AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0985570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0985570 MtrunA17_Chr6g0463901 92.035 339 6 2 1 318 1 339 0.0 636
Msa0985570 MtrunA17_Chr2g0278581 78.507 335 51 2 1 314 1 335 0.0 542
Msa0985570 MtrunA17_Chr7g0241071 46.784 342 143 5 11 314 71 411 1.82e-100 301
Msa0985570 MtrunA17_Chr4g0049821 37.621 311 150 7 32 311 87 384 4.98e-62 202
Msa0985570 MtrunA17_Chr3g0113101 27.451 255 164 7 67 306 116 364 4.97e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0985570 AT1G43670.1 80.236 339 46 2 1 318 1 339 0.0 561
Msa0985570 AT3G54050.2 47.059 340 143 5 11 314 79 417 2.66e-101 304
Msa0985570 AT3G54050.1 47.059 340 143 5 11 314 79 417 2.66e-101 304
Msa0985570 AT5G64380.1 36.656 311 157 7 32 311 89 390 2.03e-61 201
Msa0985570 AT3G55800.1 28.185 259 157 8 67 306 123 371 7.39e-13 68.9

Find 112 sgRNAs with CRISPR-Local

Find 404 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTGGTGGGTTCGATGTTT+TGG 0.164726 6_4:+32224892 None:intergenic
TAAAGTGTATGTTTAGAATT+TGG 0.166521 6_4:-32224775 Msa0985570:five_prime_UTR
TGTTATAGTTCTTTAATTAA+TGG 0.195083 6_4:-32217618 Msa0985570:three_prime_UTR
ATCATAGCTACCAAGAAATA+TGG 0.228525 6_4:+32217835 None:intergenic
TTGCTTAATAACATTGTTCT+TGG 0.232374 6_4:-32224363 Msa0985570:CDS
ACCACTGGAAGTGGTGTTAA+TGG 0.234751 6_4:-32221242 Msa0985570:CDS
GAATAAATCTTGCCTTTCTT+TGG 0.239412 6_4:+32220448 None:intergenic
CCTAACTCACCCTGACATTA+AGG 0.279021 6_4:-32221186 Msa0985570:intron
GAAAGATCTCCCATATTTCT+TGG 0.282491 6_4:-32217845 Msa0985570:CDS
GCAAAGCTCATTGGACTTGC+AGG 0.289654 6_4:-32223012 Msa0985570:CDS
CTTCCCAATGTCCTTCTTGA+TGG 0.290934 6_4:-32218603 Msa0985570:CDS
ACATATATATCTAAAGAATT+TGG 0.301719 6_4:-32224568 Msa0985570:five_prime_UTR
TCAATAGTAACATGTATAAT+TGG 0.308144 6_4:+32217573 None:intergenic
CCTTAATGTCAGGGTGAGTT+AGG 0.309718 6_4:+32221186 None:intergenic
GTAAAATCTCCACGTGATTC+AGG 0.312460 6_4:+32224390 None:intergenic
ATGCATTACCCTTTCCTTGC+CGG 0.313636 6_4:+32218556 None:intergenic
CAAGCATTTATCCAATTGTT+AGG 0.326336 6_4:-32217728 Msa0985570:three_prime_UTR
AATAAATCTTGCCTTTCTTT+GGG 0.339648 6_4:+32220449 None:intergenic
CGATTGATTCATTCATTGAT+TGG 0.344065 6_4:-32224517 Msa0985570:five_prime_UTR
CGTACATAGTTGATTGGTTT+CGG 0.346980 6_4:-32224543 Msa0985570:five_prime_UTR
ATTCAACACAAAACGTGTTA+TGG 0.348871 6_4:+32224428 None:intergenic
CTTTAGTAAAACAATTGTAT+AGG 0.360299 6_4:+32224823 None:intergenic
GTTCATCGTACATTGCTATA+TGG 0.377460 6_4:-32218792 Msa0985570:CDS
AAAGAAAGGCAAGATTTATT+CGG 0.384048 6_4:-32220446 Msa0985570:CDS
TTCACTCTCGACCCTTCTCT+TGG 0.387036 6_4:-32221218 Msa0985570:CDS
CGGAGTATTACCTTAATGTC+AGG 0.406069 6_4:+32221176 None:intergenic
AGTAGGACCATCCCAGTTCT+TGG 0.413154 6_4:+32220408 None:intergenic
ACGAAGGGAACGCCAAGAAC+TGG 0.415047 6_4:-32220420 Msa0985570:CDS
TGCAGGAGAGACCAATGTTC+AGG 0.427688 6_4:-32222995 Msa0985570:intron
CATCATCTATGATTGGTTCA+TGG 0.429120 6_4:+32221453 None:intergenic
TGCAGAACATCATCTATGAT+TGG 0.429779 6_4:+32221446 None:intergenic
ATGTTGGAGGAGCCGTCTAA+TGG 0.431159 6_4:+32221858 None:intergenic
TTGGTACGTACATAGTTGAT+TGG 0.433683 6_4:-32224549 Msa0985570:five_prime_UTR
GCACTTGTTAGCCTAACAAT+TGG 0.436975 6_4:+32217717 None:intergenic
TTTGTCAGCAGGGTACAAAA+AGG 0.440471 6_4:+32218764 None:intergenic
AAATATACATATACATGATA+AGG 0.445418 6_4:+32217671 None:intergenic
GCTGGTCTTGCAAAGCTCAT+TGG 0.453630 6_4:-32223021 Msa0985570:CDS
AATGTCCTTCTTGATGGAAC+AGG 0.459315 6_4:-32218597 Msa0985570:CDS
GACATGAATTGTTATATGTA+GGG 0.461657 6_4:+32224683 None:intergenic
TGTCAATATAATAGCTCCCT+AGG 0.470179 6_4:+32224655 None:intergenic
AGCCTTGCAGAACACCTCAT+TGG 0.474174 6_4:+32222383 None:intergenic
GGCTTTCACCGGCAAGGAAA+GGG 0.474657 6_4:-32218564 Msa0985570:intron
ATATATCTTAGAGACTTTGC+TGG 0.483827 6_4:+32220256 None:intergenic
TCATAGCTACCAAGAAATAT+GGG 0.491600 6_4:+32217836 None:intergenic
GGACATGAATTGTTATATGT+AGG 0.492264 6_4:+32224682 None:intergenic
TTCCAATGAGGTGTTCTGCA+AGG 0.494248 6_4:-32222385 Msa0985570:CDS
AGATGAGGATGCAATATTTG+TGG 0.495684 6_4:-32222236 Msa0985570:CDS
GTCAATATAATAGCTCCCTA+GGG 0.500157 6_4:+32224656 None:intergenic
AACAATGTTATTAAGCAAGA+TGG 0.502314 6_4:+32224368 None:intergenic
GTTCCATCAAGAAGGACATT+GGG 0.503823 6_4:+32218600 None:intergenic
GATGGAACAGGCAGGAGGAC+AGG 0.504743 6_4:-32218585 Msa0985570:CDS
TGCTGCAGAGGCTAAATAAG+AGG 0.508283 6_4:-32217786 Msa0985570:exon
GCTGCTAACATGTTCTTCCC+TGG 0.509552 6_4:+32221422 None:intergenic
AGGCTTTCACCGGCAAGGAA+AGG 0.509795 6_4:-32218565 Msa0985570:CDS
TATAATAGCTCCCTAGGGGC+TGG 0.511813 6_4:+32224661 None:intergenic
AGGATAAACTCGCCAAGAGA+AGG 0.516852 6_4:+32221206 None:intergenic
CAATGTACTATGTGAGGAGA+AGG 0.517762 6_4:+32224864 None:intergenic
AACAACTTTCCACGCTGCTT+AGG 0.518664 6_4:+32222211 None:intergenic
GCAGCTGGTTATTGCATGTA+CGG 0.523788 6_4:-32221404 Msa0985570:CDS
CAATTCATGTCCAGCCCCTA+GGG 0.524735 6_4:-32224671 Msa0985570:five_prime_UTR
ACAATTCATGTCCAGCCCCT+AGG 0.525634 6_4:-32224672 Msa0985570:five_prime_UTR
AAATGCAAGTTTCCAACAGA+TGG 0.529309 6_4:-32220283 Msa0985570:CDS
TAGATGATGTTCTGCAACCA+GGG 0.531413 6_4:-32221439 Msa0985570:CDS
ATGTACTATGTGAGGAGAAG+GGG 0.536988 6_4:+32224866 None:intergenic
TCTTTGCAGATCCCAAAGAA+AGG 0.537179 6_4:-32220460 Msa0985570:intron
CGAAGGGAACGCCAAGAACT+GGG 0.540028 6_4:-32220419 Msa0985570:CDS
TGTTCCATCAAGAAGGACAT+TGG 0.542151 6_4:+32218599 None:intergenic
GGGAACACTTACCTGAACAT+TGG 0.543127 6_4:+32222984 None:intergenic
