AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0549700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0549700 MtrunA17_Chr4g0034391 93.435 655 24 3 1 650 1 641 0.0 1150
Msa0549700 MtrunA17_Chr4g0064601 34.824 313 162 11 22 322 7 289 5.41e-34 131
Msa0549700 MtrunA17_Chr4g0032081 26.812 276 171 9 62 323 87 345 1.69e-17 86.3
Msa0549700 MtrunA17_Chr8g0338051 34.911 169 83 8 97 258 93 241 1.82e-15 78.2
Msa0549700 MtrunA17_Chr4g0009941 47.297 74 38 1 179 252 107 179 1.05e-13 71.6
Msa0549700 MtrunA17_Chr7g0238901 37.500 96 56 2 179 274 181 272 1.77e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0549700 AT3G18890.1 50.733 682 234 21 9 646 13 636 0.0 542
Msa0549700 AT2G34460.1 36.264 273 140 10 63 325 32 280 1.94e-32 127
Msa0549700 AT3G46780.1 29.520 271 151 10 75 323 89 341 8.57e-14 74.7
Msa0549700 AT4G31530.2 30.088 226 121 11 97 304 93 299 1.71e-13 72.8
Msa0549700 AT4G31530.1 30.088 226 121 11 97 304 93 299 1.96e-13 72.4
Msa0549700 AT2G37660.1 40.860 93 50 3 172 261 168 258 7.44e-13 70.5
Msa0549700 AT5G02240.1 41.975 81 32 2 179 252 105 177 5.32e-12 67.0

Find 223 sgRNAs with CRISPR-Local

Find 402 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCCATTGGTATGGCTTAA+AGG 0.193367 4_1:+44880296 None:intergenic
GCTTGATACTGCATCAATAT+TGG 0.200433 4_1:+44876155 None:intergenic
GTTCATGAAATGTGAGTATT+TGG 0.202709 4_1:+44880186 None:intergenic
TCACTGGGAACAAACAAATT+TGG 0.210597 4_1:-44878874 Msa0549700:CDS
ATCATAAGAGCTCAAGTTTC+AGG 0.231625 4_1:-44880118 Msa0549700:intron
GGCACTTCTGCCACTGGTTC+TGG 0.235947 4_1:+44878038 None:intergenic
AATGCTGATTTAATCTGTTC+TGG 0.248713 4_1:+44879144 None:intergenic
TGTTGATACTGCATCAATAT+TGG 0.256072 4_1:+44876197 None:intergenic
TGTTGATACTGCATCAATAT+TGG 0.256072 4_1:+44876281 None:intergenic
ACAAAGTATCTTCAGTTGAT+AGG 0.258571 4_1:+44878528 None:intergenic
TGAAAGTACTATAACATAAA+TGG 0.264411 4_1:+44875404 None:intergenic
GAAGATGTATTTGGTGCATT+AGG 0.304395 4_1:+44876318 None:intergenic
GAACAGATTAAATCAGCATT+AGG 0.306427 4_1:-44879141 Msa0549700:CDS
TCAACTGAAGATACTTTGTT+TGG 0.310359 4_1:-44878524 Msa0549700:CDS
CTTGATACTGCATCAATATT+GGG 0.311245 4_1:+44876156 None:intergenic
ATTGATGTAGTTGGTGCATT+AGG 0.312719 4_1:+44877431 None:intergenic
AAAAGTCATCAAGAAATAAA+TGG 0.316117 4_1:+44875534 None:intergenic
TGAAATTGTGGAATGTGATT+TGG 0.325323 4_1:-44879172 Msa0549700:CDS
CAAAGTAAATCACTTCATAT+TGG 0.327885 4_1:-44878902 Msa0549700:CDS
CAACTGAAGATACTTTGTTT+GGG 0.335926 4_1:-44878523 Msa0549700:CDS
GTATTTGTTGCTGGTGCTAC+TGG 0.357027 4_1:-44879954 Msa0549700:CDS
ACTTGATACTTCCTCAATCT+TGG 0.357838 4_1:+44877382 None:intergenic
GTTAAACAATTGAAGCTTGA+TGG 0.358751 4_1:-44879304 Msa0549700:CDS
GCTGCAGCTGTTAAACCTTC+TGG 0.360943 4_1:-44880223 Msa0549700:CDS
GTGGTCTTGACTTTGGTTCA+TGG 0.366970 4_1:+44876076 None:intergenic
CTTTCACCACAACACCTTCC+AGG 0.367198 4_1:-44880159 Msa0549700:CDS
CACCTCACTCACAGAAGATA+TGG 0.369750 4_1:+44876221 None:intergenic
GAACCCACAGAAGATGTATT+TGG 0.374097 4_1:+44876309 None:intergenic
TGAGAAATGACATCTATTAC+TGG 0.375014 4_1:+44877738 None:intergenic
TTACTGACAGCTGCAGTATC+TGG 0.378629 4_1:+44878128 None:intergenic
AATCTGGCTTACGCAGTATA+AGG 0.381547 4_1:+44877954 None:intergenic
GAGAGCTGGTGCATTGGTTC+AGG 0.386003 4_1:-44879761 Msa0549700:intron
CTTCATATTGGTTACTTCAC+TGG 0.386091 4_1:-44878890 Msa0549700:CDS
GTTGATACTGCATCAATATT+GGG 0.387116 4_1:+44876198 None:intergenic
GTTGATACTGCATCAATATT+GGG 0.387116 4_1:+44876282 None:intergenic
CAATATGAAGTGATTTACTT+TGG 0.403428 4_1:+44878903 None:intergenic
TCTTCCACTGAAAGTTGAGC+TGG 0.403497 4_1:+44877353 None:intergenic
ATGGATACTGCATCAGTATT+GGG 0.405249 4_1:+44876240 None:intergenic
GTTGTTCTGTTTCTTTCTGA+GGG 0.405384 4_1:+44878060 None:intergenic
TTGGAATCTTTCTTCTCAGC+AGG 0.406079 4_1:+44879990 None:intergenic
GGATGGAAGTATGAACTCTT+TGG 0.410458 4_1:+44880317 None:intergenic
TTCTTGTCACTAGGCTTGAC+TGG 0.411639 4_1:+44877822 None:intergenic
CAGACAACAACTTCCTCAAA+AGG 0.412884 4_1:-44877717 Msa0549700:CDS
TTCAGGGAGCTTATAAAGCT+TGG 0.416341 4_1:-44879817 Msa0549700:intron
TCTTTCTGAGGGGAAATACT+AGG 0.416692 4_1:+44878071 None:intergenic
TCTATTACTGGAATGTTACT+TGG 0.418173 4_1:+44877750 None:intergenic
TGTATCTTCCACTGAGAGTT+GGG 0.420266 4_1:+44876122 None:intergenic
AACAGATTAAATCAGCATTA+GGG 0.420765 4_1:-44879140 Msa0549700:CDS
TAGGAACTGCCTCCTTCATA+TGG 0.421595 4_1:-44875764 Msa0549700:three_prime_UTR
ACCTTGGGCGAAGGAATGTA+AGG 0.425014 4_1:+44878261 None:intergenic
AGACCCTGTCCATCCTCCTT+TGG 0.426961 4_1:+44876099 None:intergenic
AAATCAACTTACATTGCATA+AGG 0.428183 4_1:+44877275 None:intergenic
TCACAATGACTTACTGTGTA+TGG 0.429213 4_1:+44878688 None:intergenic
GGGACAAGTGTCAAACCTTC+AGG 0.430341 4_1:-44878501 Msa0549700:intron
GATAATTTAGTATTTGTTGC+TGG 0.433238 4_1:-44879963 Msa0549700:CDS
AAATACTAAATTATCATCCT+TGG 0.436092 4_1:+44879971 None:intergenic
GGTTGTTCTGTTTCTTTCTG+AGG 0.437247 4_1:+44878059 None:intergenic
AAATACATCTTCTGTGGGTT+CGG 0.438355 4_1:-44876307 Msa0549700:CDS
GTGTATCTTCCACTGAGAGT+TGG 0.442393 4_1:+44876121 None:intergenic
GGTGAAAGTGGTCTTGACTT+TGG 0.446897 4_1:+44876069 None:intergenic
TTAAAGTCAGGGCTGGAGTA+AGG 0.451884 4_1:-44879792 Msa0549700:CDS
CCATTAGAATCTTCTATCAA+TGG 0.452110 4_1:+44880418 None:intergenic
CAAAGTATCTTCAGTTGATA+GGG 0.452346 4_1:+44878529 None:intergenic
GGGGAGTCTTGTGTTGGAAA+AGG 0.452651 4_1:-44878744 Msa0549700:CDS
TGAACTAGGAGGCTTTAAAT+CGG 0.454611 4_1:+44877460 None:intergenic
GAACTAGGAGGCTTTAAATC+AGG 0.455562 4_1:+44876348 None:intergenic
GGTGAAAGTGGTCTTGACTT+TGG 0.459043 4_1:+44877296 None:intergenic
GAATCAACTTACATTGCAAA+AGG 0.459172 4_1:+44876048 None:intergenic
TATGGATACTGCATCAGTAT+TGG 0.460775 4_1:+44876239 None:intergenic
ATTGCTACGGATTCTACTCC+TGG 0.465646 4_1:+44880141 None:intergenic
ATCAACATCTTCTGTGGGTG+GGG 0.466478 4_1:-44876181 Msa0549700:CDS
ATCAACATCTTCTGTGGGTG+GGG 0.466478 4_1:-44876265 Msa0549700:CDS
TTCCTTCTCACTGGCACCAA+TGG 0.467693 4_1:+44879095 None:intergenic
ACTTTCATATTGTAAAATAG+TGG 0.469678 4_1:-44878355 Msa0549700:CDS
GGCAGCCATGGCTAAGAATC+CGG 0.477270 4_1:-44878379 Msa0549700:CDS
TGCTCAGAGAGCTGGTGCAT+TGG 0.480019 4_1:-44879767 Msa0549700:CDS
GTGACATTAGCCGAGGGAGC+TGG 0.483141 4_1:+44878104 None:intergenic
TATCAACATCTTCTGTGGGT+GGG 0.486345 4_1:-44876182 Msa0549700:CDS
TATCAACATCTTCTGTGGGT+GGG 0.486345 4_1:-44876266 Msa0549700:CDS
TCTTCCACTGAGAGTTGGGC+TGG 0.488054 4_1:+44876126 None:intergenic
GTAGGCCTCTCCATGCCTCC+AGG 0.491171 4_1:+44878581 None:intergenic
GATTCTGTCCATCATCCTGC+GGG 0.491425 4_1:+44877327 None:intergenic
TACACCAAAGGAGGATGGAC+AGG 0.491629 4_1:-44876103 Msa0549700:CDS
TTCATATTGGTTACTTCACT+GGG 0.496841 4_1:-44878889 Msa0549700:CDS
