AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0134060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0134060 MtrunA17_Chr1g0203511 95.370 216 8 1 1 216 41 254 5.84e-150 416
Msa0134060 MtrunA17_Chr6g0470661 67.532 231 58 4 1 216 6 234 2.51e-102 295
Msa0134060 MtrunA17_Chr6g0460501 47.853 163 69 2 13 165 17 173 7.05e-47 153
Msa0134060 MtrunA17_Chr3g0136801 54.639 97 44 0 69 165 2 98 2.51e-33 115
Msa0134060 MtrunA17_Chr3g0120151 38.542 96 59 0 70 165 35 130 5.25e-17 77.0
Msa0134060 MtrunA17_Chr6g0460431 53.333 60 28 0 104 163 27 86 9.06e-17 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0134060 AT3G48890.1 66.827 208 61 4 1 207 6 206 5.72e-90 264
Msa0134060 AT5G52240.1 68.449 187 57 1 1 185 6 192 6.56e-87 256
Msa0134060 AT5G52240.2 73.494 166 44 0 1 166 6 171 2.91e-85 250
Msa0134060 AT2G24940.1 50.515 97 48 0 69 165 2 98 1.54e-29 106
Msa0134060 AT4G14965.1 30.921 152 82 2 14 165 9 137 7.51e-17 77.0
Msa0134060 AT4G14965.2 39.759 83 50 0 70 152 42 124 1.29e-15 72.8

Find 94 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCGTTTACTACGTCCTTTC+TGG 0.101868 1_3:+65498550 Msa0134060:CDS
ACCCTTGCTTATGGCTATTA+AGG 0.124798 1_3:+65498723 Msa0134060:CDS
CCTTTGGAAGTTGCGGGATT+GGG 0.200379 1_3:-65498605 None:intergenic
GATTTGACCGGTGATATTTC+TGG 0.252823 1_3:+65500273 Msa0134060:CDS
AGGCGATGATGGACTCCTTT+AGG 0.261253 1_3:-65498477 None:intergenic
ACCGGTGATATTTCTGGTCT+TGG 0.268409 1_3:+65500279 Msa0134060:CDS
CCCTTTGGAAGTTGCGGGAT+TGG 0.276322 1_3:-65498606 None:intergenic
GGCGATGATGGACTCCTTTA+GGG 0.276975 1_3:-65498476 None:intergenic
TACGTCCTTTCTGGTCTCTT+TGG 0.279840 1_3:+65498559 Msa0134060:CDS
AATGAATTGTGCATTGCTTT+AGG 0.287607 1_3:+65500878 Msa0134060:three_prime_UTR
CTCCTCCCTTTGGAAGTTGC+GGG 0.287895 1_3:-65498611 None:intergenic
ATTTGAGCTTGACGCGTTAC+AGG 0.301755 1_3:+65500305 Msa0134060:CDS
GGACTGGGAATACAAGTTTA+TGG 0.304869 1_3:+65500326 Msa0134060:CDS
ATTGCTTTAGGCTTTGTATA+AGG 0.316757 1_3:+65500890 Msa0134060:three_prime_UTR
GTGGATTCAGCTTCAGTAAC+TGG 0.323655 1_3:-65500381 None:intergenic
CCCTTGCTTATGGCTATTAA+GGG 0.325886 1_3:+65498724 Msa0134060:CDS
GGACCGTATGCTTTATTTGC+TGG 0.331470 1_3:+65500204 Msa0134060:CDS
AGGCTTTGTATAAGGGTTAG+AGG 0.336172 1_3:+65500898 Msa0134060:three_prime_UTR
TCATGATAAACCCTTGCTTA+TGG 0.362127 1_3:+65498714 Msa0134060:CDS
TTGCTTTAGGCTTTGTATAA+GGG 0.365443 1_3:+65500891 Msa0134060:three_prime_UTR
ATGACATTCGAGTCATATCT+TGG 0.380964 1_3:+65500759 Msa0134060:three_prime_UTR
GAAGCTCCTCCTCCTCCCTT+TGG 0.382521 1_3:-65498621 None:intergenic
AAAGCAATGCACAATTCATT+AGG 0.394703 1_3:-65500875 None:intergenic
AGCTTGACGCGTTACAGGAC+TGG 0.403993 1_3:+65500310 Msa0134060:CDS
CTTTGGAAGTTGCGGGATTG+GGG 0.404232 1_3:-65498604 None:intergenic