ATAGATGATGTTCTGCAACC+AGG 0.548458 6_4:-32221440 Msa0985570:CDS
GCAGGAGGACAGGCTTTCAC+CGG 0.548518 6_4:-32218575 Msa0985570:CDS
TTTGCTGGTGAACCATCTGT+TGG 0.549730 6_4:+32220271 None:intergenic
TCCTGCCTGTTCCATCAAGA+AGG 0.554789 6_4:+32218592 None:intergenic
GGGAAGAACATGTTAGCAGC+TGG 0.562041 6_4:-32221419 Msa0985570:CDS
GGAAACACCACAATCAATGT+TGG 0.562157 6_4:+32221842 None:intergenic
TTGCAGTTTGTGATAACCAC+TGG 0.562279 6_4:-32221257 Msa0985570:intron
AGATTTATTCGGTGAACGAA+GGG 0.563706 6_4:-32220435 Msa0985570:CDS
CAAAGCTCTTTATGCTGCAG+AGG 0.565129 6_4:-32217798 Msa0985570:CDS
CTTCTCCTCACATAGTACAT+TGG 0.571202 6_4:-32224863 Msa0985570:five_prime_UTR
CTTGGTTTCTGAAGAAGATG+AGG 0.575814 6_4:-32222251 Msa0985570:CDS
AAGATTTATTCGGTGAACGA+AGG 0.579302 6_4:-32220436 Msa0985570:CDS
TGCAAGGCTTTGATAAGCAG+TGG 0.582350 6_4:-32222369 Msa0985570:CDS
ACCATTAACACCACTTCCAG+TGG 0.586134 6_4:+32221241 None:intergenic
GGATAAACTCGCCAAGAGAA+GGG 0.588099 6_4:+32221207 None:intergenic
AATGTACTATGTGAGGAGAA+GGG 0.591233 6_4:+32224865 None:intergenic
TCCTTCTTGATGGAACAGGC+AGG 0.593282 6_4:-32218593 Msa0985570:CDS
CATGTACGGAAGCTCTTGCA+CGG 0.593772 6_4:-32221390 Msa0985570:intron
TAATTAAAGAACTATAACAA+TGG 0.596667 6_4:+32217622 None:intergenic
GCTTGATGTTCTTTCCAATG+AGG 0.597378 6_4:-32222397 Msa0985570:CDS
TTTGTGATAACCACTGGAAG+TGG 0.598951 6_4:-32221251 Msa0985570:CDS
TGTATAGGATAAAGTGTGAG+AGG 0.599786 6_4:+32224838 None:intergenic
TGTTTGTTCTGCTGTTAACA+AGG 0.601443 6_4:-32224331 Msa0985570:intron
ATGTGAATAAGTGTGATGTC+CGG 0.602757 6_4:-32224721 Msa0985570:five_prime_UTR
AACACCACAATCAATGTTGG+AGG 0.603640 6_4:+32221845 None:intergenic
GGAGTATTACCTTAATGTCA+GGG 0.609866 6_4:+32221177 None:intergenic
AGAGTCCAAATGGAAAACTT+CGG 0.610193 6_4:-32218740 Msa0985570:intron
GGCTCCTCCAACATTGATTG+TGG 0.614292 6_4:-32221849 Msa0985570:intron
AGGGGTCGGTGTTTCAACTC+CGG 0.626031 6_4:+32224702 None:intergenic
ACATGAATTGTTATATGTAG+GGG 0.626751 6_4:+32224684 None:intergenic
TGTACTATGTGAGGAGAAGG+GGG 0.630317 6_4:+32224867 None:intergenic
GGGAACGCCAAGAACTGGGA+TGG 0.633840 6_4:-32220415 Msa0985570:CDS
TACGATGTGCATCTGCGCTG+TGG 0.637166 6_4:+32224463 None:intergenic
GAATTGTTATATGTAGGGGT+CGG 0.641453 6_4:+32224688 None:intergenic
GTATAGGATAAAGTGTGAGA+GGG 0.642392 6_4:+32224839 None:intergenic
ATTCATACGTACGCAGCAGT+AGG 0.650826 6_4:+32220391 None:intergenic
CATCGTACATTGCTATATGG+AGG 0.654004 6_4:-32218789 Msa0985570:CDS
AGGGACCAATGTACTATGTG+AGG 0.658768 6_4:+32224858 None:intergenic
TGGTAGCTATGATGATATCG+AGG 0.676941 6_4:-32217825 Msa0985570:CDS
AACAATATAAGCGATGACGC+AGG 0.683246 6_4:-32224594 Msa0985570:five_prime_UTR
TTCTTGATGGAACAGGCAGG+AGG 0.688021 6_4:-32218590 Msa0985570:CDS
TCTAAGCATCCTGAATCACG+TGG 0.704682 6_4:-32224399 Msa0985570:CDS
TCAATATAATAGCTCCCTAG+GGG 0.718256 6_4:+32224657 None:intergenic
TTTGTGGATCCTAAGCAGCG+TGG 0.736390 6_4:-32222220 Msa0985570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATAACTTAATTTTTTGT+TGG - chr6_4:32219565-32219584 Msa0985570:intron 10.0%
!!! ATTTATTTTTCTTTATTGTT+TGG - chr6_4:32220020-32220039 Msa0985570:intron 10.0%
!!! TCTAATTATTTTAATTTTGA+TGG - chr6_4:32223795-32223814 Msa0985570:intron 10.0%
!!! TTAAAAAGTGATTTTTATTA+TGG + chr6_4:32223993-32224012 None:intergenic 10.0%
!!! TTGAAAAGAATTTATTTTTA+CGG - chr6_4:32224208-32224227 Msa0985570:intron 10.0%
!! ACATATATATCTAAAGAATT+TGG - chr6_4:32217896-32217915 Msa0985570:intron 15.0%
!! TGATGATATATTAAGTTATA+AGG - chr6_4:32219403-32219422 Msa0985570:intron 15.0%
!!! AAAATATAACTTTTTCATGA+TGG - chr6_4:32219741-32219760 Msa0985570:intron 15.0%
!!! AAATCACTTTTGATTAATTA+TGG - chr6_4:32219789-32219808 Msa0985570:intron 15.0%
!! AATAAGTTTGCATTATAAAT+AGG + chr6_4:32221915-32221934 None:intergenic 15.0%
!!! TTTTTCAGACAAAATTAAAA+AGG - chr6_4:32222585-32222604 Msa0985570:intron 15.0%
!!! TTTTCAGACAAAATTAAAAA+GGG - chr6_4:32222586-32222605 Msa0985570:intron 15.0%
!! TTCATATTAAATATTTCACA+CGG + chr6_4:32222868-32222887 None:intergenic 15.0%
!! CTAAAGTCTATAATTATTAA+TGG - chr6_4:32222926-32222945 Msa0985570:intron 15.0%
!!! AAGCTAATATAATTTGTATT+TGG - chr6_4:32223772-32223791 Msa0985570:intron 15.0%
!!! TTTTTCTTCGAAAAATATAT+AGG - chr6_4:32223949-32223968 Msa0985570:intron 15.0%
!!! AACAATTTCTCATTTTAAAT+AGG - chr6_4:32224026-32224045 Msa0985570:intron 15.0%
!!! ATTTTACTACTTTATCTATA+TGG - chr6_4:32224505-32224524 Msa0985570:five_prime_UTR 15.0%
!!! AAACAAGTTTTAATTCTTAT+AGG + chr6_4:32224772-32224791 None:intergenic 15.0%
!! AAATATACATATACATGATA+AGG + chr6_4:32224796-32224815 None:intergenic 15.0%
!! TAATTAAAGAACTATAACAA+TGG + chr6_4:32224845-32224864 None:intergenic 15.0%
!! TGTTATAGTTCTTTAATTAA+TGG - chr6_4:32224846-32224865 Msa0985570:five_prime_UTR 15.0%
!! CTTTAGTAAAACAATTGTAT+AGG + chr6_4:32217644-32217663 None:intergenic 20.0%
!!! TAAAGTGTATGTTTAGAATT+TGG - chr6_4:32217689-32217708 Msa0985570:three_prime_UTR 20.0%
!!! TTTTGAAGATTCATCAAAAA+TGG - chr6_4:32217977-32217996 Msa0985570:intron 20.0%
!!! TATTTGTTTTCATTTTCCAT+AGG - chr6_4:32218178-32218197 Msa0985570:intron 20.0%
!!! TGTGATTTTCTCAAATTATT+AGG - chr6_4:32218390-32218409 Msa0985570:intron 20.0%
!! TTCAATGTAACTATATATGT+TGG + chr6_4:32218628-32218647 None:intergenic 20.0%
!!! TTAAGTTGTTTATCCAAATA+GGG + chr6_4:32218989-32219008 None:intergenic 20.0%
!!! ATTAAGTTGTTTATCCAAAT+AGG + chr6_4:32218990-32219009 None:intergenic 20.0%
!!! ACATACTTATAAGTTTGTTT+GGG + chr6_4:32219504-32219523 None:intergenic 20.0%
!! ATATTGAGATGAAATCAATT+TGG - chr6_4:32219947-32219966 Msa0985570:intron 20.0%
