AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0031800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0031800 MtrunA17_Chr1g0189981 90.291 103 9 1 1 102 1 103 7.17e-61 189
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 114 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCTTCCTCCTGATTATTT+TGG 0.114294 1_1:-58621364 Msa0031800:CDS
TTTGCCTAATTAGGAAAATT+AGG 0.187671 1_1:-58618517 Msa0031800:three_prime_UTR
TATTCTATGTTTGCCTAATT+AGG 0.194396 1_1:-58618526 Msa0031800:three_prime_UTR
ATCATCCTCCCGCTCTTTAT+TGG 0.194856 1_1:-58620690 Msa0031800:three_prime_UTR
AATTTGTTGGAGAAGAGTTT+TGG 0.277910 1_1:+58621497 None:intergenic
GGGTGTTATAGAGCAGAATT+TGG 0.279280 1_1:+58621683 None:intergenic
AAACGCAGAGTGAGAGGTTT+TGG 0.282061 1_1:+58621564 None:intergenic
GGATTTACATTTACCTGATT+TGG 0.287385 1_1:+58620628 None:intergenic
TTGTTGTCCGCACTTACTTC+AGG 0.292145 1_1:-58618983 Msa0031800:three_prime_UTR
ACACCCACTAAAGCAAATAT+TGG 0.292433 1_1:-58619334 Msa0031800:three_prime_UTR
TACCAAACTCATGACATAAT+TGG 0.293175 1_1:-58618818 Msa0031800:three_prime_UTR
GTTTGGTATCTGCTGGAAAA+AGG 0.300905 1_1:-58620522 Msa0031800:three_prime_UTR
AGAATATGATAATACAATAA+AGG 0.313829 1_1:+58618543 None:intergenic
TCTTAGTGTGGTAAAGAGTT+AGG 0.334926 1_1:-58620758 Msa0031800:intron
ATGAGTTTGGTACTTCATTA+TGG 0.335297 1_1:+58618829 None:intergenic
GGAGTTGGGTTGTTTATTAT+CGG 0.347093 1_1:-58618580 Msa0031800:three_prime_UTR
CACCCACTAAAGCAAATATT+GGG 0.366047 1_1:-58619333 Msa0031800:three_prime_UTR
TGAAAGAAACTCGACAAATC+TGG 0.366054 1_1:+58618745 None:intergenic
ATTGGCGAAACTTCCTTTGA+TGG 0.373491 1_1:-58620672 Msa0031800:three_prime_UTR
GTTGGAGAAATGAGAGGATT+GGG 0.384144 1_1:+58618458 None:intergenic
GGCCCCAATATTTGCTTTAG+TGG 0.386383 1_1:+58619330 None:intergenic
CTTAGCACTTGGAAGGCGTT+TGG 0.387050 1_1:-58620539 Msa0031800:intron
AGAATTTAGTAGTCACAGTT+AGG 0.397290 1_1:-58618433 Msa0031800:three_prime_UTR
AATGACTTACGGCAATTTGT+TGG 0.403887 1_1:+58621484 None:intergenic
TGTTGTCCGCACTTACTTCA+GGG 0.405507 1_1:-58618982 Msa0031800:three_prime_UTR
TGCCAATTATGTCATGAGTT+TGG 0.409945 1_1:+58618816 None:intergenic
TTGACAGGCACTGCCAAATC+AGG 0.413487 1_1:-58620641 Msa0031800:intron
GAATATGATAATACAATAAA+GGG 0.417163 1_1:+58618544 None:intergenic
ACGTCTAATCGAAGATCGTT+GGG 0.419902 1_1:+58621334 None:intergenic
CCTTTCAAATGGACCTGTCT+TGG 0.420149 1_1:-58621177 Msa0031800:three_prime_UTR
TTTCAGTCAATGGGGCAGTA+TGG 0.426025 1_1:-58620499 Msa0031800:three_prime_UTR
TTATTTGGCTGCAGTCTTTG+AGG 0.433540 1_1:-58619039 Msa0031800:intron
GGAATGATTGGGTGTGATGT+TGG 0.436521 1_1:+58621652 None:intergenic
ATTGGTAGAAGTGGTGGTAT+GGG 0.438062 1_1:+58621605 None:intergenic
CAAAGGAACATTGTTAATGA+TGG 0.440225 1_1:+58621249 None:intergenic
CAACCTCCCATGCTCGAGAT+AGG 0.440240 1_1:+58620720 None:intergenic
AATTGGTAGAAGTGGTGGTA+TGG 0.441340 1_1:+58621604 None:intergenic
ACTAATTGTATGGAAATGTT+AGG 0.444025 1_1:+58621274 None:intergenic
GGGTCAGGTTCTGTGGAACT+AGG 0.447548 1_1:+58621519 None:intergenic
TTATGTCTGCTTCGTTTGCT+CGG 0.449141 1_1:-58618911 Msa0031800:three_prime_UTR
ATGAAAAGTTGTATTGGAAT+TGG 0.450386 1_1:+58621587 None:intergenic
AATGATGGAAACTAATTGTA+TGG 0.452208 1_1:+58621264 None:intergenic
GGGAACTTCCCAAAATAATC+AGG 0.456540 1_1:+58621355 None:intergenic
TATTTGGCTGCAGTCTTTGA+GGG 0.457087 1_1:-58619038 Msa0031800:intron
GCAGCATTCGACCTTTCAAA+TGG 0.467100 1_1:-58621188 Msa0031800:three_prime_UTR
AGTTGGAGAAATGAGAGGAT+TGG 0.467324 1_1:+58618457 None:intergenic
GCCCCAATATTTGCTTTAGT+GGG 0.468160 1_1:+58619331 None:intergenic
GGAAGGCGTTTGGTATCTGC+TGG 0.470525 1_1:-58620529 Msa0031800:three_prime_UTR
AAGTTGTGGAAGGGAATGAT+TGG 0.470974 1_1:+58621640 None:intergenic
TTAGGAATTCAGTTAGAAGT+TGG 0.473619 1_1:-58618415 Msa0031800:three_prime_UTR