AGAGGAGGGAATGGTAGTTG+AGG 0.502856 4_1:+44880261 None:intergenic
GGTTGTTCTGTTTCTTTCTG+AGG 0.503577 4_1:+44878005 None:intergenic
GAAGACACCCCGCAGGATGA+TGG 0.504805 4_1:-44877335 Msa0549700:CDS
TCACTAGGCTTGACTGGAGA+AGG 0.505013 4_1:+44877828 None:intergenic
GCATTAGGAGATGGTGAACT+AGG 0.505609 4_1:+44876333 None:intergenic
GCATTAGGAGATGGTGAACT+AGG 0.505609 4_1:+44877446 None:intergenic
TCTTGTTACCAGCATCAACT+AGG 0.506630 4_1:+44879022 None:intergenic
GAGGCCTACTGATGCTTACA+AGG 0.507682 4_1:-44878567 Msa0549700:CDS
AAAGCGGCTTACGCTGCAAA+AGG 0.509111 4_1:+44877678 None:intergenic
GTAAGGAGTGCTCAGAGAGC+TGG 0.510095 4_1:-44879775 Msa0549700:CDS
GTGGTCTTGACTTTGGCTCA+TGG 0.511247 4_1:+44877303 None:intergenic
ACCTTCCTTCAGACAATCCT+AGG 0.512572 4_1:-44875783 Msa0549700:exon
ATCAATATCCACATCTTCTG+TGG 0.513109 4_1:-44877414 Msa0549700:CDS
TCTACTCCTGGAAGGTGTTG+TGG 0.513273 4_1:+44880153 None:intergenic
GATAGTGAGGCCTGGAGGCA+TGG 0.513704 4_1:-44878591 Msa0549700:CDS
TACATTGCAAAAGGTGAAAG+TGG 0.514619 4_1:+44876057 None:intergenic
TCTTTCTGAGGAGTAATGCT+AGG 0.517921 4_1:+44878017 None:intergenic
CTTGGAGCATCTGAAGAACT+AGG 0.518040 4_1:+44877768 None:intergenic
TGTCAATGGCGCAGTTGTCT+CGG 0.519089 4_1:+44878323 None:intergenic
TACATTGCATAAGGTGAAAG+TGG 0.521440 4_1:+44877284 None:intergenic
ATCCACATCTTCTGTGGGTG+AGG 0.521943 4_1:-44877408 Msa0549700:CDS
GAACTAGGAGGCTTTAAATC+GGG 0.522104 4_1:+44877461 None:intergenic
GCCATGTAATCTATTCGATA+AGG 0.522613 4_1:+44879054 None:intergenic
CTGGAAGGTGTTGTGGTGAA+AGG 0.523075 4_1:+44880160 None:intergenic
GATGGAAGCAACTATGTGAA+TGG 0.524074 4_1:-44875572 Msa0549700:three_prime_UTR
CACATCTTCTGTGGGTGAGG+TGG 0.525593 4_1:-44877405 Msa0549700:CDS
CCCTTACATTCCTTCGCCCA+AGG 0.525837 4_1:-44878262 Msa0549700:intron
ATGCTAGGCACTTCTGCCAC+TGG 0.528403 4_1:+44878032 None:intergenic
TGTCAGTAATCCAGCTCCCT+CGG 0.533028 4_1:-44878114 Msa0549700:CDS
GGTACAAGTGGAGGGAGTGA+AGG 0.534697 4_1:-44879283 Msa0549700:intron
AATTCAGGTTGCTGAACTCA+TGG 0.535898 4_1:-44878400 Msa0549700:intron
GCTGGTGCTACTGGAAAAGT+TGG 0.537357 4_1:-44879945 Msa0549700:CDS
CACTAGGCTTGACTGGAGAA+GGG 0.537665 4_1:+44877829 None:intergenic
TTTATCTGTTTCTTGTCACT+AGG 0.538287 4_1:+44877813 None:intergenic
CCTTGTCTGATTCCATATGA+AGG 0.538315 4_1:+44875752 None:intergenic
AAGGAAGGTGATGGTGATGC+AGG 0.540221 4_1:+44875797 None:intergenic
CCATTGATAGAAGATTCTAA+TGG 0.541034 4_1:-44880418 Msa0549700:five_prime_UTR
CATTGGTATGGCTTAAAGGA+TGG 0.542618 4_1:+44880300 None:intergenic
AGACAACAACTTCCTCAAAA+GGG 0.544213 4_1:-44877716 Msa0549700:CDS
TGTAGAGAAGCTTGAAATTG+TGG 0.545007 4_1:-44879184 Msa0549700:CDS
GTATCAACATCTTCTGTGGG+TGG 0.545073 4_1:-44876183 Msa0549700:CDS
GTATCAACATCTTCTGTGGG+TGG 0.545073 4_1:-44876267 Msa0549700:CDS
ATATGAAGGAGGCAGTTCCT+AGG 0.545779 4_1:+44875766 None:intergenic
GTAATCTATTCGATAAGGTC+CGG 0.552580 4_1:+44879059 None:intergenic
CACCATTGGTGCCAGTGAGA+AGG 0.552835 4_1:-44879097 Msa0549700:CDS
GAGCTCTTATGATATTGCTA+CGG 0.556118 4_1:+44880128 None:intergenic
TGAGAAAGCCTCCATTGGTA+TGG 0.556330 4_1:+44880288 None:intergenic
AGCTCCCTCGGCTAATGTCA+CGG 0.560709 4_1:-44878102 Msa0549700:CDS
AACTGAAGATACTTTGTTTG+GGG 0.562205 4_1:-44878522 Msa0549700:CDS
GGAATGTAAGGGCGTTGAGA+AGG 0.562301 4_1:+44878273 None:intergenic
TCATCAAGAAATAAATGGCA+TGG 0.563194 4_1:+44875539 None:intergenic
CTCTCTACGTGTTAGAGAGG+AGG 0.563295 4_1:+44880246 None:intergenic
GATGTGGATATTGATGTAGT+TGG 0.564321 4_1:+44877422 None:intergenic
TGCTGAACTCATGGCAGCCA+TGG 0.565756 4_1:-44878391 Msa0549700:CDS
CTTCCACTGAAAGTTGAGCT+GGG 0.565860 4_1:+44877354 None:intergenic
AAGCTTGATGGTACAAGTGG+AGG 0.568328 4_1:-44879292 Msa0549700:CDS
TGGAAGGTGTTGTGGTGAAA+GGG 0.568808 4_1:+44880161 None:intergenic
GTGAGTGAGAAAGCCTCCAT+TGG 0.570312 4_1:+44880283 None:intergenic
TGGAAGTATGAACTCTTTGG+TGG 0.570655 4_1:+44880320 None:intergenic
TTGTTACTCAAATATGAAGA+TGG 0.571068 4_1:-44875590 Msa0549700:three_prime_UTR
TGCACCAAATACATCTTCTG+TGG 0.571071 4_1:-44876313 Msa0549700:CDS
CCTTTAAGCCATACCAATGG+AGG 0.575552 4_1:-44880296 Msa0549700:exon
ACCTTATCGAATAGATTACA+TGG 0.577220 4_1:-44879055 Msa0549700:CDS
ATTGAGGAAGTATCAAGTAA+TGG 0.580305 4_1:-44877377 Msa0549700:CDS
GAATCTTCTATCAATGGCAG+TGG 0.580736 4_1:+44880424 None:intergenic
GAGGAAGCATTGCTAGCAAG+TGG 0.583190 4_1:-44878715 Msa0549700:CDS
GCATCTGAAGAACTAGGTGT+TGG 0.583270 4_1:+44877774 None:intergenic
TCAATATCCACATCTTCTGT+GGG 0.583412 4_1:-44877413 Msa0549700:CDS
TCTCTACGTGTTAGAGAGGA+GGG 0.583672 4_1:+44880247 None:intergenic
ACGTGTTAGAGAGGAGGGAA+TGG 0.583834 4_1:+44880252 None:intergenic
TTGACTGGAGAAGGGGATGA+CGG 0.585281 4_1:+44877837 None:intergenic
TTGAAGCTTGATGGTACAAG+TGG 0.587112 4_1:-44879295 Msa0549700:CDS
ACTCACTTGAGAATAGCTGC+AGG 0.587473 4_1:+44878847 None:intergenic
TGCTGAGAAGAAAGATTCCA+AGG 0.587792 4_1:-44879988 Msa0549700:CDS
TTCATATTGTAAAATAGTGG+AGG 0.590861 4_1:-44878352 Msa0549700:CDS
ATCCATATCTTCTGTGAGTG+AGG 0.591930 4_1:-44876223 Msa0549700:CDS
GAAGATACACCAAAGGAGGA+TGG 0.594365 4_1:-44876108 Msa0549700:CDS
TGAGTAACAATCCTCCATGT+GGG 0.595668 4_1:+44875603 None:intergenic
GAAAGGTTGACATGGCCAGA+AGG 0.599944 4_1:+44880208 None:intergenic
AGCTTGATGGTACAAGTGGA+GGG 0.600932 4_1:-44879291 Msa0549700:CDS
TGGCCCAGCTCAACTTTCAG+TGG 0.601032 4_1:-44877357 Msa0549700:CDS
TATGTGTGGATATCATATCA+TGG 0.601387 4_1:+44880460 None:intergenic
CATCCTTTAAGCCATACCAA+TGG 0.601615 4_1:-44880299 Msa0549700:exon
TCCTAGGATTGTCTGAAGGA+AGG 0.603155 4_1:+44875782 None:intergenic
CACCTCACCCACAGAAGATG+TGG 0.603210 4_1:+44877406 None:intergenic
TCAACTGTAATATGCACCAT+TGG 0.604959 4_1:-44879111 Msa0549700:CDS
GGGTGAGGTGGCCAAGATTG+AGG 0.606108 4_1:-44877393 Msa0549700:CDS
TTGTTCTGTTTCTTTCTGAG+GGG 0.606733 4_1:+44878061 None:intergenic
TGCAGTATCAACATCTTCTG+TGG 0.608160 4_1:-44876187 Msa0549700:CDS
TGCAGTATCAACATCTTCTG+TGG 0.608160 4_1:-44876271 Msa0549700:CDS
AGTCTTGTGTTGGAAAAGGA+AGG 0.608353 4_1:-44878740 Msa0549700:CDS
AACAGAACAACCAGAACCAG+TGG 0.608935 4_1:-44878048 Msa0549700:CDS
CCTTCATATGGAATCAGACA+AGG 0.608962 4_1:-44875752 Msa0549700:intron
GTGCAATCCTTTGCTATGTG+TGG 0.609108 4_1:+44880446 None:intergenic
TGCTTCCGTGACATTAGCCG+AGG 0.609832 4_1:+44878097 None:intergenic
AACAACTTCCTCAAAAGGGA+AGG 0.609863 4_1:-44877712 Msa0549700:CDS
ACTAGGCTTGACTGGAGAAG+GGG 0.613659 4_1:+44877830 None:intergenic
GTTTCCTTGTAAGCATCAGT+AGG 0.615909 4_1:+44878563 None:intergenic
GCAGTATCAACATCTTCTGT+GGG 0.616304 4_1:-44876186 Msa0549700:CDS
GCAGTATCAACATCTTCTGT+GGG 0.616304 4_1:-44876270 Msa0549700:CDS
GCACCAAATACATCTTCTGT+GGG 0.619349 4_1:-44876312 Msa0549700:CDS
