AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1119420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1119420 MtrunA17_Chr7g0252641 99.752 404 1 0 43 446 1 404 0.0 816
Msa1119420 MtrunA17_Chr3g0144151 74.742 388 90 5 63 445 38 422 0.0 526
Msa1119420 MtrunA17_Chr2g0310421 49.544 329 161 4 111 437 82 407 2.95e-102 311
Msa1119420 MtrunA17_Chr4g0057861 47.130 331 169 5 110 437 4 331 1.28e-94 288
Msa1119420 MtrunA17_Chr3g0122971 45.921 331 154 5 109 437 4 311 1.53e-94 288
Msa1119420 MtrunA17_Chr6g0458861 46.667 330 170 5 111 437 3 329 3.73e-94 287
Msa1119420 MtrunA17_Chr8g0357071 42.188 256 124 5 192 430 59 307 5.44e-55 185
Msa1119420 MtrunA17_Chr8g0360951 43.836 146 72 3 286 430 1 137 1.54e-28 109
Msa1119420 MtrunA17_Chr7g0235831 74.468 47 11 1 208 253 36 82 2.04e-14 68.6
Msa1119420 MtrunA17_Chr7g0219111 66.667 39 13 0 2 40 30 68 1.32e-11 62.0
Msa1119420 MtrunA17_Chr8g0346271 66.667 39 13 0 2 40 4 42 2.43e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1119420 AT1G12900.5 87.654 405 43 4 43 446 43 441 0.0 667
Msa1119420 AT1G12900.1 87.654 405 43 4 43 446 1 399 0.0 665
Msa1119420 AT3G26650.1 86.173 405 46 3 43 446 1 396 0.0 655
Msa1119420 AT1G12900.3 91.404 349 29 1 98 446 3 350 0.0 604
Msa1119420 AT1G12900.4 91.404 349 29 1 98 446 3 350 0.0 604
Msa1119420 AT1G42970.1 73.711 388 89 7 63 445 39 418 0.0 530
Msa1119420 AT1G12900.2 93.952 248 15 0 199 446 70 317 1.12e-151 433
Msa1119420 AT1G79530.1 47.904 334 169 4 111 442 86 416 5.62e-99 303
Msa1119420 AT1G16300.1 44.241 382 199 6 63 442 45 414 4.20e-98 300
Msa1119420 AT1G13440.1 47.006 334 171 5 107 437 1 331 1.45e-97 296
Msa1119420 AT3G04120.1 46.108 334 174 5 107 437 1 331 5.98e-96 292
Msa1119420 AT1G13440.2 41.916 334 160 6 107 437 1 303 1.15e-78 247

Find 170 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAATTAGCAAATATTATT+TGG 0.131413 7_3:-68292449 None:intergenic
AATCCTTCCAAATCCGTTTA+TGG 0.131849 7_3:-68290372 None:intergenic
TGGTTTATTATATAGGTAAA+TGG 0.150079 7_3:+68289590 Msa1119420:intron
TGGCTCTCACTTCCAGTTAT+TGG 0.185348 7_3:-68292429 None:intergenic
CTCACAAAGGGTTGTTGATT+TGG 0.245442 7_3:+68292394 Msa1119420:CDS
CTCCAATCCACATATAGATT+TGG 0.274370 7_3:-68292635 None:intergenic
TCCAATCCACATATAGATTT+GGG 0.279416 7_3:-68292634 None:intergenic
CTCCTAAGGTTAATCATTCA+TGG 0.297055 7_3:+68292679 Msa1119420:three_prime_UTR
TTCCACTACAACACCTTTCC+TGG 0.298727 7_3:-68290333 None:intergenic
CTGACATTGTTGCCAATAAC+TGG 0.306527 7_3:+68292417 Msa1119420:CDS
CAGGGAGTTGGGAATAGATT+TGG 0.316973 7_3:+68291398 Msa1119420:intron
TAACCCTGCCAACCTTCCTT+GGG 0.319087 7_3:+68290598 Msa1119420:CDS
ATCCCCGTCCCCGATGGGTT+CGG 0.331839 7_3:-68288504 None:intergenic
ATGCGGGGACGGGGATGGGG+CGG 0.335890 7_3:+68288475 None:intergenic
AAGGTAGCCATAAACGGATT+TGG 0.339175 7_3:+68290365 Msa1119420:CDS
AGTCTCACATTTATATTTCA+AGG 0.340032 7_3:-68292606 None:intergenic
GGCCACTGCCTTTGCTGCTC+CGG 0.348204 7_3:-68292066 None:intergenic
TTTCTCATCCCCGTTGGGTA+TGG 0.348326 7_3:+68288536 Msa1119420:CDS
CGGGGATACCCGAACCCATC+GGG 0.353444 7_3:+68288495 Msa1119420:CDS
CTATTTCTCAATACAAGTTT+CGG 0.355673 7_3:-68292536 None:intergenic
TCCCCGTCCCCGATGGGTTC+GGG 0.357099 7_3:-68288503 None:intergenic
TGTAGCCAACCCAGCTCTTA+AGG 0.365818 7_3:+68289433 Msa1119420:CDS
ATGCTAGCCACCGTGATCTA+AGG 0.366376 7_3:+68292003 Msa1119420:CDS
GCGGGGACGGGGATGGGGCG+GGG 0.367690 7_3:+68288477 None:intergenic
GTAACCCTGCCAACCTTCCT+TGG 0.381616 7_3:+68290597 Msa1119420:CDS
GGTTTATTATATAGGTAAAT+GGG 0.383641 7_3:+68289591 Msa1119420:intron
TACACCTCCGGTGTCATTGA+TGG 0.385375 7_3:-68290453 None:intergenic
AACATTGTGCCAACTTCAAC+CGG 0.389585 7_3:+68292047 Msa1119420:CDS
TTCAAATCGGGTATGGGGAC+GGG 0.400257 7_3:+68288580 Msa1119420:CDS
TACCCGAACCCATCGGGGAC+GGG 0.402483 7_3:+68288501 Msa1119420:CDS
CTTCCTTGTAGGCTTAATCA+TGG 0.406660 7_3:+68289394 Msa1119420:intron
GGAATAGATTTGGTGATTGA+AGG 0.408403 7_3:+68291408 Msa1119420:CDS
AAGTATATTCAAATCGGGTA+TGG 0.411953 7_3:+68288573 Msa1119420:CDS
TTCAATTTCTCATCCCCGTT+GGG 0.414248 7_3:+68288531 Msa1119420:CDS
ACGGGTAAGTATATTCAAAT+CGG 0.414840 7_3:+68288567 Msa1119420:CDS
ACCCGAACCCATCGGGGACG+GGG 0.415523 7_3:+68288502 Msa1119420:CDS
CTCAAGTATGATTCTACACT+TGG 0.428198 7_3:+68290494 Msa1119420:CDS
TATTGCTATTGCAGGGAGTT+GGG 0.430899 7_3:+68291387 Msa1119420:intron
TGCGGGGACGGGGATGGGGC+GGG 0.431545 7_3:+68288476 None:intergenic
AAGGTCCTTGATCAGAAATT+CGG 0.433342 7_3:+68291624 Msa1119420:CDS
TCTGGTCTCCGTAACTCATC+AGG 0.433585 7_3:+68289632 Msa1119420:CDS
TTGGGTATGGGTAGGGTAAC+GGG 0.433745 7_3:+68288549 Msa1119420:CDS
TTAATAGTGTGTTTCTCCTA+AGG 0.442784 7_3:+68292665 Msa1119420:three_prime_UTR
AAAATTAAGGTAGCCATAAA+CGG 0.442922 7_3:+68290359 Msa1119420:CDS
TGTAGGCTTAATCATGGCTT+CGG 0.447549 7_3:+68289400 Msa1119420:intron
TTACCCTACCCATACCCAAC+GGG 0.448493 7_3:-68288545 None:intergenic
