AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0708120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0708120 MtrunA17_Chr8g0390971 97.115 416 11 1 1 415 1 416 0.0 840
Msa0708120 MtrunA17_Chr1g0209861 42.094 449 188 17 11 411 9 433 2.93e-82 259
Msa0708120 MtrunA17_Chr5g0431351 42.029 138 53 4 274 399 94 216 1.58e-18 84.0
Msa0708120 MtrunA17_Chr4g0071811 44.660 103 46 1 297 399 293 384 4.42e-18 85.5
Msa0708120 MtrunA17_Chr7g0226451 38.235 170 54 8 276 399 187 351 7.64e-16 78.6
Msa0708120 MtrunA17_Chr4g0072871 49.296 71 34 1 330 400 273 341 3.73e-12 67.4
Msa0708120 MtrunA17_Chr3g0136701 70.455 44 13 0 357 400 232 275 1.19e-11 65.1
Msa0708120 MtrunA17_Chr7g0220721 70.455 44 13 0 357 400 327 370 1.72e-11 65.5
Msa0708120 MtrunA17_Chr1g0150471 68.182 44 14 0 357 400 255 298 1.99e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0708120 AT1G25440.1 43.151 438 160 16 11 399 6 403 4.83e-84 263
Msa0708120 AT1G68520.1 41.745 424 186 14 11 401 6 401 8.09e-81 254
Msa0708120 AT1G73870.1 38.391 435 188 17 1 401 1 389 2.64e-67 219
Msa0708120 AT1G49130.1 44.755 143 58 5 16 151 22 150 3.66e-27 110
Msa0708120 AT1G49130.1 48.113 106 35 2 295 400 236 321 5.01e-18 85.1
Msa0708120 AT1G49130.2 44.755 143 58 5 16 151 15 143 4.59e-27 110
Msa0708120 AT1G49130.2 48.113 106 35 2 295 400 229 314 5.18e-18 84.7
Msa0708120 AT1G07050.1 37.356 174 82 4 235 399 38 193 4.25e-20 88.2
Msa0708120 AT5G57180.2 44.030 134 55 4 269 399 309 425 6.07e-20 91.7
Msa0708120 AT4G25990.1 46.552 116 45 3 285 399 284 383 9.26e-20 90.9
Msa0708120 AT5G14370.1 40.323 124 38 4 294 399 231 336 1.16e-16 81.3
Msa0708120 AT4G25990.2 41.221 131 45 4 285 399 284 398 2.28e-16 80.9
Msa0708120 AT5G57180.1 42.188 128 54 4 269 393 309 419 2.46e-16 80.9
Msa0708120 AT4G25990.3 44.545 110 44 3 285 393 284 377 3.96e-16 80.1
Msa0708120 AT1G07050.2 35.119 168 82 4 235 393 38 187 6.71e-16 76.3
Msa0708120 AT5G57660.1 70.455 44 13 0 357 400 285 328 2.11e-11 65.5
Msa0708120 AT5G24930.1 70.455 44 13 0 357 400 295 338 2.31e-11 65.5
Msa0708120 AT2G24790.1 70.455 44 13 0 357 400 229 272 3.72e-11 63.9
Msa0708120 AT2G24790.1 53.030 66 27 1 16 77 2 67 5.09e-11 63.5
Msa0708120 AT2G24790.2 53.030 66 27 1 16 77 2 67 3.73e-11 63.2

Find 92 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAAACGTCCTTTCATTCT+TGG 0.215353 4_4:-81586248 None:intergenic
TGATTCATGGCAAAACTTAT+TGG 0.234314 4_4:+81585810 Msa0708120:CDS
TCAAATGTTGATGTTATATA+TGG 0.240127 4_4:+81586616 Msa0708120:three_prime_UTR
AACTTGGATTGATTAATATT+TGG 0.252165 4_4:+81586384 Msa0708120:three_prime_UTR
TGATGTTATATATGGTTAAT+TGG 0.276526 4_4:+81586624 Msa0708120:three_prime_UTR
TTGTAAGGAACAATAATAAT+AGG 0.284284 4_4:-81586582 None:intergenic
TTGTCATGGTTGTGACAATT+TGG 0.309873 4_4:+81584955 Msa0708120:CDS
ATCACATGCTCTTGCTGTCT+TGG 0.344245 4_4:-81584879 None:intergenic
ATGGAGAAGTAAGAAGCTTA+AGG 0.355490 4_4:+81586093 Msa0708120:CDS
TTTAATTAGTATAGTACTAA+TGG 0.357285 4_4:+81586511 Msa0708120:three_prime_UTR
TATGATTAAGTAGCTTAGTT+AGG 0.358015 4_4:-81586775 None:intergenic
TTTCAGGGTTCAAGTGTAGA+TGG 0.365142 4_4:+81586074 Msa0708120:intron
GGTTACCTAGTTGGTTATTC+CGG 0.370409 4_4:+81586645 Msa0708120:three_prime_UTR
AAATGAAATGTTAAAGGTTA+AGG 0.373350 4_4:+81585504 Msa0708120:CDS
TCTTCATCACCTCCGAGTTC+AGG 0.373850 4_4:-81585187 None:intergenic
TTCAATCTATCTCTAGCTTC+AGG 0.383752 4_4:+81586488 Msa0708120:three_prime_UTR
TCATGTCAGTGGTAATTAGT+TGG 0.390665 4_4:-81586311 None:intergenic
TGGTTAATTGGTTACCTAGT+TGG 0.403469 4_4:+81586636 Msa0708120:three_prime_UTR