TACTCTTATGTAAATCAGAA+TGG 0.473826 1_1:-58618360 None:intergenic
GCAAAAGCAATGATTGCGGC+TGG 0.477756 1_1:-58619548 Msa0031800:three_prime_UTR
ACTGCAGTTTGGAGCACTGC+AGG 0.479464 1_1:-58619365 Msa0031800:intron
GAATGATTGGGTGTGATGTT+GGG 0.480853 1_1:+58621653 None:intergenic
TTGATGGAGGCTAATTTGAC+AGG 0.487664 1_1:-58620656 Msa0031800:three_prime_UTR
TTTAACATTAGAATATTGGC+AGG 0.497436 1_1:+58618717 None:intergenic
GGGGAATCTGAGGGAAGTTG+TGG 0.501866 1_1:+58621626 None:intergenic
TTCTGTGGAACTAGGAGAGT+TGG 0.506705 1_1:+58621527 None:intergenic
AAATGGACCTGTCTTGGATG+AGG 0.510984 1_1:-58621171 Msa0031800:intron
TTTGCTTCTTAGCACTTGGA+AGG 0.517086 1_1:-58620546 Msa0031800:intron
CAGCTTCAATCAATCAAGGT+TGG 0.520359 1_1:-58621738 Msa0031800:five_prime_UTR
GTGACTACTAAATTCTGAGT+TGG 0.523949 1_1:+58618440 None:intergenic
TTGAAATAGGATTCTTACAT+GGG 0.526346 1_1:-58619219 Msa0031800:intron
TTGGTAGAAGTGGTGGTATG+GGG 0.527039 1_1:+58621606 None:intergenic
TACGTCTAATCGAAGATCGT+TGG 0.527129 1_1:+58621333 None:intergenic
TTTGAAATAGGATTCTTACA+TGG 0.528276 1_1:-58619220 Msa0031800:intron
TGCTAAACCTATCTCGAGCA+TGG 0.530356 1_1:-58620727 Msa0031800:three_prime_UTR
GAGCAGAATTTGGAGAGAGA+AGG 0.535476 1_1:+58621693 None:intergenic
AATCTGAGGGAAGTTGTGGA+AGG 0.536856 1_1:+58621630 None:intergenic
GGTGTGATGTTGGGAAAGAG+TGG 0.537129 1_1:+58621662 None:intergenic
TGGTAGAAGTGGTGGTATGG+GGG 0.538795 1_1:+58621607 None:intergenic
TTGTCCGCACTTACTTCAGG+GGG 0.540032 1_1:-58618980 Msa0031800:three_prime_UTR
TTGGAGAAATGAGAGGATTG+GGG 0.540442 1_1:+58618459 None:intergenic
TTGTTCATCTATTACTGAAG+AGG 0.545963 1_1:+58619502 None:intergenic
CACACAGCTTCAATCAATCA+AGG 0.551618 1_1:-58621742 Msa0031800:five_prime_UTR
GTCAAATTAGCCTCCATCAA+AGG 0.557161 1_1:+58620659 None:intergenic
TGTATTGGAATTGGTAGAAG+TGG 0.558810 1_1:+58621596 None:intergenic
TGGCCAAGGTGAGACACAAA+AGG 0.559663 1_1:-58620479 Msa0031800:intron
AGAGCAAAACGCAGAGTGAG+AGG 0.564342 1_1:+58621558 None:intergenic
CAATGCTTTGATGCTTGCTA+AGG 0.565665 1_1:-58619141 Msa0031800:intron
AGTTGTGGAAGGGAATGATT+GGG 0.568171 1_1:+58621641 None:intergenic
GTGTGATGTTGGGAAAGAGT+GGG 0.572497 1_1:+58621663 None:intergenic
ATCTGAGGGAAGTTGTGGAA+GGG 0.573855 1_1:+58621631 None:intergenic
AGAGCGGGAGGATGATGTAT+CGG 0.576481 1_1:+58620697 None:intergenic
CCAAGACAGGTCCATTTGAA+AGG 0.578051 1_1:+58621177 None:intergenic
GCTAAACCTATCTCGAGCAT+GGG 0.582386 1_1:-58620726 Msa0031800:three_prime_UTR
TTCTGAGTTGGAGAAATGAG+AGG 0.583991 1_1:+58618452 None:intergenic
GCATACTGCAAAGAACTCTC+CGG 0.584824 1_1:+58619170 None:intergenic
AAAACACGTTATCTAGTTTG+GGG 0.585646 1_1:-58621837 Msa0031800:five_prime_UTR
GGCGAAACTTCCTTTGATGG+AGG 0.586547 1_1:-58620669 Msa0031800:three_prime_UTR
AAGTTTCGCCAATAAAGAGC+GGG 0.589362 1_1:+58620682 None:intergenic
GTTGTCCGCACTTACTTCAG+GGG 0.602962 1_1:-58618981 Msa0031800:three_prime_UTR
GTACTAACCTCATCCAAGAC+AGG 0.602962 1_1:+58621164 None:intergenic
CAAAAGCAATGATTGCGGCT+GGG 0.602963 1_1:-58619547 Msa0031800:three_prime_UTR
TCAATGGGGCAGTATGGCCA+AGG 0.614529 1_1:-58620493 Msa0031800:three_prime_UTR
AAACCTATCTCGAGCATGGG+AGG 0.614986 1_1:-58620723 Msa0031800:three_prime_UTR
ATTTGGCTGCAGTCTTTGAG+GGG 0.618279 1_1:-58619037 Msa0031800:intron
CAGACATGATTACAAAGCAA+AGG 0.618987 1_1:+58621232 None:intergenic
CTTACATGGGAGATAGCTCA+AGG 0.624331 1_1:-58619206 Msa0031800:three_prime_UTR
TGGAGAAATGAGAGGATTGG+GGG 0.633150 1_1:+58618460 None:intergenic
ACACAGAGCAAAGGATTGCA+CGG 0.639587 1_1:+58621306 None:intergenic
TGTTAAGCTACACAGAGCAA+AGG 0.641921 1_1:+58621297 None:intergenic
TCAAGGAATTCAAAACACTC+CGG 0.647748 1_1:-58619189 Msa0031800:three_prime_UTR
AACTTCCCAAAATAATCAGG+AGG 0.648504 1_1:+58621358 None:intergenic
ATTGGAATTGGTAGAAGTGG+TGG 0.654750 1_1:+58621599 None:intergenic