GTGATTTCACCTAGCTGAAC+AGG 0.406413 1_3:-65498658 None:intergenic
GACCACTTTCTTCACCATCT+TGG 0.410349 1_3:+65498516 Msa0134060:CDS
AATGTTTATTACATAAATAA+TGG 0.410929 1_3:+65500726 Msa0134060:three_prime_UTR
TGTAACGCGTCAAGCTCAAA+TGG 0.428078 1_3:-65500303 None:intergenic
AGCATTGCGTTATTCAATCA+AGG 0.430578 1_3:-65500807 None:intergenic
GTGGTGAATTGAAAATTTAG+TGG 0.436624 1_3:+65500939 Msa0134060:three_prime_UTR
GAGGAGGGAACGGAAGGGCT+TGG 0.447390 1_3:+65500917 Msa0134060:three_prime_UTR
ATCTGCCTCAACATTTGAAA+GGG 0.468489 1_3:-65500499 None:intergenic
TAGACCGGTGTAGGCGATGA+TGG 0.470054 1_3:-65498488 None:intergenic
CCTCCTCCCTTTGGAAGTTG+CGG 0.471425 1_3:-65498612 None:intergenic
ATAAGCCTTGAGCTCTTCTT+CGG 0.471949 1_3:-65498680 None:intergenic
GTTTATGGAGAAGTATGTTA+AGG 0.473963 1_3:+65500341 Msa0134060:CDS
GCAAATCAACAGTGCATAAG+TGG 0.476063 1_3:-65500621 None:intergenic
TATCTGCCTCAACATTTGAA+AGG 0.479952 1_3:-65500500 None:intergenic
GAATCCACGGGTGAACCATC+AGG 0.480454 1_3:+65500396 Msa0134060:CDS
ACCAGAAAGGACGTAGTAAA+CGG 0.488478 1_3:-65498551 None:intergenic
TTTAGTGGATTTCTTCTCCC+CGG 0.503688 1_3:+65500954 Msa0134060:three_prime_UTR
GTATGCTTTATTTGCTGGCA+AGG 0.504997 1_3:+65500209 Msa0134060:CDS
GAGGGAACGGAAGGGCTTGG+TGG 0.512880 1_3:+65500920 Msa0134060:three_prime_UTR
GGGTTAGAGGAGGGAACGGA+AGG 0.515863 1_3:+65500911 Msa0134060:three_prime_UTR
GGCAAATAGAAGAGCCAAGA+TGG 0.520312 1_3:-65498530 None:intergenic
TGACATTCGAGTCATATCTT+GGG 0.520384 1_3:+65500760 Msa0134060:three_prime_UTR
CCCAATCCCGCAACTTCCAA+AGG 0.520848 1_3:+65498605 Msa0134060:CDS
GCTTGACGCGTTACAGGACT+GGG 0.526300 1_3:+65500311 Msa0134060:CDS
GAAAGTGGTCGGAGATAGAC+CGG 0.532113 1_3:-65498503 None:intergenic
CTTTGTATAAGGGTTAGAGG+AGG 0.534001 1_3:+65500901 Msa0134060:three_prime_UTR
TCTATGATGTCTCTCAGAGC+AGG 0.537470 1_3:+65498752 Msa0134060:CDS
ATCAACAGTGCATAAGTGGC+AGG 0.540032 1_3:-65500617 None:intergenic
TTTGATCCGCCATCTTCAGT+TGG 0.541409 1_3:-65500450 None:intergenic
TCATATCTTGGGCTGAGTAG+TGG 0.544652 1_3:+65500771 Msa0134060:three_prime_UTR
GAAGAGCTCAAGGCTTATGA+TGG 0.549967 1_3:+65498685 Msa0134060:CDS
TTTGATGAGAAAGATTTGAC+CGG 0.550185 1_3:+65500261 Msa0134060:CDS
CAACTTCCAAAGGGAGGAGG+AGG 0.553586 1_3:+65498615 Msa0134060:CDS
GCTGTTAATCCAACTGAAGA+TGG 0.564157 1_3:+65500441 Msa0134060:CDS
GTAACGCGTCAAGCTCAAAT+GGG 0.568003 1_3:-65500302 None:intergenic
AGTAGCCAAAGAGACCAGAA+AGG 0.568870 1_3:-65498564 None:intergenic
CCAATCCCGCAACTTCCAAA+GGG 0.576817 1_3:+65498606 Msa0134060:CDS
TTGCCAGCAAATAAAGCATA+CGG 0.582093 1_3:-65500207 None:intergenic
ATGGAGAAGTATGTTAAGGT+CGG 0.585025 1_3:+65500345 Msa0134060:CDS
GGTCGGAGATAGACCGGTGT+AGG 0.586223 1_3:-65498497 None:intergenic
ACCCTTAATAGCCATAAGCA+AGG 0.587630 1_3:-65498725 None:intergenic