CTTCCACTTGTTCCTGAACT+CGG 0.406110 4_4:+81585175 Msa0708120:CDS
TGGAGAAGTAAGAAGCTTAA+GGG 0.411931 4_4:+81586094 Msa0708120:CDS
TTGAATGTGAACTTCTTGTA+AGG 0.415816 4_4:-81586597 None:intergenic
TCAATTGTGATGATGATTCA+TGG 0.426751 4_4:+81585797 Msa0708120:CDS
TTTACTAGAGTTAATTGCTT+GGG 0.426932 4_4:+81586461 Msa0708120:three_prime_UTR
GATGCAGATGCAGGTGCCTT+GGG 0.430470 4_4:+81584854 Msa0708120:CDS
AAAGGGCTGACATCGAAAAC+TGG 0.442133 4_4:-81585274 None:intergenic
CCTTAGCAGACGCGGTTTGA+AGG 0.445349 4_4:-81585021 None:intergenic
AGAAGATAAGATATGAAGTA+AGG 0.448594 4_4:+81586204 Msa0708120:CDS
ATCAACTAGCTCATAATTGA+AGG 0.456236 4_4:-81586538 None:intergenic
CCTTCAAACCGCGTCTGCTA+AGG 0.473927 4_4:+81585021 Msa0708120:CDS
ACATGAAGAATATCATCAAC+TGG 0.480535 4_4:+81586328 Msa0708120:exon
GTTGAAAGTTTACTTGGTGT+TGG 0.483990 4_4:+81585406 Msa0708120:CDS
ACCTAGTTGGTTATTCCGGC+AGG 0.486903 4_4:+81586649 Msa0708120:three_prime_UTR
TTAATGGGAAGTGGTGGAGA+TGG 0.488245 4_4:+81586122 Msa0708120:CDS
GAGATTCGAGAGAATTCATC+AGG 0.489115 4_4:+81585436 Msa0708120:CDS
TCTTGCTGTCTTGGCTCCCA+AGG 0.495634 4_4:-81584870 None:intergenic
TTATAAACAAGAGAATGAAA+TGG 0.496628 4_4:+81585471 Msa0708120:CDS
TCATCACAATTGAACTTAGG+AGG 0.497589 4_4:-81585787 None:intergenic
CCTTTCAGTAATAGTAGTGT+TGG 0.498513 4_4:+81585640 Msa0708120:CDS
TTGAAAGTTTACTTGGTGTT+GGG 0.498767 4_4:+81585407 Msa0708120:CDS
TGATGCAGATGCAGGTGCCT+TGG 0.503435 4_4:+81584853 Msa0708120:CDS
GCTAATGTTGAAAGTTTACT+TGG 0.513191 4_4:+81585400 Msa0708120:CDS
GGAGGGTTTGCAGTAGTCCA+TGG 0.516903 4_4:-81585769 None:intergenic
AGCAAATTACCAAAAGTACA+TGG 0.521774 4_4:+81584658 None:intergenic
ATGGGAAGTGGTGGAGATGG+AGG 0.526179 4_4:+81586125 Msa0708120:CDS
ATGAAGAGGTTATTACTGAA+TGG 0.526407 4_4:+81585725 Msa0708120:CDS
TACAAGTCTCTAAATCGAAA+GGG 0.527173 4_4:-81585291 None:intergenic
GATGATGCTTTCCTTTGTCA+TGG 0.527738 4_4:+81584941 Msa0708120:CDS
GATTAAGTAGCTTAGTTAGG+AGG 0.529023 4_4:-81586772 None:intergenic
GGAGAAGTAAGAAGCTTAAG+GGG 0.532873 4_4:+81586095 Msa0708120:CDS
ATTAGCAAGTAGACACGAAA+GGG 0.537189 4_4:+81584994 Msa0708120:CDS
TCATCATCACAATTGAACTT+AGG 0.539550 4_4:-81585790 None:intergenic
GTACAAGTCTCTAAATCGAA+AGG 0.540349 4_4:-81585292 None:intergenic
CATCACAATTGAACTTAGGA+GGG 0.544271 4_4:-81585786 None:intergenic
TGATTAATATTTGGTGCATG+TGG 0.544592 4_4:+81586393 Msa0708120:three_prime_UTR
CTTTACTAGAGTTAATTGCT+TGG 0.546275 4_4:+81586460 Msa0708120:three_prime_UTR
GAAGAGAAGCAAGAGTATCA+AGG 0.553110 4_4:+81586147 Msa0708120:CDS
TTTGAGACTAAACTATGAAG+AGG 0.554254 4_4:+81585711 Msa0708120:CDS
GAAAAGAGACCAAGAATGAA+AGG 0.557120 4_4:+81586239 Msa0708120:CDS
GGCAAGGTTCTCCTTCTCCA+TGG 0.557589 4_4:+81585752 Msa0708120:CDS
ATTACTGAATGGAGCAGGCA+AGG 0.558438 4_4:+81585736 Msa0708120:CDS
AGGTTATTACTGAATGGAGC+AGG 0.563538 4_4:+81585731 Msa0708120:CDS
GAAACTAGACAATGTGATGA+AGG 0.569584 4_4:-81584720 None:intergenic
ATGAAAGGTGATGCAGATGC+AGG 0.575851 4_4:+81584845 Msa0708120:CDS
ACAACAACAGCAACGTCTCA+AGG 0.580637 4_4:+81585126 Msa0708120:CDS
ATAGTTCATTAGTAGCCTGC+CGG 0.594378 4_4:-81586664 None:intergenic
CAATTATGAGCTAGTTGATG+TGG 0.594949 4_4:+81586542 Msa0708120:three_prime_UTR
GGGCAATTAATGGGAAGTGG+TGG 0.598711 4_4:+81586116 Msa0708120:CDS
AGTTTGCAGAAAAGCAAACA+TGG 0.598896 4_4:-81586365 None:intergenic
GAAGGAGACACTAGTGTCAG+TGG 0.600992 4_4:-81584702 None:intergenic
GATGATATTCTTCATGTCAG+TGG 0.605262 4_4:-81586322 None:intergenic
CCTCCGAGTTCAGGAACAAG+TGG 0.605265 4_4:-81585178 None:intergenic