TTTCGCCAATAAAGAGCGGG+AGG 0.665107 1_1:+58620685 None:intergenic
GAAGTTTCGCCAATAAAGAG+CGG 0.677236 1_1:+58620681 None:intergenic
GATCGCAAAAGCAATGATTG+CGG 0.686088 1_1:-58619552 Msa0031800:three_prime_UTR
TGTCCGCACTTACTTCAGGG+GGG 0.688499 1_1:-58618979 Msa0031800:three_prime_UTR
GGTTGGAATGAAGACAACAA+TGG 0.689073 1_1:-58621721 Msa0031800:exon
ACCCACTAAAGCAAATATTG+GGG 0.690448 1_1:-58619332 Msa0031800:three_prime_UTR
TGATTTACATAAGAGTACAG+TGG 0.704183 1_1:+58618366 None:intergenic
CGTCTAATCGAAGATCGTTG+GGG 0.704730 1_1:+58621335 None:intergenic
AGTAAGTGCGGACAACAACG+TGG 0.716152 1_1:+58618988 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATAGTGAACAAATTTT+AGG - chr1_1:58620120-58620139 Msa0031800:intron 15.0%
!!! ATTATACACAAATACTTTTA+CGG + chr1_1:58620187-58620206 None:intergenic 15.0%
!! AAAGAAAAGATAACAAAAAA+AGG + chr1_1:58620212-58620231 None:intergenic 15.0%
!!! CTGTTTTTTAATTACTATTA+CGG - chr1_1:58620502-58620521 Msa0031800:three_prime_UTR 15.0%
!! CTTACTAAAAAAAAATAACA+TGG + chr1_1:58620928-58620947 None:intergenic 15.0%
!!! CATGTTATTTTTTTTTAGTA+AGG - chr1_1:58620926-58620945 Msa0031800:intron 15.0%
!!! TAGTTTTAACATTAGAATAT+TGG + chr1_1:58621493-58621512 None:intergenic 15.0%
!!! ATTCAGTTTTAAATTTCTTA+TGG - chr1_1:58621531-58621550 Msa0031800:CDS 15.0%
!! GAATATGATAATACAATAAA+GGG + chr1_1:58621662-58621681 None:intergenic 15.0%
!! AGAATATGATAATACAATAA+AGG + chr1_1:58621663-58621682 None:intergenic 15.0%
!! AAACTATACATGAATGAAAA+AGG + chr1_1:58619243-58619262 None:intergenic 20.0%
!!! AAATTAAATTGAAGCATCTA+AGG - chr1_1:58619294-58619313 Msa0031800:intron 20.0%
!!! AATTAGCTTATAACTTACAA+GGG + chr1_1:58620004-58620023 None:intergenic 20.0%
!! AAGAAGAAAAAAAGTTGTAA+CGG + chr1_1:58620090-58620109 None:intergenic 20.0%
!! TTTCTCGTCAATTAAATAAA+AGG + chr1_1:58620376-58620395 None:intergenic 20.0%
!! AAAAATCACCATTTCAAATA+TGG + chr1_1:58620597-58620616 None:intergenic 20.0%
!! GCCTTAAATGTATAATTATT+TGG - chr1_1:58621149-58621168 Msa0031800:intron 20.0%
!! GCCAAATAATTATACATTTA+AGG + chr1_1:58621153-58621172 None:intergenic 20.0%
!!! ACATTGCTTACTATTTTTTA+CGG - chr1_1:58621190-58621209 Msa0031800:three_prime_UTR 20.0%
!!! AGTTTTAAATTTCTTATGGA+TGG - chr1_1:58621535-58621554 Msa0031800:CDS 20.0%
!!! AGTTATGTTTTCTTTGTAAA+GGG - chr1_1:58621578-58621597 Msa0031800:CDS 20.0%
!!! TATTCCTAATTTTCCTAATT+AGG + chr1_1:58621693-58621712 None:intergenic 20.0%
! AAAAAACACGTTATCTAGTT+TGG - chr1_1:58618364-58618383 Msa0031800:three_prime_UTR 25.0%
!! AAAAACACGTTATCTAGTTT+GGG - chr1_1:58618365-58618384 Msa0031800:three_prime_UTR 25.0%
! ATGAAAAGTTGTATTGGAAT+TGG + chr1_1:58618619-58618638 None:intergenic 25.0%
!! TTTTGGATGAAAAGTTGTAT+TGG + chr1_1:58618625-58618644 None:intergenic 25.0%
! ACTAATTGTATGGAAATGTT+AGG + chr1_1:58618932-58618951 None:intergenic 25.0%
!! AATGATGGAAACTAATTGTA+TGG + chr1_1:58618942-58618961 None:intergenic 25.0%
! ATAGTTGTTATGTACCTTTA+AGG - chr1_1:58619211-58619230 Msa0031800:three_prime_UTR 25.0%
! TTTCCAATTCCAAAATAGAA+TGG - chr1_1:58619391-58619410 Msa0031800:intron 25.0%
! TTCCAATTCCAAAATAGAAT+GGG - chr1_1:58619392-58619411 Msa0031800:intron 25.0%
! AATGGGTGTATTTGTTTAAT+GGG - chr1_1:58619409-58619428 Msa0031800:intron 25.0%
! ATGAATATACTTTCTTAGTG+TGG - chr1_1:58619433-58619452 Msa0031800:intron 25.0%
!! ATTCGTCTTTGAAAATTATG+TGG - chr1_1:58619606-58619625 Msa0031800:intron 25.0%
!! TTCGTCTTTGAAAATTATGT+GGG - chr1_1:58619607-58619626 Msa0031800:intron 25.0%
! TTACACTACTTAATATGTGT+TGG - chr1_1:58619750-58619769 Msa0031800:intron 25.0%
!! GAGAAAATGATTGACATTTT+TGG - chr1_1:58619805-58619824 Msa0031800:intron 25.0%
!! ATTAGCTTATAACTTACAAG+GGG + chr1_1:58620003-58620022 None:intergenic 25.0%
!! GAATTAGCTTATAACTTACA+AGG + chr1_1:58620005-58620024 None:intergenic 25.0%
! GTTATAAGCTAATTCAAACT+AGG - chr1_1:58620010-58620029 Msa0031800:intron 25.0%
!!! GTTGTTATTAGGTTTTAATG+CGG - chr1_1:58620150-58620169 Msa0031800:intron 25.0%
!! GAGAAACATTTTACATTACT+GGG - chr1_1:58620390-58620409 Msa0031800:intron 25.0%
!!! AGAGTCTTATTTTTCTCTTT+GGG + chr1_1:58620727-58620746 None:intergenic 25.0%
!!! TTTTCGCTAAACTTTGAAAT+AGG - chr1_1:58620971-58620990 Msa0031800:intron 25.0%
!! TTTGAAATAGGATTCTTACA+TGG - chr1_1:58620983-58621002 Msa0031800:intron 25.0%
! TTGAAATAGGATTCTTACAT+GGG - chr1_1:58620984-58621003 Msa0031800:intron 25.0%
! TAGTTAACAAAAGTAAGTTG+AGG + chr1_1:58621117-58621136 None:intergenic 25.0%
! TTTAACATTAGAATATTGGC+AGG + chr1_1:58621489-58621508 None:intergenic 25.0%
!! GAGTTATGTTTTCTTTGTAA+AGG - chr1_1:58621577-58621596 Msa0031800:CDS 25.0%
!!! AAAGGGAGTTTTTATTTTTG+AGG - chr1_1:58621595-58621614 Msa0031800:CDS 25.0%
!!! AGTTTTTATTTTTGAGGCAA+GGG - chr1_1:58621601-58621620 Msa0031800:CDS 25.0%
! TATTCTATGTTTGCCTAATT+AGG - chr1_1:58621677-58621696 Msa0031800:CDS 25.0%
! TTTGCCTAATTAGGAAAATT+AGG - chr1_1:58621686-58621705 Msa0031800:CDS 25.0%
! AAAACACGTTATCTAGTTTG+GGG - chr1_1:58618366-58618385 Msa0031800:three_prime_UTR 30.0%
!! ATTTGTTGGAGAAGAGTTTT+GGG + chr1_1:58618708-58618727 None:intergenic 30.0%
!!! AATTTGTTGGAGAAGAGTTT+TGG + chr1_1:58618709-58618728 None:intergenic 30.0%
GAACCAAAATGAATGACTTA+CGG + chr1_1:58618733-58618752 None:intergenic 30.0%
CAATGTAAATTCACACAAAC+TGG + chr1_1:58618807-58618826 None:intergenic 30.0%
TTTGTGTGAATTTACATTGC+AGG - chr1_1:58618808-58618827 Msa0031800:three_prime_UTR 30.0%
! ATCTTCCTCCTGATTATTTT+GGG - chr1_1:58618840-58618859 Msa0031800:three_prime_UTR 30.0%
CAAAGGAACATTGTTAATGA+TGG + chr1_1:58618957-58618976 None:intergenic 30.0%
!! CATTTTTAAGAGGCAATCAA+TGG + chr1_1:58619347-58619366 None:intergenic 30.0%
!!! ATAGCAGAGTCATTTTTAAG+AGG + chr1_1:58619357-58619376 None:intergenic 30.0%
! CAAATACACCCATTCTATTT+TGG + chr1_1:58619403-58619422 None:intergenic 30.0%
GAATGGGTGTATTTGTTTAA+TGG - chr1_1:58619408-58619427 Msa0031800:intron 30.0%
GGATTTACATTTACCTGATT+TGG + chr1_1:58619578-58619597 None:intergenic 30.0%
! TTCAAAGACGAATTTTCTCA+TGG + chr1_1:58619599-58619618 None:intergenic 30.0%
! TCCTAATCTTGTTTGTTAGA+GGG - chr1_1:58620033-58620052 Msa0031800:intron 30.0%
TACTAAACTCTTACCATAGA+GGG + chr1_1:58620066-58620085 None:intergenic 30.0%
ATACTAAACTCTTACCATAG+AGG + chr1_1:58620067-58620086 None:intergenic 30.0%
! TAGGATAGCATGTTGTTATT+AGG - chr1_1:58620139-58620158 Msa0031800:intron 30.0%
GAAATCAATACGCTTCAATT+AGG + chr1_1:58620284-58620303 None:intergenic 30.0%
AATTAAATAAAAGGCCGGTA+TGG + chr1_1:58620367-58620386 None:intergenic 30.0%
TCGTCAATTAAATAAAAGGC+CGG + chr1_1:58620372-58620391 None:intergenic 30.0%
! CGAGAAACATTTTACATTAC+TGG - chr1_1:58620389-58620408 Msa0031800:intron 30.0%
! TTGTAGAAGCATGTTATGTT+TGG + chr1_1:58620425-58620444 None:intergenic 30.0%
TTATTGTGCACATAGGTAAT+AGG + chr1_1:58620533-58620552 None:intergenic 30.0%
ACCTATGTGCACAATAAAAA+TGG - chr1_1:58620536-58620555 Msa0031800:three_prime_UTR 30.0%
CAATGTTGCCATATTTGAAA+TGG - chr1_1:58620586-58620605 Msa0031800:intron 30.0%
ATCTAAGTAACATTGACATG+TGG - chr1_1:58620617-58620636 Msa0031800:intron 30.0%
TTGTTCATCTATTACTGAAG+AGG + chr1_1:58620704-58620723 None:intergenic 30.0%
!!! CAGAGTCTTATTTTTCTCTT+TGG + chr1_1:58620728-58620747 None:intergenic 30.0%
AGAGAAAAATAAGACTCTGA+AGG - chr1_1:58620729-58620748 Msa0031800:three_prime_UTR 30.0%
ACTAATCTGTATCTGTTTAG+CGG - chr1_1:58620758-58620777 Msa0031800:intron 30.0%
! AGCGAAAAACTAAGTTTTCT+CGG + chr1_1:58620959-58620978 None:intergenic 30.0%
ATGAGTTTGGTACTTCATTA+TGG + chr1_1:58621377-58621396 None:intergenic 30.0%