AATAAAGCATACGGTCCACC+CGG 0.588408 1_3:-65500198 None:intergenic
GGAAACCCTTTCAAATGTTG+AGG 0.589048 1_3:+65500494 Msa0134060:CDS
TTTGGAAGTTGCGGGATTGG+GGG 0.589259 1_3:-65498603 None:intergenic
GTTACTGAAGCTGAATCCAC+GGG 0.589713 1_3:+65500384 Msa0134060:CDS
CCGCAACTTCCAAAGGGAGG+AGG 0.591496 1_3:+65498612 Msa0134060:CDS
CCCTTAATAGCCATAAGCAA+GGG 0.597837 1_3:-65498724 None:intergenic
AGTTACTGAAGCTGAATCCA+CGG 0.600398 1_3:+65500383 Msa0134060:CDS
GAGTCCATCATCGCCTACAC+CGG 0.603823 1_3:+65498484 Msa0134060:CDS
TTTGTATAAGGGTTAGAGGA+GGG 0.608951 1_3:+65500902 Msa0134060:three_prime_UTR
TGAACAGGTGGTCGGAGAGG+TGG 0.609555 1_3:-65498643 None:intergenic
CACCTAGCTGAACAGGTGGT+CGG 0.610497 1_3:-65498651 None:intergenic
CTCCGACCACCTGTTCAGCT+AGG 0.610888 1_3:+65498649 Msa0134060:CDS
AGCTGAACAGGTGGTCGGAG+AGG 0.612379 1_3:-65498646 None:intergenic
ATAAGGGTTAGAGGAGGGAA+CGG 0.613157 1_3:+65500907 Msa0134060:three_prime_UTR
ACCTGCAGCTGTTAAAAGTG+AGG 0.614328 1_3:+65500473 Msa0134060:CDS
GGTTAGAGGAGGGAACGGAA+GGG 0.616314 1_3:+65500912 Msa0134060:three_prime_UTR
AGCCAAGATGGTGAAGAAAG+TGG 0.619359 1_3:-65498518 None:intergenic
AATCACCGAAGAAGAGCTCA+AGG 0.634309 1_3:+65498675 Msa0134060:CDS
ATCCCGCAACTTCCAAAGGG+AGG 0.638769 1_3:+65498609 Msa0134060:CDS
AGATCCTGATGGTTCACCCG+TGG 0.644194 1_3:-65500400 None:intergenic
AAGATGGTGAAGAAAGTGGT+CGG 0.644524 1_3:-65498514 None:intergenic
GCCAAGACCAGAAATATCAC+CGG 0.647612 1_3:-65500280 None:intergenic
TCACGAGGAGTAGATCCTGA+TGG 0.661127 1_3:-65500411 None:intergenic
TGAGTAATGAAATGTAGTGG+TGG 0.671023 1_3:+65500667 Msa0134060:three_prime_UTR
GTTAATCCAACTGAAGATGG+CGG 0.680061 1_3:+65500444 Msa0134060:CDS
ATTTCACCTAGCTGAACAGG+TGG 0.686884 1_3:-65498655 None:intergenic
TGATGAGTAATGAAATGTAG+TGG 0.702566 1_3:+65500664 Msa0134060:three_prime_UTR
TTAACAGCATCAACATCACG+AGG 0.728477 1_3:-65500426 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGTTTATTACATAAATAA+TGG + chr1_3:65500726-65500745 Msa0134060:three_prime_UTR 10.0%
!!! ACATTTTCTCAAATTATTAT+TGG + chr1_3:65499160-65499179 Msa0134060:intron 15.0%
!! AATATACACATAATACTTAA+TGG - chr1_3:65499346-65499365 None:intergenic 15.0%
!!! TTATATTCTTGTCTAAAGTT+TGG + chr1_3:65498852-65498871 Msa0134060:intron 20.0%
!!! TATATTCTTGTCTAAAGTTT+GGG + chr1_3:65498853-65498872 Msa0134060:intron 20.0%
!! AAAGTAAAGTGATTTATGTT+TGG + chr1_3:65498922-65498941 Msa0134060:intron 20.0%
!! TACACTAAGTTTATGATATA+AGG + chr1_3:65499296-65499315 Msa0134060:intron 20.0%
!!! AGAATTGATTTTAACATGTT+TGG + chr1_3:65499834-65499853 Msa0134060:intron 20.0%
!! TCTAACTTGAAGTTAAAATT+TGG + chr1_3:65499887-65499906 Msa0134060:intron 20.0%
! AAACAGAAGCTAAGAAAAAA+GGG - chr1_3:65498788-65498807 None:intergenic 25.0%
! AAAACAGAAGCTAAGAAAAA+AGG - chr1_3:65498789-65498808 None:intergenic 25.0%