TCAAATCGGGTATGGGGACG+GGG 0.451146 7_3:+68288581 Msa1119420:CDS
TGCTTGGTATGATAATGAAT+GGG 0.460745 7_3:+68292367 Msa1119420:CDS
TTCTCATCCCCGTTGGGTAT+GGG 0.462345 7_3:+68288537 Msa1119420:CDS
GAAGGAACTTCTTGAGATGT+TGG 0.463627 7_3:+68290396 Msa1119420:CDS
GAGGAGCAAGAGAAAATTGA+TGG 0.467939 7_3:-68292561 None:intergenic
TTATTGCTATTGCAGGGAGT+TGG 0.471306 7_3:+68291386 Msa1119420:intron
TTGACACCAACCACGTAAGT+TGG 0.471552 7_3:-68291525 None:intergenic
AAGGAAGGTTGGCAGGGTTA+CGG 0.472016 7_3:-68290595 None:intergenic
ATATGTTGAACCTTAAGAGC+TGG 0.473246 7_3:-68289443 None:intergenic
CATTACAGCAGGAGCTAAGA+AGG 0.473317 7_3:+68291470 Msa1119420:CDS
GATTTGGTGATTGAAGGAAC+TGG 0.476543 7_3:+68291414 Msa1119420:CDS
AAGCCTTTGGTCACCGGTGT+AGG 0.479065 7_3:-68291976 None:intergenic
GGCTAGCATCAAGAAGCCTT+TGG 0.481799 7_3:-68291989 None:intergenic
GTTGGGTATGGGTAGGGTAA+CGG 0.481814 7_3:+68288548 Msa1119420:CDS
AAGAATTTATTGCACAAATG+AGG 0.483236 7_3:-68292580 None:intergenic
ATCTCATCCCCGTCCCCGAT+GGG 0.484238 7_3:-68288509 None:intergenic
ATAAACGGATTTGGAAGGAT+TGG 0.484804 7_3:+68290374 Msa1119420:CDS
CATTACCGAATTTCTGATCA+AGG 0.485174 7_3:-68291629 None:intergenic
AGTATATTCAAATCGGGTAT+GGG 0.485678 7_3:+68288574 Msa1119420:CDS
TGACACCAACCACGTAAGTT+GGG 0.486160 7_3:-68291524 None:intergenic
ATTATATAGGTAAATGGGAA+AGG 0.487601 7_3:+68289596 Msa1119420:intron
AGGTCAACAACCGAGACGTT+TGG 0.488985 7_3:-68292146 None:intergenic
TTTGCTGCTCCGGTTGAAGT+TGG 0.491416 7_3:-68292056 None:intergenic
ACTTACTGCATTGGTTTGGA+AGG 0.493177 7_3:-68289705 None:intergenic
TGAAGGAACTGGAGTGTTTG+TGG 0.493841 7_3:+68291425 Msa1119420:CDS
GAAGATATCCTGATGAGTTA+CGG 0.496370 7_3:-68289640 None:intergenic
TTGAGCTTGCCTTTGAGTGA+TGG 0.496796 7_3:-68292098 None:intergenic
TGAGCTTGCCTTTGAGTGAT+GGG 0.499253 7_3:-68292097 None:intergenic
AGAGGCTTGCTTTACACCTC+CGG 0.502156 7_3:-68290465 None:intergenic
GAGATACCATCAGTGCCAAC+AGG 0.502256 7_3:-68290539 None:intergenic
CGGGTAAGTATATTCAAATC+GGG 0.502279 7_3:+68288568 Msa1119420:CDS
AATCTCATCCCCGTCCCCGA+TGG 0.502356 7_3:-68288510 None:intergenic
TTGAACCTTAAGAGCTGGGT+TGG 0.502930 7_3:-68289438 None:intergenic
ATTCAAATCGGGTATGGGGA+CGG 0.503253 7_3:+68288579 Msa1119420:CDS
CATTTGAAGGTTGGAAGCAG+TGG 0.506859 7_3:+68290305 Msa1119420:intron
ACTGATGGTATCTCTGTTGA+TGG 0.508173 7_3:+68290548 Msa1119420:CDS
CTTTGAGTGATGGGAGGACA+AGG 0.511004 7_3:-68292088 None:intergenic
TTTCAGAGACAGTGCAGCCA+AGG 0.512789 7_3:+68292217 Msa1119420:CDS
TTCGTCATTGACAATGGTCA+TGG 0.513254 7_3:+68292322 Msa1119420:CDS
TATGTTGAACCTTAAGAGCT+GGG 0.513449 7_3:-68289442 None:intergenic
ATCAAGAAGCCTTTGGTCAC+CGG 0.515096 7_3:-68291982 None:intergenic
GCGGGGATACCCGAACCCAT+CGG 0.515347 7_3:+68288494 Msa1119420:CDS
CCCCAAATCTATATGTGGAT+TGG 0.516350 7_3:+68292633 Msa1119420:three_prime_UTR
ATACCCGAACCCATCGGGGA+CGG 0.517277 7_3:+68288500 Msa1119420:CDS
CATCCCCGTTGGGTATGGGT+AGG 0.518749 7_3:+68288541 Msa1119420:CDS
AAAGGGAGCAAGGCAGTTAG+TGG 0.519303 7_3:-68291598 None:intergenic
GAGAATACCGCTCAGCTCCT+TGG 0.524534 7_3:-68292234 None:intergenic
AACCATGAATGATTAACCTT+AGG 0.528998 7_3:-68292681 None:intergenic
TTATAGTCCTCATGCTCAAG+AGG 0.529563 7_3:-68292727 None:intergenic
ATCGGGTATGGGGACGGGGA+AGG 0.531053 7_3:+68288585 Msa1119420:CDS
CTGCCTTGCTCCCTTTGTCA+AGG 0.531344 7_3:+68291605 Msa1119420:CDS
AACTTCAACCGGAGCAGCAA+AGG 0.533569 7_3:+68292058 Msa1119420:CDS
TTGCTTGGTATGATAATGAA+TGG 0.536174 7_3:+68292366 Msa1119420:CDS
TGATCAAGGACCTTGACAAA+GGG 0.538588 7_3:-68291615 None:intergenic
TATAATTCCTCTTGAGCATG+AGG 0.538914 7_3:+68292720 Msa1119420:three_prime_UTR
TTGGAAGCAGTGGAAGATCC+AGG 0.539430 7_3:+68290315 Msa1119420:CDS
AACCGGAGCAGCAAAGGCAG+TGG 0.541553 7_3:+68292064 Msa1119420:CDS
ATTCAATTTCTCATCCCCGT+TGG 0.544566 7_3:+68288530 Msa1119420:CDS
TGAATGGGGTTACTCACAAA+GGG 0.544864 7_3:+68292382 Msa1119420:CDS
ATCCCCGTTGGGTATGGGTA+GGG 0.549063 7_3:+68288542 Msa1119420:CDS
GAGATGTTGGCATGGTCGTA+AGG 0.549423 7_3:+68290409 Msa1119420:CDS
CTCTTGCACGCCTTAGATCA+CGG 0.552003 7_3:-68292013 None:intergenic
GTTAAACCTGTTGGCACTGA+TGG 0.554240 7_3:+68290533 Msa1119420:CDS
CTGATCAAGGACCTTGACAA+AGG 0.554903 7_3:-68291616 None:intergenic
ATTTGCTGAAGAAGTGAATG+AGG 0.560532 7_3:+68292193 Msa1119420:CDS
ACGGATTTGGAAGGATTGGA+AGG 0.565677 7_3:+68290378 Msa1119420:CDS
AACCCTGCCAACCTTCCTTG+GGG 0.565830 7_3:+68290599 Msa1119420:CDS
GATGCTGATGTTAAACCTGT+TGG 0.570765 7_3:+68290524 Msa1119420:CDS
AAGGTACTCATCACAGCCCC+CGG 0.572475 7_3:+68291489 Msa1119420:CDS
CTTGTCCTCCCATCACTCAA+AGG 0.573578 7_3:+68292089 Msa1119420:CDS
GCTGGGAAGCACATTACAGC+AGG 0.575296 7_3:+68291459 Msa1119420:CDS
TAGCCATAAACGGATTTGGA+AGG 0.579242 7_3:+68290369 Msa1119420:CDS
CGTTGATTCGTCATTGACAA+TGG 0.579256 7_3:+68292316 Msa1119420:CDS
GTATATTCAAATCGGGTATG+GGG 0.579933 7_3:+68288575 Msa1119420:CDS
ATGAATGGGGTTACTCACAA+AGG 0.581529 7_3:+68292381 Msa1119420:CDS