TATTAGCAAGTAGACACGAA+AGG 0.608632 4_4:+81584993 Msa0708120:CDS
TTTGCAGTAGTCCATGGAGA+AGG 0.610228 4_4:-81585763 None:intergenic
CCAACACTACTATTACTGAA+AGG 0.612166 4_4:-81585640 None:intergenic
TAACAACAACAGCACAAGCA+TGG 0.618954 4_4:+81585044 Msa0708120:CDS
GCAAATTACCAAAAGTACAT+GGG 0.619720 4_4:+81584659 None:intergenic
TGATATTGATGAGGCTGATG+AGG 0.627860 4_4:+81585231 Msa0708120:CDS
ACTACTTGTTGATATTGATG+AGG 0.630146 4_4:+81585222 Msa0708120:CDS
AATTGTCACAACCATGACAA+AGG 0.630486 4_4:-81584952 None:intergenic
AGTGTATACACTTCAACTAG+TGG 0.636434 4_4:+81586748 Msa0708120:three_prime_UTR
TCAACTAGCTCATAATTGAA+GGG 0.636673 4_4:-81586537 None:intergenic
CCAAAAGTACATGGGCAGAG+AGG 0.637429 4_4:+81584667 None:intergenic
TGTTGTTACCTTAGCAGACG+CGG 0.639555 4_4:-81585029 None:intergenic
CATGGCACAGTGGATTCACA+AGG 0.649315 4_4:+81585062 Msa0708120:CDS
TCTATGATTACAGACATGAA+AGG 0.650216 4_4:+81584830 Msa0708120:exon
GCCTGCCGGAATAACCAACT+AGG 0.660660 4_4:-81586650 None:intergenic
AAGGAGACACTAGTGTCAGT+GGG 0.663141 4_4:-81584701 None:intergenic
CTCGGAGGTGATGAAGAACA+AGG 0.666390 4_4:+81585193 Msa0708120:CDS
CCACTTGTTCCTGAACTCGG+AGG 0.668175 4_4:+81585178 Msa0708120:CDS
GTTTAAGAAGAAGAGCACGT+TGG 0.700628 4_4:+81584906 Msa0708120:CDS
GAGAAGTAAGAAGCTTAAGG+GGG 0.726133 4_4:+81586096 Msa0708120:CDS
ACAGCACAAGCATGGCACAG+TGG 0.751381 4_4:+81585052 Msa0708120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAAATGATTCAATTAA+TGG - chr4_4:81584758-81584777 None:intergenic 15.0%
!!! ATATTTTATTTTAAACGACA+AGG + chr4_4:81585930-81585949 Msa0708120:intron 15.0%
!!! TATTTTATTTTAAACGACAA+GGG + chr4_4:81585931-81585950 Msa0708120:intron 15.0%
!! TTTAATTAGTATAGTACTAA+TGG + chr4_4:81586511-81586530 Msa0708120:three_prime_UTR 15.0%
!! CAAAAAAATGATTCAATTAA+TGG - chr4_4:81584758-81584777 None:intergenic 15.0%
!!! ATATTTTATTTTAAACGACA+AGG + chr4_4:81585930-81585949 Msa0708120:intron 15.0%
!!! TATTTTATTTTAAACGACAA+GGG + chr4_4:81585931-81585950 Msa0708120:intron 15.0%
!! TTTAATTAGTATAGTACTAA+TGG + chr4_4:81586511-81586530 Msa0708120:three_prime_UTR 15.0%
!! TTATAAACAAGAGAATGAAA+TGG + chr4_4:81585471-81585490 Msa0708120:CDS 20.0%
!! ATCCAAAAATGAAATGTTAA+AGG + chr4_4:81585498-81585517 Msa0708120:CDS 20.0%
!!! AACCTTTAACATTTCATTTT+TGG - chr4_4:81585503-81585522 None:intergenic 20.0%
!! AAATGAAATGTTAAAGGTTA+AGG + chr4_4:81585504-81585523 Msa0708120:CDS 20.0%
!!! TTTTGTGAATATTGATTTCA+GGG + chr4_4:81586059-81586078 Msa0708120:intron 20.0%
!! AACTTGGATTGATTAATATT+TGG + chr4_4:81586384-81586403 Msa0708120:three_prime_UTR 20.0%
!! TTGTAAGGAACAATAATAAT+AGG - chr4_4:81586585-81586604 None:intergenic 20.0%
!! TCAAATGTTGATGTTATATA+TGG + chr4_4:81586616-81586635 Msa0708120:three_prime_UTR 20.0%
!! TGATGTTATATATGGTTAAT+TGG + chr4_4:81586624-81586643 Msa0708120:three_prime_UTR 20.0%
!! TTATAAACAAGAGAATGAAA+TGG + chr4_4:81585471-81585490 Msa0708120:CDS 20.0%
!! ATCCAAAAATGAAATGTTAA+AGG + chr4_4:81585498-81585517 Msa0708120:CDS 20.0%
!!! AACCTTTAACATTTCATTTT+TGG - chr4_4:81585503-81585522 None:intergenic 20.0%
!! AAATGAAATGTTAAAGGTTA+AGG + chr4_4:81585504-81585523 Msa0708120:CDS 20.0%
!!! TTTTGTGAATATTGATTTCA+GGG + chr4_4:81586059-81586078 Msa0708120:intron 20.0%
!! AACTTGGATTGATTAATATT+TGG + chr4_4:81586384-81586403 Msa0708120:three_prime_UTR 20.0%
!! TTGTAAGGAACAATAATAAT+AGG - chr4_4:81586585-81586604 None:intergenic 20.0%
!! TCAAATGTTGATGTTATATA+TGG + chr4_4:81586616-81586635 Msa0708120:three_prime_UTR 20.0%