!!! TCTATTTTTTATTACGATTC+AGG - chr6_4:32220565-32220584 Msa0985570:intron 20.0%
!! TTAATTACTCCATTACAATA+CGG - chr6_4:32221173-32221192 Msa0985570:intron 20.0%
!!! TTTTAAATATTGGTTTACCA+TGG + chr6_4:32221504-32221523 None:intergenic 20.0%
!! ACCAATATTTAAAAATCACT+TGG - chr6_4:32221510-32221529 Msa0985570:intron 20.0%
!!! TCCAAGTGATTTTTAAATAT+TGG + chr6_4:32221514-32221533 None:intergenic 20.0%
!!! TTGCCTTATTTTTTATCTTT+TGG - chr6_4:32221838-32221857 Msa0985570:intron 20.0%
!! CAACCAAAAGATAAAAAATA+AGG + chr6_4:32221844-32221863 None:intergenic 20.0%
!! GATGATTGAAAATATAACAA+TGG - chr6_4:32222124-32222143 Msa0985570:intron 20.0%
!!! TTTTTCTTATTACAGTTATG+TGG - chr6_4:32222156-32222175 Msa0985570:intron 20.0%
!!! TTATTTTCATAAACTCTTCT+AGG + chr6_4:32222433-32222452 None:intergenic 20.0%
!! ACAATTGTCTTAAAAACAAA+TGG + chr6_4:32222664-32222683 None:intergenic 20.0%
!!! TGATAGAAAATTGATGATTT+TGG + chr6_4:32222990-32223009 None:intergenic 20.0%
!!! TTTATTACACAACTTGTTAT+TGG - chr6_4:32223207-32223226 Msa0985570:intron 20.0%
!!! AAAGATTTATTTTGTACACT+TGG - chr6_4:32223284-32223303 Msa0985570:intron 20.0%
!!! TTATATTAGCTTAAACATTG+AGG + chr6_4:32223764-32223783 None:intergenic 20.0%
!!! AATATCGTTTTATTGGATTA+GGG + chr6_4:32224186-32224205 None:intergenic 20.0%
!!! AAATATCGTTTTATTGGATT+AGG + chr6_4:32224187-32224206 None:intergenic 20.0%
!!! TTCAACAAATATCGTTTTAT+TGG + chr6_4:32224193-32224212 None:intergenic 20.0%
!! AAGAGATTTCAATAAAAGTA+TGG - chr6_4:32224278-32224297 Msa0985570:intron 20.0%
!! ACTTATAAGGAATTCAATAA+AGG + chr6_4:32224454-32224473 None:intergenic 20.0%
!! TCAATAGTAACATGTATAAT+TGG + chr6_4:32224894-32224913 None:intergenic 20.0%
! ACATGAATTGTTATATGTAG+GGG + chr6_4:32217783-32217802 None:intergenic 25.0%
! GACATGAATTGTTATATGTA+GGG + chr6_4:32217784-32217803 None:intergenic 25.0%
! AACAATGTTATTAAGCAAGA+TGG + chr6_4:32218099-32218118 None:intergenic 25.0%
! TTGCTTAATAACATTGTTCT+TGG - chr6_4:32218101-32218120 Msa0985570:intron 25.0%
! AAACATAGAATTATGATCAG+TGG + chr6_4:32218255-32218274 None:intergenic 25.0%
! TTCAGTGTAATTATATGTGA+CGG + chr6_4:32218367-32218386 None:intergenic 25.0%
! TCTCAAATTATTAGGAGTTT+CGG - chr6_4:32218398-32218417 Msa0985570:intron 25.0%
!!! CATATCAACCTTTTTTAATC+AGG + chr6_4:32218540-32218559 None:intergenic 25.0%
!!! AAAAAGGTTGATATGAAGTA+AGG - chr6_4:32218545-32218564 Msa0985570:intron 25.0%
! CTGTGATTGATATACAATTA+TGG - chr6_4:32218723-32218742 Msa0985570:intron 25.0%
!!! TAAGGTTTTGTTATATGTGT+AGG - chr6_4:32219421-32219440 Msa0985570:intron 25.0%
!! CATACTTATAAGTTTGTTTG+GGG + chr6_4:32219503-32219522 None:intergenic 25.0%
!! GACATACTTATAAGTTTGTT+TGG + chr6_4:32219505-32219524 None:intergenic 25.0%
!!! ACTTAATTTTTTGTTGGATG+TGG - chr6_4:32219571-32219590 Msa0985570:intron 25.0%
!!! CTTAATTTTTTGTTGGATGT+GGG - chr6_4:32219572-32219591 Msa0985570:intron 25.0%
!!! ATCAAATTTGATTTAGCTCT+TGG - chr6_4:32219697-32219716 Msa0985570:intron 25.0%
! CCAAATTGTTAATGTGTATT+TGG + chr6_4:32219989-32220008 None:intergenic 25.0%
! CCAAATACACATTAACAATT+TGG - chr6_4:32219986-32220005 Msa0985570:intron 25.0%
!! TTCTTTATTGTTTGGAATGA+AGG - chr6_4:32220028-32220047 Msa0985570:intron 25.0%
!! TCTTTATTGTTTGGAATGAA+GGG - chr6_4:32220029-32220048 Msa0985570:intron 25.0%
!! TGTTTAATAGCTTTTGATGA+TGG - chr6_4:32220168-32220187 Msa0985570:intron 25.0%
! AACCTTCTTAGAGAATATAT+GGG + chr6_4:32220312-32220331 None:intergenic 25.0%
! AAACCTTCTTAGAGAATATA+TGG + chr6_4:32220313-32220332 None:intergenic 25.0%
!!! GAAGTTTAACTGTGATTTTT+TGG - chr6_4:32220521-32220540 Msa0985570:intron 25.0%
!! TTGAACATTTTGCAGATTTT+TGG - chr6_4:32220967-32220986 Msa0985570:intron 25.0%
!! TGAACATTTTGCAGATTTTT+GGG - chr6_4:32220968-32220987 Msa0985570:intron 25.0%
! TAATTACTCCATTACAATAC+GGG - chr6_4:32221174-32221193 Msa0985570:intron 25.0%
! AATAAATCTTGCCTTTCTTT+GGG + chr6_4:32222018-32222037 None:intergenic 25.0%
! AAAGAAAGGCAAGATTTATT+CGG - chr6_4:32222018-32222037 Msa0985570:intron 25.0%
! TTGTCTTAAAAACAAATGGT+GGG + chr6_4:32222660-32222679 None:intergenic 25.0%
! ATTGTCTTAAAAACAAATGG+TGG + chr6_4:32222661-32222680 None:intergenic 25.0%
!! TCATATGAGTTTTCATGTTT+TGG - chr6_4:32223007-32223026 Msa0985570:CDS 25.0%
! AGATTAAAGAAGCTGAAAAA+TGG + chr6_4:32223040-32223059 None:intergenic 25.0%
! TATATACACTCTTCACTAAA+GGG + chr6_4:32223106-32223125 None:intergenic 25.0%
! ATATATACACTCTTCACTAA+AGG + chr6_4:32223107-32223126 None:intergenic 25.0%
! CTTATGTTTGAAAACTAATG+AGG + chr6_4:32223133-32223152 None:intergenic 25.0%
!!! TTATTACTACAACTTGTTGT+TGG - chr6_4:32223309-32223328 Msa0985570:intron 25.0%
!!! ATCTGACTAAAGATTTTTAG+TGG - chr6_4:32223378-32223397 Msa0985570:intron 25.0%
!!! TCTGACTAAAGATTTTTAGT+GGG - chr6_4:32223379-32223398 Msa0985570:intron 25.0%
! GGATAAAAAAAAATGTGGTT+GGG + chr6_4:32223414-32223433 None:intergenic 25.0%
! TGGATAAAAAAAAATGTGGT+TGG + chr6_4:32223415-32223434 None:intergenic 25.0%
! CTTGTGGATAAAAAAAAATG+TGG + chr6_4:32223419-32223438 None:intergenic 25.0%
!! TTTTTGTACATTAAACAGCA+TGG - chr6_4:32223641-32223660 Msa0985570:intron 25.0%
!! TAGATTTTTCTTTTTTCTGC+AGG - chr6_4:32224052-32224071 Msa0985570:intron 25.0%
!!! TTTTAGAAGTTTGCATCATA+TGG + chr6_4:32224108-32224127 None:intergenic 25.0%
! ATAATAAGAGTAGAGATACA+TGG - chr6_4:32224255-32224274 Msa0985570:intron 25.0%
! AGAAGATTTATCAGTTGATT+GGG + chr6_4:32224559-32224578 None:intergenic 25.0%
! TAGAAGATTTATCAGTTGAT+TGG + chr6_4:32224560-32224579 None:intergenic 25.0%
! GATAAATCTTCTATCTTATC+AGG - chr6_4:32224567-32224586 Msa0985570:five_prime_UTR 25.0%
GGACATGAATTGTTATATGT+AGG + chr6_4:32217785-32217804 None:intergenic 30.0%
! CGATTGATTCATTCATTGAT+TGG - chr6_4:32217947-32217966 Msa0985570:intron 30.0%
ATTCAACACAAAACGTGTTA+TGG + chr6_4:32218039-32218058 None:intergenic 30.0%
ACAAATACGAAAAAGAGTGA+AGG + chr6_4:32218165-32218184 None:intergenic 30.0%
TATCAGTGCTTCATTAAACA+TGG - chr6_4:32218459-32218478 Msa0985570:intron 30.0%
ATCAGTGCTTCATTAAACAT+GGG - chr6_4:32218460-32218479 Msa0985570:intron 30.0%
TGATACTGCCTGATTAAAAA+AGG - chr6_4:32218529-32218548 Msa0985570:intron 30.0%
! TTACATTGCTGTTGTAATTG+TGG - chr6_4:32218853-32218872 Msa0985570:intron 30.0%
AGTTGTTTATCCAACTGATT+GGG + chr6_4:32219133-32219152 None:intergenic 30.0%
AAGTTGTTTATCCAACTGAT+TGG + chr6_4:32219134-32219153 None:intergenic 30.0%
TGAGATTACTCTTGCAATAA+TGG - chr6_4:32219319-32219338 Msa0985570:intron 30.0%
!!! TATGTTTTAACAGTGCATCT+TGG - chr6_4:32220195-32220214 Msa0985570:intron 30.0%
! TTCCCATATATTCTCTAAGA+AGG - chr6_4:32220307-32220326 Msa0985570:intron 30.0%
!!! GTTGTTTTTGATCCATTAGA+CGG - chr6_4:32220594-32220613 Msa0985570:intron 30.0%
ACAAATTTGAGTAGGGATTA+GGG + chr6_4:32220664-32220683 None:intergenic 30.0%
TTGCAAGACAAATTTGAGTA+GGG + chr6_4:32220671-32220690 None:intergenic 30.0%
ATTGCAAGACAAATTTGAGT+AGG + chr6_4:32220672-32220691 None:intergenic 30.0%
! GTTCTTGTTATATGTGTAGA+AGG - chr6_4:32220906-32220925 Msa0985570:intron 30.0%
AATAGTGATCCATAAGTTAG+CGG + chr6_4:32221311-32221330 None:intergenic 30.0%
GAGCAAATAGAAACTTAAGA+AGG + chr6_4:32221395-32221414 None:intergenic 30.0%
TTCATGAATCAAGCATTACT+AGG - chr6_4:32221420-32221439 Msa0985570:CDS 30.0%
CTAAACTTGACTACCTTAAT+AGG - chr6_4:32221474-32221493 Msa0985570:intron 30.0%
TTACCATGGATAACCTATTA+AGG + chr6_4:32221490-32221509 None:intergenic 30.0%
!!! GTTTTTTATTGAACTGATGC+CGG - chr6_4:32221674-32221693 Msa0985570:intron 30.0%
!!! TTTGAAGGATTTTCAAGTAC+CGG - chr6_4:32221775-32221794 Msa0985570:intron 30.0%
AAATAAGGCAAATTCTACAG+TGG + chr6_4:32221829-32221848 None:intergenic 30.0%
TAAATATCAATTGAGAGCAG+AGG + chr6_4:32221892-32221911 None:intergenic 30.0%
ACACCATTTGTGTTAATTGT+TGG - chr6_4:32221971-32221990 Msa0985570:intron 30.0%
ACACCAACAATTAACACAAA+TGG + chr6_4:32221977-32221996 None:intergenic 30.0%
GAATAAATCTTGCCTTTCTT+TGG + chr6_4:32222019-32222038 None:intergenic 30.0%
ATATATCTTAGAGACTTTGC+TGG + chr6_4:32222211-32222230 None:intergenic 30.0%
!! GCAAAGTCTCTAAGATATAT+TGG - chr6_4:32222211-32222230 Msa0985570:intron 30.0%
!! AGTCTCTAAGATATATTGGA+AGG - chr6_4:32222215-32222234 Msa0985570:intron 30.0%
AAACTCTTCTAGGTAGTTTA+TGG + chr6_4:32222423-32222442 None:intergenic 30.0%
CAAGTTCTATTCACACTTTA+TGG - chr6_4:32222743-32222762 Msa0985570:intron 30.0%
TGGTGAAACTAGGAATTATA+TGG + chr6_4:32222970-32222989 None:intergenic 30.0%
!! TTGATGATTTTGGTGAAACT+AGG + chr6_4:32222980-32222999 None:intergenic 30.0%
AAACCAAGTGTACAAAATAG+AGG + chr6_4:32223189-32223208 None:intergenic 30.0%
!!! CTGACTAAAGATTTTTAGTG+GGG - chr6_4:32223380-32223399 Msa0985570:intron 30.0%
AAAAAAAATGTGGTTGGGAT+AGG + chr6_4:32223409-32223428 None:intergenic 30.0%
GTATGGAAATTAACATAACG+TGG - chr6_4:32224295-32224314 Msa0985570:intron 30.0%
! ACTCTGATGTAAAGTTTGTT+CGG + chr6_4:32224363-32224382 None:intergenic 30.0%
!! GGATGAGTTCTAAACTTATA+AGG + chr6_4:32224467-32224486 None:intergenic 30.0%
AGTAGTAAAATCACACAACA+GGG + chr6_4:32224496-32224515 None:intergenic 30.0%
AAGTAGTAAAATCACACAAC+AGG + chr6_4:32224497-32224516 None:intergenic 30.0%
! GATCTTTCATGCAATTTTGT+TGG + chr6_4:32224607-32224626 None:intergenic 30.0%
TCATAGCTACCAAGAAATAT+GGG + chr6_4:32224631-32224650 None:intergenic 30.0%
ATCATAGCTACCAAGAAATA+TGG + chr6_4:32224632-32224651 None:intergenic 30.0%
TGCGAGTAGTAAAAAACAAA+AGG + chr6_4:32224718-32224737 None:intergenic 30.0%
CAAGCATTTATCCAATTGTT+AGG - chr6_4:32224736-32224755 Msa0985570:five_prime_UTR 30.0%
AATGTACTATGTGAGGAGAA+GGG + chr6_4:32217602-32217621 None:intergenic 35.0%
GTATAGGATAAAGTGTGAGA+GGG + chr6_4:32217628-32217647 None:intergenic 35.0%
TGTATAGGATAAAGTGTGAG+AGG + chr6_4:32217629-32217648 None:intergenic 35.0%
ATGTGAATAAGTGTGATGTC+CGG - chr6_4:32217743-32217762 Msa0985570:three_prime_UTR 35.0%
GAATTGTTATATGTAGGGGT+CGG + chr6_4:32217779-32217798 None:intergenic 35.0%
TCAATATAATAGCTCCCTAG+GGG + chr6_4:32217810-32217829 None:intergenic 35.0%
GTCAATATAATAGCTCCCTA+GGG + chr6_4:32217811-32217830 None:intergenic 35.0%
TGTCAATATAATAGCTCCCT+AGG + chr6_4:32217812-32217831 None:intergenic 35.0%
TTGGTACGTACATAGTTGAT+TGG - chr6_4:32217915-32217934 Msa0985570:intron 35.0%
!! CGTACATAGTTGATTGGTTT+CGG - chr6_4:32217921-32217940 Msa0985570:intron 35.0%
TGTTTGTTCTGCTGTTAACA+AGG - chr6_4:32218133-32218152 Msa0985570:intron 35.0%
!!! ATTTTGAGTTACCATGCTCA+GGG - chr6_4:32218226-32218245 Msa0985570:intron 35.0%
CATAGAATTATGATCAGTGG+TGG + chr6_4:32218252-32218271 None:intergenic 35.0%
GTAATTATATGTGACGGTGT+CGG + chr6_4:32218361-32218380 None:intergenic 35.0%
!! AGGTTGATATGAAGTAAGGA+AGG - chr6_4:32218549-32218568 Msa0985570:intron 35.0%
CCATGACTGTATATCAATCA+CGG + chr6_4:32218805-32218824 None:intergenic 35.0%
! TAAGTGTGTGTTTGGAATTG+CGG - chr6_4:32218918-32218937 Msa0985570:intron 35.0%
! TTTGGTACTGAATGCGATAT+TGG + chr6_4:32218952-32218971 None:intergenic 35.0%
GCATTCAGTACCAAACATAA+AGG - chr6_4:32218957-32218976 Msa0985570:intron 35.0%
AGTACCAAACATAAAGGCTA+AGG - chr6_4:32218963-32218982 Msa0985570:intron 35.0%
! TTTATTTGCTAGTAACACCC+TGG - chr6_4:32219010-32219029 Msa0985570:intron 35.0%
! AGAACCTGAGTTCGATTTTT+GGG + chr6_4:32219110-32219129 None:intergenic 35.0%
!! GTTTTGTTATATGTGTAGGC+TGG - chr6_4:32219425-32219444 Msa0985570:intron 35.0%
ACATTGCTATAGCTGCTATT+TGG + chr6_4:32219869-32219888 None:intergenic 35.0%
AGATGAGGATGCAATATTTG+TGG - chr6_4:32220228-32220247 Msa0985570:intron 35.0%
CCTTGATTACAACAACATCA+TGG + chr6_4:32220374-32220393 None:intergenic 35.0%
CCATGATGTTGTTGTAATCA+AGG - chr6_4:32220371-32220390 Msa0985570:intron 35.0%
! TGACAGTCTAAAACCTTCTA+CGG - chr6_4:32220497-32220516 Msa0985570:intron 35.0%
ATTGATTGTGGTGTTTCCAT+TGG - chr6_4:32220627-32220646 Msa0985570:intron 35.0%
GACAAATTTGAGTAGGGATT+AGG + chr6_4:32220665-32220684 None:intergenic 35.0%
CCATACTAACTGTATATTGC+CGG - chr6_4:32220938-32220957 Msa0985570:intron 35.0%
GCAAAATGTTCAATTGACAC+CGG + chr6_4:32220960-32220979 None:intergenic 35.0%
! CATCATCTATGATTGGTTCA+TGG + chr6_4:32221014-32221033 None:intergenic 35.0%
TGCAGAACATCATCTATGAT+TGG + chr6_4:32221021-32221040 None:intergenic 35.0%
! GGAGTATTACCTTAATGTCA+GGG + chr6_4:32221290-32221309 None:intergenic 35.0%
CTACCTTAATAGGTTATCCA+TGG - chr6_4:32221484-32221503 Msa0985570:intron 35.0%
! GTCTGTCGTTGAAATTTTGA+AGG - chr6_4:32221760-32221779 Msa0985570:intron 35.0%
!! GTCAAGCTCTAAACAAATAC+TGG + chr6_4:32221870-32221889 None:intergenic 35.0%
TTGTGTTAATTGTTGGTGTG+TGG - chr6_4:32221978-32221997 Msa0985570:intron 35.0%
! AAGATTTATTCGGTGAACGA+AGG - chr6_4:32222028-32222047 Msa0985570:intron 35.0%
! AGATTTATTCGGTGAACGAA+GGG - chr6_4:32222029-32222048 Msa0985570:intron 35.0%
AAATGCAAGTTTCCAACAGA+TGG - chr6_4:32222181-32222200 Msa0985570:intron 35.0%
TACAGATTCTCAACTCTAGA+AGG - chr6_4:32222241-32222260 Msa0985570:CDS 35.0%
GCCAGTAGTTAAACTCAAAT+AGG - chr6_4:32222525-32222544 Msa0985570:intron 35.0%
! GCCTATTTGAGTTTAACTAC+TGG + chr6_4:32222529-32222548 None:intergenic 35.0%
CTGAAAAACCAACTATGAAG+TGG + chr6_4:32222573-32222592 None:intergenic 35.0%
!!! TGAGTTTTCATGTTTTGGTG+TGG - chr6_4:32223012-32223031 Msa0985570:CDS 35.0%
TGTGATCTGATCATAACTCA+TGG - chr6_4:32223063-32223082 Msa0985570:intron 35.0%
ACAAAATAGAGGCTTAAGTC+CGG + chr6_4:32223178-32223197 None:intergenic 35.0%
! AAGCCTCTATTTTGTACACT+TGG - chr6_4:32223183-32223202 Msa0985570:intron 35.0%
! AGATTAGTCATCGGTAAAGT+CGG + chr6_4:32223246-32223265 None:intergenic 35.0%
! TCACAACAGAGATTAGTCAT+CGG + chr6_4:32223255-32223274 None:intergenic 35.0%
! AGATTAGTCATCGGTAAAGT+CGG + chr6_4:32223246-32223265 None:intergenic 35.0%
! TCACAACAGAGATTAGTCAT+CGG + chr6_4:32223255-32223274 None:intergenic 35.0%
ATACATCACATAAGTCTGAG+TGG + chr6_4:32223483-32223502 None:intergenic 35.0%
GTTCATCGTACATTGCTATA+TGG - chr6_4:32223672-32223691 Msa0985570:intron 35.0%
AGAGTCCAAATGGAAAACTT+CGG - chr6_4:32223724-32223743 Msa0985570:intron 35.0%
! ACATACCGAAGTTTTCCATT+TGG + chr6_4:32223732-32223751 None:intergenic 35.0%
AGTTGCTCATAGCTTAGTTA+GGG + chr6_4:32224326-32224345 None:intergenic 35.0%
TAGTTGCTCATAGCTTAGTT+AGG + chr6_4:32224327-32224346 None:intergenic 35.0%
GAAAGATCTCCCATATTTCT+TGG - chr6_4:32224619-32224638 Msa0985570:five_prime_UTR 35.0%
ATGTACTATGTGAGGAGAAG+GGG + chr6_4:32217601-32217620 None:intergenic 40.0%
CAATGTACTATGTGAGGAGA+AGG + chr6_4:32217603-32217622 None:intergenic 40.0%
CTTCTCCTCACATAGTACAT+TGG - chr6_4:32217601-32217620 Msa0985570:three_prime_UTR 40.0%
AACAATATAAGCGATGACGC+AGG - chr6_4:32217870-32217889 Msa0985570:CDS 40.0%
GTAAAATCTCCACGTGATTC+AGG + chr6_4:32218077-32218096 None:intergenic 40.0%
!!! GATTTTGAGTTACCATGCTC+AGG - chr6_4:32218225-32218244 Msa0985570:intron 40.0%
!! TACGAAGCACTGATACTTCT+CGG - chr6_4:32218300-32218319 Msa0985570:intron 40.0%
GTCAGTATCCATATCATGTC+TGG - chr6_4:32218424-32218443 Msa0985570:intron 40.0%
!! ATGAAGCACTGATACGAACA+AGG + chr6_4:32218453-32218472 None:intergenic 40.0%
! GTTAGTGTTTCTGTTGTGTC+TGG - chr6_4:32218685-32218704 Msa0985570:intron 40.0%
GGTTGAAGAGACATCAAAAG+TGG - chr6_4:32218744-32218763 Msa0985570:CDS 40.0%
CCGTGATTGATATACAGTCA+TGG - chr6_4:32218802-32218821 Msa0985570:CDS 40.0%
GGTTGAAGAGACATCAAAAG+TGG - chr6_4:32218744-32218763 Msa0985570:CDS 40.0%
ACAACGTCAAAACCGTAGAT+TGG + chr6_4:32218887-32218906 None:intergenic 40.0%
GGAGACTTTAAGTGTGTGTT+TGG - chr6_4:32218910-32218929 Msa0985570:intron 40.0%
ATAAAGGCTAAGGCCCTATT+TGG - chr6_4:32218973-32218992 Msa0985570:intron 40.0%
! GAGAACCTGAGTTCGATTTT+TGG + chr6_4:32219111-32219130 None:intergenic 40.0%
GCTTATCTTGATAAGCGCTT+AGG - chr6_4:32219163-32219182 Msa0985570:intron 40.0%
CATGATGGCTAGTGAAATGA+AGG - chr6_4:32219756-32219775 Msa0985570:intron 40.0%
TGGCTAGTGAAATGAAGGTT+TGG - chr6_4:32219761-32219780 Msa0985570:intron 40.0%
GGTCTGTTCAAATTCTGCTA+CGG + chr6_4:32219900-32219919 None:intergenic 40.0%
GCTTGATGTTCTTTCCAATG+AGG - chr6_4:32220067-32220086 Msa0985570:intron 40.0%
! CTTGGTTTCTGAAGAAGATG+AGG - chr6_4:32220213-32220232 Msa0985570:intron 40.0%
! ATTTTGTCGTGGTTGCATTG+TGG - chr6_4:32220348-32220367 Msa0985570:intron 40.0%
CAGTTAAACTTCTCCGTAGA+AGG + chr6_4:32220513-32220532 None:intergenic 40.0%
AACACCACAATCAATGTTGG+AGG + chr6_4:32220622-32220641 None:intergenic 40.0%
GGAAACACCACAATCAATGT+TGG + chr6_4:32220625-32220644 None:intergenic 40.0%
TAGGGATCATACAGTTCCAA+TGG + chr6_4:32220646-32220665 None:intergenic 40.0%
TCACAGACACTTCATATCGA+AGG - chr6_4:32220706-32220725 Msa0985570:intron 40.0%
! ATATCGAAGGCATGTATGTC+TGG - chr6_4:32220719-32220738 Msa0985570:intron 40.0%
TCATGTCTAGTGTTTGTGTC+AGG - chr6_4:32220847-32220866 Msa0985570:intron 40.0%
CCGGCAATATACAGTTAGTA+TGG + chr6_4:32220941-32220960 None:intergenic 40.0%
ATAGATGATGTTCTGCAACC+AGG - chr6_4:32221024-32221043 Msa0985570:intron 40.0%
TAGATGATGTTCTGCAACCA+GGG - chr6_4:32221025-32221044 Msa0985570:intron 40.0%
TTGCAGTTTGTGATAACCAC+TGG - chr6_4:32221207-32221226 Msa0985570:CDS 40.0%
TTTGTGATAACCACTGGAAG+TGG - chr6_4:32221213-32221232 Msa0985570:CDS 40.0%
! CGGAGTATTACCTTAATGTC+AGG + chr6_4:32221291-32221310 None:intergenic 40.0%
GGTAATACTCCGCTAACTTA+TGG - chr6_4:32221299-32221318 Msa0985570:intron 40.0%
! ATACGAACTTGCTCATTTCG+AGG - chr6_4:32221445-32221464 Msa0985570:CDS 40.0%
! AACTTGCTCATTTCGAGGTA+GGG - chr6_4:32221450-32221469 Msa0985570:CDS 40.0%
ATCAAGCCACCATAAAGACA+AGG + chr6_4:32221584-32221603 None:intergenic 40.0%
TGTCTTTATGGTGGCTTGAT+TGG - chr6_4:32221584-32221603 Msa0985570:intron 40.0%
TGCTTATACGGTCACTTAAC+CGG + chr6_4:32221696-32221715 None:intergenic 40.0%
TTGTGCCATCGTTGCTTATA+CGG + chr6_4:32221708-32221727 None:intergenic 40.0%
TATAAGCAACGATGGCACAA+AGG - chr6_4:32221708-32221727 Msa0985570:intron 40.0%
!!! GATTTTCAAGTACCGGTCTA+TGG - chr6_4:32221782-32221801 Msa0985570:intron 40.0%
!! CACAAATGGTGTTGATACTC+AGG + chr6_4:32221963-32221982 None:intergenic 40.0%
TCTTTGCAGATCCCAAAGAA+AGG - chr6_4:32222004-32222023 Msa0985570:intron 40.0%
!!! TTGCTTACTGCCCTTGTTTT+AGG - chr6_4:32222272-32222291 Msa0985570:intron 40.0%
AAGCACTCGTGAGATTGTTT+GGG + chr6_4:32222503-32222522 None:intergenic 40.0%
TAAGCACTCGTGAGATTGTT+TGG + chr6_4:32222504-32222523 None:intergenic 40.0%
ATTGCCCACAAAAGTTGAAC+CGG - chr6_4:32223156-32223175 Msa0985570:intron 40.0%
! AAGTCCGGTTCAACTTTTGT+GGG + chr6_4:32223163-32223182 None:intergenic 40.0%
! TAAGTCCGGTTCAACTTTTG+TGG + chr6_4:32223164-32223183 None:intergenic 40.0%
AGATCTCTTAGGTAAGGTCT+CGG + chr6_4:32223450-32223469 None:intergenic 40.0%
GAACTCAGATCTCTTAGGTA+AGG + chr6_4:32223456-32223475 None:intergenic 40.0%
GAACTGAACTCAGATCTCTT+AGG + chr6_4:32223461-32223480 None:intergenic 40.0%
CATCGTACATTGCTATATGG+AGG - chr6_4:32223675-32223694 Msa0985570:intron 40.0%
TTTGTCAGCAGGGTACAAAA+AGG + chr6_4:32223703-32223722 None:intergenic 40.0%
! TTGGACTCTTTTTGTCAGCA+GGG + chr6_4:32223713-32223732 None:intergenic 40.0%
! TTTGGACTCTTTTTGTCAGC+AGG + chr6_4:32223714-32223733 None:intergenic 40.0%
GCTGACAAAAAGAGTCCAAA+TGG - chr6_4:32223714-32223733 Msa0985570:intron 40.0%
GTTCCATCAAGAAGGACATT+GGG + chr6_4:32223867-32223886 None:intergenic 40.0%
TGTTCCATCAAGAAGGACAT+TGG + chr6_4:32223868-32223887 None:intergenic 40.0%
AATGTCCTTCTTGATGGAAC+AGG - chr6_4:32223867-32223886 Msa0985570:intron 40.0%
TGGTAGCTATGATGATATCG+AGG - chr6_4:32224639-32224658 Msa0985570:five_prime_UTR 40.0%
! GCACTTGTTAGCCTAACAAT+TGG + chr6_4:32224750-32224769 None:intergenic 40.0%
TGTACTATGTGAGGAGAAGG+GGG + chr6_4:32217600-32217619 None:intergenic 45.0%
AGGGACCAATGTACTATGTG+AGG + chr6_4:32217609-32217628 None:intergenic 45.0%
TCTAAGCATCCTGAATCACG+TGG - chr6_4:32218065-32218084 Msa0985570:intron 45.0%
CGTCAAGTGCAGAAAACCTA+TGG + chr6_4:32218197-32218216 None:intergenic 45.0%
! GCACTGATACTTCTCGGATT+AGG - chr6_4:32218306-32218325 Msa0985570:intron 45.0%
!! TTCTCGGATTAGGAGTGTCT+TGG - chr6_4:32218316-32218335 Msa0985570:intron 45.0%
!! GATTAGGAGTGTCTTGGTGT+TGG - chr6_4:32218322-32218341 Msa0985570:intron 45.0%
CAAGGACACCAGACATGATA+TGG + chr6_4:32218435-32218454 None:intergenic 45.0%
ACTGAGACATGCCTAATACG+AGG + chr6_4:32218580-32218599 None:intergenic 45.0%
GAAACACTAACACGTCGACA+CGG + chr6_4:32218676-32218695 None:intergenic 45.0%
GTGGTTAAGCTGCCAATCTA+CGG - chr6_4:32218872-32218891 Msa0985570:intron 45.0%
!! CTACGGTTTTGACGTTGTTG+TGG - chr6_4:32218889-32218908 Msa0985570:intron 45.0%
! AGGGCCTTAGCCTTTATGTT+TGG + chr6_4:32218970-32218989 None:intergenic 45.0%
ACCCTGGTTTCTTTCACAAG+CGG - chr6_4:32219026-32219045 Msa0985570:intron 45.0%
CAACCAAACTCCAGATCAGT+GGG + chr6_4:32219053-32219072 None:intergenic 45.0%
! CACTGATCTGGAGTTTGGTT+GGG - chr6_4:32219052-32219071 Msa0985570:intron 45.0%
TCCACCCAAAAATCGAACTC+AGG - chr6_4:32219103-32219122 Msa0985570:intron 45.0%
!! ACCTGAGTTCGATTTTTGGG+TGG + chr6_4:32219107-32219126 None:intergenic 45.0%
GGGAACACTTACCTGAACAT+TGG + chr6_4:32219483-32219502 None:intergenic 45.0%
TCGCAGATCGCAACATATAG+TGG + chr6_4:32219921-32219940 None:intergenic 45.0%
! TTCCAATGAGGTGTTCTGCA+AGG - chr6_4:32220079-32220098 Msa0985570:intron 45.0%
! TGCAAGGCTTTGATAAGCAG+TGG - chr6_4:32220095-32220114 Msa0985570:intron 45.0%
AACAACTTTCCACGCTGCTT+AGG + chr6_4:32220256-32220275 None:intergenic 45.0%
! TTGCAGTAGCGATTTTGTCG+TGG - chr6_4:32220337-32220356 Msa0985570:intron 45.0%
TTTCTGTGTCATGCCGGTAT+CGG + chr6_4:32220765-32220784 None:intergenic 45.0%
CACACATTTCTGTGTCATGC+CGG + chr6_4:32220771-32220790 None:intergenic 45.0%
GCAGCTGGTTATTGCATGTA+CGG - chr6_4:32221060-32221079 Msa0985570:intron 45.0%
CAGCAGATCCCGTATTGTAA+TGG + chr6_4:32221185-32221204 None:intergenic 45.0%
CATTACAATACGGGATCTGC+TGG - chr6_4:32221183-32221202 Msa0985570:intron 45.0%
! ACCACTGGAAGTGGTGTTAA+TGG - chr6_4:32221222-32221241 Msa0985570:CDS 45.0%
ACCATTAACACCACTTCCAG+TGG + chr6_4:32221226-32221245 None:intergenic 45.0%
GGATAAACTCGCCAAGAGAA+GGG + chr6_4:32221260-32221279 None:intergenic 45.0%
AGGATAAACTCGCCAAGAGA+AGG + chr6_4:32221261-32221280 None:intergenic 45.0%
CCTTAATGTCAGGGTGAGTT+AGG + chr6_4:32221281-32221300 None:intergenic 45.0%
CCTAACTCACCCTGACATTA+AGG - chr6_4:32221278-32221297 Msa0985570:intron 45.0%
! GAACTTGCTCATTTCGAGGT+AGG - chr6_4:32221449-32221468 Msa0985570:CDS 45.0%
CAATGATCGAATACGCCCAT+TGG - chr6_4:32221541-32221560 Msa0985570:intron 45.0%
CACACTCCTTGTCTTTATGG+TGG - chr6_4:32221575-32221594 Msa0985570:intron 45.0%
AGTGACCGTATAAGCAACGA+TGG - chr6_4:32221700-32221719 Msa0985570:intron 45.0%
TGTGAGCTTCTACTTCCAGA+AGG - chr6_4:32221733-32221752 Msa0985570:intron 45.0%
!! TTTCAAGTACCGGTCTATGG+TGG - chr6_4:32221785-32221804 Msa0985570:intron 45.0%
ATAGGTGATCCACCATAGAC+CGG + chr6_4:32221797-32221816 None:intergenic 45.0%
! TGGTGGATCACCTATCGAAT+TGG - chr6_4:32221802-32221821 Msa0985570:intron 45.0%
CTACAGTGGACCAATTCGAT+AGG + chr6_4:32221815-32221834 None:intergenic 45.0%
ATTCATACGTACGCAGCAGT+AGG + chr6_4:32222076-32222095 None:intergenic 45.0%
TTTGCTGGTGAACCATCTGT+TGG + chr6_4:32222196-32222215 None:intergenic 45.0%
CCACAGAGAGCCTAAAACAA+GGG + chr6_4:32222285-32222304 None:intergenic 45.0%
TCCACAGAGAGCCTAAAACA+AGG + chr6_4:32222286-32222305 None:intergenic 45.0%
ACTCTTCACTAAAGGGTCTG+TGG + chr6_4:32223099-32223118 None:intergenic 45.0%
GATCTCTTAGGTAAGGTCTC+GGG + chr6_4:32223449-32223468 None:intergenic 45.0%
CTTCCCAATGTCCTTCTTGA+TGG - chr6_4:32223861-32223880 Msa0985570:intron 45.0%
ATGCATTACCCTTTCCTTGC+CGG + chr6_4:32223911-32223930 None:intergenic 45.0%
AATCACACAACAGGGCATGT+TGG + chr6_4:32224488-32224507 None:intergenic 45.0%
CAAAGCTCTTTATGCTGCAG+AGG - chr6_4:32224666-32224685 Msa0985570:five_prime_UTR 45.0%
TGCTGCAGAGGCTAAATAAG+AGG - chr6_4:32224678-32224697 Msa0985570:five_prime_UTR 45.0%
!!! AAATTTTTTATTTATTTTGT+TGG + chr6_4:32223590-32223609 None:intergenic 5.0%
!!! GGTGGTGGGTTCGATGTTTT+GGG + chr6_4:32217574-32217593 None:intergenic 50.0%
!!! TGGTGGTGGGTTCGATGTTT+TGG + chr6_4:32217575-32217594 None:intergenic 50.0%
TATGTGAGGAGAAGGGGGAA+TGG + chr6_4:32217595-32217614 None:intergenic 50.0%
ACAATTCATGTCCAGCCCCT+AGG - chr6_4:32217792-32217811 Msa0985570:CDS 50.0%
CAATTCATGTCCAGCCCCTA+GGG - chr6_4:32217793-32217812 Msa0985570:CDS 50.0%
TATAATAGCTCCCTAGGGGC+TGG + chr6_4:32217806-32217825 None:intergenic 50.0%
GGAAGGACACTCCTCGTATT+AGG - chr6_4:32218566-32218585 Msa0985570:CDS 50.0%
! GTGTGTGTTTGGAATTGCGG+TGG - chr6_4:32218921-32218940 Msa0985570:intron 50.0%
CCCGCTTGTGAAAGAAACCA+GGG + chr6_4:32219030-32219049 None:intergenic 50.0%
CCCTGGTTTCTTTCACAAGC+GGG - chr6_4:32219027-32219046 Msa0985570:intron 50.0%
CCAACCAAACTCCAGATCAG+TGG + chr6_4:32219054-32219073 None:intergenic 50.0%
! CCACTGATCTGGAGTTTGGT+TGG - chr6_4:32219051-32219070 Msa0985570:intron 50.0%
! TGATCTGGAGTTTGGTTGGG+AGG - chr6_4:32219055-32219074 Msa0985570:intron 50.0%
CTCAGGTTCTCCCAATCAGT+TGG - chr6_4:32219120-32219139 Msa0985570:intron 50.0%
!! GCTGGTCTTGCAAAGCTCAT+TGG - chr6_4:32219443-32219462 Msa0985570:intron 50.0%
GCAAAGCTCATTGGACTTGC+AGG - chr6_4:32219452-32219471 Msa0985570:intron 50.0%
TGCAGGAGAGACCAATGTTC+AGG - chr6_4:32219469-32219488 Msa0985570:intron 50.0%
AGCCTTGCAGAACACCTCAT+TGG + chr6_4:32220084-32220103 None:intergenic 50.0%
AGCAGTGGCAGAACAGTAAG+TGG - chr6_4:32220110-32220129 Msa0985570:intron 50.0%
TTTGTGGATCCTAAGCAGCG+TGG - chr6_4:32220244-32220263 Msa0985570:intron 50.0%
ATGTTGGAGGAGCCGTCTAA+TGG + chr6_4:32220609-32220628 None:intergenic 50.0%
! GGCTCCTCCAACATTGATTG+TGG - chr6_4:32220615-32220634 Msa0985570:intron 50.0%
GCTGCTAACATGTTCTTCCC+TGG + chr6_4:32221045-32221064 None:intergenic 50.0%
GGGAAGAACATGTTAGCAGC+TGG - chr6_4:32221045-32221064 Msa0985570:intron 50.0%
CATGTACGGAAGCTCTTGCA+CGG - chr6_4:32221074-32221093 Msa0985570:intron 50.0%
TTCACTCTCGACCCTTCTCT+TGG - chr6_4:32221246-32221265 Msa0985570:CDS 50.0%
! TGCTCAGCTCTGACGAAAGT+CGG - chr6_4:32221367-32221386 Msa0985570:intron 50.0%
TGTGCGCTTCTACTGCCAAT+GGG + chr6_4:32221559-32221578 None:intergenic 50.0%
GCGCACACTCCTTGTCTTTA+TGG - chr6_4:32221572-32221591 Msa0985570:intron 50.0%
CAACGACAGACATTGCCTTC+TGG + chr6_4:32221751-32221770 None:intergenic 50.0%
AGTAGGACCATCCCAGTTCT+TGG + chr6_4:32222059-32222078 None:intergenic 50.0%
!!! CCCTTGTTTTAGGCTCTCTG+TGG - chr6_4:32222282-32222301 Msa0985570:intron 50.0%
TCCTTCTTGATGGAACAGGC+AGG - chr6_4:32223871-32223890 Msa0985570:intron 50.0%
TCCTGCCTGTTCCATCAAGA+AGG + chr6_4:32223875-32223894 None:intergenic 50.0%
TTCTTGATGGAACAGGCAGG+AGG - chr6_4:32223874-32223893 Msa0985570:intron 50.0%
! AGGGGTCGGTGTTTCAACTC+CGG + chr6_4:32217765-32217784 None:intergenic 55.0%
TACGATGTGCATCTGCGCTG+TGG + chr6_4:32218004-32218023 None:intergenic 55.0%
GCCCGCTTGTGAAAGAAACC+AGG + chr6_4:32219031-32219050 None:intergenic 55.0%
CGTGTGTCTGTGTCCGATAC+CGG - chr6_4:32220749-32220768 Msa0985570:intron 55.0%
GACTTTCGTCAGAGCTGAGC+AGG + chr6_4:32221368-32221387 None:intergenic 55.0%
! GCTCAGCTCTGACGAAAGTC+GGG - chr6_4:32221368-32221387 Msa0985570:intron 55.0%
GTGTGCGCTTCTACTGCCAA+TGG + chr6_4:32221560-32221579 None:intergenic 55.0%
ACGAAGGGAACGCCAAGAAC+TGG - chr6_4:32222044-32222063 Msa0985570:intron 55.0%
CGAAGGGAACGCCAAGAACT+GGG - chr6_4:32222045-32222064 Msa0985570:intron 55.0%
! TGCGGGAGCTTTAGTGCACT+TGG + chr6_4:32222615-32222634 None:intergenic 55.0%
AGGCTTTCACCGGCAAGGAA+AGG - chr6_4:32223899-32223918 Msa0985570:intron 55.0%
GGCTTTCACCGGCAAGGAAA+GGG - chr6_4:32223900-32223919 Msa0985570:intron 55.0%
GGAGAAGGGGGAATGGTGGT+GGG + chr6_4:32217588-32217607 None:intergenic 60.0%
AGGAGAAGGGGGAATGGTGG+TGG + chr6_4:32217589-32217608 None:intergenic 60.0%
GTGAGGAGAAGGGGGAATGG+TGG + chr6_4:32217592-32217611 None:intergenic 60.0%
ATCAGTGGTGGCCCTGAGCA+TGG + chr6_4:32218240-32218259 None:intergenic 60.0%
! GGGCCCACTGATCTGGAGTT+TGG - chr6_4:32219047-32219066 Msa0985570:intron 60.0%
TTCGTCAGAGCTGAGCAGGC+AGG + chr6_4:32221364-32221383 None:intergenic 60.0%
GGGAACGCCAAGAACTGGGA+TGG - chr6_4:32222049-32222068 Msa0985570:intron 60.0%
ACTAAAGCTCCCGCAGACGC+AGG - chr6_4:32222620-32222639 Msa0985570:intron 60.0%
CTAAAGCTCCCGCAGACGCA+GGG - chr6_4:32222621-32222640 Msa0985570:intron 60.0%
! CAAATGGTGGGACCCCTTCC+TGG + chr6_4:32222648-32222667 None:intergenic 60.0%
GGTCTCGGGTTCGAGTCTTG+TGG + chr6_4:32223435-32223454 None:intergenic 60.0%
GATGGAACAGGCAGGAGGAC+AGG - chr6_4:32223879-32223898 Msa0985570:intron 60.0%
GCAGGAGGACAGGCTTTCAC+CGG - chr6_4:32223889-32223908 Msa0985570:intron 60.0%
AGGACAGGCTTTCACCGGCA+AGG - chr6_4:32223894-32223913 Msa0985570:intron 60.0%
CACAAGCGGGCCCACTGATC+TGG - chr6_4:32219040-32219059 Msa0985570:intron 65.0%
TTCCTGGACCCTGCGTCTGC+GGG + chr6_4:32222632-32222651 None:intergenic 65.0%
CTTCCTGGACCCTGCGTCTG+CGG + chr6_4:32222633-32222652 None:intergenic 65.0%
GCAGACGCAGGGTCCAGGAA+GGG - chr6_4:32222632-32222651 Msa0985570:intron 65.0%
CAGACGCAGGGTCCAGGAAG+GGG - chr6_4:32222633-32222652 Msa0985570:intron 65.0%
CGCAGACGCAGGGTCCAGGA+AGG - chr6_4:32222631-32222650 Msa0985570:intron 70.0%
CTCCCGCAGACGCAGGGTCC+AGG - chr6_4:32222627-32222646 Msa0985570:intron 75.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 32217570 32224916 32217570 ID=Msa0985570;Name=Msa0985570
chr6_4 mRNA 32217570 32224916 32217570 ID=Msa0985570-mRNA-1;Parent=Msa0985570;Name=Msa0985570-mRNA-1;_AED=0.14;_eAED=0.14;_QI=426|0.81|0.75|1|0.81|0.75|12|220|318
chr6_4 exon 32217570 32217897 32217570 ID=Msa0985570-mRNA-1:exon:8595;Parent=Msa0985570-mRNA-1
chr6_4 exon 32218565 32218640 32218565 ID=Msa0985570-mRNA-1:exon:8594;Parent=Msa0985570-mRNA-1
chr6_4 exon 32218741 32218827 32218741 ID=Msa0985570-mRNA-1:exon:8593;Parent=Msa0985570-mRNA-1
chr6_4 exon 32220271 32220315 32220271 ID=Msa0985570-mRNA-1:exon:8592;Parent=Msa0985570-mRNA-1
chr6_4 exon 32220403 32220473 32220403 ID=Msa0985570-mRNA-1:exon:8591;Parent=Msa0985570-mRNA-1
chr6_4 exon 32221187 32221273 32221187 ID=Msa0985570-mRNA-1:exon:8590;Parent=Msa0985570-mRNA-1
chr6_4 exon 32221391 32221479 32221391 ID=Msa0985570-mRNA-1:exon:8589;Parent=Msa0985570-mRNA-1
chr6_4 exon 32221850 32221899 32221850 ID=Msa0985570-mRNA-1:exon:8588;Parent=Msa0985570-mRNA-1
chr6_4 exon 32222217 32222278 32222217 ID=Msa0985570-mRNA-1:exon:8587;Parent=Msa0985570-mRNA-1
chr6_4 exon 32222362 32222436 32222362 ID=Msa0985570-mRNA-1:exon:8586;Parent=Msa0985570-mRNA-1
chr6_4 exon 32222996 32223043 32222996 ID=Msa0985570-mRNA-1:exon:8585;Parent=Msa0985570-mRNA-1
chr6_4 exon 32224332 32224916 32224332 ID=Msa0985570-mRNA-1:exon:8584;Parent=Msa0985570-mRNA-1
chr6_4 five_prime_UTR 32224491 32224916 32224491 ID=Msa0985570-mRNA-1:five_prime_utr;Parent=Msa0985570-mRNA-1
chr6_4 CDS 32224332 32224490 32224332 ID=Msa0985570-mRNA-1:cds;Parent=Msa0985570-mRNA-1
chr6_4 CDS 32222996 32223043 32222996 ID=Msa0985570-mRNA-1:cds;Parent=Msa0985570-mRNA-1
chr6_4 CDS 32222362 32222436 32222362 ID=Msa0985570-mRNA-1:cds;Parent=Msa0985570-mRNA-1
chr6_4 CDS 32222217 32222278 32222217 ID=Msa0985570-mRNA-1:cds;Parent=Msa0985570-mRNA-1
chr6_4 CDS 32221850 32221899 32221850 ID=Msa0985570-mRNA-1:cds;Parent=Msa0985570-mRNA-1
chr6_4 CDS 32221391 32221479 32221391 ID=Msa0985570-mRNA-1:cds;Parent=Msa0985570-mRNA-1
chr6_4 CDS 32221187 32221273 32221187 ID=Msa0985570-mRNA-1:cds;Parent=Msa0985570-mRNA-1
chr6_4 CDS 32220403 32220473 32220403 ID=Msa0985570-mRNA-1:cds;Parent=Msa0985570-mRNA-1
chr6_4 CDS 32220271 32220315 32220271 ID=Msa0985570-mRNA-1:cds;Parent=Msa0985570-mRNA-1
chr6_4 CDS 32218741 32218827 32218741 ID=Msa0985570-mRNA-1:cds;Parent=Msa0985570-mRNA-1
chr6_4 CDS 32218565 32218640 32218565 ID=Msa0985570-mRNA-1:cds;Parent=Msa0985570-mRNA-1
chr6_4 CDS 32217790 32217897 32217790 ID=Msa0985570-mRNA-1:cds;Parent=Msa0985570-mRNA-1
chr6_4 three_prime_UTR 32217570 32217789 32217570 ID=Msa0985570-mRNA-1:three_prime_utr;Parent=Msa0985570-mRNA-1
Gene Sequence

>Msa0985570

ATGGACCACAGCGCAGATGCACATCGTACAGACTTGATGACCATAACACGTTTTGTGTTGAATGAACAGTCTAAGCATCCTGAATCACGTGGAGATTTTACCATCTTGCTTAATAACATTGTTCTTGGTTGCAAATTTGTTTGTTCTGCTGTTAACAAGGCTGGTCTTGCAAAGCTCATTGGACTTGCAGGAGAGACCAATGTTCAGGGTGAAGAGCAGAAGAAGCTTGATGTTCTTTCCAATGAGGTGTTCTGCAAGGCTTTGATAAGCAGTGGCAGAACATGCATCTTGGTTTCTGAAGAAGATGAGGATGCAATATTTGTGGATCCTAAGCAGCGTGGAAAGTACTGTGTTGTTTTTGATCCATTAGACGGCTCCTCCAACATTGATTGTGATAACCATGAACCAATCATAGATGATGTTCTGCAACCAGGGAAGAACATGTTAGCAGCTGGTTATTGCATGTACGGAAGCTCTTGCACGTTTGTGATAACCACTGGAAGTGGTGTTAATGGTTTCACTCTCGACCCTTCTCTTGGCGAGTTTATCCTAACTCACCCTGACATTAAGATCCCAAAGAAAGGCAAGATTTATTCGGTGAACGAAGGGAACGCCAAGAACTGGGATGGTCCTACTGCTGCTTATGTGGAGAAATGCAAGTTTCCAACAGATGGTTCACCAGCAAACATGGTAGCTGATGTTCATCGTACATTGCTATATGGAGGTACCTTTTTGTACCCTGCTGACAAAAAGAGTCCAAATGGAAAACTTCGTGTATTGTATGAAGTCTTCCCAATGTCCTTCTTGATGGAACAGGCAGGAGGACAGGCTTTCACCGGCAAGGAAAGGGCACTTGATTTAGTTCCAACAAAATTGCATGAAAGATCTCCCATATTTCTTGGTAGCTATGATGATATCGAGGAAATCAAAGCTCTTTATGCTGCAGAGGCTAAATAA

Protein sequence

>Msa0985570

MDHSADAHRTDLMTITRFVLNEQSKHPESRGDFTILLNNIVLGCKFVCSAVNKAGLAKLIGLAGETNVQGEEQKKLDVLSNEVFCKALISSGRTCILVSEEDEDAIFVDPKQRGKYCVVFDPLDGSSNIDCDNHEPIIDDVLQPGKNMLAAGYCMYGSSCTFVITTGSGVNGFTLDPSLGEFILTHPDIKIPKKGKIYSVNEGNAKNWDGPTAAYVEKCKFPTDGSPANMVADVHRTLLYGGTFLYPADKKSPNGKLRVLYEVFPMSFLMEQAGGQAFTGKERALDLVPTKLHERSPIFLGSYDDIEEIKALYAAEAK*