GGACCTTGACAAAGGGAGCA+AGG 0.581715 7_3:-68291608 None:intergenic
ATCCAGGAAAGGTGTTGTAG+TGG 0.582457 7_3:+68290331 Msa1119420:CDS
TTGGATCACAGGTATCATCA+AGG 0.582878 7_3:+68291932 Msa1119420:intron
GTGGTTGGTGTCAATGCTGA+TGG 0.586466 7_3:+68291534 Msa1119420:CDS
CAATGACGAATCAACGGTTG+AGG 0.591375 7_3:-68292309 None:intergenic
ACATGGTGAAGGTGATTGCT+TGG 0.591983 7_3:+68292351 Msa1119420:CDS
GACATCCCAACTTACGTGGT+TGG 0.594119 7_3:+68291519 Msa1119420:CDS
TGGTATCTCTGTTGATGGAA+AGG 0.595169 7_3:+68290553 Msa1119420:CDS
ACTACCACTCACTCCTACAC+CGG 0.595936 7_3:+68291963 Msa1119420:CDS
ACAACCGAGACGTTTGGTGT+TGG 0.599911 7_3:-68292140 None:intergenic
TCGTCATTGACAATGGTCAT+GGG 0.600931 7_3:+68292323 Msa1119420:CDS
ACTCCTACACCGGTGACCAA+AGG 0.601118 7_3:+68291973 Msa1119420:CDS
GTCATTGCCATCAATGACAC+CGG 0.606230 7_3:+68290446 Msa1119420:CDS
AACTTCTTGAGATGTTGGCA+TGG 0.607812 7_3:+68290401 Msa1119420:CDS
GTGTAGAATCATACTTGAGA+AGG 0.611535 7_3:-68290490 None:intergenic
TTGATGGCAATGACATCAAG+AGG 0.611921 7_3:-68290437 None:intergenic
GTCACCGGTGTAGGAGTGAG+TGG 0.617969 7_3:-68291967 None:intergenic
TGTGCCAACACCAAACGTCT+CGG 0.622747 7_3:+68292136 Msa1119420:CDS
ATCATACTTGAGAAGGTGAG+AGG 0.624740 7_3:-68290483 None:intergenic
CATTGTCAATGACGAATCAA+CGG 0.634207 7_3:-68292315 None:intergenic
CAATCCACATATAGATTTGG+GGG 0.635755 7_3:-68292632 None:intergenic
CCAATCCACATATAGATTTG+GGG 0.636689 7_3:-68292633 None:intergenic
ACCCTGCCAACCTTCCTTGG+GGG 0.638571 7_3:+68290600 Msa1119420:CDS
TGAAATATAAATGTGAGACT+AGG 0.640249 7_3:+68292609 Msa1119420:three_prime_UTR
TGGATCACAGGTATCATCAA+GGG 0.643217 7_3:+68291933 Msa1119420:intron
CTAAAATCTACAGACACAAG+TGG 0.644572 7_3:-68292272 None:intergenic
GCTTGGTATGATAATGAATG+GGG 0.645070 7_3:+68292368 Msa1119420:CDS
TCACTCAAAGGCAAGCTCAA+CGG 0.647148 7_3:+68292101 Msa1119420:CDS
TTGTGGACAGAGAAGGTGCT+GGG 0.650460 7_3:+68291442 Msa1119420:CDS
GTAGGAGTGAGTGGTAGTCA+TGG 0.651863 7_3:-68291958 None:intergenic
AATGGTCATGGGAGATGACA+TGG 0.657489 7_3:+68292334 Msa1119420:CDS
AGGAGACATCCCAACTTACG+TGG 0.657497 7_3:+68291515 Msa1119420:CDS
TTTGTGGACAGAGAAGGTGC+TGG 0.657892 7_3:+68291441 Msa1119420:CDS
GTTACCCTACCCATACCCAA+CGG 0.659888 7_3:-68288546 None:intergenic
AGCAGTGGAAGATCCAGGAA+AGG 0.663149 7_3:+68290320 Msa1119420:CDS
TACAAAATTACAATGGCACA+TGG 0.664845 7_3:-68292484 None:intergenic
GCTTGCCTTTGAGTGATGGG+AGG 0.668788 7_3:-68292094 None:intergenic
AGAAGTGTACAAAATTACAA+TGG 0.669736 7_3:-68292491 None:intergenic
GGGGATACCCGAACCCATCG+GGG 0.673550 7_3:+68288496 Msa1119420:CDS
ATTGCAGTAGACTAATGGAG+AGG 0.674100 7_3:-68292754 None:intergenic
CATGGGAGATGACATGGTGA+AGG 0.682296 7_3:+68292340 Msa1119420:CDS
TTTGAGTGATGGGAGGACAA+GGG 0.686340 7_3:-68292087 None:intergenic
ATTGCCATCAATGACACCGG+AGG 0.712158 7_3:+68290449 Msa1119420:CDS
TGCTGATGATATCATCAGCG+TGG 0.722837 7_3:-68291563 None:intergenic
AGTGCAGCCAAGGAGCTGAG+CGG 0.723974 7_3:+68292227 Msa1119420:CDS
TACCCTACCCATACCCAACG+GGG 0.727048 7_3:-68288544 None:intergenic
GGAGTGTTTGTGGACAGAGA+AGG 0.732780 7_3:+68291435 Msa1119420:CDS
TTGCACGCCTTAGATCACGG+TGG 0.804209 7_3:-68292010 None:intergenic
TCTTTGAGACTTGAACAACG+AGG 0.832544 7_3:-68292166 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAATTTAAACTACAAAA+TGG + chr7_3:68289020-68289039 Msa1119420:intron 10.0%
!!! TAAAAAAAACGATATTTTTT+TGG - chr7_3:68290077-68290096 None:intergenic 10.0%
!! TATAATTAGCAAATATTATT+TGG - chr7_3:68292452-68292471 None:intergenic 10.0%
!!! TTTTTTCTATTGTAATATGA+TGG - chr7_3:68289127-68289146 None:intergenic 15.0%
!!! AATTCTTTGGTTTATTATAT+AGG + chr7_3:68289583-68289602 Msa1119420:intron 15.0%
!! TAAAATTATAAGTCATTCAT+TGG - chr7_3:68289739-68289758 None:intergenic 15.0%
!! TAAAATATCAAACTTGAATA+TGG + chr7_3:68290104-68290123 Msa1119420:intron 15.0%
!!! TTTTGTAACTAACTAAAATT+AGG + chr7_3:68290726-68290745 Msa1119420:intron 15.0%
!! TTTGGATAAACAATTTAATT+AGG + chr7_3:68290811-68290830 Msa1119420:intron 15.0%
!! GATTATATTAACCATTTAAA+TGG + chr7_3:68291141-68291160 Msa1119420:intron 15.0%
!!! TTTTTGCTTATAATAAAAAC+CGG + chr7_3:68291689-68291708 Msa1119420:intron 15.0%
!!! TATATAAGATCGTTGTTTTT+AGG - chr7_3:68288971-68288990 None:intergenic 20.0%
!! TAAACTCATATATTAACTAG+TGG + chr7_3:68289490-68289509 Msa1119420:intron 20.0%
!! TGGTTTATTATATAGGTAAA+TGG + chr7_3:68289590-68289609 Msa1119420:intron 20.0%
!! GGTTTATTATATAGGTAAAT+GGG + chr7_3:68289591-68289610 Msa1119420:intron 20.0%
!!! AGTCTTTTAGATTCATATAT+TGG + chr7_3:68289948-68289967 Msa1119420:intron 20.0%
!!! TAATTTGTTTAATCAGTTCA+TGG - chr7_3:68290235-68290254 None:intergenic 20.0%
!! GATAGATATTCAATTCTATT+TGG + chr7_3:68290793-68290812 Msa1119420:intron 20.0%
!! ATTTAATTAGGCACTTATAA+CGG + chr7_3:68290823-68290842 Msa1119420:intron 20.0%
!!! GCATATTTTTATTTTAGAGT+AGG + chr7_3:68291039-68291058 Msa1119420:intron 20.0%
!! TATGTATAAACTTAATGTTG+TGG - chr7_3:68291829-68291848 None:intergenic 20.0%