TACCAAACTCATGACATAAT+TGG - chr1_1:58621385-58621404 Msa0031800:intron 30.0%
!!! GAGTTTTTATTTTTGAGGCA+AGG - chr1_1:58621600-58621619 Msa0031800:CDS 30.0%
!!! GTTTTTATTTTTGAGGCAAG+GGG - chr1_1:58621602-58621621 Msa0031800:CDS 30.0%
AGAATTTAGTAGTCACAGTT+AGG - chr1_1:58621770-58621789 Msa0031800:five_prime_UTR 30.0%
TTAGGAATTCAGTTAGAAGT+TGG - chr1_1:58621788-58621807 Msa0031800:five_prime_UTR 30.0%
! TGATTTACATAAGAGTACAG+TGG + chr1_1:58621840-58621859 None:intergenic 30.0%
! ATTTTCTGTCGAAGTTTCAG+TGG - chr1_1:58618411-58618430 Msa0031800:three_prime_UTR 35.0%
TGTATTGGAATTGGTAGAAG+TGG + chr1_1:58618610-58618629 None:intergenic 35.0%
! TTTGTTGGAGAAGAGTTTTG+GGG + chr1_1:58618707-58618726 None:intergenic 35.0%
AATGACTTACGGCAATTTGT+TGG + chr1_1:58618722-58618741 None:intergenic 35.0%
! TTGCCGTAAGTCATTCATTT+TGG - chr1_1:58618727-58618746 Msa0031800:three_prime_UTR 35.0%
TTCACACAAACTGGTGAATT+GGG + chr1_1:58618798-58618817 None:intergenic 35.0%
ATTCACACAAACTGGTGAAT+TGG + chr1_1:58618799-58618818 None:intergenic 35.0%
! GATCTTCCTCCTGATTATTT+TGG - chr1_1:58618839-58618858 Msa0031800:three_prime_UTR 35.0%
AACTTCCCAAAATAATCAGG+AGG + chr1_1:58618848-58618867 None:intergenic 35.0%
CAGACATGATTACAAAGCAA+AGG + chr1_1:58618974-58618993 None:intergenic 35.0%
GAATATAACCACATGTATCG+TGG + chr1_1:58619158-58619177 None:intergenic 35.0%
! GTTGTTATGTACCTTTAAGG+TGG - chr1_1:58619214-58619233 Msa0031800:intron 35.0%
GAAAAAGGAAACCACCTTAA+AGG + chr1_1:58619228-58619247 None:intergenic 35.0%
! TGAAGCATCTAAGGTTTACA+TGG - chr1_1:58619303-58619322 Msa0031800:intron 35.0%
!!! CACCCATTCTATTTTGGAAT+TGG + chr1_1:58619397-58619416 None:intergenic 35.0%
TCTTAGTGTGGTAAAGAGTT+AGG - chr1_1:58619445-58619464 Msa0031800:intron 35.0%
TGGAAAAAGGTTTCAGTCAA+TGG - chr1_1:58619694-58619713 Msa0031800:intron 35.0%
GGAAAAAGGTTTCAGTCAAT+GGG - chr1_1:58619695-58619714 Msa0031800:intron 35.0%
GAAAAAGGTTTCAGTCAATG+GGG - chr1_1:58619696-58619715 Msa0031800:intron 35.0%
CACTACTTAATATGTGTTGG+TGG - chr1_1:58619753-58619772 Msa0031800:intron 35.0%
CTCATATCCAAATAGAGTGA+AGG - chr1_1:58619840-58619859 Msa0031800:intron 35.0%
ATATCCAAATAGAGTGAAGG+TGG - chr1_1:58619843-58619862 Msa0031800:intron 35.0%
! GTCCTAATCTTGTTTGTTAG+AGG - chr1_1:58620032-58620051 Msa0031800:intron 35.0%
ACCCTCTAACAAACAAGATT+AGG + chr1_1:58620037-58620056 None:intergenic 35.0%
!! AGCGTATTGATTTCAGACTA+TGG - chr1_1:58620290-58620309 Msa0031800:intron 35.0%
TGATTTCAGACTATGGTTAG+TGG - chr1_1:58620297-58620316 Msa0031800:intron 35.0%
AAAATGCACCCAAGAAAACA+GGG - chr1_1:58620325-58620344 Msa0031800:intron 35.0%
CATGTTATGTTTGGCATTCA+TGG + chr1_1:58620416-58620435 None:intergenic 35.0%
!!! GCCATTTTTATTGTGCACAT+AGG + chr1_1:58620540-58620559 None:intergenic 35.0%
ATTCAGCAAAATCAGTAACC+TGG - chr1_1:58620809-58620828 Msa0031800:intron 35.0%
ACACCCACTAAAGCAAATAT+TGG - chr1_1:58620869-58620888 Msa0031800:intron 35.0%
CACCCACTAAAGCAAATATT+GGG - chr1_1:58620870-58620889 Msa0031800:intron 35.0%
ACCCACTAAAGCAAATATTG+GGG - chr1_1:58620871-58620890 Msa0031800:intron 35.0%
CCCAAAAACAAATGCAATTG+CGG + chr1_1:58620897-58620916 None:intergenic 35.0%
!! CCGCAATTGCATTTGTTTTT+GGG - chr1_1:58620894-58620913 Msa0031800:intron 35.0%
TCAAGGAATTCAAAACACTC+CGG - chr1_1:58621014-58621033 Msa0031800:intron 35.0%
! AACAAAAGTAAGTTGAGGTG+CGG + chr1_1:58621112-58621131 None:intergenic 35.0%
TGCCAATTATGTCATGAGTT+TGG + chr1_1:58621390-58621409 None:intergenic 35.0%
TGAAAGAAACTCGACAAATC+TGG + chr1_1:58621461-58621480 None:intergenic 35.0%
! GGAGTTGGGTTGTTTATTAT+CGG - chr1_1:58621623-58621642 Msa0031800:CDS 35.0%
GTGACTACTAAATTCTGAGT+TGG + chr1_1:58621766-58621785 None:intergenic 35.0%
CACACAGCTTCAATCAATCA+AGG - chr1_1:58618461-58618480 Msa0031800:three_prime_UTR 40.0%