!! TGATGTTATATATGGTTAAT+TGG + chr4_4:81586624-81586643 Msa0708120:three_prime_UTR 20.0%
!!! GTTTTGTGAATATTGATTTC+AGG + chr4_4:81586058-81586077 Msa0708120:intron 25.0%
! AGAAGATAAGATATGAAGTA+AGG + chr4_4:81586204-81586223 Msa0708120:CDS 25.0%
! TTTACTAGAGTTAATTGCTT+GGG + chr4_4:81586461-81586480 Msa0708120:three_prime_UTR 25.0%
!!! GTTTTGTGAATATTGATTTC+AGG + chr4_4:81586058-81586077 Msa0708120:intron 25.0%
! AGAAGATAAGATATGAAGTA+AGG + chr4_4:81586204-81586223 Msa0708120:CDS 25.0%
! TTTACTAGAGTTAATTGCTT+GGG + chr4_4:81586461-81586480 Msa0708120:three_prime_UTR 25.0%
TCTATGATTACAGACATGAA+AGG + chr4_4:81584830-81584849 Msa0708120:exon 30.0%
! ACTACTTGTTGATATTGATG+AGG + chr4_4:81585222-81585241 Msa0708120:CDS 30.0%
TACAAGTCTCTAAATCGAAA+GGG - chr4_4:81585294-81585313 None:intergenic 30.0%
!!! AAATGATGCTGTTGATTTTG+AGG + chr4_4:81585321-81585340 Msa0708120:CDS 30.0%
GCTAATGTTGAAAGTTTACT+TGG + chr4_4:81585400-81585419 Msa0708120:CDS 30.0%
!! TTGAAAGTTTACTTGGTGTT+GGG + chr4_4:81585407-81585426 Msa0708120:CDS 30.0%
! TTTGAGACTAAACTATGAAG+AGG + chr4_4:81585711-81585730 Msa0708120:CDS 30.0%
ATGAAGAGGTTATTACTGAA+TGG + chr4_4:81585725-81585744 Msa0708120:CDS 30.0%
TCATCATCACAATTGAACTT+AGG - chr4_4:81585793-81585812 None:intergenic 30.0%
! TCAATTGTGATGATGATTCA+TGG + chr4_4:81585797-81585816 Msa0708120:CDS 30.0%
TGATTCATGGCAAAACTTAT+TGG + chr4_4:81585810-81585829 Msa0708120:CDS 30.0%
TTCAGTGATAAACAAGTAAG+TGG - chr4_4:81585994-81586013 None:intergenic 30.0%
ACATGAAGAATATCATCAAC+TGG + chr4_4:81586328-81586347 Msa0708120:exon 30.0%
!! TGATTAATATTTGGTGCATG+TGG + chr4_4:81586393-81586412 Msa0708120:three_prime_UTR 30.0%
CTTTACTAGAGTTAATTGCT+TGG + chr4_4:81586460-81586479 Msa0708120:three_prime_UTR 30.0%
TCAACTAGCTCATAATTGAA+GGG - chr4_4:81586540-81586559 None:intergenic 30.0%
ATCAACTAGCTCATAATTGA+AGG - chr4_4:81586541-81586560 None:intergenic 30.0%
TTGAATGTGAACTTCTTGTA+AGG - chr4_4:81586600-81586619 None:intergenic 30.0%
TCTATGATTACAGACATGAA+AGG + chr4_4:81584830-81584849 Msa0708120:exon 30.0%
! ACTACTTGTTGATATTGATG+AGG + chr4_4:81585222-81585241 Msa0708120:CDS 30.0%
TACAAGTCTCTAAATCGAAA+GGG - chr4_4:81585294-81585313 None:intergenic 30.0%
!!! AAATGATGCTGTTGATTTTG+AGG + chr4_4:81585321-81585340 Msa0708120:CDS 30.0%
GCTAATGTTGAAAGTTTACT+TGG + chr4_4:81585400-81585419 Msa0708120:CDS 30.0%
!! TTGAAAGTTTACTTGGTGTT+GGG + chr4_4:81585407-81585426 Msa0708120:CDS 30.0%
! TTTGAGACTAAACTATGAAG+AGG + chr4_4:81585711-81585730 Msa0708120:CDS 30.0%
ATGAAGAGGTTATTACTGAA+TGG + chr4_4:81585725-81585744 Msa0708120:CDS 30.0%
TCATCATCACAATTGAACTT+AGG - chr4_4:81585793-81585812 None:intergenic 30.0%
! TCAATTGTGATGATGATTCA+TGG + chr4_4:81585797-81585816 Msa0708120:CDS 30.0%
TGATTCATGGCAAAACTTAT+TGG + chr4_4:81585810-81585829 Msa0708120:CDS 30.0%
TTCAGTGATAAACAAGTAAG+TGG - chr4_4:81585994-81586013 None:intergenic 30.0%
ACATGAAGAATATCATCAAC+TGG + chr4_4:81586328-81586347 Msa0708120:exon 30.0%
!! TGATTAATATTTGGTGCATG+TGG + chr4_4:81586393-81586412 Msa0708120:three_prime_UTR 30.0%
CTTTACTAGAGTTAATTGCT+TGG + chr4_4:81586460-81586479 Msa0708120:three_prime_UTR 30.0%
TCAACTAGCTCATAATTGAA+GGG - chr4_4:81586540-81586559 None:intergenic 30.0%
ATCAACTAGCTCATAATTGA+AGG - chr4_4:81586541-81586560 None:intergenic 30.0%
TTGAATGTGAACTTCTTGTA+AGG - chr4_4:81586600-81586619 None:intergenic 30.0%
GAAACTAGACAATGTGATGA+AGG - chr4_4:81584723-81584742 None:intergenic 35.0%
AATTGTCACAACCATGACAA+AGG - chr4_4:81584955-81584974 None:intergenic 35.0%
TTGTCATGGTTGTGACAATT+TGG + chr4_4:81584955-81584974 Msa0708120:CDS 35.0%
