AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0577910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0577910 MtrunA17_Chr8g0390971 97.115 416 11 1 1 415 1 416 0.0 840
Msa0577910 MtrunA17_Chr1g0209861 42.094 449 188 17 11 411 9 433 2.93e-82 259
Msa0577910 MtrunA17_Chr5g0431351 42.029 138 53 4 274 399 94 216 1.58e-18 84.0
Msa0577910 MtrunA17_Chr4g0071811 44.660 103 46 1 297 399 293 384 4.42e-18 85.5
Msa0577910 MtrunA17_Chr7g0226451 38.235 170 54 8 276 399 187 351 7.64e-16 78.6
Msa0577910 MtrunA17_Chr4g0072871 49.296 71 34 1 330 400 273 341 3.73e-12 67.4
Msa0577910 MtrunA17_Chr3g0136701 70.455 44 13 0 357 400 232 275 1.19e-11 65.1
Msa0577910 MtrunA17_Chr7g0220721 70.455 44 13 0 357 400 327 370 1.72e-11 65.5
Msa0577910 MtrunA17_Chr1g0150471 68.182 44 14 0 357 400 255 298 1.99e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0577910 AT1G25440.1 43.151 438 160 16 11 399 6 403 4.83e-84 263
Msa0577910 AT1G68520.1 41.745 424 186 14 11 401 6 401 8.09e-81 254
Msa0577910 AT1G73870.1 38.391 435 188 17 1 401 1 389 2.64e-67 219
Msa0577910 AT1G49130.1 44.755 143 58 5 16 151 22 150 3.66e-27 110
Msa0577910 AT1G49130.1 48.113 106 35 2 295 400 236 321 5.01e-18 85.1
Msa0577910 AT1G49130.2 44.755 143 58 5 16 151 15 143 4.59e-27 110
Msa0577910 AT1G49130.2 48.113 106 35 2 295 400 229 314 5.18e-18 84.7
Msa0577910 AT1G07050.1 37.356 174 82 4 235 399 38 193 4.25e-20 88.2
Msa0577910 AT5G57180.2 44.030 134 55 4 269 399 309 425 6.07e-20 91.7
Msa0577910 AT4G25990.1 46.552 116 45 3 285 399 284 383 9.26e-20 90.9
Msa0577910 AT5G14370.1 40.323 124 38 4 294 399 231 336 1.16e-16 81.3
Msa0577910 AT4G25990.2 41.221 131 45 4 285 399 284 398 2.28e-16 80.9
Msa0577910 AT5G57180.1 42.188 128 54 4 269 393 309 419 2.46e-16 80.9
Msa0577910 AT4G25990.3 44.545 110 44 3 285 393 284 377 3.96e-16 80.1
Msa0577910 AT1G07050.2 35.119 168 82 4 235 393 38 187 6.71e-16 76.3
Msa0577910 AT5G57660.1 70.455 44 13 0 357 400 285 328 2.11e-11 65.5
Msa0577910 AT5G24930.1 70.455 44 13 0 357 400 295 338 2.31e-11 65.5
Msa0577910 AT2G24790.1 70.455 44 13 0 357 400 229 272 3.72e-11 63.9
Msa0577910 AT2G24790.1 53.030 66 27 1 16 77 2 67 5.09e-11 63.5
Msa0577910 AT2G24790.2 53.030 66 27 1 16 77 2 67 3.73e-11 63.2

Find 92 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAAACGTCCTTTCATTCT+TGG 0.215353 4_1:-82243661 None:intergenic
TGATTCATGGCAAAACTTAT+TGG 0.234314 4_1:+82243223 Msa0577910:CDS
TCAAATGTTGATGTTATATA+TGG 0.240127 4_1:+82244029 Msa0577910:three_prime_UTR
AACTTGGATTGATTAATATT+TGG 0.252165 4_1:+82243797 Msa0577910:three_prime_UTR
TGATGTTATATATGGTTAAT+TGG 0.276526 4_1:+82244037 Msa0577910:three_prime_UTR
TTGTAAGGAACAATAATAAT+AGG 0.284284 4_1:-82243995 None:intergenic
TTGTCATGGTTGTGACAATT+TGG 0.309873 4_1:+82242368 Msa0577910:CDS
ATCACATGCTCTTGCTGTCT+TGG 0.344245 4_1:-82242292 None:intergenic
ATGGAGAAGTAAGAAGCTTA+AGG 0.355490 4_1:+82243506 Msa0577910:CDS
TTTAATTAGTATAGTACTAA+TGG 0.357285 4_1:+82243924 Msa0577910:three_prime_UTR
TATGATTAAGTAGCTTAGTT+AGG 0.358015 4_1:-82244188 None:intergenic
TTTCAGGGTTCAAGTGTAGA+TGG 0.365142 4_1:+82243487 Msa0577910:intron
GGTTACCTAGTTGGTTATTC+CGG 0.370409 4_1:+82244058 Msa0577910:three_prime_UTR
AAATGAAATGTTAAAGGTTA+AGG 0.373350 4_1:+82242917 Msa0577910:CDS
TCTTCATCACCTCCGAGTTC+AGG 0.373850 4_1:-82242600 None:intergenic
TTCAATCTATCTCTAGCTTC+AGG 0.383752 4_1:+82243901 Msa0577910:three_prime_UTR
TCATGTCAGTGGTAATTAGT+TGG 0.390665 4_1:-82243724 None:intergenic
TGGTTAATTGGTTACCTAGT+TGG 0.403469 4_1:+82244049 Msa0577910:three_prime_UTR