! TAATTATGACTTCTGCAAAA+GGG - chr1_3:65498828-65498847 None:intergenic 25.0%
! TTAATTATGACTTCTGCAAA+AGG - chr1_3:65498829-65498848 None:intergenic 25.0%
! CAAAATTAATTATGCTCGAA+AGG + chr1_3:65499034-65499053 Msa0134060:intron 25.0%
! TCTCAAATTATTATTGGTGT+CGG + chr1_3:65499166-65499185 Msa0134060:intron 25.0%
! TCATAAACTTAGTGTATGTT+TGG - chr1_3:65499292-65499311 None:intergenic 25.0%
!!! TTTTGAAAATTATGTGTCCA+TGG + chr1_3:65499320-65499339 Msa0134060:intron 25.0%
! TATGTGTATATTTGCATGTT+TGG + chr1_3:65499354-65499373 Msa0134060:intron 25.0%
! AATAATCTGTTTATCCAAAC+AGG + chr1_3:65499612-65499631 Msa0134060:intron 25.0%
! TAAGACTTTGTATCTACTTA+GGG - chr1_3:65499638-65499657 None:intergenic 25.0%
! ATAAGACTTTGTATCTACTT+AGG - chr1_3:65499639-65499658 None:intergenic 25.0%
! AAAACAAATGAAACACCAAA+GGG - chr1_3:65499697-65499716 None:intergenic 25.0%
! AAAAACAAATGAAACACCAA+AGG - chr1_3:65499698-65499717 None:intergenic 25.0%
!!! TATGCTTTTAAGTGTATGTT+TGG + chr1_3:65499771-65499790 Msa0134060:intron 25.0%
! CTAGTCAAAATAGATTATTG+AGG + chr1_3:65499808-65499827 Msa0134060:intron 25.0%
!!! AAGTTAAAATTTGGAGCTTT+TGG + chr1_3:65499896-65499915 Msa0134060:intron 25.0%
! GAATACTTTCATACAAAAGT+GGG - chr1_3:65499961-65499980 None:intergenic 25.0%
! TGAATACTTTCATACAAAAG+TGG - chr1_3:65499962-65499981 None:intergenic 25.0%
!!! TTGATTTGTAAGATTGATTC+TGG - chr1_3:65500003-65500022 None:intergenic 25.0%
! GATCATAATAAATAGAGAGA+GGG - chr1_3:65500146-65500165 None:intergenic 25.0%
! AGATCATAATAAATAGAGAG+AGG - chr1_3:65500147-65500166 None:intergenic 25.0%
!! AATTGATTCTACCTAGCTTT+TGG - chr1_3:65499007-65499026 None:intergenic 30.0%
ATGAAACACGAATACATACA+CGG - chr1_3:65499195-65499214 None:intergenic 30.0%
! AGAATTGATTCTGACATGTT+TGG - chr1_3:65499231-65499250 None:intergenic 30.0%
CTACTAACATATATTGAGAC+TGG + chr1_3:65499397-65499416 Msa0134060:intron 30.0%
TTTGATGAGAAAGATTTGAC+CGG + chr1_3:65500261-65500280 Msa0134060:CDS 30.0%
! GTTTATGGAGAAGTATGTTA+AGG + chr1_3:65500341-65500360 Msa0134060:CDS 30.0%
AAAAACTGAGCAAAAATGTC+AGG + chr1_3:65500571-65500590 Msa0134060:three_prime_UTR 30.0%
!! CAAGTTTTCATAGTTAGTCT+AGG + chr1_3:65500594-65500613 Msa0134060:three_prime_UTR 30.0%
TGATGAGTAATGAAATGTAG+TGG + chr1_3:65500664-65500683 Msa0134060:three_prime_UTR 30.0%
AAAGCAATGCACAATTCATT+AGG - chr1_3:65500878-65500897 None:intergenic 30.0%
AATGAATTGTGCATTGCTTT+AGG + chr1_3:65500878-65500897 Msa0134060:three_prime_UTR 30.0%
! ATTGCTTTAGGCTTTGTATA+AGG + chr1_3:65500890-65500909 Msa0134060:three_prime_UTR 30.0%
! TTGCTTTAGGCTTTGTATAA+GGG + chr1_3:65500891-65500910 Msa0134060:three_prime_UTR 30.0%
GTGGTGAATTGAAAATTTAG+TGG + chr1_3:65500939-65500958 Msa0134060:three_prime_UTR 30.0%
TCATGATAAACCCTTGCTTA+TGG + chr1_3:65498714-65498733 Msa0134060:CDS 35.0%
!! CAATTCTAGAACCAAAAGCT+AGG + chr1_3:65498993-65499012 Msa0134060:intron 35.0%
CTAGGTAGAATCAATTCTTG+AGG + chr1_3:65499011-65499030 Msa0134060:intron 35.0%
! CTTCACCTCCAAATCAATTT+TGG + chr1_3:65499249-65499268 Msa0134060:intron 35.0%
CACATAATACTTAATGGCCA+TGG - chr1_3:65499340-65499359 None:intergenic 35.0%
CTTATTATGAGAAGAGCTTG+TGG + chr1_3:65499578-65499597 Msa0134060:intron 35.0%
AAGATGCGCTTATGCTTAAT+GGG - chr1_3:65499670-65499689 None:intergenic 35.0%
AAAGATGCGCTTATGCTTAA+TGG - chr1_3:65499671-65499690 None:intergenic 35.0%
TTGTTGTAATGTTGTCTGCT+TGG + chr1_3:65499716-65499735 Msa0134060:intron 35.0%
ATAGTCTAGCTGATCTAAAG+TGG - chr1_3:65499752-65499771 None:intergenic 35.0%
! TGGGTTGAACAACAAATTCA+AGG - chr1_3:65499942-65499961 None:intergenic 35.0%
!! TGTATGTGTGTTTGTTTCTG+TGG - chr1_3:65500035-65500054 None:intergenic 35.0%
CACTTCAGTTTCTTGGAAAT+TGG - chr1_3:65500087-65500106 None:intergenic 35.0%
CAATTTCCAAGAAACTGAAG+TGG + chr1_3:65500085-65500104 Msa0134060:intron 35.0%
TTGCCAGCAAATAAAGCATA+CGG - chr1_3:65500210-65500229 None:intergenic 35.0%
! ATGGAGAAGTATGTTAAGGT+CGG + chr1_3:65500345-65500364 Msa0134060:CDS 35.0%
ATCTGCCTCAACATTTGAAA+GGG - chr1_3:65500502-65500521 None:intergenic 35.0%
TATCTGCCTCAACATTTGAA+AGG - chr1_3:65500503-65500522 None:intergenic 35.0%
!!! AGTTTTTTCAGCAACTACTG+TGG - chr1_3:65500558-65500577 None:intergenic 35.0%
TGAGTAATGAAATGTAGTGG+TGG + chr1_3:65500667-65500686 Msa0134060:three_prime_UTR 35.0%
ATGACATTCGAGTCATATCT+TGG + chr1_3:65500759-65500778 Msa0134060:three_prime_UTR 35.0%
TGACATTCGAGTCATATCTT+GGG + chr1_3:65500760-65500779 Msa0134060:three_prime_UTR 35.0%
AGCATTGCGTTATTCAATCA+AGG - chr1_3:65500810-65500829 None:intergenic 35.0%
TTTGTATAAGGGTTAGAGGA+GGG + chr1_3:65500902-65500921 Msa0134060:three_prime_UTR 35.0%
AAGATGGTGAAGAAAGTGGT+CGG - chr1_3:65498517-65498536 None:intergenic 40.0%
ACCAGAAAGGACGTAGTAAA+CGG - chr1_3:65498554-65498573 None:intergenic 40.0%
ATAAGCCTTGAGCTCTTCTT+CGG - chr1_3:65498683-65498702 None:intergenic 40.0%
ACCCTTGCTTATGGCTATTA+AGG + chr1_3:65498723-65498742 Msa0134060:CDS 40.0%
CCCTTAATAGCCATAAGCAA+GGG - chr1_3:65498727-65498746 None:intergenic 40.0%
CCCTTGCTTATGGCTATTAA+GGG + chr1_3:65498724-65498743 Msa0134060:CDS 40.0%
ACCCTTAATAGCCATAAGCA+AGG - chr1_3:65498728-65498747 None:intergenic 40.0%
AGATGCGCTTATGCTTAATG+GGG - chr1_3:65499669-65499688 None:intergenic 40.0%
GATGTACCACTTCAGTTTCT+TGG - chr1_3:65500094-65500113 None:intergenic 40.0%
! ATCTGTAATTGTGTCGTTCC+AGG + chr1_3:65500163-65500182 Msa0134060:intron 40.0%
! TGTCGTTCCAGGATGTTTTA+TGG + chr1_3:65500174-65500193 Msa0134060:intron 40.0%
! TTCCAGGATGTTTTATGGAC+CGG + chr1_3:65500179-65500198 Msa0134060:intron 40.0%
!! GTATGCTTTATTTGCTGGCA+AGG + chr1_3:65500209-65500228 Msa0134060:CDS 40.0%
GATTTGACCGGTGATATTTC+TGG + chr1_3:65500273-65500292 Msa0134060:CDS 40.0%
GGACTGGGAATACAAGTTTA+TGG + chr1_3:65500326-65500345 Msa0134060:CDS 40.0%
AGTTACTGAAGCTGAATCCA+CGG + chr1_3:65500383-65500402 Msa0134060:CDS 40.0%
TTAACAGCATCAACATCACG+AGG - chr1_3:65500429-65500448 None:intergenic 40.0%
GCTGTTAATCCAACTGAAGA+TGG + chr1_3:65500441-65500460 Msa0134060:CDS 40.0%
GTTAATCCAACTGAAGATGG+CGG + chr1_3:65500444-65500463 Msa0134060:CDS 40.0%
GGAAACCCTTTCAAATGTTG+AGG + chr1_3:65500494-65500513 Msa0134060:CDS 40.0%
GCAAATCAACAGTGCATAAG+TGG - chr1_3:65500624-65500643 None:intergenic 40.0%
! AGGCTTTGTATAAGGGTTAG+AGG + chr1_3:65500898-65500917 Msa0134060:three_prime_UTR 40.0%
CTTTGTATAAGGGTTAGAGG+AGG + chr1_3:65500901-65500920 Msa0134060:three_prime_UTR 40.0%
GACCACTTTCTTCACCATCT+TGG + chr1_3:65498516-65498535 Msa0134060:CDS 45.0%
AGCCAAGATGGTGAAGAAAG+TGG - chr1_3:65498521-65498540 None:intergenic 45.0%
GGCAAATAGAAGAGCCAAGA+TGG - chr1_3:65498533-65498552 None:intergenic 45.0%
! TACGTCCTTTCTGGTCTCTT+TGG + chr1_3:65498559-65498578 Msa0134060:CDS 45.0%
AGTAGCCAAAGAGACCAGAA+AGG - chr1_3:65498567-65498586 None:intergenic 45.0%
ATTTCACCTAGCTGAACAGG+TGG - chr1_3:65498658-65498677 None:intergenic 45.0%
GTGATTTCACCTAGCTGAAC+AGG - chr1_3:65498661-65498680 None:intergenic 45.0%
AATCACCGAAGAAGAGCTCA+AGG + chr1_3:65498675-65498694 Msa0134060:CDS 45.0%
GAAGAGCTCAAGGCTTATGA+TGG + chr1_3:65498685-65498704 Msa0134060:CDS 45.0%
TCTATGATGTCTCTCAGAGC+AGG + chr1_3:65498752-65498771 Msa0134060:CDS 45.0%
! ACGAAAGCATAGACACTCCT+CGG + chr1_3:65499058-65499077 Msa0134060:intron 45.0%
!! AGGGGCCAAAATTGATTTGG+AGG - chr1_3:65499257-65499276 None:intergenic 45.0%
TGCAGGGGCCAAAATTGATT+TGG - chr1_3:65499260-65499279 None:intergenic 45.0%
! TGTTTGGTTCCACTTCTGCA+GGG - chr1_3:65499276-65499295 None:intergenic 45.0%
! ATGTTTGGTTCCACTTCTGC+AGG - chr1_3:65499277-65499296 None:intergenic 45.0%
GTATCTACTTAGGGCCTGTT+TGG - chr1_3:65499629-65499648 None:intergenic 45.0%
GATGCGCTTATGCTTAATGG+GGG - chr1_3:65499668-65499687 None:intergenic 45.0%
! AAGCGCATCTTTTGTCCCTT+TGG + chr1_3:65499679-65499698 Msa0134060:intron 45.0%
! TCCAGGATGTTTTATGGACC+GGG + chr1_3:65500180-65500199 Msa0134060:intron 45.0%
AATAAAGCATACGGTCCACC+CGG - chr1_3:65500201-65500220 None:intergenic 45.0%
!! GGACCGTATGCTTTATTTGC+TGG + chr1_3:65500204-65500223 Msa0134060:CDS 45.0%
!! ACCGGTGATATTTCTGGTCT+TGG + chr1_3:65500279-65500298 Msa0134060:CDS 45.0%
GCCAAGACCAGAAATATCAC+CGG - chr1_3:65500283-65500302 None:intergenic 45.0%
GTAACGCGTCAAGCTCAAAT+GGG - chr1_3:65500305-65500324 None:intergenic 45.0%
TGTAACGCGTCAAGCTCAAA+TGG - chr1_3:65500306-65500325 None:intergenic 45.0%