!! TTTCTAACATATTAAGACAT+TGG + chr7_3:68291913-68291932 Msa1119420:intron 20.0%
! TCAACTATTGAAAAAATCGT+AGG - chr7_3:68288711-68288730 None:intergenic 25.0%
! AAAAAAACGTTTAGACAAGA+TGG + chr7_3:68288793-68288812 Msa1119420:intron 25.0%
!!! AGTTTTTTCTATCTTAACCA+AGG + chr7_3:68288820-68288839 Msa1119420:intron 25.0%
! TACCAGACTAAGAAAAAAAT+AGG + chr7_3:68288993-68289012 Msa1119420:intron 25.0%
!!! AACCTATTTTTTTCTTAGTC+TGG - chr7_3:68288998-68289017 None:intergenic 25.0%
! TCTATTGTAATATGATGGTT+GGG - chr7_3:68289122-68289141 None:intergenic 25.0%
! TTCTATTGTAATATGATGGT+TGG - chr7_3:68289123-68289142 None:intergenic 25.0%
! AGTAAGATGATATTCATGAT+TGG + chr7_3:68289161-68289180 Msa1119420:intron 25.0%
!! TAGCATTTTCATTCAATGAA+TGG - chr7_3:68289224-68289243 None:intergenic 25.0%
! TATAAAGTGTAGTAAGATGT+GGG - chr7_3:68289304-68289323 None:intergenic 25.0%
! ATTATATAGGTAAATGGGAA+AGG + chr7_3:68289596-68289615 Msa1119420:intron 25.0%
!!! TCTGAAGTTTTTCTAGAAAA+GGG - chr7_3:68289665-68289684 None:intergenic 25.0%
!!! ATCTGAAGTTTTTCTAGAAA+AGG - chr7_3:68289666-68289685 None:intergenic 25.0%
! TAAAAAATCCATGTTAGACT+TGG - chr7_3:68289823-68289842 None:intergenic 25.0%
! GACTCATTCTATAAGTAAAA+TGG - chr7_3:68289932-68289951 None:intergenic 25.0%
! TATCATATCACATTAGTGTT+AGG + chr7_3:68289986-68290005 Msa1119420:intron 25.0%
! AAAATTAAGGTAGCCATAAA+CGG + chr7_3:68290359-68290378 Msa1119420:CDS 25.0%
!!! ATTCATTGATTTTGTTGCAA+TGG + chr7_3:68290637-68290656 Msa1119420:intron 25.0%
!! GACAAATATTTTTCTGTATG+CGG - chr7_3:68291120-68291139 None:intergenic 25.0%
! GCATACAGAAAAATATTTGT+CGG + chr7_3:68291119-68291138 Msa1119420:intron 25.0%
! ATAACTGAGATCCATTTAAA+TGG - chr7_3:68291155-68291174 None:intergenic 25.0%
! ACAATATTAATGTATGCCTA+AGG - chr7_3:68291309-68291328 None:intergenic 25.0%
!! CACGTATTTGTTAGAAAATA+TGG - chr7_3:68291665-68291684 None:intergenic 25.0%
!! AGAAGTGTACAAAATTACAA+TGG - chr7_3:68292494-68292513 None:intergenic 25.0%
!! CTATTTCTCAATACAAGTTT+CGG - chr7_3:68292539-68292558 None:intergenic 25.0%
! AAGAATTTATTGCACAAATG+AGG - chr7_3:68292583-68292602 None:intergenic 25.0%
! AGTCTCACATTTATATTTCA+AGG - chr7_3:68292609-68292628 None:intergenic 25.0%
! TGAAATATAAATGTGAGACT+AGG + chr7_3:68292609-68292628 Msa1119420:three_prime_UTR 25.0%
ACGGGTAAGTATATTCAAAT+CGG + chr7_3:68288567-68288586 Msa1119420:CDS 30.0%
AAGTATATTCAAATCGGGTA+TGG + chr7_3:68288573-68288592 Msa1119420:CDS 30.0%
AGTATATTCAAATCGGGTAT+GGG + chr7_3:68288574-68288593 Msa1119420:CDS 30.0%
AACAAAGAAGGATTCAATGT+AGG - chr7_3:68288645-68288664 None:intergenic 30.0%
TACATTGAATCCTTCTTTGT+TGG + chr7_3:68288644-68288663 Msa1119420:intron 30.0%
TCCAGTGAAATTTCATTCAA+AGG + chr7_3:68288733-68288752 Msa1119420:intron 30.0%
ACCTTTGAATGAAATTTCAC+TGG - chr7_3:68288737-68288756 None:intergenic 30.0%
CAAGTTTAAACTCATAACCT+TGG - chr7_3:68288840-68288859 None:intergenic 30.0%
TGAATCTTTATGGCTTAGAT+TGG - chr7_3:68289097-68289116 None:intergenic 30.0%
TCCAAAATCTAATCCTTACT+TGG + chr7_3:68289244-68289263 Msa1119420:intron 30.0%
! ACCAAGTAAGGATTAGATTT+TGG - chr7_3:68289248-68289267 None:intergenic 30.0%
AAATCTAATCCTTACTTGGT+TGG + chr7_3:68289248-68289267 Msa1119420:intron 30.0%
AATCTAATCCTTACTTGGTT+GGG + chr7_3:68289249-68289268 Msa1119420:intron 30.0%
CTATAAAGTGTAGTAAGATG+TGG - chr7_3:68289305-68289324 None:intergenic 30.0%
TACAATTTCTTCTTCCTTGT+AGG + chr7_3:68289383-68289402 Msa1119420:intron 30.0%
ATGTTGTAGCAATAAAGCTA+GGG + chr7_3:68289517-68289536 Msa1119420:intron 30.0%
!! AAAAACTTACTGCATTGGTT+TGG - chr7_3:68289712-68289731 None:intergenic 30.0%
GAGATAAAAACTTACTGCAT+TGG - chr7_3:68289717-68289736 None:intergenic 30.0%
ATAATCAACCAAGTCTAACA+TGG + chr7_3:68289812-68289831 Msa1119420:intron 30.0%
TGCACACTTAATGATTTCTA+TGG + chr7_3:68289845-68289864 Msa1119420:intron 30.0%
!! ACATTTTGATCTTGATCGAA+CGG - chr7_3:68290054-68290073 None:intergenic 30.0%
! ACCATCAAGTGTGTATTTTT+GGG - chr7_3:68290210-68290229 None:intergenic 30.0%
! AACCATCAAGTGTGTATTTT+TGG - chr7_3:68290211-68290230 None:intergenic 30.0%
CTACATGTTTGTACATTTGA+AGG + chr7_3:68290292-68290311 Msa1119420:intron 30.0%
ATGTTTGTACATTTGAAGGT+TGG + chr7_3:68290296-68290315 Msa1119420:intron 30.0%
! TGTAGTGGAAGCAAAAATTA+AGG + chr7_3:68290346-68290365 Msa1119420:CDS 30.0%
GCAACAAAATCAATGAATGA+AGG - chr7_3:68290635-68290654 None:intergenic 30.0%
! AAGATTGTTATTGCTATTGC+AGG + chr7_3:68291379-68291398 Msa1119420:intron 30.0%
! AGATTGTTATTGCTATTGCA+GGG + chr7_3:68291380-68291399 Msa1119420:intron 30.0%
TGTTAGAAAATATGGCGATA+AGG - chr7_3:68291657-68291676 None:intergenic 30.0%
ATATTAAGACATTGGATCAC+AGG + chr7_3:68291921-68291940 Msa1119420:intron 30.0%
! TTGCTTGGTATGATAATGAA+TGG + chr7_3:68292366-68292385 Msa1119420:CDS 30.0%
! TGCTTGGTATGATAATGAAT+GGG + chr7_3:68292367-68292386 Msa1119420:CDS 30.0%
TACAAAATTACAATGGCACA+TGG - chr7_3:68292487-68292506 None:intergenic 30.0%
TCCAATCCACATATAGATTT+GGG - chr7_3:68292637-68292656 None:intergenic 30.0%
TTAATAGTGTGTTTCTCCTA+AGG + chr7_3:68292665-68292684 Msa1119420:three_prime_UTR 30.0%
AACCATGAATGATTAACCTT+AGG - chr7_3:68292684-68292703 None:intergenic 30.0%
CGGGTAAGTATATTCAAATC+GGG + chr7_3:68288568-68288587 Msa1119420:CDS 35.0%
GTATATTCAAATCGGGTATG+GGG + chr7_3:68288575-68288594 Msa1119420:CDS 35.0%
ACATGAGAAACCAACAAAGA+AGG - chr7_3:68288657-68288676 None:intergenic 35.0%
TTTGAATCTCCTTAGACTTG+AGG + chr7_3:68288910-68288929 Msa1119420:intron 35.0%
AAGACTAATCCTCAAGTCTA+AGG - chr7_3:68288922-68288941 None:intergenic 35.0%
!! TGAGGATTAGTCTTCATAGT+TGG + chr7_3:68288928-68288947 Msa1119420:intron 35.0%
! TTAGTCTTCATAGTTGGATG+TGG + chr7_3:68288934-68288953 Msa1119420:intron 35.0%
!!! TGGTTTTCTAGTTACATCAG+TGG - chr7_3:68289077-68289096 None:intergenic 35.0%
TATGTTGAACCTTAAGAGCT+GGG - chr7_3:68289445-68289464 None:intergenic 35.0%
ATATGTTGAACCTTAAGAGC+TGG - chr7_3:68289446-68289465 None:intergenic 35.0%
!! CTAGCTTTATTGCTACAACA+TGG - chr7_3:68289518-68289537 None:intergenic 35.0%
CATGTTGTAGCAATAAAGCT+AGG + chr7_3:68289516-68289535 Msa1119420:intron 35.0%
! AAAGGCTTTTCTGAATTCTC+TGG + chr7_3:68289614-68289633 Msa1119420:CDS 35.0%
GAAGATATCCTGATGAGTTA+CGG - chr7_3:68289643-68289662 None:intergenic 35.0%
AAAATATCAACTCGAGACGT+AGG + chr7_3:68290025-68290044 Msa1119420:intron 35.0%
!!! AAGTGTGTATTTTTGGGATC+CGG - chr7_3:68290204-68290223 None:intergenic 35.0%
TCCCAAAAATACACACTTGA+TGG + chr7_3:68290206-68290225 Msa1119420:intron 35.0%
AATCCTTCCAAATCCGTTTA+TGG - chr7_3:68290375-68290394 None:intergenic 35.0%
! ATAAACGGATTTGGAAGGAT+TGG + chr7_3:68290374-68290393 Msa1119420:CDS 35.0%
GTGTAGAATCATACTTGAGA+AGG - chr7_3:68290493-68290512 None:intergenic 35.0%
CTCAAGTATGATTCTACACT+TGG + chr7_3:68290494-68290513 Msa1119420:CDS 35.0%
TTTGTTGCAATGGAATTGTG+TGG + chr7_3:68290647-68290666 Msa1119420:intron 35.0%
GCATCATACAAACACATTCA+TGG - chr7_3:68291196-68291215 None:intergenic 35.0%
!! GGAATAGATTTGGTGATTGA+AGG + chr7_3:68291408-68291427 Msa1119420:CDS 35.0%
AAGGTCCTTGATCAGAAATT+CGG + chr7_3:68291624-68291643 Msa1119420:CDS 35.0%
CATTACCGAATTTCTGATCA+AGG - chr7_3:68291632-68291651 None:intergenic 35.0%
! ATTTGCTGAAGAAGTGAATG+AGG + chr7_3:68292193-68292212 Msa1119420:CDS 35.0%
CTAAAATCTACAGACACAAG+TGG - chr7_3:68292275-68292294 None:intergenic 35.0%
! CACTTGTGTCTGTAGATTTT+AGG + chr7_3:68292273-68292292 Msa1119420:CDS 35.0%
CATTGTCAATGACGAATCAA+CGG - chr7_3:68292318-68292337 None:intergenic 35.0%
! GCTTGGTATGATAATGAATG+GGG + chr7_3:68292368-68292387 Msa1119420:CDS 35.0%
CAATCCACATATAGATTTGG+GGG - chr7_3:68292635-68292654 None:intergenic 35.0%
CCAATCCACATATAGATTTG+GGG - chr7_3:68292636-68292655 None:intergenic 35.0%
CTCCAATCCACATATAGATT+TGG - chr7_3:68292638-68292657 None:intergenic 35.0%
CTCCTAAGGTTAATCATTCA+TGG + chr7_3:68292679-68292698 Msa1119420:three_prime_UTR 35.0%
TATAATTCCTCTTGAGCATG+AGG + chr7_3:68292720-68292739 Msa1119420:three_prime_UTR 35.0%
ATTCAATTTCTCATCCCCGT+TGG + chr7_3:68288530-68288549 Msa1119420:CDS 40.0%
TTCAATTTCTCATCCCCGTT+GGG + chr7_3:68288531-68288550 Msa1119420:CDS 40.0%
TTCAATGTAGGCATGGCAAT+GGG - chr7_3:68288633-68288652 None:intergenic 40.0%
ATTCAATGTAGGCATGGCAA+TGG - chr7_3:68288634-68288653 None:intergenic 40.0%
AGAAGGATTCAATGTAGGCA+TGG - chr7_3:68288640-68288659 None:intergenic 40.0%
TGGTTGGGCATGAATCTTTA+TGG - chr7_3:68289107-68289126 None:intergenic 40.0%
CTTCCTTGTAGGCTTAATCA+TGG + chr7_3:68289394-68289413 Msa1119420:intron 40.0%
AAGCCATGATTAAGCCTACA+AGG - chr7_3:68289400-68289419 None:intergenic 40.0%
TGTAGGCTTAATCATGGCTT+CGG + chr7_3:68289400-68289419 Msa1119420:intron 40.0%
!! ACTTACTGCATTGGTTTGGA+AGG - chr7_3:68289708-68289727 None:intergenic 40.0%
! AAGGTAGCCATAAACGGATT+TGG + chr7_3:68290365-68290384 Msa1119420:CDS 40.0%
! TAGCCATAAACGGATTTGGA+AGG + chr7_3:68290369-68290388 Msa1119420:CDS 40.0%
GAAGGAACTTCTTGAGATGT+TGG + chr7_3:68290396-68290415 Msa1119420:CDS 40.0%
AACTTCTTGAGATGTTGGCA+TGG + chr7_3:68290401-68290420 Msa1119420:CDS 40.0%
! TTGATGGCAATGACATCAAG+AGG - chr7_3:68290440-68290459 None:intergenic 40.0%
ATCATACTTGAGAAGGTGAG+AGG - chr7_3:68290486-68290505 None:intergenic 40.0%
GATGCTGATGTTAAACCTGT+TGG + chr7_3:68290524-68290543 Msa1119420:CDS 40.0%
ACTGATGGTATCTCTGTTGA+TGG + chr7_3:68290548-68290567 Msa1119420:CDS 40.0%
! TGGTATCTCTGTTGATGGAA+AGG + chr7_3:68290553-68290572 Msa1119420:CDS 40.0%
! TTATTGCTATTGCAGGGAGT+TGG + chr7_3:68291386-68291405 Msa1119420:intron 40.0%
! TATTGCTATTGCAGGGAGTT+GGG + chr7_3:68291387-68291406 Msa1119420:intron 40.0%
!! GATTTGGTGATTGAAGGAAC+TGG + chr7_3:68291414-68291433 Msa1119420:CDS 40.0%
TGATCAAGGACCTTGACAAA+GGG - chr7_3:68291618-68291637 None:intergenic 40.0%
TTGGATCACAGGTATCATCA+AGG + chr7_3:68291932-68291951 Msa1119420:intron 40.0%