CTTCCACTTGTTCCTGAACT+CGG 0.406110 4_1:+82242588 Msa0577910:CDS
TGGAGAAGTAAGAAGCTTAA+GGG 0.411931 4_1:+82243507 Msa0577910:CDS
TTGAATGTGAACTTCTTGTA+AGG 0.415816 4_1:-82244010 None:intergenic
TCAATTGTGATGATGATTCA+TGG 0.426751 4_1:+82243210 Msa0577910:CDS
TTTACTAGAGTTAATTGCTT+GGG 0.426932 4_1:+82243874 Msa0577910:three_prime_UTR
GATGCAGATGCAGGTGCCTT+GGG 0.430470 4_1:+82242267 Msa0577910:CDS
AAAGGGCTGACATCGAAAAC+TGG 0.442133 4_1:-82242687 None:intergenic
CCTTAGCAGACGCGGTTTGA+AGG 0.445349 4_1:-82242434 None:intergenic
AGAAGATAAGATATGAAGTA+AGG 0.448594 4_1:+82243617 Msa0577910:CDS
ATCAACTAGCTCATAATTGA+AGG 0.456236 4_1:-82243951 None:intergenic
CCTTCAAACCGCGTCTGCTA+AGG 0.473927 4_1:+82242434 Msa0577910:CDS
ACATGAAGAATATCATCAAC+TGG 0.480535 4_1:+82243741 Msa0577910:exon
GTTGAAAGTTTACTTGGTGT+TGG 0.483990 4_1:+82242819 Msa0577910:CDS
ACCTAGTTGGTTATTCCGGC+AGG 0.486903 4_1:+82244062 Msa0577910:three_prime_UTR
TTAATGGGAAGTGGTGGAGA+TGG 0.488245 4_1:+82243535 Msa0577910:CDS
GAGATTCGAGAGAATTCATC+AGG 0.489115 4_1:+82242849 Msa0577910:CDS
TCTTGCTGTCTTGGCTCCCA+AGG 0.495634 4_1:-82242283 None:intergenic
TTATAAACAAGAGAATGAAA+TGG 0.496628 4_1:+82242884 Msa0577910:CDS
TCATCACAATTGAACTTAGG+AGG 0.497589 4_1:-82243200 None:intergenic
CCTTTCAGTAATAGTAGTGT+TGG 0.498513 4_1:+82243053 Msa0577910:CDS
TTGAAAGTTTACTTGGTGTT+GGG 0.498767 4_1:+82242820 Msa0577910:CDS
TGATGCAGATGCAGGTGCCT+TGG 0.503435 4_1:+82242266 Msa0577910:CDS
GCTAATGTTGAAAGTTTACT+TGG 0.513191 4_1:+82242813 Msa0577910:CDS
GGAGGGTTTGCAGTAGTCCA+TGG 0.516903 4_1:-82243182 None:intergenic
AGCAAATTACCAAAAGTACA+TGG 0.521774 4_1:+82242071 None:intergenic
ATGGGAAGTGGTGGAGATGG+AGG 0.526179 4_1:+82243538 Msa0577910:CDS
ATGAAGAGGTTATTACTGAA+TGG 0.526407 4_1:+82243138 Msa0577910:CDS
TACAAGTCTCTAAATCGAAA+GGG 0.527173 4_1:-82242704 None:intergenic
GATGATGCTTTCCTTTGTCA+TGG 0.527738 4_1:+82242354 Msa0577910:CDS
GATTAAGTAGCTTAGTTAGG+AGG 0.529023 4_1:-82244185 None:intergenic
GGAGAAGTAAGAAGCTTAAG+GGG 0.532873 4_1:+82243508 Msa0577910:CDS
ATTAGCAAGTAGACACGAAA+GGG 0.537189 4_1:+82242407 Msa0577910:CDS
TCATCATCACAATTGAACTT+AGG 0.539550 4_1:-82243203 None:intergenic
GTACAAGTCTCTAAATCGAA+AGG 0.540349 4_1:-82242705 None:intergenic
CATCACAATTGAACTTAGGA+GGG 0.544271 4_1:-82243199 None:intergenic
TGATTAATATTTGGTGCATG+TGG 0.544592 4_1:+82243806 Msa0577910:three_prime_UTR
CTTTACTAGAGTTAATTGCT+TGG 0.546275 4_1:+82243873 Msa0577910:three_prime_UTR
GAAGAGAAGCAAGAGTATCA+AGG 0.553110 4_1:+82243560 Msa0577910:CDS
TTTGAGACTAAACTATGAAG+AGG 0.554254 4_1:+82243124 Msa0577910:CDS
GAAAAGAGACCAAGAATGAA+AGG 0.557120 4_1:+82243652 Msa0577910:CDS
GGCAAGGTTCTCCTTCTCCA+TGG 0.557589 4_1:+82243165 Msa0577910:CDS
ATTACTGAATGGAGCAGGCA+AGG 0.558438 4_1:+82243149 Msa0577910:CDS
AGGTTATTACTGAATGGAGC+AGG 0.563538 4_1:+82243144 Msa0577910:CDS
GAAACTAGACAATGTGATGA+AGG 0.569584 4_1:-82242133 None:intergenic
ATGAAAGGTGATGCAGATGC+AGG 0.575851 4_1:+82242258 Msa0577910:CDS
ACAACAACAGCAACGTCTCA+AGG 0.580637 4_1:+82242539 Msa0577910:CDS
ATAGTTCATTAGTAGCCTGC+CGG 0.594378 4_1:-82244077 None:intergenic
CAATTATGAGCTAGTTGATG+TGG 0.594949 4_1:+82243955 Msa0577910:three_prime_UTR
GGGCAATTAATGGGAAGTGG+TGG 0.598711 4_1:+82243529 Msa0577910:CDS
AGTTTGCAGAAAAGCAAACA+TGG 0.598896 4_1:-82243778 None:intergenic
GAAGGAGACACTAGTGTCAG+TGG 0.600992 4_1:-82242115 None:intergenic
GATGATATTCTTCATGTCAG+TGG 0.605262 4_1:-82243735 None:intergenic
CCTCCGAGTTCAGGAACAAG+TGG 0.605265 4_1:-82242591 None:intergenic