ATTTGAGCTTGACGCGTTAC+AGG + chr1_3:65500305-65500324 Msa0134060:CDS 45.0%
GTGGATTCAGCTTCAGTAAC+TGG - chr1_3:65500384-65500403 None:intergenic 45.0%
GTTACTGAAGCTGAATCCAC+GGG + chr1_3:65500384-65500403 Msa0134060:CDS 45.0%
TTTGATCCGCCATCTTCAGT+TGG - chr1_3:65500453-65500472 None:intergenic 45.0%
ACCTGCAGCTGTTAAAAGTG+AGG + chr1_3:65500473-65500492 Msa0134060:CDS 45.0%
!! TCCTCACTTTTAACAGCTGC+AGG - chr1_3:65500477-65500496 None:intergenic 45.0%
ATCAACAGTGCATAAGTGGC+AGG - chr1_3:65500620-65500639 None:intergenic 45.0%
TCATATCTTGGGCTGAGTAG+TGG + chr1_3:65500771-65500790 Msa0134060:three_prime_UTR 45.0%
ATAAGGGTTAGAGGAGGGAA+CGG + chr1_3:65500907-65500926 Msa0134060:three_prime_UTR 45.0%
!! GGCGATGATGGACTCCTTTA+GGG - chr1_3:65498479-65498498 None:intergenic 50.0%
!! AGGCGATGATGGACTCCTTT+AGG - chr1_3:65498480-65498499 None:intergenic 50.0%
GAAAGTGGTCGGAGATAGAC+CGG - chr1_3:65498506-65498525 None:intergenic 50.0%
GCCGTTTACTACGTCCTTTC+TGG + chr1_3:65498550-65498569 Msa0134060:CDS 50.0%
TTTGGAAGTTGCGGGATTGG+GGG - chr1_3:65498606-65498625 None:intergenic 50.0%
! CTTTGGAAGTTGCGGGATTG+GGG - chr1_3:65498607-65498626 None:intergenic 50.0%
! CCTTTGGAAGTTGCGGGATT+GGG - chr1_3:65498608-65498627 None:intergenic 50.0%
CCAATCCCGCAACTTCCAAA+GGG + chr1_3:65498606-65498625 Msa0134060:CDS 50.0%
ACAGCAGGACACATAATCCG+AGG - chr1_3:65499078-65499097 None:intergenic 50.0%
CGGATTATGTGTCCTGCTGT+TGG + chr1_3:65499078-65499097 Msa0134060:intron 50.0%
ACTAAGGTGTGTCCAACAGC+AGG - chr1_3:65499093-65499112 None:intergenic 50.0%
! CGTGTCGATGTCAGAGACTA+AGG - chr1_3:65499109-65499128 None:intergenic 50.0%
!! AATTTTGGCCCCTGCAGAAG+TGG + chr1_3:65499264-65499283 Msa0134060:intron 50.0%
! GTTTGGTTCCACTTCTGCAG+GGG - chr1_3:65499275-65499294 None:intergenic 50.0%
ACCCGGTCCATAAAACATCC+TGG - chr1_3:65500184-65500203 None:intergenic 50.0%
! AGGATGTTTTATGGACCGGG+TGG + chr1_3:65500183-65500202 Msa0134060:intron 50.0%
TCACGAGGAGTAGATCCTGA+TGG - chr1_3:65500414-65500433 None:intergenic 50.0%
GAGTCCATCATCGCCTACAC+CGG + chr1_3:65498484-65498503 Msa0134060:CDS 55.0%
TAGACCGGTGTAGGCGATGA+TGG - chr1_3:65498491-65498510 None:intergenic 55.0%
CCCAATCCCGCAACTTCCAA+AGG + chr1_3:65498605-65498624 Msa0134060:CDS 55.0%
! CCCTTTGGAAGTTGCGGGAT+TGG - chr1_3:65498609-65498628 None:intergenic 55.0%
ATCCCGCAACTTCCAAAGGG+AGG + chr1_3:65498609-65498628 Msa0134060:CDS 55.0%
! CTCCTCCCTTTGGAAGTTGC+GGG - chr1_3:65498614-65498633 None:intergenic 55.0%
! CCTCCTCCCTTTGGAAGTTG+CGG - chr1_3:65498615-65498634 None:intergenic 55.0%
CAACTTCCAAAGGGAGGAGG+AGG + chr1_3:65498615-65498634 Msa0134060:CDS 55.0%
CACCTAGCTGAACAGGTGGT+CGG - chr1_3:65498654-65498673 None:intergenic 55.0%
AGCTTGACGCGTTACAGGAC+TGG + chr1_3:65500310-65500329 Msa0134060:CDS 55.0%
GCTTGACGCGTTACAGGACT+GGG + chr1_3:65500311-65500330 Msa0134060:CDS 55.0%
GAATCCACGGGTGAACCATC+AGG + chr1_3:65500396-65500415 Msa0134060:CDS 55.0%
AGATCCTGATGGTTCACCCG+TGG - chr1_3:65500403-65500422 None:intergenic 55.0%
GGTTAGAGGAGGGAACGGAA+GGG + chr1_3:65500912-65500931 Msa0134060:three_prime_UTR 55.0%
GGTCGGAGATAGACCGGTGT+AGG - chr1_3:65498500-65498519 None:intergenic 60.0%
AGTTGCGGGATTGGGGGTGA+AGG - chr1_3:65498600-65498619 None:intergenic 60.0%
CCGCAACTTCCAAAGGGAGG+AGG + chr1_3:65498612-65498631 Msa0134060:CDS 60.0%
GAAGCTCCTCCTCCTCCCTT+TGG - chr1_3:65498624-65498643 None:intergenic 60.0%
TGAACAGGTGGTCGGAGAGG+TGG - chr1_3:65498646-65498665 None:intergenic 60.0%
AGCTGAACAGGTGGTCGGAG+AGG - chr1_3:65498649-65498668 None:intergenic 60.0%
CTCCGACCACCTGTTCAGCT+AGG + chr1_3:65498649-65498668 Msa0134060:CDS 60.0%
GGGTTAGAGGAGGGAACGGA+AGG + chr1_3:65500911-65500930 Msa0134060:three_prime_UTR 60.0%
GAGGAGGGAACGGAAGGGCT+TGG + chr1_3:65500917-65500936 Msa0134060:three_prime_UTR 65.0%
GAGGGAACGGAAGGGCTTGG+TGG + chr1_3:65500920-65500939 Msa0134060:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 65498469 65500975 65498469 ID=Msa0134060;Name=Msa0134060
chr1_3 mRNA 65498469 65500975 65498469 ID=Msa0134060-mRNA-1;Parent=Msa0134060;Name=Msa0134060-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|1|1|1|1|2|445|216
chr1_3 exon 65498469 65498773 65498469 ID=Msa0134060-mRNA-1:exon:22226;Parent=Msa0134060-mRNA-1
chr1_3 exon 65500185 65500975 65500185 ID=Msa0134060-mRNA-1:exon:22227;Parent=Msa0134060-mRNA-1
chr1_3 CDS 65498469 65498773 65498469 ID=Msa0134060-mRNA-1:cds;Parent=Msa0134060-mRNA-1
chr1_3 CDS 65500185 65500530 65500185 ID=Msa0134060-mRNA-1:cds;Parent=Msa0134060-mRNA-1
chr1_3 three_prime_UTR 65500531 65500975 65500531 ID=Msa0134060-mRNA-1:three_prime_utr;Parent=Msa0134060-mRNA-1
Gene Sequence

>Msa0134060

TGGGAAACCCTAAAGGAGTCCATCATCGCCTACACCGGTCTATCTCCGACCACTTTCTTCACCATCTTGGCTCTTCTATTTGCCGTTTACTACGTCCTTTCTGGTCTCTTTGGCTACTCTTCTTCTGACCTTCACCCCCAATCCCGCAACTTCCAAAGGGAGGAGGAGGAGCTTCCACCTCTCCGACCACCTGTTCAGCTAGGTGAAATCACCGAAGAAGAGCTCAAGGCTTATGATGGCAACGATCATGATAAACCCTTGCTTATGGCTATTAAGGGTCAGATCTATGATGTCTCTCAGAGCAGGATGTTTTATGGACCGGGTGGACCGTATGCTTTATTTGCTGGCAAGGATGCTAGTCGAGCATTAGCAAAGATGTCTTTTGATGAGAAAGATTTGACCGGTGATATTTCTGGTCTTGGCCCATTTGAGCTTGACGCGTTACAGGACTGGGAATACAAGTTTATGGAGAAGTATGTTAAGGTCGGAACTATTAAAAAGCCAGTTACTGAAGCTGAATCCACGGGTGAACCATCAGGATCTACTCCTCGTGATGTTGATGCTGTTAATCCAACTGAAGATGGCGGATCAAAACCTGCAGCTGTTAAAAGTGAGGAAACCCTTTCAAATGTTGAGGCAGATAAAGAGTAA

Protein sequence

>Msa0134060

WETLKESIIAYTGLSPTTFFTILALLFAVYYVLSGLFGYSSSDLHPQSRNFQREEEELPPLRPPVQLGEITEEELKAYDGNDHDKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFDEKDLTGDISGLGPFELDALQDWEYKFMEKYVKVGTIKKPVTEAESTGEPSGSTPRDVDAVNPTEDGGSKPAAVKSEETLSNVEADKE*