TATTAGCAAGTAGACACGAA+AGG + chr4_4:81584993-81585012 Msa0708120:CDS 35.0%
ATTAGCAAGTAGACACGAAA+GGG + chr4_4:81584994-81585013 Msa0708120:CDS 35.0%
!! TCGACGAATTTTTGTTGTGA+CGG - chr4_4:81585102-81585121 None:intergenic 35.0%
GTACAAGTCTCTAAATCGAA+AGG - chr4_4:81585295-81585314 None:intergenic 35.0%
!! TTTTGAGGAAATGTGTGACT+TGG + chr4_4:81585336-81585355 Msa0708120:CDS 35.0%
!! GTTGAAAGTTTACTTGGTGT+TGG + chr4_4:81585406-81585425 Msa0708120:CDS 35.0%
! TTTTGACATGACAAGTGATG+AGG + chr4_4:81585555-81585574 Msa0708120:CDS 35.0%
! CAAGTGATGAGGTTTTTCAT+TGG + chr4_4:81585566-81585585 Msa0708120:CDS 35.0%
CCAACACTACTATTACTGAA+AGG - chr4_4:81585643-81585662 None:intergenic 35.0%
CCTTTCAGTAATAGTAGTGT+TGG + chr4_4:81585640-81585659 Msa0708120:CDS 35.0%
CATCACAATTGAACTTAGGA+GGG - chr4_4:81585789-81585808 None:intergenic 35.0%
TCATCACAATTGAACTTAGG+AGG - chr4_4:81585790-81585809 None:intergenic 35.0%
ATGGAGAAGTAAGAAGCTTA+AGG + chr4_4:81586093-81586112 Msa0708120:CDS 35.0%
TGGAGAAGTAAGAAGCTTAA+GGG + chr4_4:81586094-81586113 Msa0708120:CDS 35.0%
GAAAAGAGACCAAGAATGAA+AGG + chr4_4:81586239-81586258 Msa0708120:CDS 35.0%
ACAAAACGTCCTTTCATTCT+TGG - chr4_4:81586251-81586270 None:intergenic 35.0%
!! TGAAAGGACGTTTTGTTAAG+AGG + chr4_4:81586255-81586274 Msa0708120:CDS 35.0%
TCATGTCAGTGGTAATTAGT+TGG - chr4_4:81586314-81586333 None:intergenic 35.0%
GATGATATTCTTCATGTCAG+TGG - chr4_4:81586325-81586344 None:intergenic 35.0%
AGTTTGCAGAAAAGCAAACA+TGG - chr4_4:81586368-81586387 None:intergenic 35.0%
!! TGTTTGCTTTTCTGCAAACT+TGG + chr4_4:81586368-81586387 Msa0708120:three_prime_UTR 35.0%
! TTCAATCTATCTCTAGCTTC+AGG + chr4_4:81586488-81586507 Msa0708120:three_prime_UTR 35.0%
! CAATTATGAGCTAGTTGATG+TGG + chr4_4:81586542-81586561 Msa0708120:three_prime_UTR 35.0%
TGGTTAATTGGTTACCTAGT+TGG + chr4_4:81586636-81586655 Msa0708120:three_prime_UTR 35.0%
AGTGTATACACTTCAACTAG+TGG + chr4_4:81586748-81586767 Msa0708120:three_prime_UTR 35.0%
GAAACTAGACAATGTGATGA+AGG - chr4_4:81584723-81584742 None:intergenic 35.0%
AATTGTCACAACCATGACAA+AGG - chr4_4:81584955-81584974 None:intergenic 35.0%
TTGTCATGGTTGTGACAATT+TGG + chr4_4:81584955-81584974 Msa0708120:CDS 35.0%
TATTAGCAAGTAGACACGAA+AGG + chr4_4:81584993-81585012 Msa0708120:CDS 35.0%
ATTAGCAAGTAGACACGAAA+GGG + chr4_4:81584994-81585013 Msa0708120:CDS 35.0%
!! TCGACGAATTTTTGTTGTGA+CGG - chr4_4:81585102-81585121 None:intergenic 35.0%
GTACAAGTCTCTAAATCGAA+AGG - chr4_4:81585295-81585314 None:intergenic 35.0%
!! TTTTGAGGAAATGTGTGACT+TGG + chr4_4:81585336-81585355 Msa0708120:CDS 35.0%
!! GTTGAAAGTTTACTTGGTGT+TGG + chr4_4:81585406-81585425 Msa0708120:CDS 35.0%
! TTTTGACATGACAAGTGATG+AGG + chr4_4:81585555-81585574 Msa0708120:CDS 35.0%
! CAAGTGATGAGGTTTTTCAT+TGG + chr4_4:81585566-81585585 Msa0708120:CDS 35.0%
CCAACACTACTATTACTGAA+AGG - chr4_4:81585643-81585662 None:intergenic 35.0%
CCTTTCAGTAATAGTAGTGT+TGG + chr4_4:81585640-81585659 Msa0708120:CDS 35.0%
CATCACAATTGAACTTAGGA+GGG - chr4_4:81585789-81585808 None:intergenic 35.0%
TCATCACAATTGAACTTAGG+AGG - chr4_4:81585790-81585809 None:intergenic 35.0%
ATGGAGAAGTAAGAAGCTTA+AGG + chr4_4:81586093-81586112 Msa0708120:CDS 35.0%
TGGAGAAGTAAGAAGCTTAA+GGG + chr4_4:81586094-81586113 Msa0708120:CDS 35.0%
GAAAAGAGACCAAGAATGAA+AGG + chr4_4:81586239-81586258 Msa0708120:CDS 35.0%
ACAAAACGTCCTTTCATTCT+TGG - chr4_4:81586251-81586270 None:intergenic 35.0%
!! TGAAAGGACGTTTTGTTAAG+AGG + chr4_4:81586255-81586274 Msa0708120:CDS 35.0%