CAGCTTCAATCAATCAAGGT+TGG - chr1_1:58618465-58618484 Msa0031800:three_prime_UTR 40.0%
GGTTGGAATGAAGACAACAA+TGG - chr1_1:58618482-58618501 Msa0031800:three_prime_UTR 40.0%
! GGGTGTTATAGAGCAGAATT+TGG + chr1_1:58618523-58618542 None:intergenic 40.0%
GAATGATTGGGTGTGATGTT+GGG + chr1_1:58618553-58618572 None:intergenic 40.0%
AGTTGTGGAAGGGAATGATT+GGG + chr1_1:58618565-58618584 None:intergenic 40.0%
AAGTTGTGGAAGGGAATGAT+TGG + chr1_1:58618566-58618585 None:intergenic 40.0%
ATTGGTAGAAGTGGTGGTAT+GGG + chr1_1:58618601-58618620 None:intergenic 40.0%
AATTGGTAGAAGTGGTGGTA+TGG + chr1_1:58618602-58618621 None:intergenic 40.0%
ATTGGAATTGGTAGAAGTGG+TGG + chr1_1:58618607-58618626 None:intergenic 40.0%
GGGAACTTCCCAAAATAATC+AGG + chr1_1:58618851-58618870 None:intergenic 40.0%
ACGTCTAATCGAAGATCGTT+GGG + chr1_1:58618872-58618891 None:intergenic 40.0%
TACGTCTAATCGAAGATCGT+TGG + chr1_1:58618873-58618892 None:intergenic 40.0%
TGTTAAGCTACACAGAGCAA+AGG + chr1_1:58618909-58618928 None:intergenic 40.0%
TAGCACCAATACCATGTTGA+AGG - chr1_1:58619082-58619101 Msa0031800:intron 40.0%
AAGTTTCGCCAATAAAGAGC+GGG + chr1_1:58619524-58619543 None:intergenic 40.0%
GAAGTTTCGCCAATAAAGAG+CGG + chr1_1:58619525-58619544 None:intergenic 40.0%
ATTGGCGAAACTTCCTTTGA+TGG - chr1_1:58619531-58619550 Msa0031800:three_prime_UTR 40.0%
! GTCAAATTAGCCTCCATCAA+AGG + chr1_1:58619547-58619566 None:intergenic 40.0%
TTGATGGAGGCTAATTTGAC+AGG - chr1_1:58619547-58619566 Msa0031800:three_prime_UTR 40.0%
! TGCTTTTGCTTCTTAGCACT+TGG - chr1_1:58619653-58619672 Msa0031800:intron 40.0%
TTTGCTTCTTAGCACTTGGA+AGG - chr1_1:58619657-58619676 Msa0031800:intron 40.0%
GTTTGGTATCTGCTGGAAAA+AGG - chr1_1:58619681-58619700 Msa0031800:intron 40.0%
! ATACCTTTTGTGTCTCACCT+TGG + chr1_1:58619730-58619749 None:intergenic 40.0%
GAATCCACCTTCACTCTATT+TGG + chr1_1:58619850-58619869 None:intergenic 40.0%
! CTGTTTTCTTGGGTGCATTT+TGG + chr1_1:58620326-58620345 None:intergenic 40.0%
CAAAATGCACCCAAGAAAAC+AGG - chr1_1:58620324-58620343 Msa0031800:intron 40.0%
GATCGCAAAAGCAATGATTG+CGG - chr1_1:58620651-58620670 Msa0031800:three_prime_UTR 40.0%
GCCCCAATATTTGCTTTAGT+GGG + chr1_1:58620875-58620894 None:intergenic 40.0%
!! GCCGCAATTGCATTTGTTTT+TGG - chr1_1:58620893-58620912 Msa0031800:intron 40.0%
! CAATGCTTTGATGCTTGCTA+AGG - chr1_1:58621062-58621081 Msa0031800:intron 40.0%
TTATTTGGCTGCAGTCTTTG+AGG - chr1_1:58621164-58621183 Msa0031800:intron 40.0%
TATTTGGCTGCAGTCTTTGA+GGG - chr1_1:58621165-58621184 Msa0031800:intron 40.0%
TTATGTCTGCTTCGTTTGCT+CGG - chr1_1:58621292-58621311 Msa0031800:CDS 40.0%
! TGCTCGGTTTTGCTTGTAAA+TGG - chr1_1:58621308-58621327 Msa0031800:CDS 40.0%
! TCGGTTTTGCTTGTAAATGG+TGG - chr1_1:58621311-58621330 Msa0031800:CDS 40.0%
TTGGAGAAATGAGAGGATTG+GGG + chr1_1:58621747-58621766 None:intergenic 40.0%
GTTGGAGAAATGAGAGGATT+GGG + chr1_1:58621748-58621767 None:intergenic 40.0%
AGTTGGAGAAATGAGAGGAT+TGG + chr1_1:58621749-58621768 None:intergenic 40.0%
! TTCTGAGTTGGAGAAATGAG+AGG + chr1_1:58621754-58621773 None:intergenic 40.0%
GAGCAGAATTTGGAGAGAGA+AGG + chr1_1:58618513-58618532 None:intergenic 45.0%
GTGTGATGTTGGGAAAGAGT+GGG + chr1_1:58618543-58618562 None:intergenic 45.0%
GGAATGATTGGGTGTGATGT+TGG + chr1_1:58618554-58618573 None:intergenic 45.0%
ATCTGAGGGAAGTTGTGGAA+GGG + chr1_1:58618575-58618594 None:intergenic 45.0%
AATCTGAGGGAAGTTGTGGA+AGG + chr1_1:58618576-58618595 None:intergenic 45.0%
TTGGTAGAAGTGGTGGTATG+GGG + chr1_1:58618600-58618619 None:intergenic 45.0%
! AAACGCAGAGTGAGAGGTTT+TGG + chr1_1:58618642-58618661 None:intergenic 45.0%
TTCTGTGGAACTAGGAGAGT+TGG + chr1_1:58618679-58618698 None:intergenic 45.0%
CGTCTAATCGAAGATCGTTG+GGG + chr1_1:58618871-58618890 None:intergenic 45.0%