TATTAGCAAGTAGACACGAA+AGG 0.608632 4_1:+82242406 Msa0577910:CDS
TTTGCAGTAGTCCATGGAGA+AGG 0.610228 4_1:-82243176 None:intergenic
CCAACACTACTATTACTGAA+AGG 0.612166 4_1:-82243053 None:intergenic
TAACAACAACAGCACAAGCA+TGG 0.618954 4_1:+82242457 Msa0577910:CDS
GCAAATTACCAAAAGTACAT+GGG 0.619720 4_1:+82242072 None:intergenic
TGATATTGATGAGGCTGATG+AGG 0.627860 4_1:+82242644 Msa0577910:CDS
ACTACTTGTTGATATTGATG+AGG 0.630146 4_1:+82242635 Msa0577910:CDS
AATTGTCACAACCATGACAA+AGG 0.630486 4_1:-82242365 None:intergenic
AGTGTATACACTTCAACTAG+TGG 0.636434 4_1:+82244161 Msa0577910:three_prime_UTR
TCAACTAGCTCATAATTGAA+GGG 0.636673 4_1:-82243950 None:intergenic
CCAAAAGTACATGGGCAGAG+AGG 0.637429 4_1:+82242080 None:intergenic
TGTTGTTACCTTAGCAGACG+CGG 0.639555 4_1:-82242442 None:intergenic
CATGGCACAGTGGATTCACA+AGG 0.649315 4_1:+82242475 Msa0577910:CDS
TCTATGATTACAGACATGAA+AGG 0.650216 4_1:+82242243 Msa0577910:exon
GCCTGCCGGAATAACCAACT+AGG 0.660660 4_1:-82244063 None:intergenic
AAGGAGACACTAGTGTCAGT+GGG 0.663141 4_1:-82242114 None:intergenic
CTCGGAGGTGATGAAGAACA+AGG 0.666390 4_1:+82242606 Msa0577910:CDS
CCACTTGTTCCTGAACTCGG+AGG 0.668175 4_1:+82242591 Msa0577910:CDS
GTTTAAGAAGAAGAGCACGT+TGG 0.700628 4_1:+82242319 Msa0577910:CDS
GAGAAGTAAGAAGCTTAAGG+GGG 0.726133 4_1:+82243509 Msa0577910:CDS
ACAGCACAAGCATGGCACAG+TGG 0.751381 4_1:+82242465 Msa0577910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAAATGATTCAATTAA+TGG - chr4_1:82242171-82242190 None:intergenic 15.0%
!!! ATATTTTATTTTAAACGACA+AGG + chr4_1:82243343-82243362 Msa0577910:intron 15.0%
!!! TATTTTATTTTAAACGACAA+GGG + chr4_1:82243344-82243363 Msa0577910:intron 15.0%
!! TTTAATTAGTATAGTACTAA+TGG + chr4_1:82243924-82243943 Msa0577910:three_prime_UTR 15.0%
!! CAAAAAAATGATTCAATTAA+TGG - chr4_1:82242171-82242190 None:intergenic 15.0%
!!! ATATTTTATTTTAAACGACA+AGG + chr4_1:82243343-82243362 Msa0577910:intron 15.0%
!!! TATTTTATTTTAAACGACAA+GGG + chr4_1:82243344-82243363 Msa0577910:intron 15.0%
!! TTTAATTAGTATAGTACTAA+TGG + chr4_1:82243924-82243943 Msa0577910:three_prime_UTR 15.0%
!! TTATAAACAAGAGAATGAAA+TGG + chr4_1:82242884-82242903 Msa0577910:CDS 20.0%
!! ATCCAAAAATGAAATGTTAA+AGG + chr4_1:82242911-82242930 Msa0577910:CDS 20.0%
!!! AACCTTTAACATTTCATTTT+TGG - chr4_1:82242916-82242935 None:intergenic 20.0%
!! AAATGAAATGTTAAAGGTTA+AGG + chr4_1:82242917-82242936 Msa0577910:CDS 20.0%
!!! TTTTGTGAATATTGATTTCA+GGG + chr4_1:82243472-82243491 Msa0577910:intron 20.0%
!! AACTTGGATTGATTAATATT+TGG + chr4_1:82243797-82243816 Msa0577910:three_prime_UTR 20.0%
!! TTGTAAGGAACAATAATAAT+AGG - chr4_1:82243998-82244017 None:intergenic 20.0%
!! TCAAATGTTGATGTTATATA+TGG + chr4_1:82244029-82244048 Msa0577910:three_prime_UTR 20.0%
!! TGATGTTATATATGGTTAAT+TGG + chr4_1:82244037-82244056 Msa0577910:three_prime_UTR 20.0%
!! TTATAAACAAGAGAATGAAA+TGG + chr4_1:82242884-82242903 Msa0577910:CDS 20.0%
!! ATCCAAAAATGAAATGTTAA+AGG + chr4_1:82242911-82242930 Msa0577910:CDS 20.0%
!!! AACCTTTAACATTTCATTTT+TGG - chr4_1:82242916-82242935 None:intergenic 20.0%
!! AAATGAAATGTTAAAGGTTA+AGG + chr4_1:82242917-82242936 Msa0577910:CDS 20.0%
!!! TTTTGTGAATATTGATTTCA+GGG + chr4_1:82243472-82243491 Msa0577910:intron 20.0%
!! AACTTGGATTGATTAATATT+TGG + chr4_1:82243797-82243816 Msa0577910:three_prime_UTR 20.0%
!! TTGTAAGGAACAATAATAAT+AGG - chr4_1:82243998-82244017 None:intergenic 20.0%
!! TCAAATGTTGATGTTATATA+TGG + chr4_1:82244029-82244048 Msa0577910:three_prime_UTR 20.0%