TCATGTCAGTGGTAATTAGT+TGG - chr4_4:81586314-81586333 None:intergenic 35.0%
GATGATATTCTTCATGTCAG+TGG - chr4_4:81586325-81586344 None:intergenic 35.0%
AGTTTGCAGAAAAGCAAACA+TGG - chr4_4:81586368-81586387 None:intergenic 35.0%
!! TGTTTGCTTTTCTGCAAACT+TGG + chr4_4:81586368-81586387 Msa0708120:three_prime_UTR 35.0%
! TTCAATCTATCTCTAGCTTC+AGG + chr4_4:81586488-81586507 Msa0708120:three_prime_UTR 35.0%
! CAATTATGAGCTAGTTGATG+TGG + chr4_4:81586542-81586561 Msa0708120:three_prime_UTR 35.0%
TGGTTAATTGGTTACCTAGT+TGG + chr4_4:81586636-81586655 Msa0708120:three_prime_UTR 35.0%
AGTGTATACACTTCAACTAG+TGG + chr4_4:81586748-81586767 Msa0708120:three_prime_UTR 35.0%
! GTTTAAGAAGAAGAGCACGT+TGG + chr4_4:81584906-81584925 Msa0708120:CDS 40.0%
GATGATGCTTTCCTTTGTCA+TGG + chr4_4:81584941-81584960 Msa0708120:CDS 40.0%
TAACAACAACAGCACAAGCA+TGG + chr4_4:81585044-81585063 Msa0708120:CDS 40.0%
!! GACGAATTTTTGTTGTGACG+GGG - chr4_4:81585100-81585119 None:intergenic 40.0%
!! CGACGAATTTTTGTTGTGAC+GGG - chr4_4:81585101-81585120 None:intergenic 40.0%
TGATATTGATGAGGCTGATG+AGG + chr4_4:81585231-81585250 Msa0708120:CDS 40.0%
GAGATTCGAGAGAATTCATC+AGG + chr4_4:81585436-81585455 Msa0708120:CDS 40.0%
AGGTTATTACTGAATGGAGC+AGG + chr4_4:81585731-81585750 Msa0708120:CDS 40.0%
TTTCAGGGTTCAAGTGTAGA+TGG + chr4_4:81586074-81586093 Msa0708120:intron 40.0%
GGAGAAGTAAGAAGCTTAAG+GGG + chr4_4:81586095-81586114 Msa0708120:CDS 40.0%
GAGAAGTAAGAAGCTTAAGG+GGG + chr4_4:81586096-81586115 Msa0708120:CDS 40.0%
AAGCTTAAGGGGGCAATTAA+TGG + chr4_4:81586106-81586125 Msa0708120:CDS 40.0%
AGCTTAAGGGGGCAATTAAT+GGG + chr4_4:81586107-81586126 Msa0708120:CDS 40.0%
!! GAAGAGAAGCAAGAGTATCA+AGG + chr4_4:81586147-81586166 Msa0708120:CDS 40.0%
GGTTACCTAGTTGGTTATTC+CGG + chr4_4:81586645-81586664 Msa0708120:three_prime_UTR 40.0%
ATAGTTCATTAGTAGCCTGC+CGG - chr4_4:81586667-81586686 None:intergenic 40.0%
! GTTTAAGAAGAAGAGCACGT+TGG + chr4_4:81584906-81584925 Msa0708120:CDS 40.0%
GATGATGCTTTCCTTTGTCA+TGG + chr4_4:81584941-81584960 Msa0708120:CDS 40.0%
TAACAACAACAGCACAAGCA+TGG + chr4_4:81585044-81585063 Msa0708120:CDS 40.0%
!! GACGAATTTTTGTTGTGACG+GGG - chr4_4:81585100-81585119 None:intergenic 40.0%
!! CGACGAATTTTTGTTGTGAC+GGG - chr4_4:81585101-81585120 None:intergenic 40.0%
TGATATTGATGAGGCTGATG+AGG + chr4_4:81585231-81585250 Msa0708120:CDS 40.0%
GAGATTCGAGAGAATTCATC+AGG + chr4_4:81585436-81585455 Msa0708120:CDS 40.0%
AGGTTATTACTGAATGGAGC+AGG + chr4_4:81585731-81585750 Msa0708120:CDS 40.0%
TTTCAGGGTTCAAGTGTAGA+TGG + chr4_4:81586074-81586093 Msa0708120:intron 40.0%
GGAGAAGTAAGAAGCTTAAG+GGG + chr4_4:81586095-81586114 Msa0708120:CDS 40.0%
GAGAAGTAAGAAGCTTAAGG+GGG + chr4_4:81586096-81586115 Msa0708120:CDS 40.0%
AAGCTTAAGGGGGCAATTAA+TGG + chr4_4:81586106-81586125 Msa0708120:CDS 40.0%
AGCTTAAGGGGGCAATTAAT+GGG + chr4_4:81586107-81586126 Msa0708120:CDS 40.0%
!! GAAGAGAAGCAAGAGTATCA+AGG + chr4_4:81586147-81586166 Msa0708120:CDS 40.0%
GGTTACCTAGTTGGTTATTC+CGG + chr4_4:81586645-81586664 Msa0708120:three_prime_UTR 40.0%
ATAGTTCATTAGTAGCCTGC+CGG - chr4_4:81586667-81586686 None:intergenic 40.0%
AAGGAGACACTAGTGTCAGT+GGG - chr4_4:81584704-81584723 None:intergenic 45.0%
ATGAAAGGTGATGCAGATGC+AGG + chr4_4:81584845-81584864 Msa0708120:CDS 45.0%
! ATCACATGCTCTTGCTGTCT+TGG - chr4_4:81584882-81584901 None:intergenic 45.0%
TGTTGTTACCTTAGCAGACG+CGG - chr4_4:81585032-81585051 None:intergenic 45.0%
ACAACAACAGCAACGTCTCA+AGG + chr4_4:81585126-81585145 Msa0708120:CDS 45.0%
CTTCCACTTGTTCCTGAACT+CGG + chr4_4:81585175-81585194 Msa0708120:CDS 45.0%