ACACAGAGCAAAGGATTGCA+CGG + chr1_1:58618900-58618919 None:intergenic 45.0%
GCAGCATTCGACCTTTCAAA+TGG - chr1_1:58619015-58619034 Msa0031800:three_prime_UTR 45.0%
CCAAGACAGGTCCATTTGAA+AGG + chr1_1:58619029-58619048 None:intergenic 45.0%
CCTTTCAAATGGACCTGTCT+TGG - chr1_1:58619026-58619045 Msa0031800:three_prime_UTR 45.0%
AAATGGACCTGTCTTGGATG+AGG - chr1_1:58619032-58619051 Msa0031800:intron 45.0%
GTACTAACCTCATCCAAGAC+AGG + chr1_1:58619042-58619061 None:intergenic 45.0%
ACACGCCTTCAACATGGTAT+TGG + chr1_1:58619090-58619109 None:intergenic 45.0%
! ATCGTGGTGATGTGTAGTGT+AGG + chr1_1:58619142-58619161 None:intergenic 45.0%
ACACATCACCACGATACATG+TGG - chr1_1:58619147-58619166 Msa0031800:three_prime_UTR 45.0%
TGCTAAACCTATCTCGAGCA+TGG - chr1_1:58619476-58619495 Msa0031800:three_prime_UTR 45.0%
GCTAAACCTATCTCGAGCAT+GGG - chr1_1:58619477-58619496 Msa0031800:three_prime_UTR 45.0%
ATCATCCTCCCGCTCTTTAT+TGG - chr1_1:58619513-58619532 Msa0031800:three_prime_UTR 45.0%
TTTCAGTCAATGGGGCAGTA+TGG - chr1_1:58619704-58619723 Msa0031800:intron 45.0%
AGAGGGTCATTTACCCTCTA+TGG - chr1_1:58620050-58620069 Msa0031800:intron 45.0%
! CGCTGTTTCAACATCCATAC+CGG - chr1_1:58620350-58620369 Msa0031800:intron 45.0%
CAAAAGCAATGATTGCGGCT+GGG - chr1_1:58620656-58620675 Msa0031800:three_prime_UTR 45.0%
GGCCCCAATATTTGCTTTAG+TGG + chr1_1:58620876-58620895 None:intergenic 45.0%
CTTACATGGGAGATAGCTCA+AGG - chr1_1:58620997-58621016 Msa0031800:intron 45.0%
GCATACTGCAAAGAACTCTC+CGG + chr1_1:58621036-58621055 None:intergenic 45.0%
ATTTGGCTGCAGTCTTTGAG+GGG - chr1_1:58621166-58621185 Msa0031800:intron 45.0%
TTGTTGTCCGCACTTACTTC+AGG - chr1_1:58621220-58621239 Msa0031800:exon 45.0%
TGTTGTCCGCACTTACTTCA+GGG - chr1_1:58621221-58621240 Msa0031800:exon 45.0%
!!! ATTTTTGAGGCAAGGGGAGT+TGG - chr1_1:58621608-58621627 Msa0031800:CDS 45.0%
!!! TTTTTGAGGCAAGGGGAGTT+GGG - chr1_1:58621609-58621628 Msa0031800:CDS 45.0%
TGGAGAAATGAGAGGATTGG+GGG + chr1_1:58621746-58621765 None:intergenic 45.0%
GGTGTGATGTTGGGAAAGAG+TGG + chr1_1:58618544-58618563 None:intergenic 50.0%
TGGTAGAAGTGGTGGTATGG+GGG + chr1_1:58618599-58618618 None:intergenic 50.0%
AGAGCAAAACGCAGAGTGAG+AGG + chr1_1:58618648-58618667 None:intergenic 50.0%
!!! AGTTTTGGGGTCAGGTTCTG+TGG + chr1_1:58618694-58618713 None:intergenic 50.0%
!!! TGGAGAAGAGTTTTGGGGTC+AGG + chr1_1:58618702-58618721 None:intergenic 50.0%
! TACCATGTTGAAGGCGTGTC+CGG - chr1_1:58619091-58619110 Msa0031800:intron 50.0%
ATACACCAACGCGTGTCTAC+CGG + chr1_1:58619113-58619132 None:intergenic 50.0%
AAACCTATCTCGAGCATGGG+AGG - chr1_1:58619480-58619499 Msa0031800:three_prime_UTR 50.0%
AGAGCGGGAGGATGATGTAT+CGG + chr1_1:58619509-58619528 None:intergenic 50.0%
TTTCGCCAATAAAGAGCGGG+AGG + chr1_1:58619521-58619540 None:intergenic 50.0%
GGCGAAACTTCCTTTGATGG+AGG - chr1_1:58619534-58619553 Msa0031800:three_prime_UTR 50.0%
! TTGACAGGCACTGCCAAATC+AGG - chr1_1:58619562-58619581 Msa0031800:intron 50.0%
!! CTTAGCACTTGGAAGGCGTT+TGG - chr1_1:58619664-58619683 Msa0031800:intron 50.0%
TGGCCAAGGTGAGACACAAA+AGG - chr1_1:58619724-58619743 Msa0031800:intron 50.0%
! ACAGCGAGCCCTGTTTTCTT+GGG + chr1_1:58620336-58620355 None:intergenic 50.0%
! AACAGCGAGCCCTGTTTTCT+TGG + chr1_1:58620337-58620356 None:intergenic 50.0%
GCAAAAGCAATGATTGCGGC+TGG - chr1_1:58620655-58620674 Msa0031800:three_prime_UTR 50.0%
AGTAAGTGCGGACAACAACG+TGG + chr1_1:58621218-58621237 None:intergenic 50.0%
GTTGTCCGCACTTACTTCAG+GGG - chr1_1:58621222-58621241 Msa0031800:CDS 50.0%
TTGTCCGCACTTACTTCAGG+GGG - chr1_1:58621223-58621242 Msa0031800:CDS 50.0%
!!! TCAGGGGGGCTTGTTTTACT+TGG - chr1_1:58621238-58621257 Msa0031800:CDS 50.0%
GGGGAATCTGAGGGAAGTTG+TGG + chr1_1:58618580-58618599 None:intergenic 55.0%
GGTGGTATGGGGGAATCTGA+GGG + chr1_1:58618589-58618608 None:intergenic 55.0%
TGGTGGTATGGGGGAATCTG+AGG + chr1_1:58618590-58618609 None:intergenic 55.0%
GGGTCAGGTTCTGTGGAACT+AGG + chr1_1:58618687-58618706 None:intergenic 55.0%
TACCGGACACGCCTTCAACA+TGG + chr1_1:58619096-58619115 None:intergenic 55.0%
CAACCTCCCATGCTCGAGAT+AGG + chr1_1:58619486-58619505 None:intergenic 55.0%
!! GGAAGGCGTTTGGTATCTGC+TGG - chr1_1:58619674-58619693 Msa0031800:intron 55.0%
TCAATGGGGCAGTATGGCCA+AGG - chr1_1:58619710-58619729 Msa0031800:intron 55.0%
CCAAACTGCAGTTGGCAACC+AGG + chr1_1:58620830-58620849 None:intergenic 55.0%
CCTGGTTGCCAACTGCAGTT+TGG - chr1_1:58620827-58620846 Msa0031800:intron 55.0%
GCAGTGCTCCAAACTGCAGT+TGG + chr1_1:58620838-58620857 None:intergenic 55.0%
!! ACTGCAGTTTGGAGCACTGC+AGG - chr1_1:58620838-58620857 Msa0031800:intron 55.0%
TGTCCGCACTTACTTCAGGG+GGG - chr1_1:58621224-58621243 Msa0031800:CDS 55.0%
AAGCCCCCCTGAAGTAAGTG+CGG + chr1_1:58621230-58621249 None:intergenic 55.0%
CGTGTCCGGTAGACACGCGT+TGG - chr1_1:58619105-58619124 Msa0031800:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 58618363 58621862 58618363 ID=Msa0031800;Name=Msa0031800
chr1_1 mRNA 58618363 58621862 58618363 ID=Msa0031800-mRNA-1;Parent=Msa0031800;Name=Msa0031800-mRNA-1;_AED=0.26;_eAED=0.26;_QI=126|1|1|1|1|0.87|8|1206|138
chr1_1 exon 58618363 58619047 58618363 ID=Msa0031800-mRNA-1:exon:17971;Parent=Msa0031800-mRNA-1
chr1_1 exon 58619142 58619232 58619142 ID=Msa0031800-mRNA-1:exon:17970;Parent=Msa0031800-mRNA-1
chr1_1 exon 58619310 58619380 58619310 ID=Msa0031800-mRNA-1:exon:17969;Parent=Msa0031800-mRNA-1
chr1_1 exon 58619475 58619573 58619475 ID=Msa0031800-mRNA-1:exon:17968;Parent=Msa0031800-mRNA-1
chr1_1 exon 58620480 58620556 58620480 ID=Msa0031800-mRNA-1:exon:17967;Parent=Msa0031800-mRNA-1
chr1_1 exon 58620642 58620774 58620642 ID=Msa0031800-mRNA-1:exon:17966;Parent=Msa0031800-mRNA-1
chr1_1 exon 58621172 58621395 58621172 ID=Msa0031800-mRNA-1:exon:17965;Parent=Msa0031800-mRNA-1
chr1_1 exon 58621494 58621862 58621494 ID=Msa0031800-mRNA-1:exon:17964;Parent=Msa0031800-mRNA-1
chr1_1 five_prime_UTR 58621737 58621862 58621737 ID=Msa0031800-mRNA-1:five_prime_utr;Parent=Msa0031800-mRNA-1
chr1_1 CDS 58621494 58621736 58621494 ID=Msa0031800-mRNA-1:cds;Parent=Msa0031800-mRNA-1
chr1_1 CDS 58621222 58621395 58621222 ID=Msa0031800-mRNA-1:cds;Parent=Msa0031800-mRNA-1
chr1_1 three_prime_UTR 58621172 58621221 58621172 ID=Msa0031800-mRNA-1:three_prime_utr;Parent=Msa0031800-mRNA-1
chr1_1 three_prime_UTR 58620642 58620774 58620642 ID=Msa0031800-mRNA-1:three_prime_utr;Parent=Msa0031800-mRNA-1
chr1_1 three_prime_UTR 58620480 58620556 58620480 ID=Msa0031800-mRNA-1:three_prime_utr;Parent=Msa0031800-mRNA-1
chr1_1 three_prime_UTR 58619475 58619573 58619475 ID=Msa0031800-mRNA-1:three_prime_utr;Parent=Msa0031800-mRNA-1
chr1_1 three_prime_UTR 58619310 58619380 58619310 ID=Msa0031800-mRNA-1:three_prime_utr;Parent=Msa0031800-mRNA-1
chr1_1 three_prime_UTR 58619142 58619232 58619142 ID=Msa0031800-mRNA-1:three_prime_utr;Parent=Msa0031800-mRNA-1
chr1_1 three_prime_UTR 58618363 58619047 58618363 ID=Msa0031800-mRNA-1:three_prime_utr;Parent=Msa0031800-mRNA-1
Gene Sequence

>Msa0031800

ATGAAGACAACAATGGCTTCACCTTCTCTCTCCAAATTCTGCTCTATAACACCCACTCTTTCCCAACATCACACCCAATCATTCCCTTCCACAACTTCCCTCAGATTCCCCCATACCACCACTTCTACCAATTCCAATACAACTTTTCATCCAAAACCTCTCACTCTGCGTTTTGCTCTGACAGAGTCCAACTCTCCTAGTTCCACAGAACCTGACCCCAAAACTCTTCTCCAACAAATTGCCGACAGTTTTGATCTTCCTCCTGATTATTTTGGGAAGTTCCCCAACGATCTTCGATTAGACGTACGTGCCGTGCAATCCTTTGCTCTGTGTAGCTTAACACCTAACATTTCCATACAATTAGTTTCCATCATTAACAATGTTCCTTTGCTTTGTAATCATGTCTGTGCTCTCTGA

Protein sequence

>Msa0031800

MKTTMASPSLSKFCSITPTLSQHHTQSFPSTTSLRFPHTTTSTNSNTTFHPKPLTLRFALTESNSPSSTEPDPKTLLQQIADSFDLPPDYFGKFPNDLRLDVRAVQSFALCSLTPNISIQLVSIINNVPLLCNHVCAL*