Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0134060 | XP_013469690.1 | 95.370 | 216 | 8 | 1 | 1 | 216 | 7 | 220 | 6.19e-146 | 415 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0134060 | sp|Q9M2Z4|MSBP2_ARATH | 66.827 | 208 | 61 | 4 | 1 | 207 | 6 | 206 | 5.63e-89 | 264 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0134060 | A0A072VQL5 | 95.370 | 216 | 8 | 1 | 1 | 216 | 7 | 220 | 2.95e-146 | 415 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0004180 | Msa0134060 | -0.816414 | 5.599525e-52 | -8.615850e-47 |
Msa0018610 | Msa0134060 | -0.822333 | 2.505403e-53 | -8.615850e-47 |
Msa0027020 | Msa0134060 | -0.810798 | 9.635489e-51 | -8.615850e-47 |
Msa0031800 | Msa0134060 | -0.801105 | 1.053594e-48 | -8.615850e-47 |
Msa0076590 | Msa0134060 | -0.808398 | 3.158106e-50 | -8.615850e-47 |
Msa0117650 | Msa0134060 | 0.800847 | 1.189317e-48 | -8.615850e-47 |
Msa0122930 | Msa0134060 | -0.800040 | 1.736300e-48 | -8.615850e-47 |
Msa0134060 | Msa0167570 | -0.813199 | 2.887887e-51 | -8.615850e-47 |
Msa0134060 | Msa0182940 | -0.802083 | 6.639241e-49 | -8.615850e-47 |
Msa0134060 | Msa0211590 | -0.802133 | 6.482723e-49 | -8.615850e-47 |
Msa0134060 | Msa0266330 | -0.801108 | 1.052000e-48 | -8.615850e-47 |
Msa0134060 | Msa0280160 | 0.811388 | 7.176953e-51 | -8.615850e-47 |
Msa0134060 | Msa0340700 | -0.802768 | 4.796817e-49 | -8.615850e-47 |
Msa0134060 | Msa0341950 | -0.802083 | 6.639241e-49 | -8.615850e-47 |
Msa0134060 | Msa0345050 | 0.804377 | 2.223935e-49 | -8.615850e-47 |
Msa0134060 | Msa0369080 | -0.805673 | 1.191426e-49 | -8.615850e-47 |
Msa0134060 | Msa0380470 | -0.805519 | 1.283674e-49 | -8.615850e-47 |
Msa0134060 | Msa0382050 | -0.824454 | 8.000265e-54 | -8.615850e-47 |
Msa0134060 | Msa0397420 | -0.805166 | 1.522181e-49 | -8.615850e-47 |
Msa0134060 | Msa0405200 | 0.801112 | 1.050130e-48 | -8.615850e-47 |
Msa0134060 | Msa0436660 | -0.804669 | 1.933373e-49 | -8.615850e-47 |
Msa0134060 | Msa0437820 | -0.805382 | 1.371177e-49 | -8.615850e-47 |
Msa0134060 | Msa0444770 | -0.814345 | 1.615546e-51 | -8.615850e-47 |
Msa0134060 | Msa0461150 | -0.801094 | 1.058885e-48 | -8.615850e-47 |
Msa0134060 | Msa0492330 | -0.822774 | 1.978465e-53 | -8.615850e-47 |
Msa0134060 | Msa0500580 | -0.809827 | 1.560647e-50 | -8.615850e-47 |
Msa0134060 | Msa0506700 | -0.811484 | 6.840025e-51 | -8.615850e-47 |
Msa0134060 | Msa0517260 | 0.804739 | 1.869186e-49 | -8.615850e-47 |
Msa0134060 | Msa0549700 | -0.801039 | 1.086771e-48 | -8.615850e-47 |
Msa0134060 | Msa0597370 | -0.805779 | 1.132009e-49 | -8.615850e-47 |
Msa0134060 | Msa0606350 | -0.821384 | 4.155511e-53 | -8.615850e-47 |
Msa0134060 | Msa0616570 | -0.804106 | 2.533393e-49 | -8.615850e-47 |
Msa0134060 | Msa0637590 | 0.807295 | 5.418857e-50 | -8.615850e-47 |
Msa0134060 | Msa0673620 | -0.802984 | 4.327174e-49 | -8.615850e-47 |
Msa0134060 | Msa0679220 | 0.815069 | 1.116317e-51 | -8.615850e-47 |
Msa0134060 | Msa0699900 | -0.802317 | 5.942222e-49 | -8.615850e-47 |
Msa0134060 | Msa0739820 | -0.820634 | 6.184258e-53 | -8.615850e-47 |
Msa0134060 | Msa0751510 | 0.802080 | 6.647164e-49 | -8.615850e-47 |
Msa0134060 | Msa0755550 | -0.802651 | 5.071373e-49 | -8.615850e-47 |
Msa0134060 | Msa0766910 | -0.804283 | 2.327013e-49 | -8.615850e-47 |
Msa0134060 | Msa0784780 | -0.807264 | 5.501564e-50 | -8.615850e-47 |
Msa0134060 | Msa0802600 | 0.801796 | 7.604622e-49 | -8.615850e-47 |
Msa0134060 | Msa0829250 | -0.810617 | 1.054611e-50 | -8.615850e-47 |
Msa0134060 | Msa0829990 | 0.812035 | 5.191475e-51 | -8.615850e-47 |
Msa0134060 | Msa0858250 | -0.810622 | 1.051741e-50 | -8.615850e-47 |
Msa0134060 | Msa0868500 | -0.808744 | 2.664549e-50 | -8.615850e-47 |
Msa0134060 | Msa0868510 | -0.808197 | 3.485544e-50 | -8.615850e-47 |