AAAGGGCTGACATCGAAAAC+TGG - chr4_4:81585277-81585296 None:intergenic 45.0%
ATTACTGAATGGAGCAGGCA+AGG + chr4_4:81585736-81585755 Msa0708120:CDS 45.0%
TTTGCAGTAGTCCATGGAGA+AGG - chr4_4:81585766-81585785 None:intergenic 45.0%
GGTTGAATCTCAGTAGATCG+TGG + chr4_4:81585952-81585971 Msa0708120:intron 45.0%
! TTAATGGGAAGTGGTGGAGA+TGG + chr4_4:81586122-81586141 Msa0708120:CDS 45.0%
! AAGAGGACAGCATGTTTTGC+TGG + chr4_4:81586272-81586291 Msa0708120:CDS 45.0%
AAGGAGACACTAGTGTCAGT+GGG - chr4_4:81584704-81584723 None:intergenic 45.0%
ATGAAAGGTGATGCAGATGC+AGG + chr4_4:81584845-81584864 Msa0708120:CDS 45.0%
! ATCACATGCTCTTGCTGTCT+TGG - chr4_4:81584882-81584901 None:intergenic 45.0%
TGTTGTTACCTTAGCAGACG+CGG - chr4_4:81585032-81585051 None:intergenic 45.0%
ACAACAACAGCAACGTCTCA+AGG + chr4_4:81585126-81585145 Msa0708120:CDS 45.0%
CTTCCACTTGTTCCTGAACT+CGG + chr4_4:81585175-81585194 Msa0708120:CDS 45.0%
AAAGGGCTGACATCGAAAAC+TGG - chr4_4:81585277-81585296 None:intergenic 45.0%
ATTACTGAATGGAGCAGGCA+AGG + chr4_4:81585736-81585755 Msa0708120:CDS 45.0%
TTTGCAGTAGTCCATGGAGA+AGG - chr4_4:81585766-81585785 None:intergenic 45.0%
GGTTGAATCTCAGTAGATCG+TGG + chr4_4:81585952-81585971 Msa0708120:intron 45.0%
! TTAATGGGAAGTGGTGGAGA+TGG + chr4_4:81586122-81586141 Msa0708120:CDS 45.0%
! AAGAGGACAGCATGTTTTGC+TGG + chr4_4:81586272-81586291 Msa0708120:CDS 45.0%
GAAGGAGACACTAGTGTCAG+TGG - chr4_4:81584705-81584724 None:intergenic 50.0%
! CATGGCACAGTGGATTCACA+AGG + chr4_4:81585062-81585081 Msa0708120:CDS 50.0%
TCTTCATCACCTCCGAGTTC+AGG - chr4_4:81585190-81585209 None:intergenic 50.0%
CTCGGAGGTGATGAAGAACA+AGG + chr4_4:81585193-81585212 Msa0708120:CDS 50.0%
AGGGGGCAATTAATGGGAAG+TGG + chr4_4:81586113-81586132 Msa0708120:CDS 50.0%
GGGCAATTAATGGGAAGTGG+TGG + chr4_4:81586116-81586135 Msa0708120:CDS 50.0%
! AGGACAGCATGTTTTGCTGG+AGG + chr4_4:81586275-81586294 Msa0708120:CDS 50.0%
ACCTAGTTGGTTATTCCGGC+AGG + chr4_4:81586649-81586668 Msa0708120:three_prime_UTR 50.0%
GAAGGAGACACTAGTGTCAG+TGG - chr4_4:81584705-81584724 None:intergenic 50.0%
! CATGGCACAGTGGATTCACA+AGG + chr4_4:81585062-81585081 Msa0708120:CDS 50.0%
TCTTCATCACCTCCGAGTTC+AGG - chr4_4:81585190-81585209 None:intergenic 50.0%
CTCGGAGGTGATGAAGAACA+AGG + chr4_4:81585193-81585212 Msa0708120:CDS 50.0%
AGGGGGCAATTAATGGGAAG+TGG + chr4_4:81586113-81586132 Msa0708120:CDS 50.0%
GGGCAATTAATGGGAAGTGG+TGG + chr4_4:81586116-81586135 Msa0708120:CDS 50.0%
! AGGACAGCATGTTTTGCTGG+AGG + chr4_4:81586275-81586294 Msa0708120:CDS 50.0%
ACCTAGTTGGTTATTCCGGC+AGG + chr4_4:81586649-81586668 Msa0708120:three_prime_UTR 50.0%
TGATGCAGATGCAGGTGCCT+TGG + chr4_4:81584853-81584872 Msa0708120:CDS 55.0%
GATGCAGATGCAGGTGCCTT+GGG + chr4_4:81584854-81584873 Msa0708120:CDS 55.0%
! TCTTGCTGTCTTGGCTCCCA+AGG - chr4_4:81584873-81584892 None:intergenic 55.0%
CCTTAGCAGACGCGGTTTGA+AGG - chr4_4:81585024-81585043 None:intergenic 55.0%
CCTTCAAACCGCGTCTGCTA+AGG + chr4_4:81585021-81585040 Msa0708120:CDS 55.0%
ACAGCACAAGCATGGCACAG+TGG + chr4_4:81585052-81585071 Msa0708120:CDS 55.0%
CCTCCGAGTTCAGGAACAAG+TGG - chr4_4:81585181-81585200 None:intergenic 55.0%
CCACTTGTTCCTGAACTCGG+AGG + chr4_4:81585178-81585197 Msa0708120:CDS 55.0%
GGCAAGGTTCTCCTTCTCCA+TGG + chr4_4:81585752-81585771 Msa0708120:CDS 55.0%
GGAGGGTTTGCAGTAGTCCA+TGG - chr4_4:81585772-81585791 None:intergenic 55.0%
! ATGGGAAGTGGTGGAGATGG+AGG + chr4_4:81586125-81586144 Msa0708120:CDS 55.0%
GCCTGCCGGAATAACCAACT+AGG - chr4_4:81586653-81586672 None:intergenic 55.0%