TTGAGTAACAATCCTCCATG+TGG 0.620376 4_1:+44875602 None:intergenic
ATTGATGCAGTATCAAGCAA+TGG 0.622304 4_1:-44876150 Msa0549700:CDS
CTACGGATTCTACTCCTGGA+AGG 0.622955 4_1:+44880145 None:intergenic
AAGTTGGTTCAAGAACAGTC+AGG 0.626940 4_1:-44879929 Msa0549700:intron
AGATTCTGTCCATCATCCTG+CGG 0.627051 4_1:+44877326 None:intergenic
ACTGAAGATACTTTGTTTGG+GGG 0.630131 4_1:-44878521 Msa0549700:CDS
GAAGTACTTACCTTGGGCGA+AGG 0.631651 4_1:+44878252 None:intergenic
AGTTTATGTAGCAACCCACA+TGG 0.631927 4_1:-44875617 Msa0549700:three_prime_UTR
GGAAGTATGAACTCTTTGGT+GGG 0.632285 4_1:+44880321 None:intergenic
AAGTTCCGGATTCTTAGCCA+TGG 0.634573 4_1:+44878374 None:intergenic
CTCCTCTCTAACACGTAGAG+AGG 0.634813 4_1:-44880245 Msa0549700:CDS
TGAAATGTGAGTATTTGGAA+AGG 0.635220 4_1:+44880191 None:intergenic
TTCAGTGGAAGACACCCCGC+AGG 0.635444 4_1:-44877342 Msa0549700:CDS
CCTTGGGCGAAGGAATGTAA+GGG 0.638040 4_1:+44878262 None:intergenic
ATGATATCCACACATAGCAA+AGG 0.638185 4_1:-44880453 Msa0549700:five_prime_UTR
GAAGGTGATGGTGATGCAGG+AGG 0.640994 4_1:+44875800 None:intergenic
GTATTTGGTGCATTAGGAGA+TGG 0.641520 4_1:+44876324 None:intergenic
TGGACCAGCCCAACTCTCAG+TGG 0.643488 4_1:-44876130 Msa0549700:CDS
TGAGGCCTGGAGGCATGGAG+AGG 0.646592 4_1:-44878586 Msa0549700:CDS
AGTGGAAGATACACCAAAGG+AGG 0.647962 4_1:-44876112 Msa0549700:CDS
TTAGGAGATGGTGAACTAGG+AGG 0.652667 4_1:+44876336 None:intergenic
TTAGGAGATGGTGAACTAGG+AGG 0.652667 4_1:+44877449 None:intergenic
ACACCAAAGGAGGATGGACA+GGG 0.656020 4_1:-44876102 Msa0549700:CDS
AACAGAACAACCGAAACCAG+TGG 0.657563 4_1:-44877994 Msa0549700:CDS
ACTGGAGAAGGGGATGACGG+TGG 0.659696 4_1:+44877840 None:intergenic
AGCCTCTCTACGTGTTAGAG+AGG 0.660056 4_1:+44880243 None:intergenic
CAGTTCCTAGGATTGTCTGA+AGG 0.661742 4_1:+44875778 None:intergenic
TACGCAGTATAAGGAGAAAG+CGG 0.663306 4_1:+44877963 None:intergenic
CTCAGTGGAAGATACACCAA+AGG 0.671918 4_1:-44876115 Msa0549700:CDS
TTTCAGATAGTGAGGCCTGG+AGG 0.672933 4_1:-44878596 Msa0549700:intron
GTAGTTGGTGCATTAGGAGA+TGG 0.677079 4_1:+44877437 None:intergenic
GATTGTCTGAAGGAAGGTGA+TGG 0.681966 4_1:+44875788 None:intergenic
GCTTCCGTGACATTAGCCGA+GGG 0.683279 4_1:+44878098 None:intergenic
GTGTTGGAAAAGGAAGGCAG+AGG 0.684666 4_1:-44878734 Msa0549700:CDS
TGTCTGATTCCATATGAAGG+AGG 0.693470 4_1:+44875755 None:intergenic
AGTATTTGGAAAGGTTGACA+TGG 0.695746 4_1:+44880200 None:intergenic
TTATGTAGCAACCCACATGG+AGG 0.728794 4_1:-44875614 Msa0549700:three_prime_UTR
ATTCTGTCCATCATCCTGCG+GGG 0.755078 4_1:+44877328 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCTATAACAAATAAAATA+AGG + chr4_1:44876303-44876322 None:intergenic 10.0%
!! AACATAAAAATAAGATAATT+AGG + chr4_1:44877162-44877181 None:intergenic 10.0%
!!! ATTTAAGATATATAGATATA+TGG - chr4_1:44877354-44877373 Msa0549700:CDS 10.0%
!! TTATAATCAGTTTCTTAAAA+TGG - chr4_1:44876422-44876441 Msa0549700:intron 15.0%
!!! TCTATTTTTGTAGTTTATTT+TGG - chr4_1:44877029-44877048 Msa0549700:intron 15.0%
!!! CTATTTTTGTAGTTTATTTT+GGG - chr4_1:44877030-44877049 Msa0549700:intron 15.0%
!!! TATTTTTGTAGTTTATTTTG+GGG - chr4_1:44877031-44877050 Msa0549700:intron 15.0%
!!! CATAATTGTGATATATTTTT+TGG - chr4_1:44880129-44880148 Msa0549700:CDS 15.0%
!! AAATACTAAATTATCATCCT+TGG + chr4_1:44875826-44875845 None:intergenic 20.0%
!! AAGAAAATTACTATCTCAAA+AGG + chr4_1:44875929-44875948 None:intergenic 20.0%
!! AGTTTCTTAAAATGGATAAT+TGG - chr4_1:44876430-44876449 Msa0549700:intron 20.0%
!!! ATTTTACAATATGAAAGTTC+CGG + chr4_1:44877437-44877456 None:intergenic 20.0%
!! ACTTTCATATTGTAAAATAG+TGG - chr4_1:44877439-44877458 Msa0549700:CDS 20.0%
!! GTCACAAAATGTATTATATA+CGG + chr4_1:44877567-44877586 None:intergenic 20.0%
!! TATATACCAACTTAGTTATT+TGG + chr4_1:44877909-44877928 None:intergenic 20.0%
!! AAGAACTAAGAAAAAGTTAA+AGG + chr4_1:44878551-44878570 None:intergenic 20.0%
!!! ACAAACATTTTACAATTTCA+GGG + chr4_1:44878908-44878927 None:intergenic 20.0%
!!! CTAATTTGCATATGAAATTT+AGG + chr4_1:44879114-44879133 None:intergenic 20.0%
!!! AACAACATTTTACAATTTCA+TGG - chr4_1:44879242-44879261 Msa0549700:intron 20.0%
!! GAAGAAATAAGAAAAATTGA+TGG + chr4_1:44879779-44879798 None:intergenic 20.0%
!! AAAAGTCATCAAGAAATAAA+TGG + chr4_1:44880263-44880282 None:intergenic 20.0%
!! TTGCAATTTAAATAAGGAAA+AGG - chr4_1:44880343-44880362 Msa0549700:five_prime_UTR 20.0%
!!! TGAAAGTACTATAACATAAA+TGG + chr4_1:44880393-44880412 None:intergenic 20.0%
!! GATAATTTAGTATTTGTTGC+TGG - chr4_1:44875831-44875850 Msa0549700:intron 25.0%
! GATTTAACTAATGGCATATT+TGG - chr4_1:44876082-44876101 Msa0549700:CDS 25.0%
!! ACTTATTTGAGTTTATCTAC+TGG - chr4_1:44876109-44876128 Msa0549700:CDS 25.0%
! AATAAGATGAAAACAGCTTA+TGG + chr4_1:44876190-44876209 None:intergenic 25.0%
! AACAGATTAAATCAGCATTA+GGG - chr4_1:44876654-44876673 Msa0549700:intron 25.0%
!! AAGGAAATTTTTGACATTAC+CGG - chr4_1:44876716-44876735 Msa0549700:intron 25.0%
! CAATATGAAGTGATTTACTT+TGG + chr4_1:44876894-44876913 None:intergenic 25.0%
! CAAAGTAAATCACTTCATAT+TGG - chr4_1:44876892-44876911 Msa0549700:intron 25.0%
! TTCATATTGTAAAATAGTGG+AGG - chr4_1:44877442-44877461 Msa0549700:CDS 25.0%
! CAAATTAAAGAGGTTTAGAT+GGG + chr4_1:44878194-44878213 None:intergenic 25.0%
! AAATCAACTTACATTGCATA+AGG + chr4_1:44878522-44878541 None:intergenic 25.0%
! CTTTCTTCTATAATAAGGAA+TGG + chr4_1:44878587-44878606 None:intergenic 25.0%
! CTTATTATAGAAGAAAGAGA+GGG - chr4_1:44878590-44878609 Msa0549700:CDS 25.0%
! TTATTATAGAAGAAAGAGAG+GGG - chr4_1:44878591-44878610 Msa0549700:CDS 25.0%
!!! ATAACTGTGACTTTGATTTT+TGG - chr4_1:44878650-44878669 Msa0549700:intron 25.0%
! TTCCAAATTTGCAAAAATCA+GGG + chr4_1:44878879-44878898 None:intergenic 25.0%
! TTTCCAAATTTGCAAAAATC+AGG + chr4_1:44878880-44878899 None:intergenic 25.0%
!! GACAAACATTTTACAATTTC+AGG + chr4_1:44878909-44878928 None:intergenic 25.0%
!! ACTAATTTGCCTATGAAATT+AGG - chr4_1:44879036-44879055 Msa0549700:CDS 25.0%
! TAAAAAAATTGTCCTTGAGA+TGG - chr4_1:44879088-44879107 Msa0549700:CDS 25.0%
! TTACGAAAGAAGTTAACTAA+GGG - chr4_1:44879210-44879229 Msa0549700:intron 25.0%
! GTATTTGTCAATTTGCAAAA+AGG - chr4_1:44879267-44879286 Msa0549700:intron 25.0%
! TATGTAAGATCAAAACTTTG+TGG - chr4_1:44879361-44879380 Msa0549700:intron 25.0%
!! AAGAAAAATTGATGGTAAGT+TGG + chr4_1:44879771-44879790 None:intergenic 25.0%
! AATAACGAATGAAGAATCTT+TGG + chr4_1:44879803-44879822 None:intergenic 25.0%
!!! ATATATTTTTTGGAGCGAAT+AGG - chr4_1:44880139-44880158 Msa0549700:CDS 25.0%
! TTGTTACTCAAATATGAAGA+TGG - chr4_1:44880204-44880223 Msa0549700:CDS 25.0%
!!! TATTTCTTGATGACTTTTTG+AGG - chr4_1:44880265-44880284 Msa0549700:CDS 25.0%
!! CCTTATTTAAATTGCAACAT+GGG + chr4_1:44880340-44880359 None:intergenic 25.0%
!! TCCTTATTTAAATTGCAACA+TGG + chr4_1:44880341-44880360 None:intergenic 25.0%
!! TTTTCTCATACTTAAAGAGT+GGG + chr4_1:44880427-44880446 None:intergenic 25.0%
!! ATTTTCTCATACTTAAAGAG+TGG + chr4_1:44880428-44880447 None:intergenic 25.0%
TATGTGTGGATATCATATCA+TGG + chr4_1:44875337-44875356 None:intergenic 30.0%
CCATTAGAATCTTCTATCAA+TGG + chr4_1:44875379-44875398 None:intergenic 30.0%
CCATTGATAGAAGATTCTAA+TGG - chr4_1:44875376-44875395 Msa0549700:three_prime_UTR 30.0%
TGAAATGTGAGTATTTGGAA+AGG + chr4_1:44875606-44875625 None:intergenic 30.0%
GTTCATGAAATGTGAGTATT+TGG + chr4_1:44875611-44875630 None:intergenic 30.0%
AATGCACATATCTTCATTCA+AGG - chr4_1:44875765-44875784 Msa0549700:exon 30.0%
!!! TAAAGCTTGGTTTTAAAGTC+AGG - chr4_1:44875990-44876009 Msa0549700:intron 30.0%
!!! AAAGCTTGGTTTTAAAGTCA+GGG - chr4_1:44875991-44876010 Msa0549700:intron 30.0%
GTAATAGAAAGGTTACTCTT+GGG - chr4_1:44876055-44876074 Msa0549700:intron 30.0%
! TTAAGTGGTTTGTCTAAACA+AGG - chr4_1:44876378-44876397 Msa0549700:intron 30.0%
! AACTATTAGTCATGTCACTT+CGG + chr4_1:44876404-44876423 None:intergenic 30.0%
GTTAAACAATTGAAGCTTGA+TGG - chr4_1:44876490-44876509 Msa0549700:intron 30.0%
! GTTGGATAACAGAATGTTTT+TGG - chr4_1:44876574-44876593 Msa0549700:intron 30.0%
TGAAATTGTGGAATGTGATT+TGG - chr4_1:44876622-44876641 Msa0549700:intron 30.0%
!! AATGCTGATTTAATCTGTTC+TGG + chr4_1:44876653-44876672 None:intergenic 30.0%
GAACAGATTAAATCAGCATT+AGG - chr4_1:44876653-44876672 Msa0549700:intron 30.0%
ACCTTATCGAATAGATTACA+TGG - chr4_1:44876739-44876758 Msa0549700:intron 30.0%
! TGTTTCAATGCTATTTGTGT+TGG - chr4_1:44876811-44876830 Msa0549700:intron 30.0%
! GTTTCAATGCTATTTGTGTT+GGG - chr4_1:44876812-44876831 Msa0549700:intron 30.0%
! TTCATATTGGTTACTTCACT+GGG - chr4_1:44876905-44876924 Msa0549700:intron 30.0%
! CAAAGTATCTTCAGTTGATA+GGG + chr4_1:44877268-44877287 None:intergenic 30.0%
! ACAAAGTATCTTCAGTTGAT+AGG + chr4_1:44877269-44877288 None:intergenic 30.0%
TCAACTGAAGATACTTTGTT+TGG - chr4_1:44877270-44877289 Msa0549700:intron 30.0%
! CAACTGAAGATACTTTGTTT+GGG - chr4_1:44877271-44877290 Msa0549700:intron 30.0%
! AACTGAAGATACTTTGTTTG+GGG - chr4_1:44877272-44877291 Msa0549700:intron 30.0%
TTTACATGATAAGTACCTGA+AGG + chr4_1:44877311-44877330 None:intergenic 30.0%
AACAGGAATGTTAAACTACT+AGG + chr4_1:44877611-44877630 None:intergenic 30.0%
CATTCCTGTTAATTGATGTA+CGG - chr4_1:44877621-44877640 Msa0549700:intron 30.0%
AAAACCGTACATCAATTAAC+AGG + chr4_1:44877628-44877647 None:intergenic 30.0%
! AATTGATGTACGGTTTTCTT+TGG - chr4_1:44877631-44877650 Msa0549700:intron 30.0%
GTCAACAAATATTAGCAATC+TGG + chr4_1:44877859-44877878 None:intergenic 30.0%
! GTTGACAGTCAATTTTTATG+TGG - chr4_1:44877873-44877892 Msa0549700:intron 30.0%
!! GTCAATTTTTATGTGGACTA+TGG - chr4_1:44877880-44877899 Msa0549700:intron 30.0%
!! AATTTTTATGTGGACTATGG+AGG - chr4_1:44877883-44877902 Msa0549700:intron 30.0%
! TTTATCTGTTTCTTGTCACT+AGG + chr4_1:44877984-44878003 None:intergenic 30.0%
TCTATTACTGGAATGTTACT+TGG + chr4_1:44878047-44878066 None:intergenic 30.0%
TGAGAAATGACATCTATTAC+TGG + chr4_1:44878059-44878078 None:intergenic 30.0%
ATCACCACAAAATTAGAAAG+CGG + chr4_1:44878135-44878154 None:intergenic 30.0%
CCAAATTAAAGAGGTTTAGA+TGG + chr4_1:44878195-44878214 None:intergenic 30.0%
CCATCTAAACCTCTTTAATT+TGG - chr4_1:44878192-44878211 Msa0549700:intron 30.0%
TGCTAAAGTAGTTCATAACA+AGG + chr4_1:44878247-44878266 None:intergenic 30.0%
GGAAAACAAACCACAAATTT+AGG + chr4_1:44878286-44878305 None:intergenic 30.0%
GCAGGTATATAAAATACACA+AGG + chr4_1:44878307-44878326 None:intergenic 30.0%
!! ATTGAGGAAGTATCAAGTAA+TGG - chr4_1:44878417-44878436 Msa0549700:intron 30.0%
CCTCTCTTTCTTCTATAATA+AGG + chr4_1:44878592-44878611 None:intergenic 30.0%
CCTTATTATAGAAGAAAGAG+AGG - chr4_1:44878589-44878608 Msa0549700:CDS 30.0%
TGGTAATTGATGAATGTACT+AGG - chr4_1:44878702-44878721 Msa0549700:CDS 30.0%
ATTGATGAATGTACTAGGTT+AGG - chr4_1:44878707-44878726 Msa0549700:CDS 30.0%
TAGTGCGAAATTTACTATTG+TGG - chr4_1:44878794-44878813 Msa0549700:intron 30.0%
! ACTGTAAACTTTTAGTGGTA+GGG - chr4_1:44878940-44878959 Msa0549700:intron 30.0%
ACATTGATGTAGGATTAACA+TGG + chr4_1:44879003-44879022 None:intergenic 30.0%
!! TTCATAGGCAAATTAGTCTT+TGG + chr4_1:44879033-44879052 None:intergenic 30.0%
TTTAGTGATTGCAATTGTGA+AGG + chr4_1:44879072-44879091 None:intergenic 30.0%
TAGTTAACTTCTTTCGTAAG+AGG + chr4_1:44879209-44879228 None:intergenic 30.0%
CTTACGAAAGAAGTTAACTA+AGG - chr4_1:44879209-44879228 Msa0549700:intron 30.0%
TTTGTCAATTTGCAAAAAGG+AGG - chr4_1:44879270-44879289 Msa0549700:intron 30.0%
TTGTCAATTTGCAAAAAGGA+GGG - chr4_1:44879271-44879290 Msa0549700:intron 30.0%
! GACCAAATCATACAATTTTG+AGG - chr4_1:44879302-44879321 Msa0549700:CDS 30.0%
GTCCTCAAAATTGTATGATT+TGG + chr4_1:44879307-44879326 None:intergenic 30.0%
!! AATCATACAATTTTGAGGAC+AGG - chr4_1:44879307-44879326 Msa0549700:CDS 30.0%
GTTGATACTGCATCAATATT+GGG + chr4_1:44879515-44879534 None:intergenic 30.0%
TGTTGATACTGCATCAATAT+TGG + chr4_1:44879516-44879535 None:intergenic 30.0%
GTTGATACTGCATCAATATT+GGG + chr4_1:44879515-44879534 None:intergenic 30.0%
TGTTGATACTGCATCAATAT+TGG + chr4_1:44879516-44879535 None:intergenic 30.0%
CTTGATACTGCATCAATATT+GGG + chr4_1:44879641-44879660 None:intergenic 30.0%
GAATCAACTTACATTGCAAA+AGG + chr4_1:44879749-44879768 None:intergenic 30.0%
ATTATAGAAGAGAGAAAGAG+AGG - chr4_1:44879820-44879839 Msa0549700:intron 30.0%
! CTTATGCAAATGAACTTTTC+AGG - chr4_1:44879956-44879975 Msa0549700:CDS 30.0%
!!! AAATGAACTTTTCAGGTATG+AGG - chr4_1:44879963-44879982 Msa0549700:CDS 30.0%
TCATCAAGAAATAAATGGCA+TGG + chr4_1:44880258-44880277 None:intergenic 30.0%
CCCATGTTGCAATTTAAATA+AGG - chr4_1:44880337-44880356 Msa0549700:five_prime_UTR 30.0%
ATGATATCCACACATAGCAA+AGG - chr4_1:44875341-44875360 Msa0549700:three_prime_UTR 35.0%
AGTATTTGGAAAGGTTGACA+TGG + chr4_1:44875597-44875616 None:intergenic 35.0%
GAGCTCTTATGATATTGCTA+CGG + chr4_1:44875669-44875688 None:intergenic 35.0%
ATCATAAGAGCTCAAGTTTC+AGG - chr4_1:44875676-44875695 Msa0549700:intron 35.0%
AATTAAGTTCAGTACTGTGG+TGG + chr4_1:44875904-44875923 None:intergenic 35.0%
GTGAATTAAGTTCAGTACTG+TGG + chr4_1:44875907-44875926 None:intergenic 35.0%
AGCTGTCATAGTTTCATTCA+GGG - chr4_1:44875961-44875980 Msa0549700:intron 35.0%
!! CATTGGTTCAGGTAATAGAA+AGG - chr4_1:44876044-44876063 Msa0549700:intron 35.0%
GGTAATAGAAAGGTTACTCT+TGG - chr4_1:44876054-44876073 Msa0549700:intron 35.0%
TTGGGTGGTGATTTAACTAA+TGG - chr4_1:44876073-44876092 Msa0549700:CDS 35.0%
! AGATTGTTTACGAGAGCATA+TGG - chr4_1:44876146-44876165 Msa0549700:CDS 35.0%
ATCGGAATAAACCAACAACT+AGG - chr4_1:44876221-44876240 Msa0549700:CDS 35.0%
GCTATAAACGCTTGATTAAG+TGG - chr4_1:44876363-44876382 Msa0549700:intron 35.0%
ATTGTTTAACACTCTGCACA+TGG + chr4_1:44876480-44876499 None:intergenic 35.0%
TTGACAAAATGTTGCTGTGT+TGG - chr4_1:44876556-44876575 Msa0549700:intron 35.0%
TGTAGAGAAGCTTGAAATTG+TGG - chr4_1:44876610-44876629 Msa0549700:intron 35.0%
TCAACTGTAATATGCACCAT+TGG - chr4_1:44876683-44876702 Msa0549700:intron 35.0%
GTCAAAAATTTCCTTCTCAC+TGG + chr4_1:44876711-44876730 None:intergenic 35.0%
GTAATCTATTCGATAAGGTC+CGG + chr4_1:44876738-44876757 None:intergenic 35.0%
GCCATGTAATCTATTCGATA+AGG + chr4_1:44876743-44876762 None:intergenic 35.0%
! CTTCATATTGGTTACTTCAC+TGG - chr4_1:44876904-44876923 Msa0549700:intron 35.0%
TCACTGGGAACAAACAAATT+TGG - chr4_1:44876920-44876939 Msa0549700:intron 35.0%
TCACAATGACTTACTGTGTA+TGG + chr4_1:44877109-44877128 None:intergenic 35.0%
! ACTGAAGATACTTTGTTTGG+GGG - chr4_1:44877273-44877292 Msa0549700:intron 35.0%
!! GTTGATAACTCTCTCAATTC+AGG - chr4_1:44877379-44877398 Msa0549700:CDS 35.0%
! TTTGCAAGAAGTTTTTCTGC+AGG + chr4_1:44877497-44877516 None:intergenic 35.0%
!! TATACGGAAGTACTTACCTT+GGG + chr4_1:44877551-44877570 None:intergenic 35.0%
!! ATATACGGAAGTACTTACCT+TGG + chr4_1:44877552-44877571 None:intergenic 35.0%
! TTGTTCTGTTTCTTTCTGAG+GGG + chr4_1:44877736-44877755 None:intergenic 35.0%
! GTTGTTCTGTTTCTTTCTGA+GGG + chr4_1:44877737-44877756 None:intergenic 35.0%
AGACAACAACTTCCTCAAAA+GGG - chr4_1:44878078-44878097 Msa0549700:CDS 35.0%
!! TAAGCCGCTTTCTAATTTTG+TGG - chr4_1:44878128-44878147 Msa0549700:CDS 35.0%
TCATAGCTGCCAAATTAAAG+AGG + chr4_1:44878204-44878223 None:intergenic 35.0%
!! TCTTTAATTTGGCAGCTATG+AGG - chr4_1:44878203-44878222 Msa0549700:intron 35.0%
! TACTTTAGCACTTTTATCCG+TGG - chr4_1:44878257-44878276 Msa0549700:intron 35.0%
! ACCACAAATTTAGGATACCA+CGG + chr4_1:44878277-44878296 None:intergenic 35.0%
!! TGAACTAGGAGGCTTTAAAT+CGG + chr4_1:44878337-44878356 None:intergenic 35.0%
! ATTGATGTAGTTGGTGCATT+AGG + chr4_1:44878366-44878385 None:intergenic 35.0%
GATGTGGATATTGATGTAGT+TGG + chr4_1:44878375-44878394 None:intergenic 35.0%
ATCAATATCCACATCTTCTG+TGG - chr4_1:44878380-44878399 Msa0549700:CDS 35.0%
TCAATATCCACATCTTCTGT+GGG - chr4_1:44878381-44878400 Msa0549700:CDS 35.0%
ACTTGATACTTCCTCAATCT+TGG + chr4_1:44878415-44878434 None:intergenic 35.0%
TACATTGCATAAGGTGAAAG+TGG + chr4_1:44878513-44878532 None:intergenic 35.0%
!! AATAAGGAATGGAGAGCATT+TGG + chr4_1:44878576-44878595 None:intergenic 35.0%
AAGTGAGTGAGTAAGTCTTA+TGG - chr4_1:44878682-44878701 Msa0549700:intron 35.0%
!! TGATTAAGCCAAAAGCATCA+AGG - chr4_1:44878748-44878767 Msa0549700:CDS 35.0%
TACTGATGCTTACAATTTCG+AGG + chr4_1:44878848-44878867 None:intergenic 35.0%
! GTCCCTGATTTTTGCAAATT+TGG - chr4_1:44878874-44878893 Msa0549700:CDS 35.0%
! GTCTCACTGTAAACTTTTAG+TGG - chr4_1:44878935-44878954 Msa0549700:intron 35.0%
! CACTGTAAACTTTTAGTGGT+AGG - chr4_1:44878939-44878958 Msa0549700:intron 35.0%
! CTGTAAACTTTTAGTGGTAG+GGG - chr4_1:44878941-44878960 Msa0549700:intron 35.0%
TGACATGTTAACTGAATACG+TGG - chr4_1:44878972-44878991 Msa0549700:intron 35.0%
! CTCTGAAGACCTAATTTCAT+AGG + chr4_1:44879048-44879067 None:intergenic 35.0%
ATGAAATTTAGGCCATCTCA+AGG + chr4_1:44879103-44879122 None:intergenic 35.0%
AAGATCAAAACTTTGTGGAC+AGG - chr4_1:44879366-44879385 Msa0549700:intron 35.0%
TTCGTGGTATCAAAACTTTG+TGG - chr4_1:44879399-44879418 Msa0549700:intron 35.0%
!! GGTTTGTTTTTCTTGTGTAC+AGG - chr4_1:44879420-44879439 Msa0549700:intron 35.0%
!! GAAGATGTATTTGGTGCATT+AGG + chr4_1:44879479-44879498 None:intergenic 35.0%
AAATACATCTTCTGTGGGTT+CGG - chr4_1:44879487-44879506 Msa0549700:intron 35.0%
ATGGATACTGCATCAGTATT+GGG + chr4_1:44879557-44879576 None:intergenic 35.0%
TATGGATACTGCATCAGTAT+TGG + chr4_1:44879558-44879577 None:intergenic 35.0%
GCTTGATACTGCATCAATAT+TGG + chr4_1:44879642-44879661 None:intergenic 35.0%
ATTGATGCAGTATCAAGCAA+TGG - chr4_1:44879644-44879663 Msa0549700:intron 35.0%
TACATTGCAAAAGGTGAAAG+TGG + chr4_1:44879740-44879759 None:intergenic 35.0%
ACCATCCGATATCAATCAAA+CGG + chr4_1:44879903-44879922 None:intergenic 35.0%
GAATCTTCTATCAATGGCAG+TGG + chr4_1:44875373-44875392 None:intergenic 40.0%
! GGAAGTATGAACTCTTTGGT+GGG + chr4_1:44875476-44875495 None:intergenic 40.0%
! TGGAAGTATGAACTCTTTGG+TGG + chr4_1:44875477-44875496 None:intergenic 40.0%
! GGATGGAAGTATGAACTCTT+TGG + chr4_1:44875480-44875499 None:intergenic 40.0%
CATTGGTATGGCTTAAAGGA+TGG + chr4_1:44875497-44875516 None:intergenic 40.0%
CATCCTTTAAGCCATACCAA+TGG - chr4_1:44875495-44875514 Msa0549700:three_prime_UTR 40.0%
TTGGAATCTTTCTTCTCAGC+AGG + chr4_1:44875807-44875826 None:intergenic 40.0%
TGCTGAGAAGAAAGATTCCA+AGG - chr4_1:44875806-44875825 Msa0549700:CDS 40.0%
! AAGTTGGTTCAAGAACAGTC+AGG - chr4_1:44875865-44875884 Msa0549700:intron 40.0%
GAGCTGTCATAGTTTCATTC+AGG - chr4_1:44875960-44875979 Msa0549700:intron 40.0%
TTCAGGGAGCTTATAAAGCT+TGG - chr4_1:44875977-44875996 Msa0549700:intron 40.0%
ATAGAAAGGTTACTCTTGGG+TGG - chr4_1:44876058-44876077 Msa0549700:intron 40.0%
TCTTATTCTCGTACGCTCAT+CGG - chr4_1:44876203-44876222 Msa0549700:CDS 40.0%
TGATAAGCTATCCTGAGCTT+AGG + chr4_1:44876247-44876266 None:intergenic 40.0%
! TTGAAGCTTGATGGTACAAG+TGG - chr4_1:44876499-44876518 Msa0549700:intron 40.0%
TTTCAAGCTTCTCTACAGCT+GGG + chr4_1:44876607-44876626 None:intergenic 40.0%
ATTTCAAGCTTCTCTACAGC+TGG + chr4_1:44876608-44876627 None:intergenic 40.0%
!! AGCATCAACTAGGTTTTTGG+TGG + chr4_1:44876765-44876784 None:intergenic 40.0%
! ACCAAAAACCTAGTTGATGC+TGG - chr4_1:44876764-44876783 Msa0549700:intron 40.0%
! ACCAGCATCAACTAGGTTTT+TGG + chr4_1:44876768-44876787 None:intergenic 40.0%
TCTTGTTACCAGCATCAACT+AGG + chr4_1:44876775-44876794 None:intergenic 40.0%
GGTAACAAGAGCTTTCGTTA+TGG - chr4_1:44876785-44876804 Msa0549700:intron 40.0%
!! TATTTTGGGGAGTCTTGTGT+TGG - chr4_1:44877044-44877063 Msa0549700:intron 40.0%
! AGTCTTGTGTTGGAAAAGGA+AGG - chr4_1:44877054-44877073 Msa0549700:intron 40.0%
! GACACTCTTTTCAGATAGTG+AGG - chr4_1:44877190-44877209 Msa0549700:intron 40.0%
GTTTCCTTGTAAGCATCAGT+AGG + chr4_1:44877234-44877253 None:intergenic 40.0%
!! AATTCAGGTTGCTGAACTCA+TGG - chr4_1:44877394-44877413 Msa0549700:CDS 40.0%
! AGTTTTTCTGCAGGTGTCAA+TGG + chr4_1:44877488-44877507 None:intergenic 40.0%
ATGTTAAACTACTAGGCAGG+AGG + chr4_1:44877604-44877623 None:intergenic 40.0%
GGAATGTTAAACTACTAGGC+AGG + chr4_1:44877607-44877626 None:intergenic 40.0%
! GATGTACGGTTTTCTTTGGA+AGG - chr4_1:44877635-44877654 Msa0549700:intron 40.0%
! TCTTTCTGAGGGGAAATACT+AGG + chr4_1:44877726-44877745 None:intergenic 40.0%
! GGTTGTTCTGTTTCTTTCTG+AGG + chr4_1:44877738-44877757 None:intergenic 40.0%
! TCTTTCTGAGGAGTAATGCT+AGG + chr4_1:44877780-44877799 None:intergenic 40.0%
! GGTTGTTCTGTTTCTTTCTG+AGG + chr4_1:44877738-44877757 None:intergenic 40.0%
TACGCAGTATAAGGAGAAAG+CGG + chr4_1:44877834-44877853 None:intergenic 40.0%
! AATCTGGCTTACGCAGTATA+AGG + chr4_1:44877843-44877862 None:intergenic 40.0%
TGGAGGCCAAATAACTAAGT+TGG - chr4_1:44877900-44877919 Msa0549700:intron 40.0%
CAGACAACAACTTCCTCAAA+AGG - chr4_1:44878077-44878096 Msa0549700:CDS 40.0%
AACAACTTCCTCAAAAGGGA+AGG - chr4_1:44878082-44878101 Msa0549700:CDS 40.0%
! GTTCATAACAAGGTATCTGC+AGG + chr4_1:44878237-44878256 None:intergenic 40.0%
TCCGTGGTATCCTAAATTTG+TGG - chr4_1:44878273-44878292 Msa0549700:CDS 40.0%
CTTTAAATCGGGATATCTGC+AGG + chr4_1:44878325-44878344 None:intergenic 40.0%
!! GAACTAGGAGGCTTTAAATC+GGG + chr4_1:44878336-44878355 None:intergenic 40.0%
TATAGAAGAAAGAGAGGGGA+TGG - chr4_1:44878595-44878614 Msa0549700:intron 40.0%
! CCATGAATCCTTGATGCTTT+TGG + chr4_1:44878759-44878778 None:intergenic 40.0%
!! CCAAAAGCATCAAGGATTCA+TGG - chr4_1:44878756-44878775 Msa0549700:intron 40.0%
!! AGGCAAATTAGTCTTTGGTG+TGG + chr4_1:44879028-44879047 None:intergenic 40.0%
CAAATTAGCTCCTAGTGAGT+TGG - chr4_1:44879126-44879145 Msa0549700:CDS 40.0%
!! TGCACTTTGAAACCACATCA+AGG + chr4_1:44879152-44879171 None:intergenic 40.0%
!! GAACTAGGAGGCTTTAAATC+AGG + chr4_1:44878336-44878355 None:intergenic 40.0%
!! GTATTTGGTGCATTAGGAGA+TGG + chr4_1:44879473-44879492 None:intergenic 40.0%
TGCACCAAATACATCTTCTG+TGG - chr4_1:44879481-44879500 Msa0549700:intron 40.0%
GCACCAAATACATCTTCTGT+GGG - chr4_1:44879482-44879501 Msa0549700:intron 40.0%
GAACCCACAGAAGATGTATT+TGG + chr4_1:44879488-44879507 None:intergenic 40.0%
TGCAGTATCAACATCTTCTG+TGG - chr4_1:44879523-44879542 Msa0549700:intron 40.0%
GCAGTATCAACATCTTCTGT+GGG - chr4_1:44879524-44879543 Msa0549700:intron 40.0%
TATCAACATCTTCTGTGGGT+GGG - chr4_1:44879528-44879547 Msa0549700:intron 40.0%
ATCCATATCTTCTGTGAGTG+AGG - chr4_1:44879571-44879590 Msa0549700:intron 40.0%
TGCAGTATCAACATCTTCTG+TGG - chr4_1:44879523-44879542 Msa0549700:intron 40.0%
GCAGTATCAACATCTTCTGT+GGG - chr4_1:44879524-44879543 Msa0549700:intron 40.0%
TATCAACATCTTCTGTGGGT+GGG - chr4_1:44879528-44879547 Msa0549700:intron 40.0%
TGTATCTTCCACTGAGAGTT+GGG + chr4_1:44879675-44879694 None:intergenic 40.0%
GGAAGCCGTTTGATTGATAT+CGG - chr4_1:44879895-44879914 Msa0549700:intron 40.0%
TGTCTGATTCCATATGAAGG+AGG + chr4_1:44880042-44880061 None:intergenic 40.0%
CCTTGTCTGATTCCATATGA+AGG + chr4_1:44880045-44880064 None:intergenic 40.0%
CCTTCATATGGAATCAGACA+AGG - chr4_1:44880042-44880061 Msa0549700:intron 40.0%
ATTATGCACACTACGTACAC+TGG - chr4_1:44880103-44880122 Msa0549700:intron 40.0%
AGTTTATGTAGCAACCCACA+TGG - chr4_1:44880177-44880196 Msa0549700:CDS 40.0%
TGAGTAACAATCCTCCATGT+GGG + chr4_1:44880194-44880213 None:intergenic 40.0%
TTGAGTAACAATCCTCCATG+TGG + chr4_1:44880195-44880214 None:intergenic 40.0%
GATGGAAGCAACTATGTGAA+TGG - chr4_1:44880222-44880241 Msa0549700:CDS 40.0%
! GTGCAATCCTTTGCTATGTG+TGG + chr4_1:44875351-44875370 None:intergenic 45.0%
CCTCCATTGGTATGGCTTAA+AGG + chr4_1:44875501-44875520 None:intergenic 45.0%
CCTTTAAGCCATACCAATGG+AGG - chr4_1:44875498-44875517 Msa0549700:three_prime_UTR 45.0%
TGAGAAAGCCTCCATTGGTA+TGG + chr4_1:44875509-44875528 None:intergenic 45.0%
TCTCTACGTGTTAGAGAGGA+GGG + chr4_1:44875550-44875569 None:intergenic 45.0%
!! TGGAAGGTGTTGTGGTGAAA+GGG + chr4_1:44875636-44875655 None:intergenic 45.0%
ATTGCTACGGATTCTACTCC+TGG + chr4_1:44875656-44875675 None:intergenic 45.0%
! GAGCTCAAGTTTCAGGTGAT+AGG - chr4_1:44875683-44875702 Msa0549700:intron 45.0%
!! GTATTTGTTGCTGGTGCTAC+TGG - chr4_1:44875840-44875859 Msa0549700:intron 45.0%
!!! CTTGGTTTTAAAGTCAGGGC+TGG - chr4_1:44875995-44876014 Msa0549700:intron 45.0%
TTAAAGTCAGGGCTGGAGTA+AGG - chr4_1:44876002-44876021 Msa0549700:intron 45.0%
! AAGCTTGATGGTACAAGTGG+AGG - chr4_1:44876502-44876521 Msa0549700:intron 45.0%
! AGCTTGATGGTACAAGTGGA+GGG - chr4_1:44876503-44876522 Msa0549700:intron 45.0%
ACTCACTTGAGAATAGCTGC+AGG + chr4_1:44876950-44876969 None:intergenic 45.0%
! TCTTTTCAGATAGTGAGGCC+TGG - chr4_1:44877195-44877214 Msa0549700:intron 45.0%
AAGTTCCGGATTCTTAGCCA+TGG + chr4_1:44877423-44877442 None:intergenic 45.0%
!! CGGTTTTCTTTGGAAGGTAC+AGG - chr4_1:44877641-44877660 Msa0549700:intron 45.0%
TTACTGACAGCTGCAGTATC+TGG + chr4_1:44877669-44877688 None:intergenic 45.0%
AACAGAACAACCAGAACCAG+TGG - chr4_1:44877746-44877765 Msa0549700:CDS 45.0%
AACAGAACAACCGAAACCAG+TGG - chr4_1:44877800-44877819 Msa0549700:CDS 45.0%
TTCTTGTCACTAGGCTTGAC+TGG + chr4_1:44877975-44877994 None:intergenic 45.0%
GCATCTGAAGAACTAGGTGT+TGG + chr4_1:44878023-44878042 None:intergenic 45.0%
! CTTGGAGCATCTGAAGAACT+AGG + chr4_1:44878029-44878048 None:intergenic 45.0%
! AAGAGACTCCTTCCCTTTTG+AGG + chr4_1:44878093-44878112 None:intergenic 45.0%
TTAGGAGATGGTGAACTAGG+AGG + chr4_1:44878348-44878367 None:intergenic 45.0%
GCATTAGGAGATGGTGAACT+AGG + chr4_1:44878351-44878370 None:intergenic 45.0%
! GTAGTTGGTGCATTAGGAGA+TGG + chr4_1:44878360-44878379 None:intergenic 45.0%
CTTCCACTGAAAGTTGAGCT+GGG + chr4_1:44878443-44878462 None:intergenic 45.0%
TCTTCCACTGAAAGTTGAGC+TGG + chr4_1:44878444-44878463 None:intergenic 45.0%
AGATTCTGTCCATCATCCTG+CGG + chr4_1:44878471-44878490 None:intergenic 45.0%
! GGTGAAAGTGGTCTTGACTT+TGG + chr4_1:44878501-44878520 None:intergenic 45.0%
GATAGCTGTTCAGGACACAT+TGG - chr4_1:44878621-44878640 Msa0549700:intron 45.0%
GACAGGTTTAGCACAATTCG+TGG - chr4_1:44879383-44879402 Msa0549700:intron 45.0%
TTAGGAGATGGTGAACTAGG+AGG + chr4_1:44878348-44878367 None:intergenic 45.0%
GCATTAGGAGATGGTGAACT+AGG + chr4_1:44878351-44878370 None:intergenic 45.0%
GTATCAACATCTTCTGTGGG+TGG - chr4_1:44879527-44879546 Msa0549700:intron 45.0%
ATCAACATCTTCTGTGGGTG+GGG - chr4_1:44879529-44879548 Msa0549700:intron 45.0%
CACCTCACTCACAGAAGATA+TGG + chr4_1:44879576-44879595 None:intergenic 45.0%
GTATCAACATCTTCTGTGGG+TGG - chr4_1:44879527-44879546 Msa0549700:intron 45.0%
ATCAACATCTTCTGTGGGTG+GGG - chr4_1:44879529-44879548 Msa0549700:intron 45.0%
GTGTATCTTCCACTGAGAGT+TGG + chr4_1:44879676-44879695 None:intergenic 45.0%
CTCAGTGGAAGATACACCAA+AGG - chr4_1:44879679-44879698 Msa0549700:intron 45.0%
AGTGGAAGATACACCAAAGG+AGG - chr4_1:44879682-44879701 Msa0549700:intron 45.0%
GAAGATACACCAAAGGAGGA+TGG - chr4_1:44879686-44879705 Msa0549700:intron 45.0%
! GTGGTCTTGACTTTGGTTCA+TGG + chr4_1:44879721-44879740 None:intergenic 45.0%
! GGTGAAAGTGGTCTTGACTT+TGG + chr4_1:44878501-44878520 None:intergenic 45.0%
GCCGTTTGATTGATATCGGA+TGG - chr4_1:44879899-44879918 Msa0549700:intron 45.0%
GATTGTCTGAAGGAAGGTGA+TGG + chr4_1:44880009-44880028 None:intergenic 45.0%
ACCTTCCTTCAGACAATCCT+AGG - chr4_1:44880011-44880030 Msa0549700:intron 45.0%
TCCTAGGATTGTCTGAAGGA+AGG + chr4_1:44880015-44880034 None:intergenic 45.0%
CAGTTCCTAGGATTGTCTGA+AGG + chr4_1:44880019-44880038 None:intergenic 45.0%
ATATGAAGGAGGCAGTTCCT+AGG + chr4_1:44880031-44880050 None:intergenic 45.0%
TAGGAACTGCCTCCTTCATA+TGG - chr4_1:44880030-44880049 Msa0549700:intron 45.0%
TTATGTAGCAACCCACATGG+AGG - chr4_1:44880180-44880199 Msa0549700:CDS 45.0%
GTGAGTGAGAAAGCCTCCAT+TGG + chr4_1:44875514-44875533 None:intergenic 50.0%
AGAGGAGGGAATGGTAGTTG+AGG + chr4_1:44875536-44875555 None:intergenic 50.0%
ACGTGTTAGAGAGGAGGGAA+TGG + chr4_1:44875545-44875564 None:intergenic 50.0%
CTCTCTACGTGTTAGAGAGG+AGG + chr4_1:44875551-44875570 None:intergenic 50.0%
CTCCTCTCTAACACGTAGAG+AGG - chr4_1:44875549-44875568 Msa0549700:three_prime_UTR 50.0%
AGCCTCTCTACGTGTTAGAG+AGG + chr4_1:44875554-44875573 None:intergenic 50.0%
GCTGCAGCTGTTAAACCTTC+TGG - chr4_1:44875571-44875590 Msa0549700:three_prime_UTR 50.0%
GAAAGGTTGACATGGCCAGA+AGG + chr4_1:44875589-44875608 None:intergenic 50.0%
!! CTGGAAGGTGTTGTGGTGAA+AGG + chr4_1:44875637-44875656 None:intergenic 50.0%
CTTTCACCACAACACCTTCC+AGG - chr4_1:44875635-44875654 Msa0549700:three_prime_UTR 50.0%
!! TCTACTCCTGGAAGGTGTTG+TGG + chr4_1:44875644-44875663 None:intergenic 50.0%
CTACGGATTCTACTCCTGGA+AGG + chr4_1:44875652-44875671 None:intergenic 50.0%
!! GCTGGTGCTACTGGAAAAGT+TGG - chr4_1:44875849-44875868 Msa0549700:intron 50.0%
CTGAGCTTAGGCCTAGTTGT+TGG + chr4_1:44876235-44876254 None:intergenic 50.0%
CAACAACTAGGCCTAAGCTC+AGG - chr4_1:44876233-44876252 Msa0549700:CDS 50.0%
TTCCTTCTCACTGGCACCAA+TGG + chr4_1:44876702-44876721 None:intergenic 50.0%
! GGGGAGTCTTGTGTTGGAAA+AGG - chr4_1:44877050-44877069 Msa0549700:intron 50.0%
GTGTTGGAAAAGGAAGGCAG+AGG - chr4_1:44877060-44877079 Msa0549700:intron 50.0%
!! GAGGAAGCATTGCTAGCAAG+TGG - chr4_1:44877079-44877098 Msa0549700:intron 50.0%
TTTCAGATAGTGAGGCCTGG+AGG - chr4_1:44877198-44877217 Msa0549700:intron 50.0%
GAGGCCTACTGATGCTTACA+AGG - chr4_1:44877227-44877246 Msa0549700:intron 50.0%
GGGACAAGTGTCAAACCTTC+AGG - chr4_1:44877293-44877312 Msa0549700:CDS 50.0%
TGTCAATGGCGCAGTTGTCT+CGG + chr4_1:44877474-44877493 None:intergenic 50.0%
!! GGAATGTAAGGGCGTTGAGA+AGG + chr4_1:44877524-44877543 None:intergenic 50.0%
CCTTGGGCGAAGGAATGTAA+GGG + chr4_1:44877535-44877554 None:intergenic 50.0%
ACCTTGGGCGAAGGAATGTA+AGG + chr4_1:44877536-44877555 None:intergenic 50.0%
! GAAGTACTTACCTTGGGCGA+AGG + chr4_1:44877545-44877564 None:intergenic 50.0%
TGTCAGTAATCCAGCTCCCT+CGG - chr4_1:44877680-44877699 Msa0549700:intron 50.0%
!!! GGCTGTTTTGCCACTGGTTT+CGG + chr4_1:44877813-44877832 None:intergenic 50.0%
TTGACTGGAGAAGGGGATGA+CGG + chr4_1:44877960-44877979 None:intergenic 50.0%
ACTAGGCTTGACTGGAGAAG+GGG + chr4_1:44877967-44877986 None:intergenic 50.0%
CACTAGGCTTGACTGGAGAA+GGG + chr4_1:44877968-44877987 None:intergenic 50.0%
TCACTAGGCTTGACTGGAGA+AGG + chr4_1:44877969-44877988 None:intergenic 50.0%
AAAGCGGCTTACGCTGCAAA+AGG + chr4_1:44878119-44878138 None:intergenic 50.0%
ATCCACATCTTCTGTGGGTG+AGG - chr4_1:44878386-44878405 Msa0549700:CDS 50.0%
ATTCTGTCCATCATCCTGCG+GGG + chr4_1:44878469-44878488 None:intergenic 50.0%
GATTCTGTCCATCATCCTGC+GGG + chr4_1:44878470-44878489 None:intergenic 50.0%
! GTGGTCTTGACTTTGGCTCA+TGG + chr4_1:44878494-44878513 None:intergenic 50.0%
GGATGGTGAGATAGCTGTTC+AGG - chr4_1:44878612-44878631 Msa0549700:intron 50.0%
TGGTGTGGCGACATTGATGT+AGG + chr4_1:44879013-44879032 None:intergenic 50.0%
CACATCAAGGCCAACTCACT+AGG + chr4_1:44879139-44879158 None:intergenic 50.0%
!! CTAGTGAGTTGGCCTTGATG+TGG - chr4_1:44879137-44879156 Msa0549700:CDS 50.0%
TACACCAAAGGAGGATGGAC+AGG - chr4_1:44879691-44879710 Msa0549700:intron 50.0%
ACACCAAAGGAGGATGGACA+GGG - chr4_1:44879692-44879711 Msa0549700:intron 50.0%
TCCTTGACCTTGGGGAATTC+AGG + chr4_1:44879848-44879867 None:intergenic 50.0%
TGCAGGATTCCTTGACCTTG+GGG + chr4_1:44879856-44879875 None:intergenic 50.0%
CTGCAGGATTCCTTGACCTT+GGG + chr4_1:44879857-44879876 None:intergenic 50.0%
ACTGCAGGATTCCTTGACCT+TGG + chr4_1:44879858-44879877 None:intergenic 50.0%
CAGTCATGCAGTCACTGCAT+TGG - chr4_1:44879874-44879893 Msa0549700:intron 50.0%
! AAGGAAGGTGATGGTGATGC+AGG + chr4_1:44880000-44880019 None:intergenic 50.0%
!! GTAAGGAGTGCTCAGAGAGC+TGG - chr4_1:44876019-44876038 Msa0549700:intron 55.0%
TGCTCAGAGAGCTGGTGCAT+TGG - chr4_1:44876027-44876046 Msa0549700:intron 55.0%
!! GAGAGCTGGTGCATTGGTTC+AGG - chr4_1:44876033-44876052 Msa0549700:intron 55.0%
GGTACAAGTGGAGGGAGTGA+AGG - chr4_1:44876511-44876530 Msa0549700:intron 55.0%
!! CACCATTGGTGCCAGTGAGA+AGG - chr4_1:44876697-44876716 Msa0549700:intron 55.0%
TGCTGAACTCATGGCAGCCA+TGG - chr4_1:44877403-44877422 Msa0549700:CDS 55.0%
GGCAGCCATGGCTAAGAATC+CGG - chr4_1:44877415-44877434 Msa0549700:CDS 55.0%
CCCTTACATTCCTTCGCCCA+AGG - chr4_1:44877532-44877551 Msa0549700:intron 55.0%
AGCTCCCTCGGCTAATGTCA+CGG - chr4_1:44877692-44877711 Msa0549700:CDS 55.0%
GCTTCCGTGACATTAGCCGA+GGG + chr4_1:44877699-44877718 None:intergenic 55.0%
TGCTTCCGTGACATTAGCCG+AGG + chr4_1:44877700-44877719 None:intergenic 55.0%
ATGCTAGGCACTTCTGCCAC+TGG + chr4_1:44877765-44877784 None:intergenic 55.0%
!! GAAAGCGGCTGTTTTGCCAC+TGG + chr4_1:44877819-44877838 None:intergenic 55.0%
CACCTCACCCACAGAAGATG+TGG + chr4_1:44878391-44878410 None:intergenic 55.0%
CACATCTTCTGTGGGTGAGG+TGG - chr4_1:44878389-44878408 Msa0549700:CDS 55.0%
TGGCCCAGCTCAACTTTCAG+TGG - chr4_1:44878437-44878456 Msa0549700:intron 55.0%
TCTTCCACTGAGAGTTGGGC+TGG + chr4_1:44879671-44879690 None:intergenic 55.0%
AGACCCTGTCCATCCTCCTT+TGG + chr4_1:44879698-44879717 None:intergenic 55.0%
AGAGGAGCCTGAATTCCCCA+AGG - chr4_1:44879838-44879857 Msa0549700:intron 55.0%
GCCTGAATTCCCCAAGGTCA+AGG - chr4_1:44879844-44879863 Msa0549700:intron 55.0%
TGCAGTGACTGCATGACTGC+AGG + chr4_1:44879873-44879892 None:intergenic 55.0%
! GAAGGTGATGGTGATGCAGG+AGG + chr4_1:44879997-44880016 None:intergenic 55.0%
ATTACACCGAAGCGCAGCGC+AGG - chr4_1:44877134-44877153 Msa0549700:intron 60.0%
TTACACCGAAGCGCAGCGCA+GGG - chr4_1:44877135-44877154 Msa0549700:intron 60.0%
GATAGTGAGGCCTGGAGGCA+TGG - chr4_1:44877203-44877222 Msa0549700:intron 60.0%
GTGACATTAGCCGAGGGAGC+TGG + chr4_1:44877693-44877712 None:intergenic 60.0%
!! GGCACTTCTGCCACTGGTTC+TGG + chr4_1:44877759-44877778 None:intergenic 60.0%
! ACTGGAGAAGGGGATGACGG+TGG + chr4_1:44877957-44877976 None:intergenic 60.0%
GGGTGAGGTGGCCAAGATTG+AGG - chr4_1:44878401-44878420 Msa0549700:intron 60.0%
TTCAGTGGAAGACACCCCGC+AGG - chr4_1:44878452-44878471 Msa0549700:intron 60.0%
GAAGACACCCCGCAGGATGA+TGG - chr4_1:44878459-44878478 Msa0549700:intron 60.0%
TGGACCAGCCCAACTCTCAG+TGG - chr4_1:44879664-44879683 Msa0549700:intron 60.0%
TAGGACCCTGCGCTGCGCTT+CGG + chr4_1:44877143-44877162 None:intergenic 65.0%
! TGAGGCCTGGAGGCATGGAG+AGG - chr4_1:44877208-44877227 Msa0549700:intron 65.0%
GTAGGCCTCTCCATGCCTCC+AGG + chr4_1:44877216-44877235 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 44875329 44880487 44875329 ID=Msa0549700;Name=Msa0549700
chr4_1 mRNA 44875329 44880487 44875329 ID=Msa0549700-mRNA-1;Parent=Msa0549700;Name=Msa0549700-mRNA-1;_AED=0.13;_eAED=0.13;_QI=185|1|1|1|0.86|0.81|16|321|650
chr4_1 exon 44875329 44875437 44875329 ID=Msa0549700-mRNA-1:exon:11737;Parent=Msa0549700-mRNA-1
chr4_1 exon 44875475 44875655 44875475 ID=Msa0549700-mRNA-1:exon:11736;Parent=Msa0549700-mRNA-1
chr4_1 exon 44875753 44875838 44875753 ID=Msa0549700-mRNA-1:exon:11735;Parent=Msa0549700-mRNA-1
chr4_1 exon 44876060 44876374 44876060 ID=Msa0549700-mRNA-1:exon:11734;Parent=Msa0549700-mRNA-1
chr4_1 exon 44877287 44877487 44877287 ID=Msa0549700-mRNA-1:exon:11733;Parent=Msa0549700-mRNA-1
chr4_1 exon 44877690 44877878 44877690 ID=Msa0549700-mRNA-1:exon:11732;Parent=Msa0549700-mRNA-1
chr4_1 exon 44877966 44878159 44877966 ID=Msa0549700-mRNA-1:exon:11731;Parent=Msa0549700-mRNA-1
chr4_1 exon 44878263 44878415 44878263 ID=Msa0549700-mRNA-1:exon:11730;Parent=Msa0549700-mRNA-1
chr4_1 exon 44878502 44878612 44878502 ID=Msa0549700-mRNA-1:exon:11729;Parent=Msa0549700-mRNA-1
chr4_1 exon 44878702 44878774 44878702 ID=Msa0549700-mRNA-1:exon:11728;Parent=Msa0549700-mRNA-1
chr4_1 exon 44878853 44878934 44878853 ID=Msa0549700-mRNA-1:exon:11727;Parent=Msa0549700-mRNA-1
chr4_1 exon 44879031 44879207 44879031 ID=Msa0549700-mRNA-1:exon:11726;Parent=Msa0549700-mRNA-1
chr4_1 exon 44879284 44879329 44879284 ID=Msa0549700-mRNA-1:exon:11725;Parent=Msa0549700-mRNA-1
chr4_1 exon 44879762 44879834 44879762 ID=Msa0549700-mRNA-1:exon:11724;Parent=Msa0549700-mRNA-1
chr4_1 exon 44879930 44880029 44879930 ID=Msa0549700-mRNA-1:exon:11723;Parent=Msa0549700-mRNA-1
chr4_1 exon 44880119 44880487 44880119 ID=Msa0549700-mRNA-1:exon:11722;Parent=Msa0549700-mRNA-1
chr4_1 five_prime_UTR 44880303 44880487 44880303 ID=Msa0549700-mRNA-1:five_prime_utr;Parent=Msa0549700-mRNA-1
chr4_1 CDS 44880119 44880302 44880119 ID=Msa0549700-mRNA-1:cds;Parent=Msa0549700-mRNA-1
chr4_1 CDS 44879930 44880029 44879930 ID=Msa0549700-mRNA-1:cds;Parent=Msa0549700-mRNA-1
chr4_1 CDS 44879762 44879834 44879762 ID=Msa0549700-mRNA-1:cds;Parent=Msa0549700-mRNA-1
chr4_1 CDS 44879284 44879329 44879284 ID=Msa0549700-mRNA-1:cds;Parent=Msa0549700-mRNA-1
chr4_1 CDS 44879031 44879207 44879031 ID=Msa0549700-mRNA-1:cds;Parent=Msa0549700-mRNA-1
chr4_1 CDS 44878853 44878934 44878853 ID=Msa0549700-mRNA-1:cds;Parent=Msa0549700-mRNA-1
chr4_1 CDS 44878702 44878774 44878702 ID=Msa0549700-mRNA-1:cds;Parent=Msa0549700-mRNA-1
chr4_1 CDS 44878502 44878612 44878502 ID=Msa0549700-mRNA-1:cds;Parent=Msa0549700-mRNA-1
chr4_1 CDS 44878263 44878415 44878263 ID=Msa0549700-mRNA-1:cds;Parent=Msa0549700-mRNA-1
chr4_1 CDS 44877966 44878159 44877966 ID=Msa0549700-mRNA-1:cds;Parent=Msa0549700-mRNA-1
chr4_1 CDS 44877690 44877878 44877690 ID=Msa0549700-mRNA-1:cds;Parent=Msa0549700-mRNA-1
chr4_1 CDS 44877287 44877487 44877287 ID=Msa0549700-mRNA-1:cds;Parent=Msa0549700-mRNA-1
chr4_1 CDS 44876060 44876374 44876060 ID=Msa0549700-mRNA-1:cds;Parent=Msa0549700-mRNA-1
chr4_1 CDS 44875784 44875838 44875784 ID=Msa0549700-mRNA-1:cds;Parent=Msa0549700-mRNA-1
chr4_1 three_prime_UTR 44875753 44875783 44875753 ID=Msa0549700-mRNA-1:three_prime_utr;Parent=Msa0549700-mRNA-1
chr4_1 three_prime_UTR 44875475 44875655 44875475 ID=Msa0549700-mRNA-1:three_prime_utr;Parent=Msa0549700-mRNA-1
chr4_1 three_prime_UTR 44875329 44875437 44875329 ID=Msa0549700-mRNA-1:three_prime_utr;Parent=Msa0549700-mRNA-1
Gene Sequence

>Msa0549700

ATGGAGGCTTTCTCACTCACCTCAACTACCATTCCCTCCTCTCTAACACGTAGAGAGGCTGCAGCTGTTAAACCTTCTGGCCATGTCAACCTTTCCAAATACTCACATTTCATGAACTACCCTTTCACCACAACACCTTCCAGGAGTAGAATCCGTAGCAATATCATAAGAGCTCAAGTTTCAGGTTCAACAAAATCTAGTCCTGCTGAGAAGAAAGATTCCAAGGATGATAATTTAGTATTTGTTGCTGGTGCTACTGGAAAAGTTGGTTCAAGAACAGTCAGGGAGCTTATAAAGCTTGGTTTTAAAGTCAGGGCTGGAGTAAGGAGTGCTCAGAGAGCTGGTGCATTGGTTCAGAGTGTTAAACAATTGAAGCTTGATGGTACAAGTGGAGGGAGTGAAGCTGTAGAGAAGCTTGAAATTGTGGAATGTGATTTGGAGAAGCCAGAACAGATTAAATCAGCATTAGGGAATGCATCAACTGTAATATGCACCATTGGTGCCAGTGAGAAGGAAATTTTTGACATTACCGGACCTTATCGAATAGATTACATGGCCACCAAAAACCTAGTTGATGCTGCATCTGTTGCCAAAGTAAATCACTTCATATTGGTTACTTCACTGGGAACAAACAAATTTGGTTTTCCTGCAGCTATTCTCAATTTATTTTGGGGAGTCTTGTGTTGGAAAAGGAAGGCAGAGGAAGCATTGCTAGCAAGTGGAATTCCATACACAATAGTGAGGCCTGGAGGCATGGAGAGGCCTACTGATGCTTACAAGGAAACTCATAATGTAACCCTATCAACTGAAGATACTTTGTTTGGGGGACAAGTGTCAAACCTTCAGGTTGCTGAACTCATGGCAGCCATGGCTAAGAATCCGGAACTTTCATATTGTAAAATAGTGGAGGTCATTGCCGAGACAACTGCGCCATTGACACCTGCAGAAAAACTTCTTGCAAAGATACCTTCTCAACGCCCTTACATTCCTTCGCCCAAGGTACAGGAACCAGATACTGCAGCTGTCAGTAATCCAGCTCCCTCGGCTAATGTCACGGAAGCAGTACCTAGTATTTCCCCTCAGAAAGAAACAGAACAACCAGAACCAGTGGCAGAAGTGCCTAGCATTACTCCTCAGAAAGAAACAGAACAACCGAAACCAGTGGCAAAACAGCCGCTTTCTCCTTATACTGCTTATGATGATTTAAAACCACCGTCATCCCCTTCTCCAGTCAAGCCTAGTGACAAGAAACAGATAAATATCAGTGATGCAGTGCCAACACCTAGTTCTTCAGATGCTCCAAGTAACATTCCAGTAATAGATGTCATTTCTCAGACAACAACTTCCTCAAAAGGGAAGGAGTCTCTTTCTCCTTTTGCAGCATATCCCGATTTAAAGCCTCCTAGTTCACCATCTCCTAATGCACCAACTACATCAATATCCACATCTTCTGTGGGTGAGGTGGCCAAGATTGAGGAAGTATCAAGTAATGGCCCAGCTCAACTTTCAGTGGAAGACACCCCGCAGGATGATGGACAGAATCTCCATGAGCCAAAGTCAAGACCACTTTCACCTTATGCAATGTATCCTGATTTAAAGCCTCCTAGTTCACCATCTCCTAATGCACCAAATACATCTTCTGTGGGTTCGGTGCCCAATATTGATGCAGTATCAACATCTTCTGTGGGTGGGGTGCCCAATACTGATGCAGTATCCATATCTTCTGTGAGTGAGGTGCCCAATATTGATGCAGTATCAACATCTTCTGTGGGTGGGGTGCCCAATATTGATGCAGTATCAAGCAATGGACCAGCCCAACTCTCAGTGGAAGATACACCAAAGGAGGATGGACAGGGTCTCCATGAACCAAAGTCAAGACCACTTTCACCTTTTGCAATGTATGAGGACTTGAAGCCTCCTGCATCACCATCACCTTCCTTCAGACAATCCTAG
Protein sequence

>Msa0549700

MEAFSLTSTTIPSSLTRREAAAVKPSGHVNLSKYSHFMNYPFTTTPSRSRIRSNIIRAQVSGSTKSSPAEKKDSKDDNLVFVAGATGKVGSRTVRELIKLGFKVRAGVRSAQRAGALVQSVKQLKLDGTSGGSEAVEKLEIVECDLEKPEQIKSALGNASTVICTIGASEKEIFDITGPYRIDYMATKNLVDAASVAKVNHFILVTSLGTNKFGFPAAILNLFWGVLCWKRKAEEALLASGIPYTIVRPGGMERPTDAYKETHNVTLSTEDTLFGGQVSNLQVAELMAAMAKNPELSYCKIVEVIAETTAPLTPAEKLLAKIPSQRPYIPSPKVQEPDTAAVSNPAPSANVTEAVPSISPQKETEQPEPVAEVPSITPQKETEQPKPVAKQPLSPYTAYDDLKPPSSPSPVKPSDKKQINISDAVPTPSSSDAPSNIPVIDVISQTTTSSKGKESLSPFAAYPDLKPPSSPSPNAPTTSISTSSVGEVAKIEEVSSNGPAQLSVEDTPQDDGQNLHEPKSRPLSPYAMYPDLKPPSSPSPNAPNTSSVGSVPNIDAVSTSSVGGVPNTDAVSISSVSEVPNIDAVSTSSVGGVPNIDAVSSNGPAQLSVEDTPKEDGQGLHEPKSRPLSPFAMYEDLKPPASPSPSFRQS*