Msa0134060 | Msa0882480 | -0.833415 | 5.403436e-56 | -8.615850e-47 |
Msa0134060 | Msa0925940 | 0.808092 | 3.669941e-50 | -8.615850e-47 |
Msa0134060 | Msa0958960 | -0.810338 | 1.211156e-50 | -8.615850e-47 |
Msa0134060 | Msa0978540 | -0.804090 | 2.552150e-49 | -8.615850e-47 |
Msa0134060 | Msa0978550 | -0.805404 | 1.357082e-49 | -8.615850e-47 |
Msa0134060 | Msa1031190 | -0.806124 | 9.578214e-50 | -8.615850e-47 |
Msa0134060 | Msa1058550 | -0.815946 | 7.124296e-52 | -8.615850e-47 |
Msa0134060 | Msa1070370 | -0.804754 | 1.855968e-49 | -8.615850e-47 |
Msa0134060 | Msa1119420 | -0.802836 | 4.644191e-49 | -8.615850e-47 |
Msa0134060 | Msa1129510 | -0.813092 | 3.048389e-51 | -8.615850e-47 |
Msa0134060 | Msa1156100 | -0.814752 | 1.312714e-51 | -8.615850e-47 |
Msa0134060 | Msa1158180 | -0.805717 | 1.166303e-49 | -8.615850e-47 |
Msa0134060 | Msa1203320 | -0.802147 | 6.440324e-49 | -8.615850e-47 |
Msa0134060 | Msa1228260 | -0.800336 | 1.511978e-48 | -8.615850e-47 |
Msa0134060 | Msa1235620 | -0.801263 | 9.779653e-49 | -8.615850e-47 |
Msa0134060 | Msa1251440 | -0.800808 | 1.211322e-48 | -8.615850e-47 |
Msa0134060 | Msa1254870 | 0.800232 | 1.587212e-48 | -8.615850e-47 |
Msa0134060 | Msa1266750 | -0.801356 | 9.360397e-49 | -8.615850e-47 |
Msa0134060 | Msa1271220 | -0.800304 | 1.534459e-48 | -8.615850e-47 |
Msa0134060 | Msa1303690 | -0.813883 | 2.042793e-51 | -8.615850e-47 |
Msa0134060 | Msa1325560 | -0.803323 | 3.682202e-49 | -8.615850e-47 |
Msa0134060 | Msa1328430 | 0.800385 | 1.477683e-48 | -8.615850e-47 |
Msa0134060 | Msa1328680 | -0.806179 | 9.326039e-50 | -8.615850e-47 |
Msa0134060 | Msa1348180 | -0.810905 | 9.134903e-51 | -8.615850e-47 |
Msa0134060 | Msa1350590 | -0.803744 | 3.012190e-49 | -8.615850e-47 |
Msa0134060 | Msa1363170 | -0.813640 | 2.310784e-51 | -8.615850e-47 |
Msa0134060 | Msa1439000 | -0.804394 | 2.206184e-49 | -8.615850e-47 |
Msa0134060 | Msa1462700 | -0.805061 | 1.600815e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0134060 | MtrunA17_Chr1g0203511 | 95.370 | 216 | 8 | 1 | 1 | 216 | 41 | 254 | 5.84e-150 | 416 |
Msa0134060 | MtrunA17_Chr6g0470661 | 67.532 | 231 | 58 | 4 | 1 | 216 | 6 | 234 | 2.51e-102 | 295 |
Msa0134060 | MtrunA17_Chr6g0460501 | 47.853 | 163 | 69 | 2 | 13 | 165 | 17 | 173 | 7.05e-47 | 153 |
Msa0134060 | MtrunA17_Chr3g0136801 | 54.639 | 97 | 44 | 0 | 69 | 165 | 2 | 98 | 2.51e-33 | 115 |
Msa0134060 | MtrunA17_Chr3g0120151 | 38.542 | 96 | 59 | 0 | 70 | 165 | 35 | 130 | 5.25e-17 | 77.0 |
Msa0134060 | MtrunA17_Chr6g0460431 | 53.333 | 60 | 28 | 0 | 104 | 163 | 27 | 86 | 9.06e-17 | 72.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0134060 | AT3G48890.1 | 66.827 | 208 | 61 | 4 | 1 | 207 | 6 | 206 | 5.72e-90 | 264 |
Msa0134060 | AT5G52240.1 | 68.449 | 187 | 57 | 1 | 1 | 185 | 6 | 192 | 6.56e-87 | 256 |
Msa0134060 | AT5G52240.2 | 73.494 | 166 | 44 | 0 | 1 | 166 | 6 | 171 | 2.91e-85 | 250 |
Msa0134060 | AT2G24940.1 | 50.515 | 97 | 48 | 0 | 69 | 165 | 2 | 98 | 1.54e-29 | 106 |
Msa0134060 | AT4G14965.1 | 30.921 | 152 | 82 | 2 | 14 | 165 | 9 | 137 | 7.51e-17 | 77.0 |
Msa0134060 | AT4G14965.2 | 39.759 | 83 | 50 | 0 | 70 | 152 | 42 | 124 | 1.29e-15 | 72.8 |
Find 94 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCCGTTTACTACGTCCTTTC+TGG | 0.101868 | 1_3:+65498550 | Msa0134060:CDS |
ACCCTTGCTTATGGCTATTA+AGG | 0.124798 | 1_3:+65498723 | Msa0134060:CDS |
CCTTTGGAAGTTGCGGGATT+GGG | 0.200379 | 1_3:-65498605 | None:intergenic |
GATTTGACCGGTGATATTTC+TGG | 0.252823 | 1_3:+65500273 | Msa0134060:CDS |
AGGCGATGATGGACTCCTTT+AGG | 0.261253 | 1_3:-65498477 | None:intergenic |
ACCGGTGATATTTCTGGTCT+TGG | 0.268409 | 1_3:+65500279 | Msa0134060:CDS |
CCCTTTGGAAGTTGCGGGAT+TGG | 0.276322 | 1_3:-65498606 | None:intergenic |
GGCGATGATGGACTCCTTTA+GGG | 0.276975 | 1_3:-65498476 | None:intergenic |
TACGTCCTTTCTGGTCTCTT+TGG | 0.279840 | 1_3:+65498559 | Msa0134060:CDS |
AATGAATTGTGCATTGCTTT+AGG | 0.287607 | 1_3:+65500878 | Msa0134060:three_prime_UTR |
CTCCTCCCTTTGGAAGTTGC+GGG | 0.287895 | 1_3:-65498611 | None:intergenic |
ATTTGAGCTTGACGCGTTAC+AGG | 0.301755 | 1_3:+65500305 | Msa0134060:CDS |
GGACTGGGAATACAAGTTTA+TGG | 0.304869 | 1_3:+65500326 | Msa0134060:CDS |
ATTGCTTTAGGCTTTGTATA+AGG | 0.316757 | 1_3:+65500890 | Msa0134060:three_prime_UTR |
GTGGATTCAGCTTCAGTAAC+TGG | 0.323655 | 1_3:-65500381 | None:intergenic |
CCCTTGCTTATGGCTATTAA+GGG | 0.325886 | 1_3:+65498724 | Msa0134060:CDS |
GGACCGTATGCTTTATTTGC+TGG | 0.331470 | 1_3:+65500204 | Msa0134060:CDS |
AGGCTTTGTATAAGGGTTAG+AGG | 0.336172 | 1_3:+65500898 | Msa0134060:three_prime_UTR |
TCATGATAAACCCTTGCTTA+TGG | 0.362127 | 1_3:+65498714 | Msa0134060:CDS |
TTGCTTTAGGCTTTGTATAA+GGG | 0.365443 | 1_3:+65500891 | Msa0134060:three_prime_UTR |
ATGACATTCGAGTCATATCT+TGG | 0.380964 | 1_3:+65500759 | Msa0134060:three_prime_UTR |
GAAGCTCCTCCTCCTCCCTT+TGG | 0.382521 | 1_3:-65498621 | None:intergenic |
AAAGCAATGCACAATTCATT+AGG | 0.394703 | 1_3:-65500875 | None:intergenic |
AGCTTGACGCGTTACAGGAC+TGG | 0.403993 | 1_3:+65500310 | Msa0134060:CDS |
CTTTGGAAGTTGCGGGATTG+GGG | 0.404232 | 1_3:-65498604 | None:intergenic |
GTGATTTCACCTAGCTGAAC+AGG | 0.406413 | 1_3:-65498658 | None:intergenic |
GACCACTTTCTTCACCATCT+TGG | 0.410349 | 1_3:+65498516 | Msa0134060:CDS |
AATGTTTATTACATAAATAA+TGG | 0.410929 | 1_3:+65500726 | Msa0134060:three_prime_UTR |
TGTAACGCGTCAAGCTCAAA+TGG | 0.428078 | 1_3:-65500303 | None:intergenic |
AGCATTGCGTTATTCAATCA+AGG | 0.430578 | 1_3:-65500807 | None:intergenic |
GTGGTGAATTGAAAATTTAG+TGG | 0.436624 | 1_3:+65500939 | Msa0134060:three_prime_UTR |
GAGGAGGGAACGGAAGGGCT+TGG | 0.447390 | 1_3:+65500917 | Msa0134060:three_prime_UTR |
ATCTGCCTCAACATTTGAAA+GGG | 0.468489 | 1_3:-65500499 | None:intergenic |
TAGACCGGTGTAGGCGATGA+TGG | 0.470054 | 1_3:-65498488 | None:intergenic |
CCTCCTCCCTTTGGAAGTTG+CGG | 0.471425 | 1_3:-65498612 | None:intergenic |
ATAAGCCTTGAGCTCTTCTT+CGG | 0.471949 | 1_3:-65498680 | None:intergenic |
GTTTATGGAGAAGTATGTTA+AGG | 0.473963 | 1_3:+65500341 | Msa0134060:CDS |
GCAAATCAACAGTGCATAAG+TGG | 0.476063 | 1_3:-65500621 | None:intergenic |
TATCTGCCTCAACATTTGAA+AGG | 0.479952 | 1_3:-65500500 | None:intergenic |
GAATCCACGGGTGAACCATC+AGG | 0.480454 | 1_3:+65500396 | Msa0134060:CDS |
ACCAGAAAGGACGTAGTAAA+CGG | 0.488478 | 1_3:-65498551 | None:intergenic |
TTTAGTGGATTTCTTCTCCC+CGG | 0.503688 | 1_3:+65500954 | Msa0134060:three_prime_UTR |
GTATGCTTTATTTGCTGGCA+AGG | 0.504997 | 1_3:+65500209 | Msa0134060:CDS |
GAGGGAACGGAAGGGCTTGG+TGG | 0.512880 | 1_3:+65500920 | Msa0134060:three_prime_UTR |
GGGTTAGAGGAGGGAACGGA+AGG | 0.515863 | 1_3:+65500911 | Msa0134060:three_prime_UTR |
GGCAAATAGAAGAGCCAAGA+TGG | 0.520312 | 1_3:-65498530 | None:intergenic |
TGACATTCGAGTCATATCTT+GGG | 0.520384 | 1_3:+65500760 | Msa0134060:three_prime_UTR |
CCCAATCCCGCAACTTCCAA+AGG | 0.520848 | 1_3:+65498605 | Msa0134060:CDS |
GCTTGACGCGTTACAGGACT+GGG | 0.526300 | 1_3:+65500311 | Msa0134060:CDS |
GAAAGTGGTCGGAGATAGAC+CGG | 0.532113 | 1_3:-65498503 | None:intergenic |
CTTTGTATAAGGGTTAGAGG+AGG | 0.534001 | 1_3:+65500901 | Msa0134060:three_prime_UTR |
TCTATGATGTCTCTCAGAGC+AGG | 0.537470 | 1_3:+65498752 | Msa0134060:CDS |
ATCAACAGTGCATAAGTGGC+AGG | 0.540032 | 1_3:-65500617 | None:intergenic |
TTTGATCCGCCATCTTCAGT+TGG | 0.541409 | 1_3:-65500450 | None:intergenic |
TCATATCTTGGGCTGAGTAG+TGG | 0.544652 | 1_3:+65500771 | Msa0134060:three_prime_UTR |
GAAGAGCTCAAGGCTTATGA+TGG | 0.549967 | 1_3:+65498685 | Msa0134060:CDS |
TTTGATGAGAAAGATTTGAC+CGG | 0.550185 | 1_3:+65500261 | Msa0134060:CDS |
CAACTTCCAAAGGGAGGAGG+AGG | 0.553586 | 1_3:+65498615 | Msa0134060:CDS |
GCTGTTAATCCAACTGAAGA+TGG | 0.564157 | 1_3:+65500441 | Msa0134060:CDS |
GTAACGCGTCAAGCTCAAAT+GGG | 0.568003 | 1_3:-65500302 | None:intergenic |
AGTAGCCAAAGAGACCAGAA+AGG | 0.568870 | 1_3:-65498564 | None:intergenic |
CCAATCCCGCAACTTCCAAA+GGG | 0.576817 | 1_3:+65498606 | Msa0134060:CDS |
TTGCCAGCAAATAAAGCATA+CGG | 0.582093 | 1_3:-65500207 | None:intergenic |
ATGGAGAAGTATGTTAAGGT+CGG | 0.585025 | 1_3:+65500345 | Msa0134060:CDS |
GGTCGGAGATAGACCGGTGT+AGG | 0.586223 | 1_3:-65498497 | None:intergenic |
ACCCTTAATAGCCATAAGCA+AGG | 0.587630 | 1_3:-65498725 | None:intergenic |
AATAAAGCATACGGTCCACC+CGG | 0.588408 | 1_3:-65500198 | None:intergenic |
GGAAACCCTTTCAAATGTTG+AGG | 0.589048 | 1_3:+65500494 | Msa0134060:CDS |
TTTGGAAGTTGCGGGATTGG+GGG | 0.589259 | 1_3:-65498603 | None:intergenic |
GTTACTGAAGCTGAATCCAC+GGG | 0.589713 | 1_3:+65500384 | Msa0134060:CDS |
CCGCAACTTCCAAAGGGAGG+AGG | 0.591496 | 1_3:+65498612 | Msa0134060:CDS |
CCCTTAATAGCCATAAGCAA+GGG | 0.597837 | 1_3:-65498724 | None:intergenic |
AGTTACTGAAGCTGAATCCA+CGG | 0.600398 | 1_3:+65500383 | Msa0134060:CDS |
GAGTCCATCATCGCCTACAC+CGG | 0.603823 | 1_3:+65498484 | Msa0134060:CDS |
TTTGTATAAGGGTTAGAGGA+GGG | 0.608951 | 1_3:+65500902 | Msa0134060:three_prime_UTR |
TGAACAGGTGGTCGGAGAGG+TGG | 0.609555 | 1_3:-65498643 | None:intergenic |
CACCTAGCTGAACAGGTGGT+CGG | 0.610497 | 1_3:-65498651 | None:intergenic |
CTCCGACCACCTGTTCAGCT+AGG | 0.610888 | 1_3:+65498649 | Msa0134060:CDS |
AGCTGAACAGGTGGTCGGAG+AGG | 0.612379 | 1_3:-65498646 | None:intergenic |
ATAAGGGTTAGAGGAGGGAA+CGG | 0.613157 | 1_3:+65500907 | Msa0134060:three_prime_UTR |
ACCTGCAGCTGTTAAAAGTG+AGG | 0.614328 | 1_3:+65500473 | Msa0134060:CDS |
GGTTAGAGGAGGGAACGGAA+GGG | 0.616314 | 1_3:+65500912 | Msa0134060:three_prime_UTR |
AGCCAAGATGGTGAAGAAAG+TGG | 0.619359 | 1_3:-65498518 | None:intergenic |
AATCACCGAAGAAGAGCTCA+AGG | 0.634309 | 1_3:+65498675 | Msa0134060:CDS |
ATCCCGCAACTTCCAAAGGG+AGG | 0.638769 | 1_3:+65498609 | Msa0134060:CDS |
AGATCCTGATGGTTCACCCG+TGG | 0.644194 | 1_3:-65500400 | None:intergenic |
AAGATGGTGAAGAAAGTGGT+CGG | 0.644524 | 1_3:-65498514 | None:intergenic |
GCCAAGACCAGAAATATCAC+CGG | 0.647612 | 1_3:-65500280 | None:intergenic |
TCACGAGGAGTAGATCCTGA+TGG | 0.661127 | 1_3:-65500411 | None:intergenic |
TGAGTAATGAAATGTAGTGG+TGG | 0.671023 | 1_3:+65500667 | Msa0134060:three_prime_UTR |
GTTAATCCAACTGAAGATGG+CGG | 0.680061 | 1_3:+65500444 | Msa0134060:CDS |
ATTTCACCTAGCTGAACAGG+TGG | 0.686884 | 1_3:-65498655 | None:intergenic |
TGATGAGTAATGAAATGTAG+TGG | 0.702566 | 1_3:+65500664 | Msa0134060:three_prime_UTR |
TTAACAGCATCAACATCACG+AGG | 0.728477 | 1_3:-65500426 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATGTTTATTACATAAATAA+TGG | + | chr1_3:65500726-65500745 | Msa0134060:three_prime_UTR | 10.0% |
!!! | ACATTTTCTCAAATTATTAT+TGG | + | chr1_3:65499160-65499179 | Msa0134060:intron | 15.0% |
!! | AATATACACATAATACTTAA+TGG | - | chr1_3:65499346-65499365 | None:intergenic | 15.0% |
!!! | TTATATTCTTGTCTAAAGTT+TGG | + | chr1_3:65498852-65498871 | Msa0134060:intron | 20.0% |
!!! | TATATTCTTGTCTAAAGTTT+GGG | + | chr1_3:65498853-65498872 | Msa0134060:intron | 20.0% |
!! | AAAGTAAAGTGATTTATGTT+TGG | + | chr1_3:65498922-65498941 | Msa0134060:intron | 20.0% |
!! | TACACTAAGTTTATGATATA+AGG | + | chr1_3:65499296-65499315 | Msa0134060:intron | 20.0% |
!!! | AGAATTGATTTTAACATGTT+TGG | + | chr1_3:65499834-65499853 | Msa0134060:intron | 20.0% |
!! | TCTAACTTGAAGTTAAAATT+TGG | + | chr1_3:65499887-65499906 | Msa0134060:intron | 20.0% |
! | AAACAGAAGCTAAGAAAAAA+GGG | - | chr1_3:65498788-65498807 | None:intergenic | 25.0% |
! | AAAACAGAAGCTAAGAAAAA+AGG | - | chr1_3:65498789-65498808 | None:intergenic | 25.0% |
! | TAATTATGACTTCTGCAAAA+GGG | - | chr1_3:65498828-65498847 | None:intergenic | 25.0% |
! | TTAATTATGACTTCTGCAAA+AGG | - | chr1_3:65498829-65498848 | None:intergenic | 25.0% |
! | CAAAATTAATTATGCTCGAA+AGG | + | chr1_3:65499034-65499053 | Msa0134060:intron | 25.0% |
! | TCTCAAATTATTATTGGTGT+CGG | + | chr1_3:65499166-65499185 | Msa0134060:intron | 25.0% |
! | TCATAAACTTAGTGTATGTT+TGG | - | chr1_3:65499292-65499311 | None:intergenic | 25.0% |
!!! | TTTTGAAAATTATGTGTCCA+TGG | + | chr1_3:65499320-65499339 | Msa0134060:intron | 25.0% |
! | TATGTGTATATTTGCATGTT+TGG | + | chr1_3:65499354-65499373 | Msa0134060:intron | 25.0% |
! | AATAATCTGTTTATCCAAAC+AGG | + | chr1_3:65499612-65499631 | Msa0134060:intron | 25.0% |
! | TAAGACTTTGTATCTACTTA+GGG | - | chr1_3:65499638-65499657 | None:intergenic | 25.0% |
! | ATAAGACTTTGTATCTACTT+AGG | - | chr1_3:65499639-65499658 | None:intergenic | 25.0% |
! | AAAACAAATGAAACACCAAA+GGG | - | chr1_3:65499697-65499716 | None:intergenic | 25.0% |
! | AAAAACAAATGAAACACCAA+AGG | - | chr1_3:65499698-65499717 | None:intergenic | 25.0% |
!!! | TATGCTTTTAAGTGTATGTT+TGG | + | chr1_3:65499771-65499790 | Msa0134060:intron | 25.0% |
! | CTAGTCAAAATAGATTATTG+AGG | + | chr1_3:65499808-65499827 | Msa0134060:intron | 25.0% |
!!! | AAGTTAAAATTTGGAGCTTT+TGG | + | chr1_3:65499896-65499915 | Msa0134060:intron | 25.0% |
! | GAATACTTTCATACAAAAGT+GGG | - | chr1_3:65499961-65499980 | None:intergenic | 25.0% |
! | TGAATACTTTCATACAAAAG+TGG | - | chr1_3:65499962-65499981 | None:intergenic | 25.0% |
!!! | TTGATTTGTAAGATTGATTC+TGG | - | chr1_3:65500003-65500022 | None:intergenic | 25.0% |
! | GATCATAATAAATAGAGAGA+GGG | - | chr1_3:65500146-65500165 | None:intergenic | 25.0% |
! | AGATCATAATAAATAGAGAG+AGG | - | chr1_3:65500147-65500166 | None:intergenic | 25.0% |
!! | AATTGATTCTACCTAGCTTT+TGG | - | chr1_3:65499007-65499026 | None:intergenic | 30.0% |
ATGAAACACGAATACATACA+CGG | - | chr1_3:65499195-65499214 | None:intergenic | 30.0% | |
! | AGAATTGATTCTGACATGTT+TGG | - | chr1_3:65499231-65499250 | None:intergenic | 30.0% |
CTACTAACATATATTGAGAC+TGG | + | chr1_3:65499397-65499416 | Msa0134060:intron | 30.0% | |
TTTGATGAGAAAGATTTGAC+CGG | + | chr1_3:65500261-65500280 | Msa0134060:CDS | 30.0% | |
! | GTTTATGGAGAAGTATGTTA+AGG | + | chr1_3:65500341-65500360 | Msa0134060:CDS | 30.0% |
AAAAACTGAGCAAAAATGTC+AGG | + | chr1_3:65500571-65500590 | Msa0134060:three_prime_UTR | 30.0% | |
!! | CAAGTTTTCATAGTTAGTCT+AGG | + | chr1_3:65500594-65500613 | Msa0134060:three_prime_UTR | 30.0% |
TGATGAGTAATGAAATGTAG+TGG | + | chr1_3:65500664-65500683 | Msa0134060:three_prime_UTR | 30.0% | |
AAAGCAATGCACAATTCATT+AGG | - | chr1_3:65500878-65500897 | None:intergenic | 30.0% | |
AATGAATTGTGCATTGCTTT+AGG | + | chr1_3:65500878-65500897 | Msa0134060:three_prime_UTR | 30.0% | |
! | ATTGCTTTAGGCTTTGTATA+AGG | + | chr1_3:65500890-65500909 | Msa0134060:three_prime_UTR | 30.0% |
! | TTGCTTTAGGCTTTGTATAA+GGG | + | chr1_3:65500891-65500910 | Msa0134060:three_prime_UTR | 30.0% |
GTGGTGAATTGAAAATTTAG+TGG | + | chr1_3:65500939-65500958 | Msa0134060:three_prime_UTR | 30.0% | |
TCATGATAAACCCTTGCTTA+TGG | + | chr1_3:65498714-65498733 | Msa0134060:CDS | 35.0% | |
!! | CAATTCTAGAACCAAAAGCT+AGG | + | chr1_3:65498993-65499012 | Msa0134060:intron | 35.0% |
CTAGGTAGAATCAATTCTTG+AGG | + | chr1_3:65499011-65499030 | Msa0134060:intron | 35.0% | |
! | CTTCACCTCCAAATCAATTT+TGG | + | chr1_3:65499249-65499268 | Msa0134060:intron | 35.0% |
CACATAATACTTAATGGCCA+TGG | - | chr1_3:65499340-65499359 | None:intergenic | 35.0% | |
CTTATTATGAGAAGAGCTTG+TGG | + | chr1_3:65499578-65499597 | Msa0134060:intron | 35.0% | |
AAGATGCGCTTATGCTTAAT+GGG | - | chr1_3:65499670-65499689 | None:intergenic | 35.0% | |
AAAGATGCGCTTATGCTTAA+TGG | - | chr1_3:65499671-65499690 | None:intergenic | 35.0% | |
TTGTTGTAATGTTGTCTGCT+TGG | + | chr1_3:65499716-65499735 | Msa0134060:intron | 35.0% | |
ATAGTCTAGCTGATCTAAAG+TGG | - | chr1_3:65499752-65499771 | None:intergenic | 35.0% | |
! | TGGGTTGAACAACAAATTCA+AGG | - | chr1_3:65499942-65499961 | None:intergenic | 35.0% |
!! | TGTATGTGTGTTTGTTTCTG+TGG | - | chr1_3:65500035-65500054 | None:intergenic | 35.0% |
CACTTCAGTTTCTTGGAAAT+TGG | - | chr1_3:65500087-65500106 | None:intergenic | 35.0% | |
CAATTTCCAAGAAACTGAAG+TGG | + | chr1_3:65500085-65500104 | Msa0134060:intron | 35.0% | |
TTGCCAGCAAATAAAGCATA+CGG | - | chr1_3:65500210-65500229 | None:intergenic | 35.0% | |
! | ATGGAGAAGTATGTTAAGGT+CGG | + | chr1_3:65500345-65500364 | Msa0134060:CDS | 35.0% |
ATCTGCCTCAACATTTGAAA+GGG | - | chr1_3:65500502-65500521 | None:intergenic | 35.0% | |
TATCTGCCTCAACATTTGAA+AGG | - | chr1_3:65500503-65500522 | None:intergenic | 35.0% | |
!!! | AGTTTTTTCAGCAACTACTG+TGG | - | chr1_3:65500558-65500577 | None:intergenic | 35.0% |
TGAGTAATGAAATGTAGTGG+TGG | + | chr1_3:65500667-65500686 | Msa0134060:three_prime_UTR | 35.0% | |
ATGACATTCGAGTCATATCT+TGG | + | chr1_3:65500759-65500778 | Msa0134060:three_prime_UTR | 35.0% | |
TGACATTCGAGTCATATCTT+GGG | + | chr1_3:65500760-65500779 | Msa0134060:three_prime_UTR | 35.0% | |
AGCATTGCGTTATTCAATCA+AGG | - | chr1_3:65500810-65500829 | None:intergenic | 35.0% | |
TTTGTATAAGGGTTAGAGGA+GGG | + | chr1_3:65500902-65500921 | Msa0134060:three_prime_UTR | 35.0% | |
AAGATGGTGAAGAAAGTGGT+CGG | - | chr1_3:65498517-65498536 | None:intergenic | 40.0% | |
ACCAGAAAGGACGTAGTAAA+CGG | - | chr1_3:65498554-65498573 | None:intergenic | 40.0% | |
ATAAGCCTTGAGCTCTTCTT+CGG | - | chr1_3:65498683-65498702 | None:intergenic | 40.0% | |
ACCCTTGCTTATGGCTATTA+AGG | + | chr1_3:65498723-65498742 | Msa0134060:CDS | 40.0% | |
CCCTTAATAGCCATAAGCAA+GGG | - | chr1_3:65498727-65498746 | None:intergenic | 40.0% | |
CCCTTGCTTATGGCTATTAA+GGG | + | chr1_3:65498724-65498743 | Msa0134060:CDS | 40.0% | |
ACCCTTAATAGCCATAAGCA+AGG | - | chr1_3:65498728-65498747 | None:intergenic | 40.0% | |
AGATGCGCTTATGCTTAATG+GGG | - | chr1_3:65499669-65499688 | None:intergenic | 40.0% | |
GATGTACCACTTCAGTTTCT+TGG | - | chr1_3:65500094-65500113 | None:intergenic | 40.0% | |
! | ATCTGTAATTGTGTCGTTCC+AGG | + | chr1_3:65500163-65500182 | Msa0134060:intron | 40.0% |
! | TGTCGTTCCAGGATGTTTTA+TGG | + | chr1_3:65500174-65500193 | Msa0134060:intron | 40.0% |
! | TTCCAGGATGTTTTATGGAC+CGG | + | chr1_3:65500179-65500198 | Msa0134060:intron | 40.0% |
!! | GTATGCTTTATTTGCTGGCA+AGG | + | chr1_3:65500209-65500228 | Msa0134060:CDS | 40.0% |
GATTTGACCGGTGATATTTC+TGG | + | chr1_3:65500273-65500292 | Msa0134060:CDS | 40.0% | |
GGACTGGGAATACAAGTTTA+TGG | + | chr1_3:65500326-65500345 | Msa0134060:CDS | 40.0% | |
AGTTACTGAAGCTGAATCCA+CGG | + | chr1_3:65500383-65500402 | Msa0134060:CDS | 40.0% | |
TTAACAGCATCAACATCACG+AGG | - | chr1_3:65500429-65500448 | None:intergenic | 40.0% | |
GCTGTTAATCCAACTGAAGA+TGG | + | chr1_3:65500441-65500460 | Msa0134060:CDS | 40.0% | |
GTTAATCCAACTGAAGATGG+CGG | + | chr1_3:65500444-65500463 | Msa0134060:CDS | 40.0% | |
GGAAACCCTTTCAAATGTTG+AGG | + | chr1_3:65500494-65500513 | Msa0134060:CDS | 40.0% | |
GCAAATCAACAGTGCATAAG+TGG | - | chr1_3:65500624-65500643 | None:intergenic | 40.0% | |
! | AGGCTTTGTATAAGGGTTAG+AGG | + | chr1_3:65500898-65500917 | Msa0134060:three_prime_UTR | 40.0% |
CTTTGTATAAGGGTTAGAGG+AGG | + | chr1_3:65500901-65500920 | Msa0134060:three_prime_UTR | 40.0% | |
GACCACTTTCTTCACCATCT+TGG | + | chr1_3:65498516-65498535 | Msa0134060:CDS | 45.0% | |
AGCCAAGATGGTGAAGAAAG+TGG | - | chr1_3:65498521-65498540 | None:intergenic | 45.0% | |
GGCAAATAGAAGAGCCAAGA+TGG | - | chr1_3:65498533-65498552 | None:intergenic | 45.0% | |
! | TACGTCCTTTCTGGTCTCTT+TGG | + | chr1_3:65498559-65498578 | Msa0134060:CDS | 45.0% |
AGTAGCCAAAGAGACCAGAA+AGG | - | chr1_3:65498567-65498586 | None:intergenic | 45.0% | |
ATTTCACCTAGCTGAACAGG+TGG | - | chr1_3:65498658-65498677 | None:intergenic | 45.0% | |
GTGATTTCACCTAGCTGAAC+AGG | - | chr1_3:65498661-65498680 | None:intergenic | 45.0% | |
AATCACCGAAGAAGAGCTCA+AGG | + | chr1_3:65498675-65498694 | Msa0134060:CDS | 45.0% | |
GAAGAGCTCAAGGCTTATGA+TGG | + | chr1_3:65498685-65498704 | Msa0134060:CDS | 45.0% | |
TCTATGATGTCTCTCAGAGC+AGG | + | chr1_3:65498752-65498771 | Msa0134060:CDS | 45.0% | |
! | ACGAAAGCATAGACACTCCT+CGG | + | chr1_3:65499058-65499077 | Msa0134060:intron | 45.0% |
!! | AGGGGCCAAAATTGATTTGG+AGG | - | chr1_3:65499257-65499276 | None:intergenic | 45.0% |
TGCAGGGGCCAAAATTGATT+TGG | - | chr1_3:65499260-65499279 | None:intergenic | 45.0% | |
! | TGTTTGGTTCCACTTCTGCA+GGG | - | chr1_3:65499276-65499295 | None:intergenic | 45.0% |
! | ATGTTTGGTTCCACTTCTGC+AGG | - | chr1_3:65499277-65499296 | None:intergenic | 45.0% |
GTATCTACTTAGGGCCTGTT+TGG | - | chr1_3:65499629-65499648 | None:intergenic | 45.0% | |
GATGCGCTTATGCTTAATGG+GGG | - | chr1_3:65499668-65499687 | None:intergenic | 45.0% | |
! | AAGCGCATCTTTTGTCCCTT+TGG | + | chr1_3:65499679-65499698 | Msa0134060:intron | 45.0% |
! | TCCAGGATGTTTTATGGACC+GGG | + | chr1_3:65500180-65500199 | Msa0134060:intron | 45.0% |
AATAAAGCATACGGTCCACC+CGG | - | chr1_3:65500201-65500220 | None:intergenic | 45.0% | |
!! | GGACCGTATGCTTTATTTGC+TGG | + | chr1_3:65500204-65500223 | Msa0134060:CDS | 45.0% |
!! | ACCGGTGATATTTCTGGTCT+TGG | + | chr1_3:65500279-65500298 | Msa0134060:CDS | 45.0% |
GCCAAGACCAGAAATATCAC+CGG | - | chr1_3:65500283-65500302 | None:intergenic | 45.0% | |
GTAACGCGTCAAGCTCAAAT+GGG | - | chr1_3:65500305-65500324 | None:intergenic | 45.0% | |
TGTAACGCGTCAAGCTCAAA+TGG | - | chr1_3:65500306-65500325 | None:intergenic | 45.0% | |
ATTTGAGCTTGACGCGTTAC+AGG | + | chr1_3:65500305-65500324 | Msa0134060:CDS | 45.0% | |
GTGGATTCAGCTTCAGTAAC+TGG | - | chr1_3:65500384-65500403 | None:intergenic | 45.0% | |
GTTACTGAAGCTGAATCCAC+GGG | + | chr1_3:65500384-65500403 | Msa0134060:CDS | 45.0% | |
TTTGATCCGCCATCTTCAGT+TGG | - | chr1_3:65500453-65500472 | None:intergenic | 45.0% | |
ACCTGCAGCTGTTAAAAGTG+AGG | + | chr1_3:65500473-65500492 | Msa0134060:CDS | 45.0% | |
!! | TCCTCACTTTTAACAGCTGC+AGG | - | chr1_3:65500477-65500496 | None:intergenic | 45.0% |
ATCAACAGTGCATAAGTGGC+AGG | - | chr1_3:65500620-65500639 | None:intergenic | 45.0% | |
TCATATCTTGGGCTGAGTAG+TGG | + | chr1_3:65500771-65500790 | Msa0134060:three_prime_UTR | 45.0% | |
ATAAGGGTTAGAGGAGGGAA+CGG | + | chr1_3:65500907-65500926 | Msa0134060:three_prime_UTR | 45.0% | |
!! | GGCGATGATGGACTCCTTTA+GGG | - | chr1_3:65498479-65498498 | None:intergenic | 50.0% |
!! | AGGCGATGATGGACTCCTTT+AGG | - | chr1_3:65498480-65498499 | None:intergenic | 50.0% |
GAAAGTGGTCGGAGATAGAC+CGG | - | chr1_3:65498506-65498525 | None:intergenic | 50.0% | |
GCCGTTTACTACGTCCTTTC+TGG | + | chr1_3:65498550-65498569 | Msa0134060:CDS | 50.0% | |
TTTGGAAGTTGCGGGATTGG+GGG | - | chr1_3:65498606-65498625 | None:intergenic | 50.0% | |
! | CTTTGGAAGTTGCGGGATTG+GGG | - | chr1_3:65498607-65498626 | None:intergenic | 50.0% |
! | CCTTTGGAAGTTGCGGGATT+GGG | - | chr1_3:65498608-65498627 | None:intergenic | 50.0% |
CCAATCCCGCAACTTCCAAA+GGG | + | chr1_3:65498606-65498625 | Msa0134060:CDS | 50.0% | |
ACAGCAGGACACATAATCCG+AGG | - | chr1_3:65499078-65499097 | None:intergenic | 50.0% | |
CGGATTATGTGTCCTGCTGT+TGG | + | chr1_3:65499078-65499097 | Msa0134060:intron | 50.0% | |
ACTAAGGTGTGTCCAACAGC+AGG | - | chr1_3:65499093-65499112 | None:intergenic | 50.0% | |
! | CGTGTCGATGTCAGAGACTA+AGG | - | chr1_3:65499109-65499128 | None:intergenic | 50.0% |
!! | AATTTTGGCCCCTGCAGAAG+TGG | + | chr1_3:65499264-65499283 | Msa0134060:intron | 50.0% |
! | GTTTGGTTCCACTTCTGCAG+GGG | - | chr1_3:65499275-65499294 | None:intergenic | 50.0% |
ACCCGGTCCATAAAACATCC+TGG | - | chr1_3:65500184-65500203 | None:intergenic | 50.0% | |
! | AGGATGTTTTATGGACCGGG+TGG | + | chr1_3:65500183-65500202 | Msa0134060:intron | 50.0% |
TCACGAGGAGTAGATCCTGA+TGG | - | chr1_3:65500414-65500433 | None:intergenic | 50.0% | |
GAGTCCATCATCGCCTACAC+CGG | + | chr1_3:65498484-65498503 | Msa0134060:CDS | 55.0% | |
TAGACCGGTGTAGGCGATGA+TGG | - | chr1_3:65498491-65498510 | None:intergenic | 55.0% | |
CCCAATCCCGCAACTTCCAA+AGG | + | chr1_3:65498605-65498624 | Msa0134060:CDS | 55.0% | |
! | CCCTTTGGAAGTTGCGGGAT+TGG | - | chr1_3:65498609-65498628 | None:intergenic | 55.0% |
ATCCCGCAACTTCCAAAGGG+AGG | + | chr1_3:65498609-65498628 | Msa0134060:CDS | 55.0% | |
! | CTCCTCCCTTTGGAAGTTGC+GGG | - | chr1_3:65498614-65498633 | None:intergenic | 55.0% |
! | CCTCCTCCCTTTGGAAGTTG+CGG | - | chr1_3:65498615-65498634 | None:intergenic | 55.0% |
CAACTTCCAAAGGGAGGAGG+AGG | + | chr1_3:65498615-65498634 | Msa0134060:CDS | 55.0% | |
CACCTAGCTGAACAGGTGGT+CGG | - | chr1_3:65498654-65498673 | None:intergenic | 55.0% | |
AGCTTGACGCGTTACAGGAC+TGG | + | chr1_3:65500310-65500329 | Msa0134060:CDS | 55.0% | |
GCTTGACGCGTTACAGGACT+GGG | + | chr1_3:65500311-65500330 | Msa0134060:CDS | 55.0% | |
GAATCCACGGGTGAACCATC+AGG | + | chr1_3:65500396-65500415 | Msa0134060:CDS | 55.0% | |
AGATCCTGATGGTTCACCCG+TGG | - | chr1_3:65500403-65500422 | None:intergenic | 55.0% | |
GGTTAGAGGAGGGAACGGAA+GGG | + | chr1_3:65500912-65500931 | Msa0134060:three_prime_UTR | 55.0% | |
GGTCGGAGATAGACCGGTGT+AGG | - | chr1_3:65498500-65498519 | None:intergenic | 60.0% | |
AGTTGCGGGATTGGGGGTGA+AGG | - | chr1_3:65498600-65498619 | None:intergenic | 60.0% | |
CCGCAACTTCCAAAGGGAGG+AGG | + | chr1_3:65498612-65498631 | Msa0134060:CDS | 60.0% | |
GAAGCTCCTCCTCCTCCCTT+TGG | - | chr1_3:65498624-65498643 | None:intergenic | 60.0% | |
TGAACAGGTGGTCGGAGAGG+TGG | - | chr1_3:65498646-65498665 | None:intergenic | 60.0% | |
AGCTGAACAGGTGGTCGGAG+AGG | - | chr1_3:65498649-65498668 | None:intergenic | 60.0% | |
CTCCGACCACCTGTTCAGCT+AGG | + | chr1_3:65498649-65498668 | Msa0134060:CDS | 60.0% | |
GGGTTAGAGGAGGGAACGGA+AGG | + | chr1_3:65500911-65500930 | Msa0134060:three_prime_UTR | 60.0% | |
GAGGAGGGAACGGAAGGGCT+TGG | + | chr1_3:65500917-65500936 | Msa0134060:three_prime_UTR | 65.0% | |
GAGGGAACGGAAGGGCTTGG+TGG | + | chr1_3:65500920-65500939 | Msa0134060:three_prime_UTR | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_3 | gene | 65498469 | 65500975 | 65498469 | ID=Msa0134060;Name=Msa0134060 |
chr1_3 | mRNA | 65498469 | 65500975 | 65498469 | ID=Msa0134060-mRNA-1;Parent=Msa0134060;Name=Msa0134060-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|1|1|1|1|2|445|216 |
chr1_3 | exon | 65498469 | 65498773 | 65498469 | ID=Msa0134060-mRNA-1:exon:22226;Parent=Msa0134060-mRNA-1 |
chr1_3 | exon | 65500185 | 65500975 | 65500185 | ID=Msa0134060-mRNA-1:exon:22227;Parent=Msa0134060-mRNA-1 |
chr1_3 | CDS | 65498469 | 65498773 | 65498469 | ID=Msa0134060-mRNA-1:cds;Parent=Msa0134060-mRNA-1 |
chr1_3 | CDS | 65500185 | 65500530 | 65500185 | ID=Msa0134060-mRNA-1:cds;Parent=Msa0134060-mRNA-1 |
chr1_3 | three_prime_UTR | 65500531 | 65500975 | 65500531 | ID=Msa0134060-mRNA-1:three_prime_utr;Parent=Msa0134060-mRNA-1 |
Gene Sequence |
Protein sequence |