TGGATCACAGGTATCATCAA+GGG + chr7_3:68291933-68291952 Msa1119420:intron 40.0%
AACATTGTGCCAACTTCAAC+CGG + chr7_3:68292047-68292066 Msa1119420:CDS 40.0%
!! TCTTTGAGACTTGAACAACG+AGG - chr7_3:68292169-68292188 None:intergenic 40.0%
!! CGTTGATTCGTCATTGACAA+TGG + chr7_3:68292316-68292335 Msa1119420:CDS 40.0%
TTCGTCATTGACAATGGTCA+TGG + chr7_3:68292322-68292341 Msa1119420:CDS 40.0%
TCGTCATTGACAATGGTCAT+GGG + chr7_3:68292323-68292342 Msa1119420:CDS 40.0%
ATGAATGGGGTTACTCACAA+AGG + chr7_3:68292381-68292400 Msa1119420:CDS 40.0%
TGAATGGGGTTACTCACAAA+GGG + chr7_3:68292382-68292401 Msa1119420:CDS 40.0%
! CTCACAAAGGGTTGTTGATT+TGG + chr7_3:68292394-68292413 Msa1119420:CDS 40.0%
CTGACATTGTTGCCAATAAC+TGG + chr7_3:68292417-68292436 Msa1119420:CDS 40.0%
GAGGAGCAAGAGAAAATTGA+TGG - chr7_3:68292564-68292583 None:intergenic 40.0%
CCCCAAATCTATATGTGGAT+TGG + chr7_3:68292633-68292652 Msa1119420:three_prime_UTR 40.0%
TTATAGTCCTCATGCTCAAG+AGG - chr7_3:68292730-68292749 None:intergenic 40.0%
ATTCAAATCGGGTATGGGGA+CGG + chr7_3:68288579-68288598 Msa1119420:CDS 45.0%
TCAATGTAGGCATGGCAATG+GGG - chr7_3:68288632-68288651 None:intergenic 45.0%
CTCATGAACCCAACCAAGTA+AGG - chr7_3:68289260-68289279 None:intergenic 45.0%
TGTAGTAAGATGTGGGTACG+TGG - chr7_3:68289297-68289316 None:intergenic 45.0%
TTGAACCTTAAGAGCTGGGT+TGG - chr7_3:68289441-68289460 None:intergenic 45.0%
ATATCAACTCGAGACGTAGG+TGG + chr7_3:68290028-68290047 Msa1119420:intron 45.0%
ATTCTCCGCATTCATGCAAC+GGG - chr7_3:68290164-68290183 None:intergenic 45.0%
GATTCTCCGCATTCATGCAA+CGG - chr7_3:68290165-68290184 None:intergenic 45.0%
CATTTGAAGGTTGGAAGCAG+TGG + chr7_3:68290305-68290324 Msa1119420:intron 45.0%
!! ATCCAGGAAAGGTGTTGTAG+TGG + chr7_3:68290331-68290350 Msa1119420:CDS 45.0%
TTCCACTACAACACCTTTCC+TGG - chr7_3:68290336-68290355 None:intergenic 45.0%
ACGGATTTGGAAGGATTGGA+AGG + chr7_3:68290378-68290397 Msa1119420:CDS 45.0%
GTCATTGCCATCAATGACAC+CGG + chr7_3:68290446-68290465 Msa1119420:CDS 45.0%
! GTTAAACCTGTTGGCACTGA+TGG + chr7_3:68290533-68290552 Msa1119420:CDS 45.0%
!! TGGAATTGTGTGGTCTTGTG+TGG + chr7_3:68290657-68290676 Msa1119420:intron 45.0%
CAGGGAGTTGGGAATAGATT+TGG + chr7_3:68291398-68291417 Msa1119420:intron 45.0%
! TGAAGGAACTGGAGTGTTTG+TGG + chr7_3:68291425-68291444 Msa1119420:CDS 45.0%
CATTACAGCAGGAGCTAAGA+AGG + chr7_3:68291470-68291489 Msa1119420:CDS 45.0%
! AGTTGGGATGTCTCCTTTTC+CGG - chr7_3:68291511-68291530 None:intergenic 45.0%
TGACACCAACCACGTAAGTT+GGG - chr7_3:68291527-68291546 None:intergenic 45.0%
TTGACACCAACCACGTAAGT+TGG - chr7_3:68291528-68291547 None:intergenic 45.0%
TGCTGATGATATCATCAGCG+TGG - chr7_3:68291566-68291585 None:intergenic 45.0%
CTGATCAAGGACCTTGACAA+AGG - chr7_3:68291619-68291638 None:intergenic 45.0%
ATCAAGAAGCCTTTGGTCAC+CGG - chr7_3:68291985-68292004 None:intergenic 45.0%
! TTTGAGTGATGGGAGGACAA+GGG - chr7_3:68292090-68292109 None:intergenic 45.0%
TGAGCTTGCCTTTGAGTGAT+GGG - chr7_3:68292100-68292119 None:intergenic 45.0%
TTGAGCTTGCCTTTGAGTGA+TGG - chr7_3:68292101-68292120 None:intergenic 45.0%
TCACTCAAAGGCAAGCTCAA+CGG + chr7_3:68292101-68292120 Msa1119420:CDS 45.0%
CAATGACGAATCAACGGTTG+AGG - chr7_3:68292312-68292331 None:intergenic 45.0%
AATGGTCATGGGAGATGACA+TGG + chr7_3:68292334-68292353 Msa1119420:CDS 45.0%
ACATGGTGAAGGTGATTGCT+TGG + chr7_3:68292351-68292370 Msa1119420:CDS 45.0%
TGGCTCTCACTTCCAGTTAT+TGG - chr7_3:68292432-68292451 None:intergenic 45.0%
TAGGCCCCCAAATCTATATG+TGG + chr7_3:68292628-68292647 Msa1119420:three_prime_UTR 45.0%
!! AAATATAATATAAAATATGT+GGG - chr7_3:68288682-68288701 None:intergenic 5.0%
!! AAAATATAATATAAAATATG+TGG - chr7_3:68288683-68288702 None:intergenic 5.0%
!!! TTTTTTTTTTTTTAATTCTT+TGG + chr7_3:68289570-68289589 Msa1119420:intron 5.0%
TTTCTCATCCCCGTTGGGTA+TGG + chr7_3:68288536-68288555 Msa1119420:CDS 50.0%
TTCTCATCCCCGTTGGGTAT+GGG + chr7_3:68288537-68288556 Msa1119420:CDS 50.0%
TTACCCTACCCATACCCAAC+GGG - chr7_3:68288548-68288567 None:intergenic 50.0%
GTTACCCTACCCATACCCAA+CGG - chr7_3:68288549-68288568 None:intergenic 50.0%
GTTGGGTATGGGTAGGGTAA+CGG + chr7_3:68288548-68288567 Msa1119420:CDS 50.0%
TTGGGTATGGGTAGGGTAAC+GGG + chr7_3:68288549-68288568 Msa1119420:CDS 50.0%
TTCAAATCGGGTATGGGGAC+GGG + chr7_3:68288580-68288599 Msa1119420:CDS 50.0%
TGTAGCCAACCCAGCTCTTA+AGG + chr7_3:68289433-68289452 Msa1119420:CDS 50.0%
TCTGGTCTCCGTAACTCATC+AGG + chr7_3:68289632-68289651 Msa1119420:CDS 50.0%
TCATGCAACGGGGACTTAAG+TGG - chr7_3:68290153-68290172 None:intergenic 50.0%
AAGTCCCCGTTGCATGAATG+CGG + chr7_3:68290156-68290175 Msa1119420:intron 50.0%
TTCTCCGCATTCATGCAACG+GGG - chr7_3:68290163-68290182 None:intergenic 50.0%
TTGGAAGCAGTGGAAGATCC+AGG + chr7_3:68290315-68290334 Msa1119420:CDS 50.0%
AGCAGTGGAAGATCCAGGAA+AGG + chr7_3:68290320-68290339 Msa1119420:CDS 50.0%
GAGATGTTGGCATGGTCGTA+AGG + chr7_3:68290409-68290428 Msa1119420:CDS 50.0%
ATTGCCATCAATGACACCGG+AGG + chr7_3:68290449-68290468 Msa1119420:CDS 50.0%
!! TACACCTCCGGTGTCATTGA+TGG - chr7_3:68290456-68290475 None:intergenic 50.0%
! AGAGGCTTGCTTTACACCTC+CGG - chr7_3:68290468-68290487 None:intergenic 50.0%
GAGATACCATCAGTGCCAAC+AGG - chr7_3:68290542-68290561 None:intergenic 50.0%
AAGGAAGGTTGGCAGGGTTA+CGG - chr7_3:68290598-68290617 None:intergenic 50.0%
TAACCCTGCCAACCTTCCTT+GGG + chr7_3:68290598-68290617 Msa1119420:CDS 50.0%
!! CGCAGTATCGCATTAGCCTT+AGG + chr7_3:68291290-68291309 Msa1119420:intron 50.0%
! GGAGTGTTTGTGGACAGAGA+AGG + chr7_3:68291435-68291454 Msa1119420:CDS 50.0%
! TTTGTGGACAGAGAAGGTGC+TGG + chr7_3:68291441-68291460 Msa1119420:CDS 50.0%
!! TTGTGGACAGAGAAGGTGCT+GGG + chr7_3:68291442-68291461 Msa1119420:CDS 50.0%
! TTGGGATGTCTCCTTTTCCG+GGG - chr7_3:68291509-68291528 None:intergenic 50.0%
! GTTGGGATGTCTCCTTTTCC+GGG - chr7_3:68291510-68291529 None:intergenic 50.0%
AGGAGACATCCCAACTTACG+TGG + chr7_3:68291515-68291534 Msa1119420:CDS 50.0%
GACATCCCAACTTACGTGGT+TGG + chr7_3:68291519-68291538 Msa1119420:CDS 50.0%
!! GTGGTTGGTGTCAATGCTGA+TGG + chr7_3:68291534-68291553 Msa1119420:CDS 50.0%
AAAGGGAGCAAGGCAGTTAG+TGG - chr7_3:68291601-68291620 None:intergenic 50.0%
GTAGGAGTGAGTGGTAGTCA+TGG - chr7_3:68291961-68291980 None:intergenic 50.0%
ACTACCACTCACTCCTACAC+CGG + chr7_3:68291963-68291982 Msa1119420:CDS 50.0%
GGCTAGCATCAAGAAGCCTT+TGG - chr7_3:68291992-68292011 None:intergenic 50.0%
ATGCTAGCCACCGTGATCTA+AGG + chr7_3:68292003-68292022 Msa1119420:CDS 50.0%
CTCTTGCACGCCTTAGATCA+CGG - chr7_3:68292016-68292035 None:intergenic 50.0%
TTTGCTGCTCCGGTTGAAGT+TGG - chr7_3:68292059-68292078 None:intergenic 50.0%
AACTTCAACCGGAGCAGCAA+AGG + chr7_3:68292058-68292077 Msa1119420:CDS 50.0%
! CTTTGAGTGATGGGAGGACA+AGG - chr7_3:68292091-68292110 None:intergenic 50.0%
CTTGTCCTCCCATCACTCAA+AGG + chr7_3:68292089-68292108 Msa1119420:CDS 50.0%
TGTGCCAACACCAAACGTCT+CGG + chr7_3:68292136-68292155 Msa1119420:CDS 50.0%
!! ACAACCGAGACGTTTGGTGT+TGG - chr7_3:68292143-68292162 None:intergenic 50.0%
AGGTCAACAACCGAGACGTT+TGG - chr7_3:68292149-68292168 None:intergenic 50.0%
TTTCAGAGACAGTGCAGCCA+AGG + chr7_3:68292217-68292236 Msa1119420:CDS 50.0%
CATGGGAGATGACATGGTGA+AGG + chr7_3:68292340-68292359 Msa1119420:CDS 50.0%
ATCCCCGTTGGGTATGGGTA+GGG + chr7_3:68288542-68288561 Msa1119420:CDS 55.0%
TACCCTACCCATACCCAACG+GGG - chr7_3:68288547-68288566 None:intergenic 55.0%
TCAAATCGGGTATGGGGACG+GGG + chr7_3:68288581-68288600 Msa1119420:CDS 55.0%
ATGTAGGCATGGCAATGGGG+CGG - chr7_3:68288629-68288648 None:intergenic 55.0%
GATGTGGGTACGTGGATGTG+TGG - chr7_3:68289289-68289308 None:intergenic 55.0%
TGCGGAGAATCCCTGACTAC+AGG + chr7_3:68290174-68290193 Msa1119420:intron 55.0%
GCGGAGAATCCCTGACTACA+GGG + chr7_3:68290175-68290194 Msa1119420:intron 55.0%
ATCCCTGACTACAGGGTAGC+CGG + chr7_3:68290182-68290201 Msa1119420:intron 55.0%
ATCCGGCTACCCTGTAGTCA+GGG - chr7_3:68290187-68290206 None:intergenic 55.0%
GTAACCCTGCCAACCTTCCT+TGG + chr7_3:68290597-68290616 Msa1119420:CDS 55.0%
AACCCTGCCAACCTTCCTTG+GGG + chr7_3:68290599-68290618 Msa1119420:CDS 55.0%
AGCTTACCCCCAAGGAAGGT+TGG - chr7_3:68290609-68290628 None:intergenic 55.0%
GAAGAGCTTACCCCCAAGGA+AGG - chr7_3:68290613-68290632 None:intergenic 55.0%
GAAGGAAGAGCTTACCCCCA+AGG - chr7_3:68290617-68290636 None:intergenic 55.0%
! GCTGGGAAGCACATTACAGC+AGG + chr7_3:68291459-68291478 Msa1119420:CDS 55.0%
! AAGGTACTCATCACAGCCCC+CGG + chr7_3:68291489-68291508 Msa1119420:CDS 55.0%
! TGGGATGTCTCCTTTTCCGG+GGG - chr7_3:68291508-68291527 None:intergenic 55.0%
CTGCCTTGCTCCCTTTGTCA+AGG + chr7_3:68291605-68291624 Msa1119420:CDS 55.0%
GGACCTTGACAAAGGGAGCA+AGG - chr7_3:68291611-68291630 None:intergenic 55.0%
CGACGCTATGCTACACTCTC+CGG - chr7_3:68291711-68291730 None:intergenic 55.0%
ACTCCTACACCGGTGACCAA+AGG + chr7_3:68291973-68291992 Msa1119420:CDS 55.0%
AAGCCTTTGGTCACCGGTGT+AGG - chr7_3:68291979-68291998 None:intergenic 55.0%
TTGCACGCCTTAGATCACGG+TGG - chr7_3:68292013-68292032 None:intergenic 55.0%
! GCTTGCCTTTGAGTGATGGG+AGG - chr7_3:68292097-68292116 None:intergenic 55.0%
GAGAATACCGCTCAGCTCCT+TGG - chr7_3:68292237-68292256 None:intergenic 55.0%
ATACCCGAACCCATCGGGGA+CGG + chr7_3:68288500-68288519 Msa1119420:CDS 60.0%
ATCTCATCCCCGTCCCCGAT+GGG - chr7_3:68288512-68288531 None:intergenic 60.0%
AATCTCATCCCCGTCCCCGA+TGG - chr7_3:68288513-68288532 None:intergenic 60.0%
CATCCCCGTTGGGTATGGGT+AGG + chr7_3:68288541-68288560 Msa1119420:CDS 60.0%
TGTAGGCATGGCAATGGGGC+GGG - chr7_3:68288628-68288647 None:intergenic 60.0%
GATCCGGCTACCCTGTAGTC+AGG - chr7_3:68290188-68290207 None:intergenic 60.0%
ACCCTGCCAACCTTCCTTGG+GGG + chr7_3:68290600-68290619 Msa1119420:CDS 60.0%
ACCCCCAAGGAAGGTTGGCA+GGG - chr7_3:68290604-68290623 None:intergenic 60.0%
TACCCCCAAGGAAGGTTGGC+AGG - chr7_3:68290605-68290624 None:intergenic 60.0%
CTCATCACAGCCCCCGGAAA+AGG + chr7_3:68291495-68291514 Msa1119420:CDS 60.0%
GTCACCGGTGTAGGAGTGAG+TGG - chr7_3:68291970-68291989 None:intergenic 60.0%
AACCGGAGCAGCAAAGGCAG+TGG + chr7_3:68292064-68292083 Msa1119420:CDS 60.0%
AGTGCAGCCAAGGAGCTGAG+CGG + chr7_3:68292227-68292246 Msa1119420:CDS 60.0%
GCGGGGATACCCGAACCCAT+CGG + chr7_3:68288494-68288513 Msa1119420:CDS 65.0%
CGGGGATACCCGAACCCATC+GGG + chr7_3:68288495-68288514 Msa1119420:CDS 65.0%
GGGGATACCCGAACCCATCG+GGG + chr7_3:68288496-68288515 Msa1119420:CDS 65.0%
TACCCGAACCCATCGGGGAC+GGG + chr7_3:68288501-68288520 Msa1119420:CDS 65.0%
! ATCCCCGTCCCCGATGGGTT+CGG - chr7_3:68288507-68288526 None:intergenic 65.0%
ATCGGGTATGGGGACGGGGA+AGG + chr7_3:68288585-68288604 Msa1119420:CDS 65.0%
GTAGGCATGGCAATGGGGCG+GGG - chr7_3:68288627-68288646 None:intergenic 65.0%
GGCCACTGCCTTTGCTGCTC+CGG - chr7_3:68292069-68292088 None:intergenic 65.0%
ACCCGAACCCATCGGGGACG+GGG + chr7_3:68288502-68288521 Msa1119420:CDS 70.0%
! TCCCCGTCCCCGATGGGTTC+GGG - chr7_3:68288506-68288525 None:intergenic 70.0%
CATGGCAATGGGGCGGGGTG+GGG - chr7_3:68288622-68288641 None:intergenic 70.0%
GCATGGCAATGGGGCGGGGT+GGG - chr7_3:68288623-68288642 None:intergenic 70.0%
AATGGGGCGGGGTGGGGACG+GGG - chr7_3:68288616-68288635 None:intergenic 75.0%
CAATGGGGCGGGGTGGGGAC+GGG - chr7_3:68288617-68288636 None:intergenic 75.0%
GCAATGGGGCGGGGTGGGGA+CGG - chr7_3:68288618-68288637 None:intergenic 75.0%
GGCATGGCAATGGGGCGGGG+TGG - chr7_3:68288624-68288643 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 68288489 68292761 68288489 ID=Msa1119420;Name=Msa1119420
chr7_3 mRNA 68288489 68292761 68288489 ID=Msa1119420-mRNA-1;Parent=Msa1119420;Name=Msa1119420-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.8|0.66|0.83|1|1|6|316|446
chr7_3 exon 68288489 68288606 68288489 ID=Msa1119420-mRNA-1:exon:17126;Parent=Msa1119420-mRNA-1
chr7_3 exon 68289405 68289454 68289405 ID=Msa1119420-mRNA-1:exon:17127;Parent=Msa1119420-mRNA-1
chr7_3 exon 68289605 68289721 68289605 ID=Msa1119420-mRNA-1:exon:17128;Parent=Msa1119420-mRNA-1
chr7_3 exon 68290314 68290621 68290314 ID=Msa1119420-mRNA-1:exon:17129;Parent=Msa1119420-mRNA-1
chr7_3 exon 68291401 68291645 68291401 ID=Msa1119420-mRNA-1:exon:17130;Parent=Msa1119420-mRNA-1
chr7_3 exon 68291943 68292761 68291943 ID=Msa1119420-mRNA-1:exon:17131;Parent=Msa1119420-mRNA-1
chr7_3 CDS 68288489 68288606 68288489 ID=Msa1119420-mRNA-1:cds;Parent=Msa1119420-mRNA-1
chr7_3 CDS 68289405 68289454 68289405 ID=Msa1119420-mRNA-1:cds;Parent=Msa1119420-mRNA-1
chr7_3 CDS 68289605 68289721 68289605 ID=Msa1119420-mRNA-1:cds;Parent=Msa1119420-mRNA-1
chr7_3 CDS 68290314 68290621 68290314 ID=Msa1119420-mRNA-1:cds;Parent=Msa1119420-mRNA-1
chr7_3 CDS 68291401 68291645 68291401 ID=Msa1119420-mRNA-1:cds;Parent=Msa1119420-mRNA-1
chr7_3 CDS 68291943 68292445 68291943 ID=Msa1119420-mRNA-1:cds;Parent=Msa1119420-mRNA-1
chr7_3 three_prime_UTR 68292446 68292761 68292446 ID=Msa1119420-mRNA-1:three_prime_utr;Parent=Msa1119420-mRNA-1
Gene Sequence

>Msa1119420

ATGGGGCGGGGATACCCGAACCCATCGGGGACGGGGATGAGATTCAATTTCTCATCCCCGTTGGGTATGGGTAGGGTAACGGGTAAGTATATTCAAATCGGGTATGGGGACGGGGAAGGCTTAATCATGGCTTCGGCTACTTTCTCTGTAGCCAACCCAGCTCTTAAGGTAAATGGGAAAGGCTTTTCTGAATTCTCTGGTCTCCGTAACTCATCAGGATATCTTCCCTTTTCTAGAAAAACTTCAGATGACTTTCATTCTGTCATTTCCTTCCAAACCAATGCAGTTGGAAGCAGTGGAAGATCCAGGAAAGGTGTTGTAGTGGAAGCAAAAATTAAGGTAGCCATAAACGGATTTGGAAGGATTGGAAGGAACTTCTTGAGATGTTGGCATGGTCGTAAGGACTCGCCTCTTGATGTCATTGCCATCAATGACACCGGAGGTGTAAAGCAAGCCTCTCACCTTCTCAAGTATGATTCTACACTTGGAATCTTTGATGCTGATGTTAAACCTGTTGGCACTGATGGTATCTCTGTTGATGGAAAGGTTATCAAAGTTGTCTCTGACCGTAACCCTGCCAACCTTCCTTGGGGGGAGTTGGGAATAGATTTGGTGATTGAAGGAACTGGAGTGTTTGTGGACAGAGAAGGTGCTGGGAAGCACATTACAGCAGGAGCTAAGAAGGTACTCATCACAGCCCCCGGAAAAGGAGACATCCCAACTTACGTGGTTGGTGTCAATGCTGATGGTTACAGCCACGCTGATGATATCATCAGCAACGCTTCTTGCACCACTAACTGCCTTGCTCCCTTTGTCAAGGTCCTTGATCAGAAATTCGGTATCATCAAGGGTACCATGACTACCACTCACTCCTACACCGGTGACCAAAGGCTTCTTGATGCTAGCCACCGTGATCTAAGGCGTGCAAGAGCAGCAGCTCTTAACATTGTGCCAACTTCAACCGGAGCAGCAAAGGCAGTGGCCCTTGTCCTCCCATCACTCAAAGGCAAGCTCAACGGTATTGCACTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGACCTCGTTGTTCAAGTCTCAAAGAAGACATTTGCTGAAGAAGTGAATGAGGCTTTCAGAGACAGTGCAGCCAAGGAGCTGAGCGGTATTCTCTCAGTTTGTGATGAGCCACTTGTGTCTGTAGATTTTAGGTGCACTGATGTGTCCTCAACCGTTGATTCGTCATTGACAATGGTCATGGGAGATGACATGGTGAAGGTGATTGCTTGGTATGATAATGAATGGGGTTACTCACAAAGGGTTGTTGATTTGGCTGACATTGTTGCCAATAACTGGAAGTGA

Protein sequence

>Msa1119420

MGRGYPNPSGTGMRFNFSSPLGMGRVTGKYIQIGYGDGEGLIMASATFSVANPALKVNGKGFSEFSGLRNSSGYLPFSRKTSDDFHSVISFQTNAVGSSGRSRKGVVVEAKIKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKVIKVVSDRNPANLPWGELGIDLVIEGTGVFVDREGAGKHITAGAKKVLITAPGKGDIPTYVVGVNADGYSHADDIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPSLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNEAFRDSAAKELSGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK*