_3:78153404-78153423 Msa0475080:CDS 40.0%
CTCCAAATGCAGTAGTGAAA+GGG - chr3_3:78153409-78153428 None:intergenic 40.0%
TCTCCAAATGCAGTAGTGAA+AGG - chr3_3:78153410-78153429 None:intergenic 40.0%
CTACTCCATGGAATCAAAAC+TGG - chr3_3:78153492-78153511 None:intergenic 40.0%
!!! TCATGGCCTTTGTTGTTTTG+CGG + chr3_3:78153602-78153621 Msa0475080:three_prime_UTR 40.0%
AAGATAATCATCGCACGGTT+AGG - chr3_3:78153727-78153746 None:intergenic 40.0%
GGACTAAGATAATCATCGCA+CGG - chr3_3:78153732-78153751 None:intergenic 40.0%
AACAGAACAACCGTCACCTA+TGG + chr3_3:78151678-78151697 Msa0475080:five_prime_UTR 45.0%
ACATGATGCAGTGAGTGGAT+AGG + chr3_3:78151726-78151745 Msa0475080:five_prime_UTR 45.0%
TGTGAGTTTGAGGAAGAGGA+TGG - chr3_3:78151791-78151810 None:intergenic 45.0%
TGGTACTAAGAGAGGTTGGA+GGG - chr3_3:78151941-78151960 None:intergenic 45.0%
CCTTGCCCATCAATAAATCC+CGG + chr3_3:78152122-78152141 Msa0475080:CDS 45.0%
!! GAATTTTCAGGAACCGTCCA+AGG - chr3_3:78152188-78152207 None:intergenic 45.0%
GACGGTTCCTGAAAATTCAG+TGG + chr3_3:78152190-78152209 Msa0475080:CDS 45.0%
TTATTTGAACGGTCCCGTTG+CGG + chr3_3:78153127-78153146 Msa0475080:intron 45.0%
AATCAAGACGAAACCGCAAC+GGG - chr3_3:78153143-78153162 None:intergenic 45.0%
!! GTTTCTGGTGAAAGGTGATG+TGG + chr3_3:78153343-78153362 Msa0475080:CDS 45.0%
AAGGTGATGTGGTTGCCTTT+AGG + chr3_3:78153354-78153373 Msa0475080:CDS 45.0%
TGTGGTTGCCTTTAGGTGTA+TGG + chr3_3:78153361-78153380 Msa0475080:CDS 45.0%
TGGAGATTCAAAGGGTCAAG+AGG + chr3_3:78153424-78153443 Msa0475080:CDS 45.0%
!!! TGCTCCCAGTTTTGATTCCA+TGG + chr3_3:78153484-78153503 Msa0475080:CDS 45.0%
GCTTAGCCGCAAAACAACAA+AGG - chr3_3:78153611-78153630 None:intergenic 45.0%
CGGTTAGGCTAAGTGAAATG+CGG - chr3_3:78153712-78153731 None:intergenic 45.0%
AACAGAACAACCGTCACCTA+TGG + chr3_3:78151678-78151697 Msa0475080:five_prime_UTR 45.0%
ACATGATGCAGTGAGTGGAT+AGG + chr3_3:78151726-78151745 Msa0475080:five_prime_UTR 45.0%
TGTGAGTTTGAGGAAGAGGA+TGG - chr3_3:78151791-78151810 None:intergenic 45.0%
TGGTACTAAGAGAGGTTGGA+GGG - chr3_3:78151941-78151960 None:intergenic 45.0%
CCTTGCCCATCAATAAATCC+CGG + chr3_3:78152122-78152141 Msa0475080:CDS 45.0%
!! GAATTTTCAGGAACCGTCCA+AGG - chr3_3:78152188-78152207 None:intergenic 45.0%
GACGGTTCCTGAAAATTCAG+TGG + chr3_3:78152190-78152209 Msa0475080:CDS 45.0%
TTATTTGAACGGTCCCGTTG+CGG + chr3_3:78153127-78153146 Msa0475080:intron 45.0%
AATCAAGACGAAACCGCAAC+GGG - chr3_3:78153143-78153162 None:intergenic 45.0%
!! GTTTCTGGTGAAAGGTGATG+TGG + chr3_3:78153343-78153362 Msa0475080:CDS 45.0%
AAGGTGATGTGGTTGCCTTT+AGG + chr3_3:78153354-78153373 Msa0475080:CDS 45.0%
TGTGGTTGCCTTTAGGTGTA+TGG + chr3_3:78153361-78153380 Msa0475080:CDS 45.0%
TGGAGATTCAAAGGGTCAAG+AGG + chr3_3:78153424-78153443 Msa0475080:CDS 45.0%
!!! TGCTCCCAGTTTTGATTCCA+TGG + chr3_3:78153484-78153503 Msa0475080:CDS 45.0%
GCTTAGCCGCAAAACAACAA+AGG - chr3_3:78153611-78153630 None:intergenic 45.0%
CGGTTAGGCTAAGTGAAATG+CGG - chr3_3:78153712-78153731 None:intergenic 45.0%
!! AAAGAAAAATATAATTTATA+AGG - chr3_3:78151611-78151630 None:intergenic 5.0%
GGGATTGCATGAGAAGGTAG+TGG - chr3_3:78151900-78151919 None:intergenic 50.0%
AGGGAAGGGATTGCATGAGA+AGG - chr3_3:78151906-78151925 None:intergenic 50.0%
GGGGTTGAGAATTGAGGGAA+GGG - chr3_3:78151920-78151939 None:intergenic 50.0%
TGGAGGGGGTTGAGAATTGA+GGG - chr3_3:78151925-78151944 None:intergenic 50.0%
TTGGAGGGGGTTGAGAATTG+AGG - chr3_3:78151926-78151945 None:intergenic 50.0%
GTACTAAGAGAGGTTGGAGG+GGG - chr3_3:78151939-78151958 None:intergenic 50.0%
GGTACTAAGAGAGGTTGGAG+GGG - chr3_3:78151940-78151959 None:intergenic 50.0%
GTGGTACTAAGAGAGGTTGG+AGG - chr3_3:78151942-78151961 None:intergenic 50.0%
GGAGTGGTACTAAGAGAGGT+TGG - chr3_3:78151945-78151964 None:intergenic 50.0%
! CCGGGATTTATTGATGGGCA+AGG - chr3_3:78152125-78152144 None:intergenic 50.0%
GCCTATGCTTACGCCTAACA+CGG + chr3_3:78152668-78152687 Msa0475080:intron 50.0%
CCTATGCTTACGCCTAACAC+GGG + chr3_3:78152669-78152688 Msa0475080:intron 50.0%
AGGCCCGAGACAATAAGGAA+CGG + chr3_3:78153016-78153035 Msa0475080:intron 50.0%
GTTGTGGAACCATGACCTAG+AGG + chr3_3:78153176-78153195 Msa0475080:intron 50.0%
TCGGAAAGACCTCTAGGTCA+TGG - chr3_3:78153188-78153207 None:intergenic 50.0%
GGGATTGCATGAGAAGGTAG+TGG - chr3_3:78151900-78151919 None:intergenic 50.0%
AGGGAAGGGATTGCATGAGA+AGG - chr3_3:78151906-78151925 None:intergenic 50.0%
GGGGTTGAGAATTGAGGGAA+GGG - chr3_3:78151920-78151939 None:intergenic 50.0%
TGGAGGGGGTTGAGAATTGA+GGG - chr3_3:78151925-78151944 None:intergenic 50.0%
TTGGAGGGGGTTGAGAATTG+AGG - chr3_3:78151926-78151945 None:intergenic 50.0%
GTACTAAGAGAGGTTGGAGG+GGG - chr3_3:78151939-78151958 None:intergenic 50.0%
GGTACTAAGAGAGGTTGGAG+GGG - chr3_3:78151940-78151959 None:intergenic 50.0%
GTGGTACTAAGAGAGGTTGG+AGG - chr3_3:78151942-78151961 None:intergenic 50.0%
GGAGTGGTACTAAGAGAGGT+TGG - chr3_3:78151945-78151964 None:intergenic 50.0%
! CCGGGATTTATTGATGGGCA+AGG - chr3_3:78152125-78152144 None:intergenic 50.0%
GCCTATGCTTACGCCTAACA+CGG + chr3_3:78152668-78152687 Msa0475080:intron 50.0%
CCTATGCTTACGCCTAACAC+GGG + chr3_3:78152669-78152688 Msa0475080:intron 50.0%
AGGCCCGAGACAATAAGGAA+CGG + chr3_3:78153016-78153035 Msa0475080:intron 50.0%
GTTGTGGAACCATGACCTAG+AGG + chr3_3:78153176-78153195 Msa0475080:intron 50.0%
TCGGAAAGACCTCTAGGTCA+TGG - chr3_3:78153188-78153207 None:intergenic 50.0%
GGGGGTTGAGAATTGAGGGA+AGG - chr3_3:78151921-78151940 None:intergenic 55.0%
! CCATCTGGGGTATCTTCCAC+AGG - chr3_3:78152363-78152382 None:intergenic 55.0%
CCTGTGGAAGATACCCCAGA+TGG + chr3_3:78152360-78152379 Msa0475080:CDS 55.0%
CCCGTGTTAGGCGTAAGCAT+AGG - chr3_3:78152672-78152691 None:intergenic 55.0%
GGCATGTGGAAATCGGACCT+AGG - chr3_3:78152695-78152714 None:intergenic 55.0%
AGGTCAGGCCCGAGACAATA+AGG + chr3_3:78153011-78153030 Msa0475080:intron 55.0%
! TGGGAGCATACCAGCCCAAT+TGG - chr3_3:78153472-78153491 None:intergenic 55.0%
GGGGGTTGAGAATTGAGGGA+AGG - chr3_3:78151921-78151940 None:intergenic 55.0%
! CCATCTGGGGTATCTTCCAC+AGG - chr3_3:78152363-78152382 None:intergenic 55.0%
CCTGTGGAAGATACCCCAGA+TGG + chr3_3:78152360-78152379 Msa0475080:CDS 55.0%
CCCGTGTTAGGCGTAAGCAT+AGG - chr3_3:78152672-78152691 None:intergenic 55.0%
GGCATGTGGAAATCGGACCT+AGG - chr3_3:78152695-78152714 None:intergenic 55.0%
AGGTCAGGCCCGAGACAATA+AGG + chr3_3:78153011-78153030 Msa0475080:intron 55.0%
! TGGGAGCATACCAGCCCAAT+TGG - chr3_3:78153472-78153491 None:intergenic 55.0%
CTTACGCCTAACACGGGCCT+AGG + chr3_3:78152675-78152694 Msa0475080:intron 60.0%
ATCGGACCTAGGCCCGTGTT+AGG - chr3_3:78152684-78152703 None:intergenic 60.0%
CTTACGCCTAACACGGGCCT+AGG + chr3_3:78152675-78152694 Msa0475080:intron 60.0%
ATCGGACCTAGGCCCGTGTT+AGG - chr3_3:78152684-78152703 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 78151609 78153771 78151609 ID=Msa0475080;Name=Msa0475080
chr3_3 mRNA 78151609 78153771 78151609 ID=Msa0475080-mRNA-1;Parent=Msa0475080;Name=Msa0475080-mRNA-1;_AED=0.08;_eAED=0.08;_QI=156|1|1|1|1|1|4|260|215
chr3_3 exon 78151609 78152006 78151609 ID=Msa0475080-mRNA-1:exon:20997;Parent=Msa0475080-mRNA-1
chr3_3 exon 78152112 78152226 78152112 ID=Msa0475080-mRNA-1:exon:20998;Parent=Msa0475080-mRNA-1
chr3_3 exon 78152312 78152381 78152312 ID=Msa0475080-mRNA-1:exon:20999;Parent=Msa0475080-mRNA-1
chr3_3 exon 78153291 78153771 78153291 ID=Msa0475080-mRNA-1:exon:21000;Parent=Msa0475080-mRNA-1
chr3_3 five_prime_UTR 78151609 78151764 78151609 ID=Msa0475080-mRNA-1:five_prime_utr;Parent=Msa0475080-mRNA-1
chr3_3 CDS 78151765 78152006 78151765 ID=Msa0475080-mRNA-1:cds;Parent=Msa0475080-mRNA-1
chr3_3 CDS 78152112 78152226 78152112 ID=Msa0475080-mRNA-1:cds;Parent=Msa0475080-mRNA-1
chr3_3 CDS 78152312 78152381 78152312 ID=Msa0475080-mRNA-1:cds;Parent=Msa0475080-mRNA-1
chr3_3 CDS 78153291 78153511 78153291 ID=Msa0475080-mRNA-1:cds;Parent=Msa0475080-mRNA-1
chr3_3 three_prime_UTR 78153512 78153771 78153512 ID=Msa0475080-mRNA-1:three_prime_utr;Parent=Msa0475080-mRNA-1
Gene Sequence

>Msa0475080

ATGAGTTTGATACTTCGTCTTCTCCATCCTCTTCCTCAAACTCACACTAACACCATTCCCAAACTCAATTCTGATAAACCAAAGTTCCTACCTAATCTCTTCTCTCTAGCCATTGCTGTAACATTAACATCTCCACTACCTTCTCATGCAATCCCTTCCCTCAATTCTCAACCCCCTCCAACCTCTCTTAGTACCACTCCTTTTTCTCAGTCAAAAAACTTGCAACTTGGATTAGAAAATGGAAAAATCAGACCTTGCCCATCAATAAATCCCGGTTGCATATCAACAAATCCAAAGTCATCATCTTTTGATTTTCCTTGGACGGTTCCTGAAAATTCAGTGGATAATGCTATTCAGAGACTGCGTGAAGCAATTCTAGAGACTCAGAAAAATGTGAAGTTTCAGCCTGTGGAAGATACCCCAGATGGACAGTATCTGCAAGCTGAAGTTGATGGAAAATTTGATAGAGACATACTTGAGTTTCTGGTGAAAGGTGATGTGGTTGCCTTTAGGTGTATGGCAGCAAAAGTGACTTATATATACCCTTTCACTACTGCATTTGGAGATTCAAAGGGTCAAGAGGCAAGACTCAAGCAAATTAATGACCAATTGGGCTGGTATGCTCCCAGTTTTGATTCCATGGAGTAG

Protein sequence

>Msa0475080

MSLILRLLHPLPQTHTNTIPKLNSDKPKFLPNLFSLAIAVTLTSPLPSHAIPSLNSQPPPTSLSTTPFSQSKNLQLGLENGKIRPCPSINPGCISTNPKSSSFDFPWTVPENSVDNAIQRLREAILETQKNVKFQPVEDTPDGQYLQAEVDGKFDRDILEFLVKGDVVAFRCMAAKVTYIYPFTTAFGDSKGQEARLKQINDQLGWYAPSFDSME*