!! TGATGTTATATATGGTTAAT+TGG + chr4_1:82244037-82244056 Msa0577910:three_prime_UTR 20.0%
!!! GTTTTGTGAATATTGATTTC+AGG + chr4_1:82243471-82243490 Msa0577910:intron 25.0%
! AGAAGATAAGATATGAAGTA+AGG + chr4_1:82243617-82243636 Msa0577910:CDS 25.0%
! TTTACTAGAGTTAATTGCTT+GGG + chr4_1:82243874-82243893 Msa0577910:three_prime_UTR 25.0%
!!! GTTTTGTGAATATTGATTTC+AGG + chr4_1:82243471-82243490 Msa0577910:intron 25.0%
! AGAAGATAAGATATGAAGTA+AGG + chr4_1:82243617-82243636 Msa0577910:CDS 25.0%
! TTTACTAGAGTTAATTGCTT+GGG + chr4_1:82243874-82243893 Msa0577910:three_prime_UTR 25.0%
TCTATGATTACAGACATGAA+AGG + chr4_1:82242243-82242262 Msa0577910:exon 30.0%
! ACTACTTGTTGATATTGATG+AGG + chr4_1:82242635-82242654 Msa0577910:CDS 30.0%
TACAAGTCTCTAAATCGAAA+GGG - chr4_1:82242707-82242726 None:intergenic 30.0%
!!! AAATGATGCTGTTGATTTTG+AGG + chr4_1:82242734-82242753 Msa0577910:CDS 30.0%
GCTAATGTTGAAAGTTTACT+TGG + chr4_1:82242813-82242832 Msa0577910:CDS 30.0%
!! TTGAAAGTTTACTTGGTGTT+GGG + chr4_1:82242820-82242839 Msa0577910:CDS 30.0%
! TTTGAGACTAAACTATGAAG+AGG + chr4_1:82243124-82243143 Msa0577910:CDS 30.0%
ATGAAGAGGTTATTACTGAA+TGG + chr4_1:82243138-82243157 Msa0577910:CDS 30.0%
TCATCATCACAATTGAACTT+AGG - chr4_1:82243206-82243225 None:intergenic 30.0%
! TCAATTGTGATGATGATTCA+TGG + chr4_1:82243210-82243229 Msa0577910:CDS 30.0%
TGATTCATGGCAAAACTTAT+TGG + chr4_1:82243223-82243242 Msa0577910:CDS 30.0%
TTCAGTGATAAACAAGTAAG+TGG - chr4_1:82243407-82243426 None:intergenic 30.0%
ACATGAAGAATATCATCAAC+TGG + chr4_1:82243741-82243760 Msa0577910:exon 30.0%
!! TGATTAATATTTGGTGCATG+TGG + chr4_1:82243806-82243825 Msa0577910:three_prime_UTR 30.0%
CTTTACTAGAGTTAATTGCT+TGG + chr4_1:82243873-82243892 Msa0577910:three_prime_UTR 30.0%
TCAACTAGCTCATAATTGAA+GGG - chr4_1:82243953-82243972 None:intergenic 30.0%
ATCAACTAGCTCATAATTGA+AGG - chr4_1:82243954-82243973 None:intergenic 30.0%
TTGAATGTGAACTTCTTGTA+AGG - chr4_1:82244013-82244032 None:intergenic 30.0%
TCTATGATTACAGACATGAA+AGG + chr4_1:82242243-82242262 Msa0577910:exon 30.0%
! ACTACTTGTTGATATTGATG+AGG + chr4_1:82242635-82242654 Msa0577910:CDS 30.0%
TACAAGTCTCTAAATCGAAA+GGG - chr4_1:82242707-82242726 None:intergenic 30.0%
!!! AAATGATGCTGTTGATTTTG+AGG + chr4_1:82242734-82242753 Msa0577910:CDS 30.0%
GCTAATGTTGAAAGTTTACT+TGG + chr4_1:82242813-82242832 Msa0577910:CDS 30.0%
!! TTGAAAGTTTACTTGGTGTT+GGG + chr4_1:82242820-82242839 Msa0577910:CDS 30.0%
! TTTGAGACTAAACTATGAAG+AGG + chr4_1:82243124-82243143 Msa0577910:CDS 30.0%
ATGAAGAGGTTATTACTGAA+TGG + chr4_1:82243138-82243157 Msa0577910:CDS 30.0%
TCATCATCACAATTGAACTT+AGG - chr4_1:82243206-82243225 None:intergenic 30.0%
! TCAATTGTGATGATGATTCA+TGG + chr4_1:82243210-82243229 Msa0577910:CDS 30.0%
TGATTCATGGCAAAACTTAT+TGG + chr4_1:82243223-82243242 Msa0577910:CDS 30.0%
TTCAGTGATAAACAAGTAAG+TGG - chr4_1:82243407-82243426 None:intergenic 30.0%
ACATGAAGAATATCATCAAC+TGG + chr4_1:82243741-82243760 Msa0577910:exon 30.0%
!! TGATTAATATTTGGTGCATG+TGG + chr4_1:82243806-82243825 Msa0577910:three_prime_UTR 30.0%
CTTTACTAGAGTTAATTGCT+TGG + chr4_1:82243873-82243892 Msa0577910:three_prime_UTR 30.0%
TCAACTAGCTCATAATTGAA+GGG - chr4_1:82243953-82243972 None:intergenic 30.0%
ATCAACTAGCTCATAATTGA+AGG - chr4_1:82243954-82243973 None:intergenic 30.0%
TTGAATGTGAACTTCTTGTA+AGG - chr4_1:82244013-82244032 None:intergenic 30.0%
GAAACTAGACAATGTGATGA+AGG - chr4_1:82242136-82242155 None:intergenic 35.0%
AATTGTCACAACCATGACAA+AGG - chr4_1:82242368-82242387 None:intergenic 35.0%
TTGTCATGGTTGTGACAATT+TGG + chr4_1:82242368-82242387 Msa0577910:CDS 35.0%
TATTAGCAAGTAGACACGAA+AGG + chr4_1:82242406-82242425 Msa0577910:CDS 35.0%
ATTAGCAAGTAGACACGAAA+GGG + chr4_1:82242407-82242426 Msa0577910:CDS 35.0%
!! TCGACGAATTTTTGTTGTGA+CGG - chr4_1:82242515-82242534 None:intergenic 35.0%
GTACAAGTCTCTAAATCGAA+AGG - chr4_1:82242708-82242727 None:intergenic 35.0%
!! TTTTGAGGAAATGTGTGACT+TGG + chr4_1:82242749-82242768 Msa0577910:CDS 35.0%
!! GTTGAAAGTTTACTTGGTGT+TGG + chr4_1:82242819-82242838 Msa0577910:CDS 35.0%
! TTTTGACATGACAAGTGATG+AGG + chr4_1:82242968-82242987 Msa0577910:CDS 35.0%
! CAAGTGATGAGGTTTTTCAT+TGG + chr4_1:82242979-82242998 Msa0577910:CDS 35.0%
CCAACACTACTATTACTGAA+AGG - chr4_1:82243056-82243075 None:intergenic 35.0%
CCTTTCAGTAATAGTAGTGT+TGG + chr4_1:82243053-82243072 Msa0577910:CDS 35.0%
CATCACAATTGAACTTAGGA+GGG - chr4_1:82243202-82243221 None:intergenic 35.0%
TCATCACAATTGAACTTAGG+AGG - chr4_1:82243203-82243222 None:intergenic 35.0%
ATGGAGAAGTAAGAAGCTTA+AGG + chr4_1:82243506-82243525 Msa0577910:CDS 35.0%
TGGAGAAGTAAGAAGCTTAA+GGG + chr4_1:82243507-82243526 Msa0577910:CDS 35.0%
GAAAAGAGACCAAGAATGAA+AGG + chr4_1:82243652-82243671 Msa0577910:CDS 35.0%
ACAAAACGTCCTTTCATTCT+TGG - chr4_1:82243664-82243683 None:intergenic 35.0%
!! TGAAAGGACGTTTTGTTAAG+AGG + chr4_1:82243668-82243687 Msa0577910:CDS 35.0%
TCATGTCAGTGGTAATTAGT+TGG - chr4_1:82243727-82243746 None:intergenic 35.0%
GATGATATTCTTCATGTCAG+TGG - chr4_1:82243738-82243757 None:intergenic 35.0%
AGTTTGCAGAAAAGCAAACA+TGG - chr4_1:82243781-82243800 None:intergenic 35.0%
!! TGTTTGCTTTTCTGCAAACT+TGG + chr4_1:82243781-82243800 Msa0577910:three_prime_UTR 35.0%
! TTCAATCTATCTCTAGCTTC+AGG + chr4_1:82243901-82243920 Msa0577910:three_prime_UTR 35.0%
! CAATTATGAGCTAGTTGATG+TGG + chr4_1:82243955-82243974 Msa0577910:three_prime_UTR 35.0%
TGGTTAATTGGTTACCTAGT+TGG + chr4_1:82244049-82244068 Msa0577910:three_prime_UTR 35.0%
AGTGTATACACTTCAACTAG+TGG + chr4_1:82244161-82244180 Msa0577910:three_prime_UTR 35.0%
GAAACTAGACAATGTGATGA+AGG - chr4_1:82242136-82242155 None:intergenic 35.0%
AATTGTCACAACCATGACAA+AGG - chr4_1:82242368-82242387 None:intergenic 35.0%
TTGTCATGGTTGTGACAATT+TGG + chr4_1:82242368-82242387 Msa0577910:CDS 35.0%
TATTAGCAAGTAGACACGAA+AGG + chr4_1:82242406-82242425 Msa0577910:CDS 35.0%
ATTAGCAAGTAGACACGAAA+GGG + chr4_1:82242407-82242426 Msa0577910:CDS 35.0%
!! TCGACGAATTTTTGTTGTGA+CGG - chr4_1:82242515-82242534 None:intergenic 35.0%
GTACAAGTCTCTAAATCGAA+AGG - chr4_1:82242708-82242727 None:intergenic 35.0%
!! TTTTGAGGAAATGTGTGACT+TGG + chr4_1:82242749-82242768 Msa0577910:CDS 35.0%
!! GTTGAAAGTTTACTTGGTGT+TGG + chr4_1:82242819-82242838 Msa0577910:CDS 35.0%
! TTTTGACATGACAAGTGATG+AGG + chr4_1:82242968-82242987 Msa0577910:CDS 35.0%
! CAAGTGATGAGGTTTTTCAT+TGG + chr4_1:82242979-82242998 Msa0577910:CDS 35.0%
CCAACACTACTATTACTGAA+AGG - chr4_1:82243056-82243075 None:intergenic 35.0%
CCTTTCAGTAATAGTAGTGT+TGG + chr4_1:82243053-82243072 Msa0577910:CDS 35.0%
CATCACAATTGAACTTAGGA+GGG - chr4_1:82243202-82243221 None:intergenic 35.0%
TCATCACAATTGAACTTAGG+AGG - chr4_1:82243203-82243222 None:intergenic 35.0%
ATGGAGAAGTAAGAAGCTTA+AGG + chr4_1:82243506-82243525 Msa0577910:CDS 35.0%
TGGAGAAGTAAGAAGCTTAA+GGG + chr4_1:82243507-82243526 Msa0577910:CDS 35.0%
GAAAAGAGACCAAGAATGAA+AGG + chr4_1:82243652-82243671 Msa0577910:CDS 35.0%
ACAAAACGTCCTTTCATTCT+TGG - chr4_1:82243664-82243683 None:intergenic 35.0%
!! TGAAAGGACGTTTTGTTAAG+AGG + chr4_1:82243668-82243687 Msa0577910:CDS 35.0%
TCATGTCAGTGGTAATTAGT+TGG - chr4_1:82243727-82243746 None:intergenic 35.0%
GATGATATTCTTCATGTCAG+TGG - chr4_1:82243738-82243757 None:intergenic 35.0%
AGTTTGCAGAAAAGCAAACA+TGG - chr4_1:82243781-82243800 None:intergenic 35.0%
!! TGTTTGCTTTTCTGCAAACT+TGG + chr4_1:82243781-82243800 Msa0577910:three_prime_UTR 35.0%
! TTCAATCTATCTCTAGCTTC+AGG + chr4_1:82243901-82243920 Msa0577910:three_prime_UTR 35.0%
! CAATTATGAGCTAGTTGATG+TGG + chr4_1:82243955-82243974 Msa0577910:three_prime_UTR 35.0%
TGGTTAATTGGTTACCTAGT+TGG + chr4_1:82244049-82244068 Msa0577910:three_prime_UTR 35.0%
AGTGTATACACTTCAACTAG+TGG + chr4_1:82244161-82244180 Msa0577910:three_prime_UTR 35.0%
! GTTTAAGAAGAAGAGCACGT+TGG + chr4_1:82242319-82242338 Msa0577910:CDS 40.0%
GATGATGCTTTCCTTTGTCA+TGG + chr4_1:82242354-82242373 Msa0577910:CDS 40.0%
TAACAACAACAGCACAAGCA+TGG + chr4_1:82242457-82242476 Msa0577910:CDS 40.0%
!! GACGAATTTTTGTTGTGACG+GGG - chr4_1:82242513-82242532 None:intergenic 40.0%
!! CGACGAATTTTTGTTGTGAC+GGG - chr4_1:82242514-82242533 None:intergenic 40.0%
TGATATTGATGAGGCTGATG+AGG + chr4_1:82242644-82242663 Msa0577910:CDS 40.0%
GAGATTCGAGAGAATTCATC+AGG + chr4_1:82242849-82242868 Msa0577910:CDS 40.0%
AGGTTATTACTGAATGGAGC+AGG + chr4_1:82243144-82243163 Msa0577910:CDS 40.0%
TTTCAGGGTTCAAGTGTAGA+TGG + chr4_1:82243487-82243506 Msa0577910:intron 40.0%
GGAGAAGTAAGAAGCTTAAG+GGG + chr4_1:82243508-82243527 Msa0577910:CDS 40.0%
GAGAAGTAAGAAGCTTAAGG+GGG + chr4_1:82243509-82243528 Msa0577910:CDS 40.0%
AAGCTTAAGGGGGCAATTAA+TGG + chr4_1:82243519-82243538 Msa0577910:CDS 40.0%
AGCTTAAGGGGGCAATTAAT+GGG + chr4_1:82243520-82243539 Msa0577910:CDS 40.0%
!! GAAGAGAAGCAAGAGTATCA+AGG + chr4_1:82243560-82243579 Msa0577910:CDS 40.0%
GGTTACCTAGTTGGTTATTC+CGG + chr4_1:82244058-82244077 Msa0577910:three_prime_UTR 40.0%
ATAGTTCATTAGTAGCCTGC+CGG - chr4_1:82244080-82244099 None:intergenic 40.0%
! GTTTAAGAAGAAGAGCACGT+TGG + chr4_1:82242319-82242338 Msa0577910:CDS 40.0%
GATGATGCTTTCCTTTGTCA+TGG + chr4_1:82242354-82242373 Msa0577910:CDS 40.0%
TAACAACAACAGCACAAGCA+TGG + chr4_1:82242457-82242476 Msa0577910:CDS 40.0%
!! GACGAATTTTTGTTGTGACG+GGG - chr4_1:82242513-82242532 None:intergenic 40.0%
!! CGACGAATTTTTGTTGTGAC+GGG - chr4_1:82242514-82242533 None:intergenic 40.0%
TGATATTGATGAGGCTGATG+AGG + chr4_1:82242644-82242663 Msa0577910:CDS 40.0%
GAGATTCGAGAGAATTCATC+AGG + chr4_1:82242849-82242868 Msa0577910:CDS 40.0%
AGGTTATTACTGAATGGAGC+AGG + chr4_1:82243144-82243163 Msa0577910:CDS 40.0%
TTTCAGGGTTCAAGTGTAGA+TGG + chr4_1:82243487-82243506 Msa0577910:intron 40.0%
GGAGAAGTAAGAAGCTTAAG+GGG + chr4_1:82243508-82243527 Msa0577910:CDS 40.0%
GAGAAGTAAGAAGCTTAAGG+GGG + chr4_1:82243509-82243528 Msa0577910:CDS 40.0%
AAGCTTAAGGGGGCAATTAA+TGG + chr4_1:82243519-82243538 Msa0577910:CDS 40.0%
AGCTTAAGGGGGCAATTAAT+GGG + chr4_1:82243520-82243539 Msa0577910:CDS 40.0%
!! GAAGAGAAGCAAGAGTATCA+AGG + chr4_1:82243560-82243579 Msa0577910:CDS 40.0%
GGTTACCTAGTTGGTTATTC+CGG + chr4_1:82244058-82244077 Msa0577910:three_prime_UTR 40.0%
ATAGTTCATTAGTAGCCTGC+CGG - chr4_1:82244080-82244099 None:intergenic 40.0%
AAGGAGACACTAGTGTCAGT+GGG - chr4_1:82242117-82242136 None:intergenic 45.0%
ATGAAAGGTGATGCAGATGC+AGG + chr4_1:82242258-82242277 Msa0577910:CDS 45.0%
! ATCACATGCTCTTGCTGTCT+TGG - chr4_1:82242295-82242314 None:intergenic 45.0%
TGTTGTTACCTTAGCAGACG+CGG - chr4_1:82242445-82242464 None:intergenic 45.0%
ACAACAACAGCAACGTCTCA+AGG + chr4_1:82242539-82242558 Msa0577910:CDS 45.0%
CTTCCACTTGTTCCTGAACT+CGG + chr4_1:82242588-82242607 Msa0577910:CDS 45.0%
AAAGGGCTGACATCGAAAAC+TGG - chr4_1:82242690-82242709 None:intergenic 45.0%
ATTACTGAATGGAGCAGGCA+AGG + chr4_1:82243149-82243168 Msa0577910:CDS 45.0%
TTTGCAGTAGTCCATGGAGA+AGG - chr4_1:82243179-82243198 None:intergenic 45.0%
GGTTGAATCTCAGTAGATCG+TGG + chr4_1:82243365-82243384 Msa0577910:intron 45.0%
! TTAATGGGAAGTGGTGGAGA+TGG + chr4_1:82243535-82243554 Msa0577910:CDS 45.0%
! AAGAGGACAGCATGTTTTGC+TGG + chr4_1:82243685-82243704 Msa0577910:CDS 45.0%
AAGGAGACACTAGTGTCAGT+GGG - chr4_1:82242117-82242136 None:intergenic 45.0%
ATGAAAGGTGATGCAGATGC+AGG + chr4_1:82242258-82242277 Msa0577910:CDS 45.0%
! ATCACATGCTCTTGCTGTCT+TGG - chr4_1:82242295-82242314 None:intergenic 45.0%
TGTTGTTACCTTAGCAGACG+CGG - chr4_1:82242445-82242464 None:intergenic 45.0%
ACAACAACAGCAACGTCTCA+AGG + chr4_1:82242539-82242558 Msa0577910:CDS 45.0%
CTTCCACTTGTTCCTGAACT+CGG + chr4_1:82242588-82242607 Msa0577910:CDS 45.0%
AAAGGGCTGACATCGAAAAC+TGG - chr4_1:82242690-82242709 None:intergenic 45.0%
ATTACTGAATGGAGCAGGCA+AGG + chr4_1:82243149-82243168 Msa0577910:CDS 45.0%
TTTGCAGTAGTCCATGGAGA+AGG - chr4_1:82243179-82243198 None:intergenic 45.0%
GGTTGAATCTCAGTAGATCG+TGG + chr4_1:82243365-82243384 Msa0577910:intron 45.0%
! TTAATGGGAAGTGGTGGAGA+TGG + chr4_1:82243535-82243554 Msa0577910:CDS 45.0%
! AAGAGGACAGCATGTTTTGC+TGG + chr4_1:82243685-82243704 Msa0577910:CDS 45.0%
GAAGGAGACACTAGTGTCAG+TGG - chr4_1:82242118-82242137 None:intergenic 50.0%
! CATGGCACAGTGGATTCACA+AGG + chr4_1:82242475-82242494 Msa0577910:CDS 50.0%
TCTTCATCACCTCCGAGTTC+AGG - chr4_1:82242603-82242622 None:intergenic 50.0%
CTCGGAGGTGATGAAGAACA+AGG + chr4_1:82242606-82242625 Msa0577910:CDS 50.0%
AGGGGGCAATTAATGGGAAG+TGG + chr4_1:82243526-82243545 Msa0577910:CDS 50.0%
GGGCAATTAATGGGAAGTGG+TGG + chr4_1:82243529-82243548 Msa0577910:CDS 50.0%
! AGGACAGCATGTTTTGCTGG+AGG + chr4_1:82243688-82243707 Msa0577910:CDS 50.0%
ACCTAGTTGGTTATTCCGGC+AGG + chr4_1:82244062-82244081 Msa0577910:three_prime_UTR 50.0%
GAAGGAGACACTAGTGTCAG+TGG - chr4_1:82242118-82242137 None:intergenic 50.0%
! CATGGCACAGTGGATTCACA+AGG + chr4_1:82242475-82242494 Msa0577910:CDS 50.0%
TCTTCATCACCTCCGAGTTC+AGG - chr4_1:82242603-82242622 None:intergenic 50.0%
CTCGGAGGTGATGAAGAACA+AGG + chr4_1:82242606-82242625 Msa0577910:CDS 50.0%
AGGGGGCAATTAATGGGAAG+TGG + chr4_1:82243526-82243545 Msa0577910:CDS 50.0%
GGGCAATTAATGGGAAGTGG+TGG + chr4_1:82243529-82243548 Msa0577910:CDS 50.0%
! AGGACAGCATGTTTTGCTGG+AGG + chr4_1:82243688-82243707 Msa0577910:CDS 50.0%
ACCTAGTTGGTTATTCCGGC+AGG + chr4_1:82244062-82244081 Msa0577910:three_prime_UTR 50.0%
TGATGCAGATGCAGGTGCCT+TGG + chr4_1:82242266-82242285 Msa0577910:CDS 55.0%
GATGCAGATGCAGGTGCCTT+GGG + chr4_1:82242267-82242286 Msa0577910:CDS 55.0%
! TCTTGCTGTCTTGGCTCCCA+AGG - chr4_1:82242286-82242305 None:intergenic 55.0%
CCTTAGCAGACGCGGTTTGA+AGG - chr4_1:82242437-82242456 None:intergenic 55.0%
CCTTCAAACCGCGTCTGCTA+AGG + chr4_1:82242434-82242453 Msa0577910:CDS 55.0%
ACAGCACAAGCATGGCACAG+TGG + chr4_1:82242465-82242484 Msa0577910:CDS 55.0%
CCTCCGAGTTCAGGAACAAG+TGG - chr4_1:82242594-82242613 None:intergenic 55.0%
CCACTTGTTCCTGAACTCGG+AGG + chr4_1:82242591-82242610 Msa0577910:CDS 55.0%
GGCAAGGTTCTCCTTCTCCA+TGG + chr4_1:82243165-82243184 Msa0577910:CDS 55.0%
GGAGGGTTTGCAGTAGTCCA+TGG - chr4_1:82243185-82243204 None:intergenic 55.0%
! ATGGGAAGTGGTGGAGATGG+AGG + chr4_1:82243538-82243557 Msa0577910:CDS 55.0%
GCCTGCCGGAATAACCAACT+AGG - chr4_1:82244066-82244085 None:intergenic 55.0%
TGATGCAGATGCAGGTGCCT+TGG + chr4_1:82242266-82242285 Msa0577910:CDS 55.0%
GATGCAGATGCAGGTGCCTT+GGG + chr4_1:82242267-82242286 Msa0577910:CDS 55.0%
! TCTTGCTGTCTTGGCTCCCA+AGG - chr4_1:82242286-82242305 None:intergenic 55.0%
CCTTAGCAGACGCGGTTTGA+AGG - chr4_1:82242437-82242456 None:intergenic 55.0%
CCTTCAAACCGCGTCTGCTA+AGG + chr4_1:82242434-82242453 Msa0577910:CDS 55.0%
ACAGCACAAGCATGGCACAG+TGG + chr4_1:82242465-82242484 Msa0577910:CDS 55.0%
CCTCCGAGTTCAGGAACAAG+TGG - chr4_1:82242594-82242613 None:intergenic 55.0%
CCACTTGTTCCTGAACTCGG+AGG + chr4_1:82242591-82242610 Msa0577910:CDS 55.0%
GGCAAGGTTCTCCTTCTCCA+TGG + chr4_1:82243165-82243184 Msa0577910:CDS 55.0%
GGAGGGTTTGCAGTAGTCCA+TGG - chr4_1:82243185-82243204 None:intergenic 55.0%
! ATGGGAAGTGGTGGAGATGG+AGG + chr4_1:82243538-82243557 Msa0577910:CDS 55.0%
GCCTGCCGGAATAACCAACT+AGG - chr4_1:82244066-82244085 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 82242086 82244198 82242086 ID=Msa0577910;Name=Msa0577910
chr4_1 mRNA 82242086 82244198 82242086 ID=Msa0577910-mRNA-1;Parent=Msa0577910;Name=Msa0577910-mRNA-1;_AED=0.00;_eAED=0.00;_QI=160|1|1|1|1|1|2|457|415
chr4_1 exon 82242086 82243244 82242086 ID=Msa0577910-mRNA-1:exon:29736;Parent=Msa0577910-mRNA-1
chr4_1 exon 82243493 82244198 82243493 ID=Msa0577910-mRNA-1:exon:29737;Parent=Msa0577910-mRNA-1
chr4_1 five_prime_UTR 82242086 82242245 82242086 ID=Msa0577910-mRNA-1:five_prime_utr;Parent=Msa0577910-mRNA-1
chr4_1 CDS 82242246 82243244 82242246 ID=Msa0577910-mRNA-1:cds;Parent=Msa0577910-mRNA-1
chr4_1 CDS 82243493 82243741 82243493 ID=Msa0577910-mRNA-1:cds;Parent=Msa0577910-mRNA-1
chr4_1 three_prime_UTR 82243742 82244198 82243742 ID=Msa0577910-mRNA-1:three_prime_utr;Parent=Msa0577910-mRNA-1
Gene Sequence

>Msa0577910

ATGATTACAGACATGAAAGGTGATGCAGATGCAGGTGCCTTGGGAGCCAAGACAGCAAGAGCATGTGATAGCTGTTTAAGAAGAAGAGCACGTTGGTTTTGTGCTGCAGATGATGCTTTCCTTTGTCATGGTTGTGACAATTTGGTTCACTCTGCAAATCTATTAGCAAGTAGACACGAAAGGGTTCGCCTTCAAACCGCGTCTGCTAAGGTAACAACAACAGCACAAGCATGGCACAGTGGATTCACAAGGAAAGCAAGAACGCCCCGTCACAACAAAAATTCGTCGATTCAACAACAACAGCAACGTCTCAAGGAAAAAGTTCTTTTCAATACTAGTTTTCTTCCACTTGTTCCTGAACTCGGAGGTGATGAAGAACAAGGACAAGAACTACTTGTTGATATTGATGAGGCTGATGAGGAGCAGTTGCTGTGTCGTGTGCCAGTTTTCGATGTCAGCCCTTTCGATTTAGAGACTTGTACTGTGAAAAATGATGCTGTTGATTTTGAGGAAATGTGTGACTTGGATAGTTTCTGTGAGTTTGATGTTGATCTTGCTGAATTTGCAGCTAATGTTGAAAGTTTACTTGGTGTTGGGAGTAGTGAGATTCGAGAGAATTCATCAGGACAAGTGTTTGATTATAAACAAGAGAATGAAATGGATGCATCCAAAAATGAAATGTTAAAGGTTAAGGATGAAGAACTTGATGATTTAGAATCAGTTTTTGACATGACAAGTGATGAGGTTTTTCATTGGAATATTGATCATAATGATGTATCACTAGCACAACAAGAGAAAGAGTTTATGCCTTTCAGTAATAGTAGTGTTGGTTACAGTGAGAGTGTTATTACTAAAGAAGAAACAAAGAGAGAGAGATTTTTGAGACTAAACTATGAAGAGGTTATTACTGAATGGAGCAGGCAAGGTTCTCCTTCTCCATGGACTACTGCAAACCCTCCTAAGTTCAATTGTGATGATGATTCATGGCAAAACTTATTGGGTTCAAGTGTAGATGGAGAAGTAAGAAGCTTAAGGGGGCAATTAATGGGAAGTGGTGGAGATGGAGGAAGAGAAGCAAGAGTATCAAGGTACAGAGAGAAAAGAAGAACACGTTTATTTGCAAAGAAGATAAGATATGAAGTAAGGAAATTGAATGCAGAAAAGAGACCAAGAATGAAAGGACGTTTTGTTAAGAGGACAGCATGTTTTGCTGGAGGAGCTACTTCTTTTCCAACTAATTACCACTGA

Protein sequence

>Msa0577910

MITDMKGDADAGALGAKTARACDSCLRRRARWFCAADDAFLCHGCDNLVHSANLLASRHERVRLQTASAKVTTTAQAWHSGFTRKARTPRHNKNSSIQQQQQRLKEKVLFNTSFLPLVPELGGDEEQGQELLVDIDEADEEQLLCRVPVFDVSPFDLETCTVKNDAVDFEEMCDLDSFCEFDVDLAEFAANVESLLGVGSSEIRENSSGQVFDYKQENEMDASKNEMLKVKDEELDDLESVFDMTSDEVFHWNIDHNDVSLAQQEKEFMPFSNSSVGYSESVITKEETKRERFLRLNYEEVITEWSRQGSPSPWTTANPPKFNCDDDSWQNLLGSSVDGEVRSLRGQLMGSGGDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTACFAGGATSFPTNYH*