AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1364650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1364650 MtrunA17_Chr7g0245041 92.261 491 12 1 1 465 1 491 0.0 922
Msa1364650 MtrunA17_Chr8g0334531 69.384 503 113 8 1 465 13 512 0.0 619
Msa1364650 MtrunA17_Chr5g0422461 38.107 391 181 9 86 446 106 465 2.66e-79 257
Msa1364650 MtrunA17_Chr7g0245081 70.526 95 2 1 384 452 1 95 2.76e-34 126
Msa1364650 MtrunA17_Chr7g0245091 87.234 47 6 0 284 330 1 47 4.83e-22 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1364650 AT5G01920.1 63.253 498 144 7 1 463 1 494 0.0 573
Msa1364650 AT5G01920.2 63.253 498 144 7 1 463 1 494 0.0 573
Msa1364650 AT1G68830.1 38.168 393 182 9 96 457 101 463 3.30e-74 243

Find 97 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGATTAAACTCATTGATTT+TGG 0.192635 tig0018182:-9418 Msa1364650:CDS
CATAATTCTTTCCAATTCTA+AGG 0.205369 tig0018182:+9383 None:intergenic
AGGAACTTGGCACATGTTTC+AGG 0.208561 tig0018182:+10250 None:intergenic
GCAAGACCAGGTGTTCTTAT+TGG 0.255792 tig0018182:-10971 Msa1364650:CDS
ATTGTTCAATAACAAGTCTT+TGG 0.264615 tig0018182:+11096 None:intergenic
ATTGAAGGGGCTAAAGAATT+TGG 0.281260 tig0018182:-10316 Msa1364650:CDS
TGCTATTGATGCATATCTTT+TGG 0.286774 tig0018182:-10948 Msa1364650:CDS
CAGAATCACTATCAAGGATT+TGG 0.289822 tig0018182:+8302 None:intergenic
GTTAAGAAAGAATTGTTAAA+TGG 0.291124 tig0018182:+11178 None:intergenic
TTGTTCAATAACAAGTCTTT+GGG 0.292907 tig0018182:+11097 None:intergenic
AATTCACAAAAGGTGGAAAA+TGG 0.296536 tig0018182:-10195 Msa1364650:CDS
GGATAAAGTCATTCTTAAAA+AGG 0.305148 tig0018182:-10741 Msa1364650:intron
TGCTTTGAAGAATTTCAATT+TGG 0.305364 tig0018182:-8389 Msa1364650:CDS
TGTTGTTTATTCTGCTGTTT+TGG 0.310233 tig0018182:-10828 Msa1364650:CDS
AAGGTGGAAAATGGCTTGTT+TGG 0.317886 tig0018182:-10186 Msa1364650:CDS
GGATCCAAAGGTGTATAATT+AGG 0.325357 tig0018182:+9358 None:intergenic
CAAAGCAGCTTGAGACCTTA+AGG 0.325974 tig0018182:+8405 None:intergenic
AATTTGGAAATGAGGACATA+TGG 0.340412 tig0018182:-8373 Msa1364650:CDS
AGCAAAGCTGCAATTGGTTC+TGG 0.351901 tig0018182:+9280 None:intergenic
TTTGTTGTGGATAGTTTATC+TGG 0.355447 tig0018182:-10914 Msa1364650:CDS
GAGATAAATATACTTACATT+TGG 0.358088 tig0018182:+7943 None:intergenic
TCGCCACCTAGAAGAAAATA+AGG 0.358254 tig0018182:+8268 None:intergenic
TCTTAAGAGATGTAATGATT+TGG 0.373158 tig0018182:+9509 None:intergenic
TGTAGCTGTTGTAGATAGTA+AGG 0.376206 tig0018182:+11258 None:intergenic
TGTGCCTAATTATACACCTT+TGG 0.381947 tig0018182:-9362 Msa1364650:CDS
TTCTTGATTGGTGGTAAGAT+AGG 0.387351 tig0018182:-10866 Msa1364650:CDS
AGACTGCTTGAGAAAGCTTA+TGG 0.390854 tig0018182:-8140 Msa1364650:three_prime_UTR
TAGAATGATTCTTGTTGAAA+AGG 0.391353 tig0018182:+11149 None:intergenic
AAGAGGAGTGATTTCTTGAT+TGG 0.402107 tig0018182:-10878 Msa1364650:CDS
TAAGTTGGATGCTAAATCTA+AGG 0.404865 tig0018182:-10762 Msa1364650:CDS
CTTAAGAAAATTCACGATAC+TGG 0.413330 tig0018182:-9493 Msa1364650:CDS
GCTCTCACCAATCTTGTGGC+AGG 0.413652 tig0018182:-9260 Msa1364650:intron
AGAATTTCAATTTGGAAATG+AGG 0.423421 tig0018182:-8381 Msa1364650:CDS
TGTGGTAGAACATATAGTTC+AGG 0.425025 tig0018182:+9322 None:intergenic
CAGGTGAAGGTTGGAATTGA+AGG 0.425995 tig0018182:-10331 Msa1364650:CDS
TTGATAGTGATTCTGCTTTG+AGG 0.428315 tig0018182:-8294 Msa1364650:CDS
ATGATGCTTAAGAGTGGAAA+AGG 0.429785 tig0018182:-10785 Msa1364650:CDS
AATAAAACCTGCCACAAGAT+TGG 0.430494 tig0018182:+9253 None:intergenic
GCAGCAACAGACCTTAGAAT+TGG 0.434978 tig0018182:-9394 Msa1364650:CDS
GGTGAGAGCAAAGCTGCAAT+TGG 0.448894 tig0018182:+9274 None:intergenic
AATAAGCTGGAAACAGCTTA+TGG 0.450788 tig0018182:+8101 None:intergenic
GAAACATGTGCCAAGTTCCT+TGG 0.452194 tig0018182:-10247 Msa1364650:CDS
ACGATACTGGCATTGTTCAC+AGG 0.453178 tig0018182:-9480 Msa1364650:CDS
AGTTCAGGAGGACAGTAATC+AGG 0.454008 tig0018182:+9337 None:intergenic
ATGGATATGATTTGAACAAA+TGG 0.455978 tig0018182:-8354 Msa1364650:CDS
AAGATAGGAGAAGGGTCATT+TGG 0.457236 tig0018182:-10851 Msa1364650:CDS
AAATGGCAATACCAACCTTA+AGG 0.473712 tig0018182:-8420 Msa1364650:CDS
GTTTGGATAAGTTTATATAC+CGG 0.480172 tig0018182:-8177 Msa1364650:three_prime_UTR
TACAAAACTTCCAAGGAACT+TGG 0.480257 tig0018182:+10237 None:intergenic
TAAGAGTGGAAAAGGTAAGT+TGG 0.483976 tig0018182:-10777 Msa1364650:CDS
AGGAGTGATTTCTTGATTGG+TGG 0.486103 tig0018182:-10875 Msa1364650:CDS
ACCAATTCACAATTCACAAA+AGG 0.486126 tig0018182:-10205 Msa1364650:CDS
CTTTGCTCTCACCAATCTTG+TGG 0.487689 tig0018182:-9264 Msa1364650:CDS
TGGAAAATGCAGGTGAAGGT+TGG 0.494159 tig0018182:-10340 Msa1364650:intron
TTTATCAGACATGCAGAGGT+TGG 0.500221 tig0018182:-11035 Msa1364650:CDS
ATGACAGATTCTAAGTTTGA+AGG 0.504582 tig0018182:+9601 None:intergenic
AAACAGCTTATGGCATGTAT+AGG 0.505732 tig0018182:+8111 None:intergenic
ATGTTTCGAAATGCGTTGCA+AGG 0.507094 tig0018182:-9580 Msa1364650:CDS
GAAAGAATTGTTAAATGGAG+TGG 0.508408 tig0018182:+11183 None:intergenic
ATTGGTGGTAAGATAGGAGA+AGG 0.514578 tig0018182:-10860 Msa1364650:CDS
CTGGAAGGAGAGATTTGAAG+AGG 0.517706 tig0018182:-10895 Msa1364650:CDS
TATCAGCTACAAAACTTCCA+AGG 0.517815 tig0018182:+10230 None:intergenic
GAGAGCTTACGAAAATAAGC+TGG 0.524527 tig0018182:+8088 None:intergenic
TGACAGATTCTAAGTTTGAA+GGG 0.525444 tig0018182:+9602 None:intergenic
ATGGCTTGTTTGGAAATTTG+AGG 0.527072 tig0018182:-10176 Msa1364650:intron
TCAAAGCAGAATCACTATCA+AGG 0.527398 tig0018182:+8296 None:intergenic
GGATGTAAAGCCTTCCAACT+TGG 0.528793 tig0018182:-9458 Msa1364650:CDS
TTCGTAACAACCAAGTTGGA+AGG 0.529719 tig0018182:+9448 None:intergenic
CGATACTGGCATTGTTCACA+GGG 0.533903 tig0018182:-9479 Msa1364650:CDS
CTATCCACAACAAATTGCAT+TGG 0.535736 tig0018182:+10923 None:intergenic
GGCTCCAATGCAATTTGTTG+TGG 0.536387 tig0018182:-10927 Msa1364650:CDS
TAAGTTTCAGAGTGTGAGTG+AGG 0.537619 tig0018182:-11059 Msa1364650:CDS
TTGTGGATAGTTTATCTGGA+AGG 0.538024 tig0018182:-10910 Msa1364650:CDS
AATTCACAATTCACAAAAGG+TGG 0.543613 tig0018182:-10202 Msa1364650:CDS
TCAACAAGAATCATTCTACA+AGG 0.551400 tig0018182:-11144 Msa1364650:CDS
AGTCTCACCCGTGTTTATGC+CGG 0.555586 tig0018182:+8158 None:intergenic
TGGAATTGTACTCTTGCAAA+TGG 0.555729 tig0018182:-8437 Msa1364650:CDS
GCAGCTTGAGACCTTAAGGT+TGG 0.570427 tig0018182:+8409 None:intergenic
TTATGAGTATGTTGAAGTGT+AGG 0.575012 tig0018182:+11235 None:intergenic
GATATGATTTGAACAAATGG+AGG 0.576550 tig0018182:-8351 Msa1364650:CDS
AGGTGAAGGTTGGAATTGAA+GGG 0.576855 tig0018182:-10330 Msa1364650:CDS
GGATGGATGCACAAGTATGT+TGG 0.578120 tig0018182:+7877 None:intergenic
GGAAGACTTTGTGTTTCTTG+TGG 0.591105 tig0018182:+9304 None:intergenic
TTTATATACCGGCATAAACA+CGG 0.600867 tig0018182:-8166 Msa1364650:three_prime_UTR
AGGATTTATCAGACATGCAG+AGG 0.603674 tig0018182:-11039 Msa1364650:CDS
AATTTGGTGATTGTGAAGAG+TGG 0.607180 tig0018182:-10300 Msa1364650:CDS
AAAGCTGCAATTGGTTCTGG+AGG 0.616137 tig0018182:+9283 None:intergenic
GGACAGTAATCAGGATCCAA+AGG 0.623204 tig0018182:+9346 None:intergenic
AAAGAGATGATGCTTAAGAG+TGG 0.625247 tig0018182:-10791 Msa1364650:CDS
TGTTCAATAACAAGTCTTTG+GGG 0.631808 tig0018182:+11098 None:intergenic
ATAGCACCAATAAGAACACC+TGG 0.641228 tig0018182:+10965 None:intergenic
TTATATACCGGCATAAACAC+GGG 0.644320 tig0018182:-8165 Msa1364650:three_prime_UTR
TTGGTGGTAAGATAGGAGAA+GGG 0.647730 tig0018182:-10859 Msa1364650:CDS
ATATGATTTGAACAAATGGA+GGG 0.648335 tig0018182:-8350 Msa1364650:CDS
GGTGAAGGTTGGAATTGAAG+GGG 0.652761 tig0018182:-10329 Msa1364650:CDS
GGTAGAACATATAGTTCAGG+AGG 0.667620 tig0018182:+9325 None:intergenic
TCATGTAATCAGCAAGAGTG+CGG 0.675765 tig0018182:+9638 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATAATCATTTAATAATT+AGG - tig0018182:10353-10372 Msa1364650:intron 10.0%
!! ATATAAATTATGTAATAAAG+TGG - tig0018182:10715-10734 Msa1364650:intron 10.0%
!!! ATTGAACAATACATTTTATT+TGG - tig0018182:8149-8168 Msa1364650:three_prime_UTR 15.0%
!!! TAATTTAATGGTTTTATTGT+TGG - tig0018182:8554-8573 Msa1364650:intron 15.0%
!!! TTTAACTTTTGTTATGAAAA+TGG + tig0018182:10099-10118 None:intergenic 15.0%
!! GTTAAGAAAGAATTGTTAAA+TGG + tig0018182:8057-8076 None:intergenic 20.0%
!! TTCATTGCTTCTTAATTTAA+TGG - tig0018182:8542-8561 Msa1364650:intron 20.0%
!!! TTTTATTGTTGGAATAGTTA+TGG - tig0018182:8565-8584 Msa1364650:intron 20.0%
!! ATGACTAAAATTAGATACAT+AGG - tig0018182:8809-8828 Msa1364650:intron 20.0%
!! AATTATCTAATAAGACTACT+AGG + tig0018182:9089-9108 None:intergenic 20.0%
!!! ATTAGATAATTTGTATCCAT+AGG - tig0018182:9098-9117 Msa1364650:intron 20.0%
!! TTCTGTTATCCTATTTATAT+AGG - tig0018182:10001-10020 Msa1364650:intron 20.0%
!!! TTCTACTTAAGATATTTCTA+AGG + tig0018182:10279-10298 None:intergenic 20.0%
!! ATTTATATTTCAAACAGACA+AGG + tig0018182:10703-10722 None:intergenic 20.0%
!!! TTATAAATTTTTGGTCTGTT+TGG - tig0018182:11038-11057 Msa1364650:CDS 20.0%
!! GAGATAAATATACTTACATT+TGG + tig0018182:11292-11311 None:intergenic 20.0%
!!! TCATATGTTTTAAAAACAAC+TGG - tig0018182:11328-11347 Msa1364650:five_prime_UTR 20.0%
! TAGAATGATTCTTGTTGAAA+AGG + tig0018182:8086-8105 None:intergenic 25.0%
! TTGTTCAATAACAAGTCTTT+GGG + tig0018182:8138-8157 None:intergenic 25.0%
! ATTGTTCAATAACAAGTCTT+TGG + tig0018182:8139-8158 None:intergenic 25.0%
!!! TTGGAGATTTTACTTTTTGT+TGG - tig0018182:8216-8235 Msa1364650:exon 25.0%
! GGATAAAGTCATTCTTAAAA+AGG - tig0018182:8491-8510 Msa1364650:intron 25.0%
! GTAAATGAAGGATTATAGTA+TGG + tig0018182:9194-9213 None:intergenic 25.0%
!! ATTAGTTCTTGAGTAAATGA+AGG + tig0018182:9206-9225 None:intergenic 25.0%
! ACTATAACAATATAGCATAG+CGG - tig0018182:9303-9322 Msa1364650:CDS 25.0%
! ACGTAACATATACATATCTT+AGG - tig0018182:9513-9532 Msa1364650:CDS 25.0%
! CAATTAGTATAAAGAACAGT+TGG + tig0018182:9549-9568 None:intergenic 25.0%
! TGTTCTTTATACTAATTGCA+GGG - tig0018182:9551-9570 Msa1364650:CDS 25.0%
! TCTTAAGAGATGTAATGATT+TGG + tig0018182:9726-9745 None:intergenic 25.0%
!!! CAGATTAAACTCATTGATTT+TGG - tig0018182:9814-9833 Msa1364650:intron 25.0%
! CATAATTCTTTCCAATTCTA+AGG + tig0018182:9852-9871 None:intergenic 25.0%
! GATGTTATAAAGGCTTAATT+AGG + tig0018182:10045-10064 None:intergenic 25.0%
!! TATCAGCAAAAGAAGTATAT+AGG - tig0018182:10186-10205 Msa1364650:CDS 25.0%
! TGATTCTTCTATCAATATCT+TGG + tig0018182:10212-10231 None:intergenic 25.0%
!! AGAATGCATTAGTAGTATTT+TGG - tig0018182:10245-10264 Msa1364650:CDS 25.0%
! GAATACATATCAAAAAGATC+AGG + tig0018182:10772-10791 None:intergenic 25.0%
!!! TGCTTTGAAGAATTTCAATT+TGG - tig0018182:10843-10862 Msa1364650:CDS 25.0%
! AGAATTTCAATTTGGAAATG+AGG - tig0018182:10851-10870 Msa1364650:CDS 25.0%
! ATGGATATGATTTGAACAAA+TGG - tig0018182:10878-10897 Msa1364650:CDS 25.0%
! ATATGATTTGAACAAATGGA+GGG - tig0018182:10882-10901 Msa1364650:CDS 25.0%
! GTTTGGATAAGTTTATATAC+CGG - tig0018182:11055-11074 Msa1364650:CDS 25.0%
GTCTTAAAAAGTAACGTTCA+TGG - tig0018182:7948-7967 Msa1364650:three_prime_UTR 30.0%
TTATGAGTATGTTGAAGTGT+AGG + tig0018182:8000-8019 None:intergenic 30.0%
GAAAGAATTGTTAAATGGAG+TGG + tig0018182:8052-8071 None:intergenic 30.0%
TCAACAAGAATCATTCTACA+AGG - tig0018182:8088-8107 Msa1364650:three_prime_UTR 30.0%
TGTTCAATAACAAGTCTTTG+GGG + tig0018182:8137-8156 None:intergenic 30.0%
!!! GATTTTACTTTTTGTTGGAC+TGG - tig0018182:8221-8240 Msa1364650:exon 30.0%
! TGCTATTGATGCATATCTTT+TGG - tig0018182:8284-8303 Msa1364650:CDS 30.0%
! TTTGTTGTGGATAGTTTATC+TGG - tig0018182:8318-8337 Msa1364650:CDS 30.0%
!! TGTTGTTTATTCTGCTGTTT+TGG - tig0018182:8404-8423 Msa1364650:CDS 30.0%
! TAAGTTGGATGCTAAATCTA+AGG - tig0018182:8470-8489 Msa1364650:CDS 30.0%
GTCAAATCCTGTGAAAAAAT+CGG + tig0018182:8681-8700 None:intergenic 30.0%
! AAGAATACAAGTTTGTTTCC+TGG + tig0018182:8724-8743 None:intergenic 30.0%
TACATTTCAGTAACAGTGTT+GGG + tig0018182:8776-8795 None:intergenic 30.0%
ATACATTTCAGTAACAGTGT+TGG + tig0018182:8777-8796 None:intergenic 30.0%
CAAAAATAGAAGCTGATTGA+TGG - tig0018182:8872-8891 Msa1364650:intron 30.0%
ACCAATTCACAATTCACAAA+AGG - tig0018182:9027-9046 Msa1364650:intron 30.0%
! ACCTTTTGTGAATTGTGAAT+TGG + tig0018182:9031-9050 None:intergenic 30.0%
AATTCACAATTCACAAAAGG+TGG - tig0018182:9030-9049 Msa1364650:intron 30.0%
AATTCACAAAAGGTGGAAAA+TGG - tig0018182:9037-9056 Msa1364650:intron 30.0%
!!! GTTGGTTTTAACTTTATCCT+TGG - tig0018182:9159-9178 Msa1364650:intron 30.0%
CTGTTCTTTATACTAATTGC+AGG - tig0018182:9550-9569 Msa1364650:CDS 30.0%
TGACAGATTCTAAGTTTGAA+GGG + tig0018182:9633-9652 None:intergenic 30.0%
ATGACAGATTCTAAGTTTGA+AGG + tig0018182:9634-9653 None:intergenic 30.0%
CTTAAGAAAATTCACGATAC+TGG - tig0018182:9739-9758 Msa1364650:intron 30.0%
!!! TTTTTTCGTAACAACCAAGT+TGG + tig0018182:9791-9810 None:intergenic 30.0%
AACTTGGTTGTTACGAAAAA+AGG - tig0018182:9790-9809 Msa1364650:intron 30.0%
ACTTGGTTGTTACGAAAAAA+GGG - tig0018182:9791-9810 Msa1364650:intron 30.0%
CAAACAAGGCCTATATAAAT+AGG + tig0018182:10013-10032 None:intergenic 30.0%
!! CTATTTATATAGGCCTTGTT+TGG - tig0018182:10011-10030 Msa1364650:intron 30.0%
AAGCAATTATATGATATGCG+CGG + tig0018182:10067-10086 None:intergenic 30.0%
TTTACTATTGTGTTTGCATC+AGG - tig0018182:10310-10329 Msa1364650:CDS 30.0%
! TCTAGAAATTCTGAAGAGAA+AGG + tig0018182:10594-10613 None:intergenic 30.0%
! CTTTTTGATATGTATTCTGC+TGG - tig0018182:10775-10794 Msa1364650:CDS 30.0%
AATTTGGAAATGAGGACATA+TGG - tig0018182:10859-10878 Msa1364650:CDS 30.0%
GATATGATTTGAACAAATGG+AGG - tig0018182:10881-10900 Msa1364650:CDS 30.0%
! GTGAGCTGCTTATAAATTTT+TGG - tig0018182:11029-11048 Msa1364650:CDS 30.0%
TTTATATACCGGCATAAACA+CGG - tig0018182:11066-11085 Msa1364650:CDS 30.0%
TGTAGCTGTTGTAGATAGTA+AGG + tig0018182:7977-7996 None:intergenic 35.0%
! TTTTACTTAACTGCAAGACC+AGG - tig0018182:8249-8268 Msa1364650:CDS 35.0%
CTATCCACAACAAATTGCAT+TGG + tig0018182:8312-8331 None:intergenic 35.0%
TTGTGGATAGTTTATCTGGA+AGG - tig0018182:8322-8341 Msa1364650:CDS 35.0%
AAGAGGAGTGATTTCTTGAT+TGG - tig0018182:8354-8373 Msa1364650:CDS 35.0%
! TTCTTGATTGGTGGTAAGAT+AGG - tig0018182:8366-8385 Msa1364650:CDS 35.0%
!!! TTCTGCTGTTTTGGTAACAA+AGG - tig0018182:8413-8432 Msa1364650:CDS 35.0%
AAAGAGATGATGCTTAAGAG+TGG - tig0018182:8441-8460 Msa1364650:CDS 35.0%
ATGATGCTTAAGAGTGGAAA+AGG - tig0018182:8447-8466 Msa1364650:CDS 35.0%
TAAGAGTGGAAAAGGTAAGT+TGG - tig0018182:8455-8474 Msa1364650:CDS 35.0%
TATGAGATTAATCCTCGAGT+TGG - tig0018182:8644-8663 Msa1364650:intron 35.0%
!!! AGAACATCCGATTTTTTCAC+AGG - tig0018182:8671-8690 Msa1364650:intron 35.0%
AAACTTGTATTCTTTGTCCG+AGG - tig0018182:8730-8749 Msa1364650:intron 35.0%
AACTTGTATTCTTTGTCCGA+GGG - tig0018182:8731-8750 Msa1364650:intron 35.0%
! TTGATAACATGATTCTCCCT+CGG + tig0018182:8750-8769 None:intergenic 35.0%
ATTGAAGGGGCTAAAGAATT+TGG - tig0018182:8916-8935 Msa1364650:intron 35.0%
! AATTTGGTGATTGTGAAGAG+TGG - tig0018182:8932-8951 Msa1364650:intron 35.0%
TACAAAACTTCCAAGGAACT+TGG + tig0018182:8998-9017 None:intergenic 35.0%
TATCAGCTACAAAACTTCCA+AGG + tig0018182:9005-9024 None:intergenic 35.0%
!! ATGGCTTGTTTGGAAATTTG+AGG - tig0018182:9056-9075 Msa1364650:intron 35.0%
!!! GTTCTGAACTTTTTCAGTGT+TGG - tig0018182:9141-9160 Msa1364650:intron 35.0%
AACACTAGGTGAAATGTGAT+TGG + tig0018182:9270-9289 None:intergenic 35.0%
!!! TAGCGTCACATTTTTTCACA+GGG + tig0018182:9342-9361 None:intergenic 35.0%
!!! ATAGCGTCACATTTTTTCAC+AGG + tig0018182:9343-9362 None:intergenic 35.0%
! AGCTAGCAAAATCTGGAATA+GGG + tig0018182:9397-9416 None:intergenic 35.0%
! TAGCAGAAAAGGAGAGTTTT+AGG - tig0018182:9441-9460 Msa1364650:CDS 35.0%
TGTGCCTAATTATACACCTT+TGG - tig0018182:9870-9889 Msa1364650:intron 35.0%
! GGATCCAAAGGTGTATAATT+AGG + tig0018182:9877-9896 None:intergenic 35.0%
TGTGGTAGAACATATAGTTC+AGG + tig0018182:9913-9932 None:intergenic 35.0%
AATAAAACCTGCCACAAGAT+TGG + tig0018182:9982-10001 None:intergenic 35.0%
TTAGGCTGTTTATCCAAACA+AGG + tig0018182:10027-10046 None:intergenic 35.0%
TGGAATTGTACTCTTGCAAA+TGG - tig0018182:10795-10814 Msa1364650:CDS 35.0%
AAATGGCAATACCAACCTTA+AGG - tig0018182:10812-10831 Msa1364650:CDS 35.0%
CAGAATCACTATCAAGGATT+TGG + tig0018182:10933-10952 None:intergenic 35.0%
TCAAAGCAGAATCACTATCA+AGG + tig0018182:10939-10958 None:intergenic 35.0%
!! TTGATAGTGATTCTGCTTTG+AGG - tig0018182:10938-10957 Msa1364650:CDS 35.0%
!!! AGGCATCCTTATTTTCTTCT+AGG - tig0018182:10958-10977 Msa1364650:CDS 35.0%
!!! CATCCTTATTTTCTTCTAGG+TGG - tig0018182:10961-10980 Msa1364650:CDS 35.0%
TTATATACCGGCATAAACAC+GGG - tig0018182:11067-11086 Msa1364650:CDS 35.0%
AAACAGCTTATGGCATGTAT+AGG + tig0018182:11124-11143 None:intergenic 35.0%
AATAAGCTGGAAACAGCTTA+TGG + tig0018182:11134-11153 None:intergenic 35.0%
!! CTTATTTTCGTAAGCTCTCT+TGG - tig0018182:11148-11167 Msa1364650:CDS 35.0%
!! AATGGAGTGGTGAGTTTTAG+AGG + tig0018182:8039-8058 None:intergenic 40.0%
TAAGTTTCAGAGTGTGAGTG+AGG - tig0018182:8173-8192 Msa1364650:three_prime_UTR 40.0%
AGGATTTATCAGACATGCAG+AGG - tig0018182:8193-8212 Msa1364650:three_prime_UTR 40.0%
TTTATCAGACATGCAGAGGT+TGG - tig0018182:8197-8216 Msa1364650:three_prime_UTR 40.0%
!!! TACTTTTTGTTGGACTGGCA+TGG - tig0018182:8226-8245 Msa1364650:CDS 40.0%
ATAGCACCAATAAGAACACC+TGG + tig0018182:8270-8289 None:intergenic 40.0%
AGGAGTGATTTCTTGATTGG+TGG - tig0018182:8357-8376 Msa1364650:CDS 40.0%
! ATTGGTGGTAAGATAGGAGA+AGG - tig0018182:8372-8391 Msa1364650:CDS 40.0%
! TTGGTGGTAAGATAGGAGAA+GGG - tig0018182:8373-8392 Msa1364650:CDS 40.0%
AAGATAGGAGAAGGGTCATT+TGG - tig0018182:8381-8400 Msa1364650:CDS 40.0%
! ATTTCAGTAACAGTGTTGGG+AGG + tig0018182:8773-8792 None:intergenic 40.0%
AGCTGATTGATGGAAAATGC+AGG - tig0018182:8882-8901 Msa1364650:intron 40.0%
TTGATGGAAAATGCAGGTGA+AGG - tig0018182:8888-8907 Msa1364650:intron 40.0%
AGGTGAAGGTTGGAATTGAA+GGG - tig0018182:8902-8921 Msa1364650:intron 40.0%
!! AAGGTGGAAAATGGCTTGTT+TGG - tig0018182:9046-9065 Msa1364650:intron 40.0%
GATGATGCATAGGAAACCTA+TGG + tig0018182:9117-9136 None:intergenic 40.0%
! CAGAACTCATGATGATGCAT+AGG + tig0018182:9127-9146 None:intergenic 40.0%
TAGTATGGTACTAGACTCCA+AGG + tig0018182:9179-9198 None:intergenic 40.0%
CACCTAGTGTTGTCAAATAG+CGG - tig0018182:9279-9298 Msa1364650:CDS 40.0%
!!! AGCGTCACATTTTTTCACAG+GGG + tig0018182:9341-9360 None:intergenic 40.0%
! GCTAGCAAAATCTGGAATAG+GGG + tig0018182:9396-9415 None:intergenic 40.0%
! CAGCTAGCAAAATCTGGAAT+AGG + tig0018182:9398-9417 None:intergenic 40.0%
! ATTTTGCTAGCTGATGTGGT+GGG - tig0018182:9405-9424 Msa1364650:CDS 40.0%
TCATGTAATCAGCAAGAGTG+CGG + tig0018182:9597-9616 None:intergenic 40.0%
ATGTTTCGAAATGCGTTGCA+AGG - tig0018182:9652-9671 Msa1364650:intron 40.0%
! TTCGTAACAACCAAGTTGGA+AGG + tig0018182:9787-9806 None:intergenic 40.0%
GGTAGAACATATAGTTCAGG+AGG + tig0018182:9910-9929 None:intergenic 40.0%
GGAAGACTTTGTGTTTCTTG+TGG + tig0018182:9931-9950 None:intergenic 40.0%
GATATGCGCGGATGTTATAA+AGG + tig0018182:10055-10074 None:intergenic 40.0%
CTATTGTGTTTGCATCAGGA+AGG - tig0018182:10314-10333 Msa1364650:CDS 40.0%
CAGGAAGGATATTCAGATTG+TGG - tig0018182:10329-10348 Msa1364650:CDS 40.0%
TACACAGTCTGTTTGCTTGA+GGG + tig0018182:10658-10677 None:intergenic 40.0%
ATACACAGTCTGTTTGCTTG+AGG + tig0018182:10659-10678 None:intergenic 40.0%
TCGCCACCTAGAAGAAAATA+AGG + tig0018182:10967-10986 None:intergenic 40.0%
AGACTGCTTGAGAAAGCTTA+TGG - tig0018182:11092-11111 Msa1364650:CDS 40.0%
GAGAGCTTACGAAAATAAGC+TGG + tig0018182:11147-11166 None:intergenic 40.0%
! TTTTCGTAAGCTCTCTTGGA+TGG - tig0018182:11152-11171 Msa1364650:CDS 40.0%
GCAAGACCAGGTGTTCTTAT+TGG - tig0018182:8261-8280 Msa1364650:CDS 45.0%
!! GGCTCCAATGCAATTTGTTG+TGG - tig0018182:8305-8324 Msa1364650:CDS 45.0%
CTGGAAGGAGAGATTTGAAG+AGG - tig0018182:8337-8356 Msa1364650:CDS 45.0%
GTTTCCTGGAGTCACTCATT+TGG + tig0018182:8710-8729 None:intergenic 45.0%
TGGAAAATGCAGGTGAAGGT+TGG - tig0018182:8892-8911 Msa1364650:intron 45.0%
CAGGTGAAGGTTGGAATTGA+AGG - tig0018182:8901-8920 Msa1364650:intron 45.0%
GGTGAAGGTTGGAATTGAAG+GGG - tig0018182:8903-8922 Msa1364650:intron 45.0%
AGGAACTTGGCACATGTTTC+AGG + tig0018182:8985-9004 None:intergenic 45.0%
GAAACATGTGCCAAGTTCCT+TGG - tig0018182:8985-9004 Msa1364650:intron 45.0%
TGCCGCTATTTGACAACACT+AGG + tig0018182:9284-9303 None:intergenic 45.0%
CCACATCAGCTAGCAAAATC+TGG + tig0018182:9404-9423 None:intergenic 45.0%
! CCAGATTTTGCTAGCTGATG+TGG - tig0018182:9401-9420 Msa1364650:CDS 45.0%
! GATTTTGCTAGCTGATGTGG+TGG - tig0018182:9404-9423 Msa1364650:CDS 45.0%
! TTTTCTGCTAGCTGATGTGG+TGG + tig0018182:9431-9450 None:intergenic 45.0%
ACCACATCAGCTAGCAGAAA+AGG - tig0018182:9430-9449 Msa1364650:CDS 45.0%
! TCCTTTTCTGCTAGCTGATG+TGG + tig0018182:9434-9453 None:intergenic 45.0%
ACGATACTGGCATTGTTCAC+AGG - tig0018182:9752-9771 Msa1364650:intron 45.0%
CGATACTGGCATTGTTCACA+GGG - tig0018182:9753-9772 Msa1364650:intron 45.0%
GGATGTAAAGCCTTCCAACT+TGG - tig0018182:9774-9793 Msa1364650:intron 45.0%
GCAGCAACAGACCTTAGAAT+TGG - tig0018182:9838-9857 Msa1364650:intron 45.0%
GGACAGTAATCAGGATCCAA+AGG + tig0018182:9889-9908 None:intergenic 45.0%
AGTTCAGGAGGACAGTAATC+AGG + tig0018182:9898-9917 None:intergenic 45.0%
!! AAAGCTGCAATTGGTTCTGG+AGG + tig0018182:9952-9971 None:intergenic 45.0%
! AGCAAAGCTGCAATTGGTTC+TGG + tig0018182:9955-9974 None:intergenic 45.0%
CTTTGCTCTCACCAATCTTG+TGG - tig0018182:9968-9987 Msa1364650:intron 45.0%
CAAAGCAGCTTGAGACCTTA+AGG + tig0018182:10830-10849 None:intergenic 45.0%
! TTTTCTTCTAGGTGGCGATC+AGG - tig0018182:10969-10988 Msa1364650:CDS 45.0%
CCTGGAGTCACTCATTTGGA+TGG + tig0018182:8706-8725 None:intergenic 50.0%
CCATCCAAATGAGTGACTCC+AGG - tig0018182:8703-8722 Msa1364650:intron 50.0%
TGCAGGGTTGTCCATATCAC+AGG - tig0018182:9567-9586 Msa1364650:CDS 50.0%
GCAGGGTTGTCCATATCACA+GGG - tig0018182:9568-9587 Msa1364650:CDS 50.0%
GGTGAGAGCAAAGCTGCAAT+TGG + tig0018182:9961-9980 None:intergenic 50.0%
GCAGCTTGAGACCTTAAGGT+TGG + tig0018182:10826-10845 None:intergenic 50.0%
AGTCTCACCCGTGTTTATGC+CGG + tig0018182:11077-11096 None:intergenic 50.0%
GATGTTCTGCTGCCAACTCG+AGG + tig0018182:8659-8678 None:intergenic 55.0%
AGTGCGGTCTCCCTGTGATA+TGG + tig0018182:9581-9600 None:intergenic 55.0%
GCTCTCACCAATCTTGTGGC+AGG - tig0018182:9972-9991 Msa1364650:intron 55.0%
Chromosome Type Strat End Strand Name
tig0018182 gene 7886 11368 7886 ID=Msa1364650;Name=Msa1364650
tig0018182 mRNA 7886 11368 7886 ID=Msa1364650-mRNA-1;Parent=Msa1364650;Name=Msa1364650-mRNA-1;_AED=0.27;_eAED=0.27;_QI=81|1|1|1|1|1|4|336|465
tig0018182 exon 7886 8494 7886 ID=Msa1364650-mRNA-1:exon:14110;Parent=Msa1364650-mRNA-1
tig0018182 exon 9261 9665 9261 ID=Msa1364650-mRNA-1:exon:14109;Parent=Msa1364650-mRNA-1
tig0018182 exon 10177 10350 10177 ID=Msa1364650-mRNA-1:exon:14108;Parent=Msa1364650-mRNA-1
tig0018182 exon 10742 11368 10742 ID=Msa1364650-mRNA-1:exon:14107;Parent=Msa1364650-mRNA-1
tig0018182 five_prime_UTR 11288 11368 11288 ID=Msa1364650-mRNA-1:five_prime_utr;Parent=Msa1364650-mRNA-1
tig0018182 CDS 10742 11287 10742 ID=Msa1364650-mRNA-1:cds;Parent=Msa1364650-mRNA-1
tig0018182 CDS 10177 10350 10177 ID=Msa1364650-mRNA-1:cds;Parent=Msa1364650-mRNA-1
tig0018182 CDS 9261 9665 9261 ID=Msa1364650-mRNA-1:cds;Parent=Msa1364650-mRNA-1
tig0018182 CDS 8222 8494 8222 ID=Msa1364650-mRNA-1:cds;Parent=Msa1364650-mRNA-1
tig0018182 three_prime_UTR 7886 8221 7886 ID=Msa1364650-mRNA-1:three_prime_utr;Parent=Msa1364650-mRNA-1
Gene Sequence

>Msa1364650

ATGGCTTCCTTACTATCTACAACAGCTACACCTACACTTCAACATACTCATAATAAAATCTGTTTTTCTCCTCTAAAACTCACCACTCCATTTAACAATTCTTTCTTAACAACAAACCTTTTCAACAAGAATCATTCTACAAGGTGCAATGCATTTTTTGACATCATCCCCAAAGACTTGTTATTGAACAATACATTTTATTTGGATAAGTTTCAGAGTGTGAGTGAGGATTTATCAGACATGCAGAGGTTGGAGATTTTACTTTTTGTTGGACTGGCATGGTTTTACTTAACTGCAAGACCAGGTGTTCTTATTGGTGCTATTGATGCATATCTTTTGGCTCCAATGCAATTTGTTGTGGATAGTTTATCTGGAAGGAGAGATTTGAAGAGGAGTGATTTCTTGATTGGTGGTAAGATAGGAGAAGGGTCATTTGGTGTTGTTTATTCTGCTGTTTTGGTAACAAAGGATGTGAAAGAGATGATGCTTAAGAGTGGAAAAGGTAAGTTGGATGCTAAATCTAAGGATAAAGTCATTCTTAAAAAGGTGAAGGTTGGAATTGAAGGGGCTAAAGAATTTGGTGATTGTGAAGAGTGGTTCAATTATAGACTCTCAAGAGCAGCTCCTGAAACATGTGCCAAGTTCCTTGGAAGTTTTGTAGCTGATAAAACCAATTCACAATTCACAAAAGGTGGAAAATGGCTTGTTTGGAAATTTGAGGGAGACCGCACTCTTGCTGATTACATGACAGATAAAAACTTCCCTTCAAACTTAGAATCTGTCATGTTTCGAAATGCGTTGCAAGGCGTAGACTCTTCTAAAAGAAATGCACTGATCATCAAGCAAATAATGCGCCAAATCATTACATCTCTTAAGAAAATTCACGATACTGGCATTGTTCACAGGGATGTAAAGCCTTCCAACTTGGTTGTTACGAAAAAAGGGCAGATTAAACTCATTGATTTTGGTGCAGCAACAGACCTTAGAATTGGAAAGAATTATGTGCCTAATTATACACCTTTGGATCCTGATTACTGTCCTCCTGAACTATATGTTCTACCACAAGAAACACAAAGTCTTCCTCCAGAACCAATTGCAGCTTTGCTCTCACCAATCTTGTGGCAGTTAAACAGTCCTGATCTTTTTGATATGTATTCTGCTGGAATTGTACTCTTGCAAATGGCAATACCAACCTTAAGGTCTCAAGCTGCTTTGAAGAATTTCAATTTGGAAATGAGGACATATGGATATGATTTGAACAAATGGAGGGACTCTACTCGCATGAAGTCTAACTTCCAAATCCTTGATAGTGATTCTGCTTTGAGGCATCCTTATTTTCTTCTAGGTGGCGATCAGGCAGCTGCAGTTCTTTCAAAATTCAGCTTTAGCACAAAGTGA

Protein sequence

>Msa1364650

MASLLSTTATPTLQHTHNKICFSPLKLTTPFNNSFLTTNLFNKNHSTRCNAFFDIIPKDLLLNNTFYLDKFQSVSEDLSDMQRLEILLFVGLAWFYLTARPGVLIGAIDAYLLAPMQFVVDSLSGRRDLKRSDFLIGGKIGEGSFGVVYSAVLVTKDVKEMMLKSGKGKLDAKSKDKVILKKVKVGIEGAKEFGDCEEWFNYRLSRAAPETCAKFLGSFVADKTNSQFTKGGKWLVWKFEGDRTLADYMTDKNFPSNLESVMFRNALQGVDSSKRNALIIKQIMRQIITSLKKIHDTGIVHRDVKPSNLVVTKKGQIKLIDFGAATDLRIGKNYVPNYTPLDPDYCPPELYVLPQETQSLPPEPIAALLSPILWQLNSPDLFDMYSAGIVLLQMAIPTLRSQAALKNFNLEMRTYGYDLNKWRDSTRMKSNFQILDSDSALRHPYFLLGGDQAAAVLSKFSFSTK*