TGATGCAGATGCAGGTGCCT+TGG + chr4_4:81584853-81584872 Msa0708120:CDS 55.0%
GATGCAGATGCAGGTGCCTT+GGG + chr4_4:81584854-81584873 Msa0708120:CDS 55.0%
! TCTTGCTGTCTTGGCTCCCA+AGG - chr4_4:81584873-81584892 None:intergenic 55.0%
CCTTAGCAGACGCGGTTTGA+AGG - chr4_4:81585024-81585043 None:intergenic 55.0%
CCTTCAAACCGCGTCTGCTA+AGG + chr4_4:81585021-81585040 Msa0708120:CDS 55.0%
ACAGCACAAGCATGGCACAG+TGG + chr4_4:81585052-81585071 Msa0708120:CDS 55.0%
CCTCCGAGTTCAGGAACAAG+TGG - chr4_4:81585181-81585200 None:intergenic 55.0%
CCACTTGTTCCTGAACTCGG+AGG + chr4_4:81585178-81585197 Msa0708120:CDS 55.0%
GGCAAGGTTCTCCTTCTCCA+TGG + chr4_4:81585752-81585771 Msa0708120:CDS 55.0%
GGAGGGTTTGCAGTAGTCCA+TGG - chr4_4:81585772-81585791 None:intergenic 55.0%
! ATGGGAAGTGGTGGAGATGG+AGG + chr4_4:81586125-81586144 Msa0708120:CDS 55.0%
GCCTGCCGGAATAACCAACT+AGG - chr4_4:81586653-81586672 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 81584673 81586785 81584673 ID=Msa0708120;Name=Msa0708120
chr4_4 mRNA 81584673 81586785 81584673 ID=Msa0708120-mRNA-1;Parent=Msa0708120;Name=Msa0708120-mRNA-1;_AED=0.00;_eAED=0.00;_QI=160|1|1|1|1|1|2|457|415
chr4_4 exon 81584673 81585831 81584673 ID=Msa0708120-mRNA-1:exon:26659;Parent=Msa0708120-mRNA-1
chr4_4 exon 81586080 81586785 81586080 ID=Msa0708120-mRNA-1:exon:26660;Parent=Msa0708120-mRNA-1
chr4_4 five_prime_UTR 81584673 81584832 81584673 ID=Msa0708120-mRNA-1:five_prime_utr;Parent=Msa0708120-mRNA-1
chr4_4 CDS 81584833 81585831 81584833 ID=Msa0708120-mRNA-1:cds;Parent=Msa0708120-mRNA-1
chr4_4 CDS 81586080 81586328 81586080 ID=Msa0708120-mRNA-1:cds;Parent=Msa0708120-mRNA-1
chr4_4 three_prime_UTR 81586329 81586785 81586329 ID=Msa0708120-mRNA-1:three_prime_utr;Parent=Msa0708120-mRNA-1
Gene Sequence

>Msa0708120

ATGATTACAGACATGAAAGGTGATGCAGATGCAGGTGCCTTGGGAGCCAAGACAGCAAGAGCATGTGATAGCTGTTTAAGAAGAAGAGCACGTTGGTTTTGTGCTGCAGATGATGCTTTCCTTTGTCATGGTTGTGACAATTTGGTTCACTCTGCAAATCTATTAGCAAGTAGACACGAAAGGGTTCGCCTTCAAACCGCGTCTGCTAAGGTAACAACAACAGCACAAGCATGGCACAGTGGATTCACAAGGAAAGCAAGAACGCCCCGTCACAACAAAAATTCGTCGATTCAACAACAACAGCAACGTCTCAAGGAAAAAGTTCTTTTCAATACTAGTTTTCTTCCACTTGTTCCTGAACTCGGAGGTGATGAAGAACAAGGACAAGAACTACTTGTTGATATTGATGAGGCTGATGAGGAGCAGTTGCTGTGTCGTGTGCCAGTTTTCGATGTCAGCCCTTTCGATTTAGAGACTTGTACTGTGAAAAATGATGCTGTTGATTTTGAGGAAATGTGTGACTTGGATAGTTTCTGTGAGTTTGATGTTGATCTTGCTGAATTTGCAGCTAATGTTGAAAGTTTACTTGGTGTTGGGAGTAGTGAGATTCGAGAGAATTCATCAGGACAAGTGTTTGATTATAAACAAGAGAATGAAATGGATGCATCCAAAAATGAAATGTTAAAGGTTAAGGATGAAGAACTTGATGATTTAGAATCAGTTTTTGACATGACAAGTGATGAGGTTTTTCATTGGAATATTGATCATAATGATGTATCACTAGCACAACAAGAGAAAGAGTTTATGCCTTTCAGTAATAGTAGTGTTGGTTACAGTGAGAGTGTTATTACTAAAGAAGAAACAAAGAGAGAGAGATTTTTGAGACTAAACTATGAAGAGGTTATTACTGAATGGAGCAGGCAAGGTTCTCCTTCTCCATGGACTACTGCAAACCCTCCTAAGTTCAATTGTGATGATGATTCATGGCAAAACTTATTGGGTTCAAGTGTAGATGGAGAAGTAAGAAGCTTAAGGGGGCAATTAATGGGAAGTGGTGGAGATGGAGGAAGAGAAGCAAGAGTATCAAGGTACAGAGAGAAAAGAAGAACACGTTTATTTGCAAAGAAGATAAGATATGAAGTAAGGAAATTGAATGCAGAAAAGAGACCAAGAATGAAAGGACGTTTTGTTAAGAGGACAGCATGTTTTGCTGGAGGAGCTACTTCTTTTCCAACTAATTACCACTGA

Protein sequence

>Msa0708120

MITDMKGDADAGALGAKTARACDSCLRRRARWFCAADDAFLCHGCDNLVHSANLLASRHERVRLQTASAKVTTTAQAWHSGFTRKARTPRHNKNSSIQQQQQRLKEKVLFNTSFLPLVPELGGDEEQGQELLVDIDEADEEQLLCRVPVFDVSPFDLETCTVKNDAVDFEEMCDLDSFCEFDVDLAEFAANVESLLGVGSSEIRENSSGQVFDYKQENEMDASKNEMLKVKDEELDDLESVFDMTSDEVFHWNIDHNDVSLAQQEKEFMPFSNSSVGYSESVITKEETKRERFLRLNYEEVITEWSRQGSPSPWTTANPPKFNCDDDSWQNLLGSSVDGEVRSLRGQLMGSGGDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTACFAGGATSFPTNYH*