AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0369080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0369080 MtrunA17_Chr3g0113101 99.742 387 1 0 1 387 1 387 0.0 792
Msa0369080 MtrunA17_Chr2g0278581 31.915 282 167 10 116 379 67 341 3.42e-23 99.4
Msa0369080 MtrunA17_Chr7g0241071 28.720 289 171 9 115 371 125 410 3.75e-20 91.3
Msa0369080 MtrunA17_Chr6g0463901 28.253 269 165 8 116 364 67 327 1.55e-18 85.9
Msa0369080 MtrunA17_Chr4g0049821 26.761 284 167 14 120 378 124 391 1.19e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0369080 AT3G55800.1 79.949 394 71 3 1 387 1 393 0.0 647
Msa0369080 AT1G43670.1 31.061 264 164 5 116 364 67 327 1.52e-22 97.8
Msa0369080 AT5G64380.1 25.786 318 183 14 86 368 90 389 1.38e-14 75.1

Find 128 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGTCTAGCACAGATTTA+TGG 0.166276 3_1:+66196991 None:intergenic
TTGAAATCAAGCTCTTTATT+TGG 0.186892 3_1:-66199442 Msa0369080:CDS
ATTTAGTTCTAGTCATAAAT+AGG 0.198228 3_1:+66196742 None:intergenic
ACACAATGTGTTAACTCTTT+TGG 0.201562 3_1:-66199049 Msa0369080:CDS
GTAAATTCCGAATTGCTTAA+TGG 0.211059 3_1:+66196665 None:intergenic
TCACTCCCTCTTCTGCCTTC+AGG 0.230507 3_1:-66199637 Msa0369080:CDS
CTTGTATTATGGTATGTATT+TGG 0.252537 3_1:+66196616 None:intergenic
TTAATGGAAGGAAGCCTTAA+TGG 0.260905 3_1:+66196681 None:intergenic
CAATTCATATTTCAGGAAAA+TGG 0.261597 3_1:-66197567 Msa0369080:intron
GTCATAACCAAATGCGAAAT+TGG 0.262915 3_1:-66199358 Msa0369080:CDS
CACTTATGTACTTGCACTTA+AGG 0.290701 3_1:-66197900 Msa0369080:CDS
GATAGAACTCAAGTTGCTTA+TGG 0.316106 3_1:-66196951 Msa0369080:CDS
ATCTAAGCATCTAGCCATTA+AGG 0.319389 3_1:-66196695 Msa0369080:three_prime_UTR
GTCAAAGAGACTCATGAAAT+TGG 0.322823 3_1:-66197538 Msa0369080:CDS
CACTCCCTCTTCTGCCTTCA+GGG 0.336824 3_1:-66199636 Msa0369080:intron
TTCACAGTAGGCACCATCTT+TGG 0.339734 3_1:-66198004 Msa0369080:CDS
GTTGCATTTGACCCTCTTGA+TGG 0.343626 3_1:-66198049 Msa0369080:CDS
GATCAAAGAATGAGGTCATT+AGG 0.344384 3_1:-66196929 Msa0369080:CDS
ACTGTCGCCAATTTCGCATT+TGG 0.348976 3_1:+66199351 None:intergenic
GCAAGTACATAAGTGGTTCT+AGG 0.350687 3_1:+66197908 None:intergenic
TTGTTTGAGGTAGCTCCATT+AGG 0.352175 3_1:-66197053 Msa0369080:CDS
AATGTGGCTCTCAAATTTCC+AGG 0.356367 3_1:+66197496 None:intergenic
GAATTTACACAGGTTGAGTT+TGG 0.359303 3_1:-66196650 Msa0369080:three_prime_UTR
TTTAGTTCTAGTCATAAATA+GGG 0.364278 3_1:+66196743 None:intergenic
AGAGGGAGTGATGGAGGGTA+GGG 0.378558 3_1:+66199649 None:intergenic
CTCAACTTGGCTTTGGCAGT+TGG 0.380041 3_1:+66197080 None:intergenic
AATGTAGACCTTAGCATAAT+CGG 0.386240 3_1:+66197465 None:intergenic
AAGAGGGAGTGATGGAGGGT+AGG 0.386970 3_1:+66199648 None:intergenic
CTTCCTTCCATTAAGCAATT+CGG 0.389996 3_1:-66196672 Msa0369080:three_prime_UTR
CAGATTATTGTAAAAGAAAA+GGG 0.391090 3_1:-66197125 Msa0369080:CDS
GCAGATTATTGTAAAAGAAA+AGG 0.393674 3_1:-66197126 Msa0369080:intron
CCTCCCATGTCTTGAAGCTC+AGG 0.399582 3_1:+66198199 None:intergenic
GATAAGTTGATTGGAGTAAC+AGG 0.403692 3_1:-66197968 Msa0369080:CDS
GATGGAGGGTAGGGAGTGTT+TGG 0.409911 3_1:+66199658 None:intergenic
AGTTACAAACTAGCAAATAT+TGG 0.411486 3_1:-66199992 Msa0369080:five_prime_UTR
AAATATAATTTATGTTCAAA+TGG 0.412027 3_1:-66196723 Msa0369080:three_prime_UTR
GGCAGAAGAGGGAGTGATGG+AGG 0.413966 3_1:+66199643 None:intergenic
AATTATGACATACCATCAAC+TGG 0.427130 3_1:+66198175 None:intergenic
ATGCGAAATTGGCGACAGTT+TGG 0.435500 3_1:-66199347 Msa0369080:intron
CAACAGTCTCAACTTGGCTT+TGG 0.442108 3_1:+66197073 None:intergenic
TAAGGGACTGATTAGGTTGA+TGG 0.455534 3_1:-66199134 Msa0369080:CDS
AGATCAAGTTGCTGCAGCTA+TGG 0.458553 3_1:-66197942 Msa0369080:CDS
AGGTTTGAAGAAACATTGTA+TGG 0.459432 3_1:-66196909 Msa0369080:CDS
GTCAAAGGCGACACCGGATA+AGG 0.461477 3_1:-66199152 Msa0369080:CDS
GACATGGGAGGTCCAGTTGA+TGG 0.468525 3_1:-66198187 Msa0369080:intron
GTCTTGTATAGGAAGAGATA+TGG 0.469412 3_1:+66199952 None:intergenic
TCAAAGGCGACACCGGATAA+GGG 0.472586 3_1:-66199151 Msa0369080:CDS
AACCTAATCAGTCCCTTATC+CGG 0.476945 3_1:+66199139 None:intergenic
GCAGAAGTGAGAGTGTTTCA+AGG 0.477074 3_1:+66198246 None:intergenic
GAATTTCTACTTCTTGATGA+AGG 0.478553 3_1:-66197860 Msa0369080:intron
GAAGGCAGAAGAGGGAGTGA+TGG 0.480102 3_1:+66199640 None:intergenic
TTGCATCACAAATATTTATG+TGG 0.480738 3_1:+66199919 None:intergenic
GCTTAAGCACTTGCTCCAAC+AGG 0.481475 3_1:+66196861 None:intergenic
GGACTCTTGATTGAAAATGC+TGG 0.481565 3_1:-66197032 Msa0369080:CDS
AGTAGAAATTCATGAGTGCC+GGG 0.495020 3_1:+66197872 None:intergenic
AAGTAGAAATTCATGAGTGC+CGG 0.495327 3_1:+66197871 None:intergenic
CTCAAACAACAGTCTCAACT+TGG 0.497480 3_1:+66197067 None:intergenic
TAGGCACCATCTTTGGTGTA+TGG 0.505757 3_1:-66197997 Msa0369080:CDS
CTTAAGTGCAAGTACATAAG+TGG 0.510456 3_1:+66197901 None:intergenic
AAAAGAACCTGGTTAACATC+TGG 0.513565 3_1:+66197301 None:intergenic
CAAGTACATAAGTGGTTCTA+GGG 0.517611 3_1:+66197909 None:intergenic
GATCAAGTTGCTGCAGCTAT+GGG 0.517665 3_1:-66197941 Msa0369080:CDS
ACCATCTTTGGTGTATGGCC+TGG 0.525808 3_1:-66197992 Msa0369080:CDS
CACCGGATAAGGGACTGATT+AGG 0.526285 3_1:-66199141 Msa0369080:CDS
CAAGTTGAGACTGTTGTTTG+AGG 0.526367 3_1:-66197066 Msa0369080:CDS
TGGCCTGGTGATAAGTTGAT+TGG 0.529285 3_1:-66197977 Msa0369080:CDS
ACCAGGCCATACACCAAAGA+TGG 0.537327 3_1:+66197991 None:intergenic
GCAGAAGAGGGAGTGATGGA+GGG 0.545840 3_1:+66199644 None:intergenic
AAAATTTCAAAATGAAATGT+CGG 0.548151 3_1:+66196832 None:intergenic
GTAGGAAGAATTCTTGTCAA+AGG 0.549312 3_1:-66199167 Msa0369080:intron
GATTAGGTTGATGGTGTGCA+TGG 0.550231 3_1:-66199125 Msa0369080:CDS
ATGGCTAGATGCTTAGATGT+TGG 0.551826 3_1:+66196700 None:intergenic
ATATTTATGTGGTTGTGCTA+TGG 0.554917 3_1:+66199930 None:intergenic
CTCAAGGGTGGTGTACCTGT+TGG 0.557393 3_1:-66196876 Msa0369080:CDS
CTTGCACTTAAGGACTTCCC+CGG 0.558366 3_1:-66197890 Msa0369080:CDS
ATTCCGAATTGCTTAATGGA+AGG 0.558767 3_1:+66196669 None:intergenic
GAAGGAAAACTATTCTCCCC+TGG 0.564395 3_1:-66197514 Msa0369080:CDS
GCAACTTGCAGTGGATATGC+TGG 0.564658 3_1:-66199020 Msa0369080:CDS
AAACATTGTATGGTTCATCA+AGG 0.565959 3_1:-66196899 Msa0369080:CDS
GTATGGTTCATCAAGGCTCA+AGG 0.566669 3_1:-66196892 Msa0369080:CDS
GTTGTGCTATGGTCTTGTAT+AGG 0.567533 3_1:+66199941 None:intergenic
AATCCCTGAGCTTCAAGACA+TGG 0.568565 3_1:-66198203 Msa0369080:CDS
AAATACACATTGAGATACAC+TGG 0.570416 3_1:-66197334 Msa0369080:CDS
GCTGGAGGTTACAGCAGTGA+TGG 0.571612 3_1:-66197014 Msa0369080:CDS
ATTGAGATACACTGGAGGAA+TGG 0.574840 3_1:-66197326 Msa0369080:CDS
CCATAAATCTGTGCTAGACA+AGG 0.577457 3_1:-66196991 Msa0369080:CDS
ACATGCTATACTAGTTTCCA+TGG 0.581877 3_1:+66199715 None:intergenic
GTGGCATGTGATGAATAGAT+AGG 0.582573 3_1:+66199864 None:intergenic
TGACAACGCCGATTATGCTA+AGG 0.583304 3_1:-66197473 Msa0369080:intron
TTGTATAGGAAGAGATATGG+TGG 0.585414 3_1:+66199955 None:intergenic
GTAGACACAAATTTCACAGT+AGG 0.585426 3_1:-66198016 Msa0369080:CDS
TGGGGATGAGCAACTTGCAG+TGG 0.586212 3_1:-66199029 Msa0369080:CDS
ATCCCTGAGCTTCAAGACAT+GGG 0.586854 3_1:-66198202 Msa0369080:CDS
ATTCTTGTCAAAGGCGACAC+CGG 0.589868 3_1:-66199158 Msa0369080:CDS
ACTACGAAGAAAAGCACCAC+TGG 0.593568 3_1:+66199688 None:intergenic
CTCCCATGTCTTGAAGCTCA+GGG 0.593677 3_1:+66198200 None:intergenic
GTGAAGACAGCTTCTTGTGG+TGG 0.596604 3_1:-66199073 Msa0369080:CDS
ATATAGCAATTATAGATATG+TGG 0.597775 3_1:+66199819 None:intergenic
CATACCCTGAAGGCAGAAGA+GGG 0.598076 3_1:+66199632 None:intergenic
GAGACTCATGAAATTGGTGA+AGG 0.599892 3_1:-66197532 Msa0369080:CDS
TGTATAGGAAGAGATATGGT+GGG 0.601117 3_1:+66199956 None:intergenic
GCATACCCTGAAGGCAGAAG+AGG 0.607473 3_1:+66199631 None:intergenic
TATGGTTCATCAAGGCTCAA+GGG 0.610673 3_1:-66196891 Msa0369080:CDS
CTCTTGATTGAAAATGCTGG+AGG 0.611258 3_1:-66197029 Msa0369080:CDS
ATGTGGCTCTCAAATTTCCA+GGG 0.611538 3_1:+66197497 None:intergenic
AAGCAATTCGGAATTTACAC+AGG 0.613950 3_1:-66196660 Msa0369080:three_prime_UTR
ATAATCGGCGTTGTCAAATG+TGG 0.622416 3_1:+66197480 None:intergenic
TGCTTATGGATCAAAGAATG+AGG 0.624161 3_1:-66196937 Msa0369080:CDS
TATTACTGTGCATACCCTGA+AGG 0.625695 3_1:+66199622 None:intergenic
AATGGTGCCAGATGTTAACC+AGG 0.627894 3_1:-66197308 Msa0369080:intron
GTATAGGAAGAGATATGGTG+GGG 0.629809 3_1:+66199957 None:intergenic
ACTCCAATCAACTTATCACC+AGG 0.643314 3_1:+66197974 None:intergenic
AGTATAGCATGTTACTCCAG+TGG 0.647366 3_1:-66199704 Msa0369080:CDS
ACTATGCTTGAACCATCAAG+AGG 0.650576 3_1:+66198037 None:intergenic
TATAGGAAGAGATATGGTGG+GGG 0.657342 3_1:+66199958 None:intergenic
TCTATTCATCACATGCCACA+TGG 0.658867 3_1:-66199860 Msa0369080:five_prime_UTR
ATTAGGTTGATGGTGTGCAT+GGG 0.661036 3_1:-66199124 Msa0369080:CDS
AAAGTGAAGACAGCTTCTTG+TGG 0.674964 3_1:-66199076 Msa0369080:CDS
GTATGTATTTGGACTACACA+TGG 0.677028 3_1:+66196627 None:intergenic
CTATGCTTGAACCATCAAGA+GGG 0.684004 3_1:+66198038 None:intergenic
GGTTCATCAAGGCTCAAGGG+TGG 0.686247 3_1:-66196888 Msa0369080:CDS
ATAGGAAGAGATATGGTGGG+GGG 0.687951 3_1:+66199959 None:intergenic
TAGGAAGAGATATGGTGGGG+GGG 0.691506 3_1:+66199960 None:intergenic
GTAGAAATTCATGAGTGCCG+GGG 0.695072 3_1:+66197873 None:intergenic
CCTGAGCTTCAAGACATGGG+AGG 0.706034 3_1:-66198199 Msa0369080:CDS
TGTGGCTCTCAAATTTCCAG+GGG 0.715588 3_1:+66197498 None:intergenic
TACACATTGAGATACACTGG+AGG 0.730905 3_1:-66197331 Msa0369080:CDS
ATTATGCATGTAGTGCCATG+TGG 0.745934 3_1:+66199845 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTCAATGATTAATTTAT+TGG - chr3_1:66197028-66197047 Msa0369080:CDS 10.0%
!! AAACAATTAAAATTTATGAA+AGG - chr3_1:66198002-66198021 Msa0369080:CDS 10.0%
!! ATGAAATAAAGAAAAAAAAA+AGG + chr3_1:66198098-66198117 None:intergenic 10.0%
!!! GATGAATATTTTATAAAATA+TGG - chr3_1:66199437-66199456 Msa0369080:CDS 10.0%
!! AAATATAATTTATGTTCAAA+TGG - chr3_1:66199887-66199906 Msa0369080:five_prime_UTR 10.0%
!! AGAGAAAATAAAATTTAACA+AGG + chr3_1:66197961-66197980 None:intergenic 15.0%
!!! TTTCTTTATTTCATAATAGT+AGG - chr3_1:66198104-66198123 Msa0369080:intron 15.0%
!! AGATTTATGAGATTATAATA+AGG - chr3_1:66198789-66198808 Msa0369080:intron 15.0%
!! AAAATTTCAAAATGAAATGT+CGG + chr3_1:66199781-66199800 None:intergenic 15.0%
!! TTTAAAAACTTCTTGTATTA+TGG + chr3_1:66200008-66200027 None:intergenic 15.0%
!! ATATAGCAATTATAGATATG+TGG + chr3_1:66196794-66196813 None:intergenic 20.0%
!! AATAAAATTTAACAAGGAAG+TGG + chr3_1:66197955-66197974 None:intergenic 20.0%
!!! TGTTTCTATAAATGAACTTT+AGG + chr3_1:66197987-66198006 None:intergenic 20.0%
!!! CAATATTTTTAGTGATAGTT+TGG + chr3_1:66198464-66198483 None:intergenic 20.0%
!!! ATATATAATTTTTGAGCGTA+TGG - chr3_1:66198500-66198519 Msa0369080:intron 20.0%
!!! TTTTGTCATATGATAAATCT+TGG + chr3_1:66199018-66199037 None:intergenic 20.0%
!! AATTATCCAATTCATATTTC+AGG - chr3_1:66199036-66199055 Msa0369080:CDS 20.0%
!! CAGATTATTGTAAAAGAAAA+GGG - chr3_1:66199485-66199504 Msa0369080:intron 20.0%
!!! TTTAGTTCTAGTCATAAATA+GGG + chr3_1:66199870-66199889 None:intergenic 20.0%
!!! ATTTAGTTCTAGTCATAAAT+AGG + chr3_1:66199871-66199890 None:intergenic 20.0%
! AGTTACAAACTAGCAAATAT+TGG - chr3_1:66196618-66196637 Msa0369080:three_prime_UTR 25.0%
! TTGCATCACAAATATTTATG+TGG + chr3_1:66196694-66196713 None:intergenic 25.0%
!!! TATGTTGAAAAGTTTTGATG+AGG + chr3_1:66196861-66196880 None:intergenic 25.0%
!!! ATAATTTTTTTTTGCAGCCA+TGG - chr3_1:66196878-66196897 Msa0369080:CDS 25.0%
! TTGAAATCAAGCTCTTTATT+TGG - chr3_1:66197168-66197187 Msa0369080:intron 25.0%
!! AATCAACACTTAAGTTTTCA+AGG - chr3_1:66197214-66197233 Msa0369080:intron 25.0%
!! ATCAACACTTAAGTTTTCAA+GGG - chr3_1:66197215-66197234 Msa0369080:intron 25.0%
!! AAACTGTTTTCATAAGCTAA+TGG + chr3_1:66197398-66197417 None:intergenic 25.0%
! TGTTGATGTTTGTATATTGT+AGG - chr3_1:66197425-66197444 Msa0369080:intron 25.0%
! ACTAATCTATGTGCATAAAT+TGG + chr3_1:66197675-66197694 None:intergenic 25.0%
!!! AAACATGTTTTGTTATGATG+AGG - chr3_1:66198025-66198044 Msa0369080:CDS 25.0%
!! GATATTGCATTTTATATGCA+GGG - chr3_1:66198175-66198194 Msa0369080:intron 25.0%
!! ATATTGCATTTTATATGCAG+GGG - chr3_1:66198176-66198195 Msa0369080:intron 25.0%
! TAATTGTGGAGATTTAATTG+TGG + chr3_1:66198233-66198252 None:intergenic 25.0%
!! CTATAGTACTTTTGAATTGA+AGG - chr3_1:66198935-66198954 Msa0369080:intron 25.0%
!! CATTTTCCTGAAATATGAAT+TGG + chr3_1:66199045-66199064 None:intergenic 25.0%
! CAATTCATATTTCAGGAAAA+TGG - chr3_1:66199043-66199062 Msa0369080:CDS 25.0%
!! AGTGAAGTAATTTTGTATGA+AGG + chr3_1:66199368-66199387 None:intergenic 25.0%
! GCAGATTATTGTAAAAGAAA+AGG - chr3_1:66199484-66199503 Msa0369080:intron 25.0%
! CTTGTATTATGGTATGTATT+TGG + chr3_1:66199997-66200016 None:intergenic 25.0%
ATATTTATGTGGTTGTGCTA+TGG + chr3_1:66196683-66196702 None:intergenic 30.0%
! GCTAATGAAACTGTATTTTG+AGG + chr3_1:66196727-66196746 None:intergenic 30.0%
TGCATTGAAAAAAAGAGAGT+GGG + chr3_1:66196823-66196842 None:intergenic 30.0%
TTGCATTGAAAAAAAGAGAG+TGG + chr3_1:66196824-66196843 None:intergenic 30.0%
! ACACAATGTGTTAACTCTTT+TGG - chr3_1:66197561-66197580 Msa0369080:intron 30.0%
! CACAATGTGTTAACTCTTTT+GGG - chr3_1:66197562-66197581 Msa0369080:intron 30.0%
! ACAATGTGTTAACTCTTTTG+GGG - chr3_1:66197563-66197582 Msa0369080:intron 30.0%
!! TTATGCACATAGATTAGTCT+TGG - chr3_1:66197677-66197696 Msa0369080:intron 30.0%
AAAGCCACATATTCATGTTA+TGG + chr3_1:66197724-66197743 None:intergenic 30.0%
! GGATATTGCATTTTATATGC+AGG - chr3_1:66198174-66198193 Msa0369080:intron 30.0%
AATTATGACATACCATCAAC+TGG + chr3_1:66198438-66198457 None:intergenic 30.0%
TCATAATATACGCATCTAAC+AGG - chr3_1:66198528-66198547 Msa0369080:intron 30.0%
GAATTTCTACTTCTTGATGA+AGG - chr3_1:66198750-66198769 Msa0369080:intron 30.0%
!!! GATTTCCTCGAACATTTTTT+CGG + chr3_1:66198876-66198895 None:intergenic 30.0%
! GTACTGTTGCTTAATTCAAA+GGG + chr3_1:66198916-66198935 None:intergenic 30.0%
! AGTACTGTTGCTTAATTCAA+AGG + chr3_1:66198917-66198936 None:intergenic 30.0%
AATGTAGACCTTAGCATAAT+CGG + chr3_1:66199148-66199167 None:intergenic 30.0%
!! TTCGTTTTTCATCGATTAGT+TGG - chr3_1:66199233-66199252 Msa0369080:intron 30.0%
AAATACACATTGAGATACAC+TGG - chr3_1:66199276-66199295 Msa0369080:intron 30.0%
! TTTTCAATCAAGAGTCCTAA+TGG + chr3_1:66199575-66199594 None:intergenic 30.0%
AGGTTTGAAGAAACATTGTA+TGG - chr3_1:66199701-66199720 Msa0369080:CDS 30.0%
AAACATTGTATGGTTCATCA+AGG - chr3_1:66199711-66199730 Msa0369080:CDS 30.0%
GTAAATTCCGAATTGCTTAA+TGG + chr3_1:66199948-66199967 None:intergenic 30.0%
TGTATAGGAAGAGATATGGT+GGG + chr3_1:66196657-66196676 None:intergenic 35.0%
TTGTATAGGAAGAGATATGG+TGG + chr3_1:66196658-66196677 None:intergenic 35.0%
GTCTTGTATAGGAAGAGATA+TGG + chr3_1:66196661-66196680 None:intergenic 35.0%
GAAAAAAAGAGAGTGGGAAT+GGG + chr3_1:66196817-66196836 None:intergenic 35.0%
TGAAAAAAAGAGAGTGGGAA+TGG + chr3_1:66196818-66196837 None:intergenic 35.0%
! ACATGCTATACTAGTTTCCA+TGG + chr3_1:66196898-66196917 None:intergenic 35.0%
GTCATAACCAAATGCGAAAT+TGG - chr3_1:66197252-66197271 Msa0369080:intron 35.0%
GTAGGAAGAATTCTTGTCAA+AGG - chr3_1:66197443-66197462 Msa0369080:intron 35.0%
! GGCTAACAATCTTCTTTTTG+AGG - chr3_1:66197611-66197630 Msa0369080:intron 35.0%
ATGTTATGGATCCAATGTCT+AGG + chr3_1:66197710-66197729 None:intergenic 35.0%
GGATCCATAACATGAATATG+TGG - chr3_1:66197717-66197736 Msa0369080:intron 35.0%
! TGAATATGTGGCTTTTATGC+AGG - chr3_1:66197729-66197748 Msa0369080:intron 35.0%
AGTTCTTGTAGGAATCTCAT+TGG + chr3_1:66197799-66197818 None:intergenic 35.0%
GAGATTTAATTGTGGAGAAG+TGG + chr3_1:66198225-66198244 None:intergenic 35.0%
GAGCTCACACAATTTAATTG+TGG + chr3_1:66198247-66198266 None:intergenic 35.0%
TAATATACGCATCTAACAGG+AGG - chr3_1:66198531-66198550 Msa0369080:intron 35.0%
GTAGACACAAATTTCACAGT+AGG - chr3_1:66198594-66198613 Msa0369080:intron 35.0%
!! GATAAGTTGATTGGAGTAAC+AGG - chr3_1:66198642-66198661 Msa0369080:intron 35.0%
! CAAGTACATAAGTGGTTCTA+GGG + chr3_1:66198704-66198723 None:intergenic 35.0%
CTTAAGTGCAAGTACATAAG+TGG + chr3_1:66198712-66198731 None:intergenic 35.0%
CACTTATGTACTTGCACTTA+AGG - chr3_1:66198710-66198729 Msa0369080:intron 35.0%
AAGTAGAAATTCATGAGTGC+CGG + chr3_1:66198742-66198761 None:intergenic 35.0%
CTAAACCGAAAAAATGTTCG+AGG - chr3_1:66198868-66198887 Msa0369080:intron 35.0%
ATGTTCGAGGAAATCAGAAA+AGG - chr3_1:66198881-66198900 Msa0369080:intron 35.0%
TGTTCGAGGAAATCAGAAAA+GGG - chr3_1:66198882-66198901 Msa0369080:intron 35.0%
GTCAAAGAGACTCATGAAAT+TGG - chr3_1:66199072-66199091 Msa0369080:CDS 35.0%
AAAAGAACCTGGTTAACATC+TGG + chr3_1:66199312-66199331 None:intergenic 35.0%
AATGTGTTGAGAAAAGAACC+TGG + chr3_1:66199323-66199342 None:intergenic 35.0%
! GATAGAACTCAAGTTGCTTA+TGG - chr3_1:66199659-66199678 Msa0369080:CDS 35.0%
TGCTTATGGATCAAAGAATG+AGG - chr3_1:66199673-66199692 Msa0369080:CDS 35.0%
GATCAAAGAATGAGGTCATT+AGG - chr3_1:66199681-66199700 Msa0369080:CDS 35.0%
ATCTAAGCATCTAGCCATTA+AGG - chr3_1:66199915-66199934 Msa0369080:five_prime_UTR 35.0%
TTAATGGAAGGAAGCCTTAA+TGG + chr3_1:66199932-66199951 None:intergenic 35.0%
CTTCCTTCCATTAAGCAATT+CGG - chr3_1:66199938-66199957 Msa0369080:five_prime_UTR 35.0%
ATTCCGAATTGCTTAATGGA+AGG + chr3_1:66199944-66199963 None:intergenic 35.0%
AAGCAATTCGGAATTTACAC+AGG - chr3_1:66199950-66199969 Msa0369080:five_prime_UTR 35.0%
! GAATTTACACAGGTTGAGTT+TGG - chr3_1:66199960-66199979 Msa0369080:five_prime_UTR 35.0%
GTATGTATTTGGACTACACA+TGG + chr3_1:66199986-66200005 None:intergenic 35.0%
TATAGGAAGAGATATGGTGG+GGG + chr3_1:66196655-66196674 None:intergenic 40.0%
GTATAGGAAGAGATATGGTG+GGG + chr3_1:66196656-66196675 None:intergenic 40.0%
!! GTTGTGCTATGGTCTTGTAT+AGG + chr3_1:66196672-66196691 None:intergenic 40.0%
GTGGCATGTGATGAATAGAT+AGG + chr3_1:66196749-66196768 None:intergenic 40.0%
TCTATTCATCACATGCCACA+TGG - chr3_1:66196750-66196769 Msa0369080:three_prime_UTR 40.0%
ATTATGCATGTAGTGCCATG+TGG + chr3_1:66196768-66196787 None:intergenic 40.0%
AGTATAGCATGTTACTCCAG+TGG - chr3_1:66196906-66196925 Msa0369080:CDS 40.0%
TATTACTGTGCATACCCTGA+AGG + chr3_1:66196991-66197010 None:intergenic 40.0%
TGGTGAGTTACTTACATGTG+TGG - chr3_1:66197283-66197302 Msa0369080:intron 40.0%
AACCTAATCAGTCCCTTATC+CGG + chr3_1:66197474-66197493 None:intergenic 40.0%
!! TAAGGGACTGATTAGGTTGA+TGG - chr3_1:66197476-66197495 Msa0369080:CDS 40.0%
!! ATTAGGTTGATGGTGTGCAT+GGG - chr3_1:66197486-66197505 Msa0369080:CDS 40.0%
AAAGTGAAGACAGCTTCTTG+TGG - chr3_1:66197534-66197553 Msa0369080:CDS 40.0%
TTGGTCCAATTCCTAGACAT+TGG - chr3_1:66197696-66197715 Msa0369080:intron 40.0%
TGGATCCAATGTCTAGGAAT+TGG + chr3_1:66197704-66197723 None:intergenic 40.0%
AGGTGTGGAAAAGTTCTTGT+AGG + chr3_1:66197810-66197829 None:intergenic 40.0%
AGCTCATGGGGATAATAAGA+TGG + chr3_1:66198139-66198158 None:intergenic 40.0%
!! TTTTTGGTCAAGTAGCCTAG+TGG + chr3_1:66198273-66198292 None:intergenic 40.0%
GTCACCAAATTTCTATGCAC+AGG - chr3_1:66198341-66198360 Msa0369080:intron 40.0%
AAGGCCTGTGCATAGAAATT+TGG + chr3_1:66198348-66198367 None:intergenic 40.0%
CTATGCTTGAACCATCAAGA+GGG + chr3_1:66198575-66198594 None:intergenic 40.0%
ACTATGCTTGAACCATCAAG+AGG + chr3_1:66198576-66198595 None:intergenic 40.0%
ACTCCAATCAACTTATCACC+AGG + chr3_1:66198639-66198658 None:intergenic 40.0%
GCAAGTACATAAGTGGTTCT+AGG + chr3_1:66198705-66198724 None:intergenic 40.0%
AGTAGAAATTCATGAGTGCC+GGG + chr3_1:66198741-66198760 None:intergenic 40.0%
GAGACTCATGAAATTGGTGA+AGG - chr3_1:66199078-66199097 Msa0369080:CDS 40.0%
ATGTGGCTCTCAAATTTCCA+GGG + chr3_1:66199116-66199135 None:intergenic 40.0%
AATGTGGCTCTCAAATTTCC+AGG + chr3_1:66199117-66199136 None:intergenic 40.0%
ATAATCGGCGTTGTCAAATG+TGG + chr3_1:66199133-66199152 None:intergenic 40.0%
TACACATTGAGATACACTGG+AGG - chr3_1:66199279-66199298 Msa0369080:intron 40.0%
ATTGAGATACACTGGAGGAA+TGG - chr3_1:66199284-66199303 Msa0369080:intron 40.0%
CTCAAACAACAGTCTCAACT+TGG + chr3_1:66199546-66199565 None:intergenic 40.0%
! CAAGTTGAGACTGTTGTTTG+AGG - chr3_1:66199544-66199563 Msa0369080:intron 40.0%
! TTGTTTGAGGTAGCTCCATT+AGG - chr3_1:66199557-66199576 Msa0369080:intron 40.0%
GGACTCTTGATTGAAAATGC+TGG - chr3_1:66199578-66199597 Msa0369080:intron 40.0%
CTCTTGATTGAAAATGCTGG+AGG - chr3_1:66199581-66199600 Msa0369080:intron 40.0%
CCTTGTCTAGCACAGATTTA+TGG + chr3_1:66199622-66199641 None:intergenic 40.0%
CCATAAATCTGTGCTAGACA+AGG - chr3_1:66199619-66199638 Msa0369080:intron 40.0%
TATGGTTCATCAAGGCTCAA+GGG - chr3_1:66199719-66199738 Msa0369080:exon 40.0%
ATGGCTAGATGCTTAGATGT+TGG + chr3_1:66199913-66199932 None:intergenic 40.0%
! ATAGGAAGAGATATGGTGGG+GGG + chr3_1:66196654-66196673 None:intergenic 45.0%
!! ACTACGAAGAAAAGCACCAC+TGG + chr3_1:66196925-66196944 None:intergenic 45.0%
ACTGTCGCCAATTTCGCATT+TGG + chr3_1:66197262-66197281 None:intergenic 45.0%
ATGCGAAATTGGCGACAGTT+TGG - chr3_1:66197263-66197282 Msa0369080:intron 45.0%
ATTCTTGTCAAAGGCGACAC+CGG - chr3_1:66197452-66197471 Msa0369080:intron 45.0%
!! GATTAGGTTGATGGTGTGCA+TGG - chr3_1:66197485-66197504 Msa0369080:CDS 45.0%
! TCCACACCTAGAATCGACTT+CGG - chr3_1:66197821-66197840 Msa0369080:intron 45.0%
! GTTATCCCGAAGTCGATTCT+AGG + chr3_1:66197830-66197849 None:intergenic 45.0%
CTTCGGGATAACACACTTCA+AGG - chr3_1:66197838-66197857 Msa0369080:intron 45.0%
ACCAACTGAGCTAAGCTCAT+GGG + chr3_1:66198152-66198171 None:intergenic 45.0%
TACCAACTGAGCTAAGCTCA+TGG + chr3_1:66198153-66198172 None:intergenic 45.0%
ATGAGCTTAGCTCAGTTGGT+AGG - chr3_1:66198152-66198171 Msa0369080:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+GGG - chr3_1:66198153-66198172 Msa0369080:intron 45.0%
! TGCATTTTATATGCAGGGGC+CGG - chr3_1:66198180-66198199 Msa0369080:intron 45.0%
!! GCAGAAGTGAGAGTGTTTCA+AGG + chr3_1:66198367-66198386 None:intergenic 45.0%
AATCCCTGAGCTTCAAGACA+TGG - chr3_1:66198407-66198426 Msa0369080:intron 45.0%
ATCCCTGAGCTTCAAGACAT+GGG - chr3_1:66198408-66198427 Msa0369080:intron 45.0%
GTTGCATTTGACCCTCTTGA+TGG - chr3_1:66198561-66198580 Msa0369080:intron 45.0%
TTCACAGTAGGCACCATCTT+TGG - chr3_1:66198606-66198625 Msa0369080:intron 45.0%
! TAGGCACCATCTTTGGTGTA+TGG - chr3_1:66198613-66198632 Msa0369080:intron 45.0%
!! TGGCCTGGTGATAAGTTGAT+TGG - chr3_1:66198633-66198652 Msa0369080:intron 45.0%
! AGATCAAGTTGCTGCAGCTA+TGG - chr3_1:66198668-66198687 Msa0369080:intron 45.0%
! GATCAAGTTGCTGCAGCTAT+GGG - chr3_1:66198669-66198688 Msa0369080:intron 45.0%
! GTAGAAATTCATGAGTGCCG+GGG + chr3_1:66198740-66198759 None:intergenic 45.0%
GAAGGAAAACTATTCTCCCC+TGG - chr3_1:66199096-66199115 Msa0369080:CDS 45.0%
TGTGGCTCTCAAATTTCCAG+GGG + chr3_1:66199115-66199134 None:intergenic 45.0%
! TGACAACGCCGATTATGCTA+AGG - chr3_1:66199137-66199156 Msa0369080:CDS 45.0%
! AATGGTGCCAGATGTTAACC+AGG - chr3_1:66199302-66199321 Msa0369080:intron 45.0%
CAACAGTCTCAACTTGGCTT+TGG + chr3_1:66199540-66199559 None:intergenic 45.0%
GTATGGTTCATCAAGGCTCA+AGG - chr3_1:66199718-66199737 Msa0369080:exon 45.0%
!!! CATTTTTTTTTTTTTTTTTT+TGG + chr3_1:66198289-66198308 None:intergenic 5.0%
!! CAAAAAAAAAAAAAAAAAAA+TGG - chr3_1:66198287-66198306 Msa0369080:intron 5.0%
! TAGGAAGAGATATGGTGGGG+GGG + chr3_1:66196653-66196672 None:intergenic 50.0%
CATACCCTGAAGGCAGAAGA+GGG + chr3_1:66196981-66197000 None:intergenic 50.0%
TCAAAGGCGACACCGGATAA+GGG - chr3_1:66197459-66197478 Msa0369080:intron 50.0%
CACCGGATAAGGGACTGATT+AGG - chr3_1:66197469-66197488 Msa0369080:intron 50.0%
GTGAAGACAGCTTCTTGTGG+TGG - chr3_1:66197537-66197556 Msa0369080:CDS 50.0%
GCAACTTGCAGTGGATATGC+TGG - chr3_1:66197590-66197609 Msa0369080:intron 50.0%
! CCACACCTAGAATCGACTTC+GGG - chr3_1:66197822-66197841 Msa0369080:intron 50.0%
CCAACTGAGCTAAGCTCATG+GGG + chr3_1:66198151-66198170 None:intergenic 50.0%
! GCATTTTATATGCAGGGGCC+GGG - chr3_1:66198181-66198200 Msa0369080:intron 50.0%
! CATTTTATATGCAGGGGCCG+GGG - chr3_1:66198182-66198201 Msa0369080:intron 50.0%
! TTGTGGAGAAGTGGAGTGTC+CGG + chr3_1:66198216-66198235 None:intergenic 50.0%
! TTGTGTGAGCTCTAGCCACT+AGG - chr3_1:66198255-66198274 Msa0369080:intron 50.0%
CTCCCATGTCTTGAAGCTCA+GGG + chr3_1:66198413-66198432 None:intergenic 50.0%
! ACCATCTTTGGTGTATGGCC+TGG - chr3_1:66198618-66198637 Msa0369080:intron 50.0%
ACCAGGCCATACACCAAAGA+TGG + chr3_1:66198622-66198641 None:intergenic 50.0%
! GCTGCAGCTATGGGAGTTTT+AGG - chr3_1:66198678-66198697 Msa0369080:intron 50.0%
CTTGCACTTAAGGACTTCCC+CGG - chr3_1:66198720-66198739 Msa0369080:intron 50.0%
!! CTCAACTTGGCTTTGGCAGT+TGG + chr3_1:66199533-66199552 None:intergenic 50.0%
GCTTAAGCACTTGCTCCAAC+AGG + chr3_1:66199752-66199771 None:intergenic 50.0%
!! GATGGAGGGTAGGGAGTGTT+TGG + chr3_1:66196955-66196974 None:intergenic 55.0%
! AGAGGGAGTGATGGAGGGTA+GGG + chr3_1:66196964-66196983 None:intergenic 55.0%
! AAGAGGGAGTGATGGAGGGT+AGG + chr3_1:66196965-66196984 None:intergenic 55.0%
! GCAGAAGAGGGAGTGATGGA+GGG + chr3_1:66196969-66196988 None:intergenic 55.0%
GAAGGCAGAAGAGGGAGTGA+TGG + chr3_1:66196973-66196992 None:intergenic 55.0%
TCACTCCCTCTTCTGCCTTC+AGG - chr3_1:66196973-66196992 Msa0369080:CDS 55.0%
CACTCCCTCTTCTGCCTTCA+GGG - chr3_1:66196974-66196993 Msa0369080:CDS 55.0%
GCATACCCTGAAGGCAGAAG+AGG + chr3_1:66196982-66197001 None:intergenic 55.0%
GTCAAAGGCGACACCGGATA+AGG - chr3_1:66197458-66197477 Msa0369080:intron 55.0%
TGGGGATGAGCAACTTGCAG+TGG - chr3_1:66197581-66197600 Msa0369080:intron 55.0%
! CCCGAAGTCGATTCTAGGTG+TGG + chr3_1:66197825-66197844 None:intergenic 55.0%
CCCCATGAGCTTAGCTCAGT+TGG - chr3_1:66198148-66198167 Msa0369080:intron 55.0%
! TGTGGAGAAGTGGAGTGTCC+GGG + chr3_1:66198215-66198234 None:intergenic 55.0%
CCTCCCATGTCTTGAAGCTC+AGG + chr3_1:66198414-66198433 None:intergenic 55.0%
CCTGAGCTTCAAGACATGGG+AGG - chr3_1:66198411-66198430 Msa0369080:intron 55.0%
GACATGGGAGGTCCAGTTGA+TGG - chr3_1:66198423-66198442 Msa0369080:intron 55.0%
GCTGGAGGTTACAGCAGTGA+TGG - chr3_1:66199596-66199615 Msa0369080:intron 55.0%
GGTTCATCAAGGCTCAAGGG+TGG - chr3_1:66199722-66199741 Msa0369080:exon 55.0%
CTCAAGGGTGGTGTACCTGT+TGG - chr3_1:66199734-66199753 Msa0369080:exon 55.0%
GGCAGAAGAGGGAGTGATGG+AGG + chr3_1:66196970-66196989 None:intergenic 60.0%
! GTGGAGAAGTGGAGTGTCCG+GGG + chr3_1:66198214-66198233 None:intergenic 60.0%
AGTGTCCGGGGTTCGAACCC+CGG + chr3_1:66198202-66198221 None:intergenic 65.0%
AGGGGCCGGGGTTCGAACCC+CGG - chr3_1:66198194-66198213 Msa0369080:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 66196601 66200031 66196601 ID=Msa0369080;Name=Msa0369080
chr3_1 mRNA 66196601 66200031 66196601 ID=Msa0369080-mRNA-1;Parent=Msa0369080;Name=Msa0369080-mRNA-1;_AED=0.08;_eAED=0.08;_QI=296|1|1|1|1|1|8|262|387
chr3_1 exon 66196601 66197144 66196601 ID=Msa0369080-mRNA-1:exon:13413;Parent=Msa0369080-mRNA-1
chr3_1 exon 66197309 66197380 66197309 ID=Msa0369080-mRNA-1:exon:13412;Parent=Msa0369080-mRNA-1
chr3_1 exon 66197474 66197574 66197474 ID=Msa0369080-mRNA-1:exon:13411;Parent=Msa0369080-mRNA-1
chr3_1 exon 66197861 66198082 66197861 ID=Msa0369080-mRNA-1:exon:13410;Parent=Msa0369080-mRNA-1
chr3_1 exon 66198188 66198269 66198188 ID=Msa0369080-mRNA-1:exon:13409;Parent=Msa0369080-mRNA-1
chr3_1 exon 66199000 66199185 66199000 ID=Msa0369080-mRNA-1:exon:13408;Parent=Msa0369080-mRNA-1
chr3_1 exon 66199348 66199467 66199348 ID=Msa0369080-mRNA-1:exon:13407;Parent=Msa0369080-mRNA-1
chr3_1 exon 66199637 66200031 66199637 ID=Msa0369080-mRNA-1:exon:13406;Parent=Msa0369080-mRNA-1
chr3_1 five_prime_UTR 66199736 66200031 66199736 ID=Msa0369080-mRNA-1:five_prime_utr;Parent=Msa0369080-mRNA-1
chr3_1 CDS 66199637 66199735 66199637 ID=Msa0369080-mRNA-1:cds;Parent=Msa0369080-mRNA-1
chr3_1 CDS 66199348 66199467 66199348 ID=Msa0369080-mRNA-1:cds;Parent=Msa0369080-mRNA-1
chr3_1 CDS 66199000 66199185 66199000 ID=Msa0369080-mRNA-1:cds;Parent=Msa0369080-mRNA-1
chr3_1 CDS 66198188 66198269 66198188 ID=Msa0369080-mRNA-1:cds;Parent=Msa0369080-mRNA-1
chr3_1 CDS 66197861 66198082 66197861 ID=Msa0369080-mRNA-1:cds;Parent=Msa0369080-mRNA-1
chr3_1 CDS 66197474 66197574 66197474 ID=Msa0369080-mRNA-1:cds;Parent=Msa0369080-mRNA-1
chr3_1 CDS 66197309 66197380 66197309 ID=Msa0369080-mRNA-1:cds;Parent=Msa0369080-mRNA-1
chr3_1 CDS 66196863 66197144 66196863 ID=Msa0369080-mRNA-1:cds;Parent=Msa0369080-mRNA-1
chr3_1 three_prime_UTR 66196601 66196862 66196601 ID=Msa0369080-mRNA-1:three_prime_utr;Parent=Msa0369080-mRNA-1
Gene Sequence

>Msa0369080

ATGGAAACTAGTATAGCATGTTACTCCAGTGGTGCTTTTCTTCGTAGTGTTTCTGCCAAACACTCCCTACCCTCCATCACTCCCTCTTCTGCCTTCAGGAGTTTGAAATCAAGCTCTTTATTTGGAGAATCTCTTAGAGTGTCATCTAAATCAACACTTAAGTTTTCAAGGGCAAAGAGTACTTCAGTCATAACCAAATGCGAAATTGGCGACAGTTTGGAAGAATTCTTGTCAAAGGCGACACCGGATAAGGGACTGATTAGGTTGATGGTGTGCATGGGAGAAGCATTGAGAACAATTTCTTTCAAAGTGAAGACAGCTTCTTGTGGTGGAACACAATGTGTTAACTCTTTTGGGGATGAGCAACTTGCAGTGGATATGCTGGCTAACAATCTTCTTTTTGAGGCCTTGAAACACTCTCACTTCTGCAAGTACGCTTGCTCAGAAGAAATCCCTGAGCTTCAAGACATGGGAGGTCCAGTTGATGGAGGATTTAGTGTTGCATTTGACCCTCTTGATGGTTCAAGCATAGTAGACACAAATTTCACAGTAGGCACCATCTTTGGTGTATGGCCTGGTGATAAGTTGATTGGAGTAACAGGAAGAGATCAAGTTGCTGCAGCTATGGGAGTTTTAGGCCCTAGAACCACTTATGTACTTGCACTTAAGGACTTCCCCGGCACTCATGAATTTCTACTTCTTGATGAAGGAAAATGGCAGCATGTCAAAGAGACTCATGAAATTGGTGAAGGAAAACTATTCTCCCCTGGAAATTTGAGAGCCACATTTGACAACGCCGATTATGCTAAGTTGGTTGATTACTATGTTCGAGAAAAATACACATTGAGATACACTGGAGGAATGGTGCCAGATGTTAACCAGATTATTGTAAAAGAAAAGGGAATATTTACAAATGTGACATCACCAACTGCCAAAGCCAAGTTGAGACTGTTGTTTGAGGTAGCTCCATTAGGACTCTTGATTGAAAATGCTGGAGGTTACAGCAGTGATGGCCATAAATCTGTGCTAGACAAGGTCATTGAGAACATTGATGATAGAACTCAAGTTGCTTATGGATCAAAGAATGAGGTCATTAGGTTTGAAGAAACATTGTATGGTTCATCAAGGCTCAAGGGTGGTGTACCTGTTGGAGCAAGTGCTTAA

Protein sequence

>Msa0369080

METSIACYSSGAFLRSVSAKHSLPSITPSSAFRSLKSSSLFGESLRVSSKSTLKFSRAKSTSVITKCEIGDSLEEFLSKATPDKGLIRLMVCMGEALRTISFKVKTASCGGTQCVNSFGDEQLAVDMLANNLLFEALKHSHFCKYACSEEIPELQDMGGPVDGGFSVAFDPLDGSSIVDTNFTVGTIFGVWPGDKLIGVTGRDQVAAAMGVLGPRTTYVLALKDFPGTHEFLLLDEGKWQHVKETHEIGEGKLFSPGNLRATFDNADYAKLVDYYVREKYTLRYTGGMVPDVNQIIVKEKGIFTNVTSPTAKAKLRLLFEVAPLGLLIENAGGYSSDGHKSVLDKVIENIDDRTQVAYGSKNEVIRFEETLYGSSRLKGGVPVGASA*