AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1129510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129510 MtrunA17_Chr7g0274271 94.990 479 18 3 1 473 43 521 0.0 879
Msa1129510 MtrunA17_Chr1g0207371 88.608 79 9 0 299 377 1 79 4.19e-42 144
Msa1129510 MtrunA17_Chr2g0312531 26.720 378 233 14 77 427 56 416 3.80e-31 124
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129510 AT3G04650.1 69.021 439 128 4 35 471 53 485 0.0 612
Msa1129510 AT1G56000.1 27.763 371 226 15 77 421 23 377 4.11e-36 137
Msa1129510 AT1G56000.2 25.526 333 209 13 113 421 5 322 1.06e-25 107
Msa1129510 AT1G55980.2 26.708 322 196 14 77 374 23 328 3.71e-25 106
Msa1129510 AT1G55980.1 26.708 322 196 14 77 374 163 468 1.43e-24 106
Msa1129510 AT1G55980.3 23.944 284 179 12 113 374 5 273 5.33e-15 75.5

Find 176 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACATGGTTTATGGTTTA+TGG 0.113927 7_3:+81462022 None:intergenic
TTCATTTGTTTAGCAATTAA+TGG 0.158218 7_3:+81460700 None:intergenic
CAGCAATTTCTTGGTATTAT+TGG 0.162646 7_3:+81460422 None:intergenic
TTCAGACCAAACATGGTTTA+TGG 0.180482 7_3:+81462015 None:intergenic
GTTCCTCAAACGCTGCTAAA+AGG 0.214975 7_3:+81460523 None:intergenic
AGTAAATTGGAGCCATTTAA+TGG 0.238781 7_3:-81460974 Msa1129510:CDS
TTTCTAAGTACTGCTGCTTA+TGG 0.240911 7_3:-81460366 Msa1129510:CDS
AGTTGGAGCTTCGTATAAAA+AGG 0.246702 7_3:+81459950 None:intergenic
AGCCTTCGCCACGGTGAAAA+TGG 0.249786 7_3:-81461926 Msa1129510:CDS
AAGACTTATTGATGATTCTT+TGG 0.269849 7_3:-81461659 Msa1129510:CDS
ATTGGACAATTCCCAGGTTT+GGG 0.284130 7_3:-81459276 Msa1129510:CDS
ATGTGGCACTTGAGTGAAAA+TGG 0.291266 7_3:-81460950 Msa1129510:CDS
TTTATACGAAGCTCCAACTA+TGG 0.297002 7_3:-81459946 Msa1129510:intron
CTGGGAAGCCAGCAATTTCT+TGG 0.306680 7_3:+81460413 None:intergenic
TGTTAATGTTTGGTTGGATA+AGG 0.312436 7_3:-81461581 Msa1129510:CDS
CCTTGCATCTTTGATCCCTT+TGG 0.312753 7_3:-81459648 Msa1129510:CDS
AGGAAGATGGACGGTTGATT+AGG 0.313784 7_3:+81461953 None:intergenic
AAGTGCCACATCCCATTAAA+TGG 0.331387 7_3:+81460962 None:intergenic
AGAGGATCTTCTGCGGGGTT+TGG 0.337197 7_3:+81461888 None:intergenic
GGCTGGAATTGAGTTCAATA+TGG 0.346393 7_3:-81460548 Msa1129510:CDS
TTTGATCCCTTTGGAAGGGC+TGG 0.351182 7_3:-81459639 Msa1129510:CDS
CCACTGGAAGGGCATGATAT+TGG 0.357198 7_3:-81459294 Msa1129510:CDS
TATTGGACAATTCCCAGGTT+TGG 0.357408 7_3:-81459277 Msa1129510:CDS
TGAAGCTGTTGAGGGGTATA+AGG 0.358356 7_3:+81459055 None:intergenic
TCAAAGATGCAAGGAACTTC+AGG 0.364700 7_3:+81459657 None:intergenic
GACACTGGTATTCATGGTCT+TGG 0.368585 7_3:-81461697 Msa1129510:CDS
TCATGGTCTTGGAGGAAGAT+TGG 0.376531 7_3:-81461686 Msa1129510:CDS
ACTTTGACTCTTACCATAGT+TGG 0.379168 7_3:+81459933 None:intergenic
GTTAATGTTTGGTTGGATAA+GGG 0.379633 7_3:-81461580 Msa1129510:CDS
TGTTTGGTTGGATAAGGGTT+TGG 0.386223 7_3:-81461575 Msa1129510:CDS
ACTTGGCAAGTTCATATACT+TGG 0.387565 7_3:+81459229 None:intergenic
CATAAACCATAAACCATGTT+TGG 0.391811 7_3:-81462021 Msa1129510:exon
ACCGTGCTGGATCAGTAAAT+TGG 0.400349 7_3:-81460987 Msa1129510:CDS
CTTCTGCGGGGTTTGGAGGA+TGG 0.404083 7_3:+81461895 None:intergenic
AAACCAACAGCAAACTCTTC+AGG 0.409215 7_3:+81459333 None:intergenic
AGTGACTTGTTCTTGTTTGA+AGG 0.416763 7_3:+81461831 None:intergenic
TATGAGCACCATAGCCTACT+TGG 0.417255 7_3:+81459212 None:intergenic
GTAAATTGGAGCCATTTAAT+GGG 0.420332 7_3:-81460973 Msa1129510:CDS
AACCGCTTGCTTATGACATC+GGG 0.420523 7_3:-81460727 Msa1129510:CDS
CATGGTCTTGGAGGAAGATT+GGG 0.422905 7_3:-81461685 Msa1129510:CDS
CAACCTAACCTCAGAGAGTA+AGG 0.424200 7_3:+81461438 None:intergenic
AGACCGGTGACGTTACTTCC+AGG 0.424231 7_3:+81459128 None:intergenic
CAGGGTCAGTTCCGAGACTT+TGG 0.424302 7_3:+81459352 None:intergenic
TTGCTGAAATTGTTAATGTT+TGG 0.427289 7_3:-81461591 Msa1129510:CDS
ATATGAAATGAATCTTCTAT+TGG 0.428808 7_3:+81459171 None:intergenic
AACAGTGAGGACCGTCACTC+TGG 0.431628 7_3:+81460394 None:intergenic
GGAACTTCAGGTGTGTTAGT+TGG 0.434559 7_3:+81459669 None:intergenic
CCACGAGTAGCTATATATCT+TGG 0.446647 7_3:+81461481 None:intergenic
AACTCTCCGTTGGGAGGGAA+GGG 0.446815 7_3:-81459079 Msa1129510:three_prime_UTR
TTTACGAGAAGTTCCGTAAG+AGG 0.449507 7_3:+81461870 None:intergenic
ATATGTGGTGATTGGCTGCT+AGG 0.461805 7_3:-81459615 Msa1129510:CDS
TTCCTCAAACGCTGCTAAAA+GGG 0.463192 7_3:+81460524 None:intergenic
AAACTCTCCGTTGGGAGGGA+AGG 0.463332 7_3:-81459080 Msa1129510:three_prime_UTR
GGATCTTCTGCGGGGTTTGG+AGG 0.463723 7_3:+81461891 None:intergenic
CATCTTTGATCCCTTTGGAA+GGG 0.464319 7_3:-81459643 Msa1129510:CDS
GAACCACTTGTCGGCATCAT+CGG 0.467385 7_3:-81461787 Msa1129510:CDS
GCGAAGGCTGTTGAGGAAGA+TGG 0.468188 7_3:+81461940 None:intergenic
CAATAATACCAAGAAATTGC+TGG 0.469630 7_3:-81460421 Msa1129510:CDS
CTCACAAAAGCTCCTTCAAA+AGG 0.471085 7_3:+81460471 None:intergenic
GCATCTTTGATCCCTTTGGA+AGG 0.471178 7_3:-81459644 Msa1129510:CDS
TTGATCCCTTTGGAAGGGCT+GGG 0.471633 7_3:-81459638 Msa1129510:CDS
GTAAAGGAAGGCATGCTAGA+AGG 0.474473 7_3:-81460016 Msa1129510:CDS
ATAAGGGTTTGGTTCGAGAA+TGG 0.479869 7_3:-81461564 Msa1129510:CDS
AGTATATGAACTTGCCAAGT+AGG 0.479981 7_3:-81459226 Msa1129510:exon
AACCAACAGCAAACTCTTCA+GGG 0.481872 7_3:+81459334 None:intergenic
TCCGTAAGAGGATCTTCTGC+GGG 0.484423 7_3:+81461882 None:intergenic
ATCATCGGCGGTGGTATCTC+CGG 0.491348 7_3:-81461772 Msa1129510:CDS
ACTTCTGTATTCTCTAGAAA+AGG 0.493880 7_3:+81460495 None:intergenic
CATGATATTGGACAATTCCC+AGG 0.495655 7_3:-81459282 Msa1129510:CDS
GTCATTACATGAAGCTGTTG+AGG 0.496356 7_3:+81459046 None:intergenic
TTTGGAAGGGCTGGGATATG+TGG 0.496617 7_3:-81459630 Msa1129510:CDS
ATTAATTGCTAAACAAATGA+AGG 0.496646 7_3:-81460698 Msa1129510:intron
GGGTTTGGTTCGAGAATGGA+AGG 0.500510 7_3:-81461560 Msa1129510:CDS
ACAAGTGGTTCGTCGGAGAA+AGG 0.501845 7_3:+81461799 None:intergenic
GGGCTGGGATATGTGGTGAT+TGG 0.502331 7_3:-81459623 Msa1129510:CDS
TCATTACATGAAGCTGTTGA+GGG 0.508601 7_3:+81459047 None:intergenic
ACTCTCCGTTGGGAGGGAAG+GGG 0.513116 7_3:-81459078 Msa1129510:three_prime_UTR
TGCTGATTCCTTACTCTCTG+AGG 0.515444 7_3:-81461446 Msa1129510:intron
CACCGTGGCGAAGGCTGTTG+AGG 0.516137 7_3:+81461933 None:intergenic
GATGGACGGTTGATTAGGTA+TGG 0.520975 7_3:+81461958 None:intergenic
CTTGGCAAGTTCATATACTT+GGG 0.523177 7_3:+81459230 None:intergenic
TAACCGCTTGCTTATGACAT+CGG 0.524146 7_3:-81460728 Msa1129510:CDS
TTCTCCGACGAACCACTTGT+CGG 0.524522 7_3:-81461796 Msa1129510:CDS
TGGAGCCATTTAATGGGATG+TGG 0.526525 7_3:-81460967 Msa1129510:CDS
TGTTACAGCAACAAGGGTAA+AGG 0.528484 7_3:-81460032 Msa1129510:CDS
GCTGCTAGGTTCTAATATAG+AGG 0.529461 7_3:-81459601 Msa1129510:CDS
CTGCGGGGTTTGGAGGATGG+TGG 0.531437 7_3:+81461898 None:intergenic
TGAAACTGAAACTCTCCGTT+GGG 0.533656 7_3:-81459088 Msa1129510:three_prime_UTR
ACTGGTATTCATGGTCTTGG+AGG 0.535741 7_3:-81461694 Msa1129510:CDS
ATAAGCAGCAGTACTTAGAA+AGG 0.536774 7_3:+81460368 None:intergenic
GGCTATGGTGCTCATAAAGC+AGG 0.539827 7_3:-81459205 Msa1129510:three_prime_UTR
CGAGTAGCTATATATCTTGG+AGG 0.540308 7_3:+81461484 None:intergenic
GAATCATGAGTTTCAACCAC+TGG 0.544214 7_3:-81459310 Msa1129510:CDS
ATGCGCAATGGAAATTCCCC+TGG 0.544629 7_3:-81459146 Msa1129510:three_prime_UTR
GCTGGAATTGAGTTCAATAT+GGG 0.547006 7_3:-81460547 Msa1129510:CDS
AGAGTGACGGTCCTCACTGT+TGG 0.547828 7_3:-81460392 Msa1129510:CDS
TGAAATTGTTAATGTTTGGT+TGG 0.553129 7_3:-81461587 Msa1129510:CDS
GAAGATAGCGCAAATGAGAC+CGG 0.553399 7_3:+81461753 None:intergenic
ATGAATACCAGTGTCGAAAA+CGG 0.555330 7_3:+81461705 None:intergenic
GATTAGGTATGGAGCTGTGG+AGG 0.559561 7_3:+81461969 None:intergenic
AGGGGAATTTCCATTGCGCA+TGG 0.560144 7_3:+81459148 None:intergenic
GCTATATATCTTGGAGGAGA+GGG 0.561504 7_3:+81461490 None:intergenic
TTGAAACTGAAACTCTCCGT+TGG 0.562346 7_3:-81459089 Msa1129510:three_prime_UTR
GACCCTGAAGAGTTTGCTGT+TGG 0.562962 7_3:-81459336 Msa1129510:CDS
ACTATCTCTTTCTTTCGAAG+AGG 0.564189 7_3:+81459004 None:intergenic
ACCCTTGTTGCTGTAACAGT+AGG 0.565468 7_3:+81460037 None:intergenic
AAGTAACGTCACCGGTCTCA+AGG 0.566027 7_3:-81459123 Msa1129510:three_prime_UTR
TTTCATATTCAGACCAAACA+TGG 0.566044 7_3:+81462008 None:intergenic
GAAGGTGTTGAGGCTGCCCT+CGG 0.566261 7_3:-81459998 Msa1129510:CDS
ACTGAAACTCTCCGTTGGGA+GGG 0.566485 7_3:-81459084 Msa1129510:three_prime_UTR
AACTGAAACTCTCCGTTGGG+AGG 0.568769 7_3:-81459085 Msa1129510:three_prime_UTR
CATATCCCAGCCCTTCCAAA+GGG 0.571328 7_3:+81459633 None:intergenic
ATAGAGGCAGCAGTCATAAG+TGG 0.573140 7_3:-81459585 Msa1129510:CDS
TTTCTTCTGACCCCAAACCT+GGG 0.573694 7_3:+81459265 None:intergenic
CCAATATCATGCCCTTCCAG+TGG 0.575651 7_3:+81459294 None:intergenic
CCGCCGATGATGCCGACAAG+TGG 0.575746 7_3:+81461784 None:intergenic
GACCGGTGACGTTACTTCCA+GGG 0.575771 7_3:+81459129 None:intergenic
CGAGAATGGAAGGGTACTGT+AGG 0.576220 7_3:-81461550 Msa1129510:CDS
TGAACTTGCCAAGTAGGCTA+TGG 0.576629 7_3:-81459220 Msa1129510:exon
ACTGTAGGAGAGTTGAAGAA+TGG 0.576821 7_3:-81461535 Msa1129510:CDS
AGCTATATATCTTGGAGGAG+AGG 0.578667 7_3:+81461489 None:intergenic
CTTGTCGGCATCATCGGCGG+TGG 0.579771 7_3:-81461781 Msa1129510:CDS
GAGGAATTGATTCAGTGTCA+TGG 0.579924 7_3:-81460449 Msa1129510:CDS
ACAGTGAGGACCGTCACTCT+GGG 0.580951 7_3:+81460395 None:intergenic
TGTGGCACTTGAGTGAAAAT+GGG 0.582715 7_3:-81460949 Msa1129510:CDS
GTTAAATCATCCCTTGAGAC+CGG 0.584690 7_3:+81459112 None:intergenic
GCAGACTATATCCAAAGTCT+CGG 0.585256 7_3:-81459363 Msa1129510:CDS
AGTTCTCGTGTAGACTAGCT+TGG 0.585699 7_3:-81461023 Msa1129510:intron
TTCCTACTGTTACAGCAACA+AGG 0.590217 7_3:-81460039 Msa1129510:CDS
CATGAGTTTCAACCACTGGA+AGG 0.591971 7_3:-81459306 Msa1129510:CDS
GTAGACTAGCTTGGTGAATG+TGG 0.592576 7_3:-81461014 Msa1129510:intron
GATGCCGACAAGTGGTTCGT+CGG 0.594689 7_3:+81461792 None:intergenic
AATGAATCTTCTATTGGCAG+AGG 0.596861 7_3:+81459177 None:intergenic
AGTAACGTCACCGGTCTCAA+GGG 0.599948 7_3:-81459122 Msa1129510:three_prime_UTR
ATGAGTTTCAACCACTGGAA+GGG 0.600186 7_3:-81459305 Msa1129510:CDS
TCCCCTGGAAGTAACGTCAC+CGG 0.601313 7_3:-81459131 Msa1129510:three_prime_UTR
AGTGAAAATGGGAAACCTCG+TGG 0.603023 7_3:-81460938 Msa1129510:CDS
CATTTCATATCCATGCGCAA+TGG 0.603764 7_3:-81459158 Msa1129510:three_prime_UTR
ACATATCCCAGCCCTTCCAA+AGG 0.604486 7_3:+81459632 None:intergenic
GTATTCTCTAGAAAAGGAAG+AGG 0.605613 7_3:+81460501 None:intergenic
AATTGATTCAGTGTCATGGA+TGG 0.607121 7_3:-81460445 Msa1129510:CDS
CCACTTGTCGGCATCATCGG+CGG 0.608760 7_3:-81461784 Msa1129510:CDS
GTGAAAATGGGAAACCTCGT+GGG 0.611025 7_3:-81460937 Msa1129510:CDS
CCCCGCAGAAGATCCTCTTA+CGG 0.611097 7_3:-81461883 Msa1129510:CDS
CCAAGATATATAGCTACTCG+TGG 0.614560 7_3:-81461481 Msa1129510:CDS
AAAACAGAACAAGGTTCCAC+AGG 0.618596 7_3:-81460343 Msa1129510:intron
TTCCTCAACAGCCTTCGCCA+CGG 0.618978 7_3:-81461935 Msa1129510:CDS
CCAAAGGGATCAAAGATGCA+AGG 0.620527 7_3:+81459648 None:intergenic
GCTGCCCTCGGATTATCGAA+AGG 0.624060 7_3:-81459986 Msa1129510:CDS
GTTGATTAGGTATGGAGCTG+TGG 0.626792 7_3:+81461966 None:intergenic
TGAATGTGGAGAGACCGTGC+TGG 0.629635 7_3:-81461000 Msa1129510:CDS
ATTAGGTATGGAGCTGTGGA+GGG 0.631876 7_3:+81461970 None:intergenic
TAAGGCCCCTTCCCTCCCAA+CGG 0.634568 7_3:+81459073 None:intergenic
TCCTACTGTTACAGCAACAA+GGG 0.638142 7_3:-81460038 Msa1129510:CDS
TTGCTGGCTTCCCAGAGTGA+CGG 0.638724 7_3:-81460405 Msa1129510:CDS
CATTACATGAAGCTGTTGAG+GGG 0.639583 7_3:+81459048 None:intergenic
TGCTTATGGAAAACAGAACA+AGG 0.641251 7_3:-81460352 Msa1129510:CDS
AGGCATGCTAGAAGGTGTTG+AGG 0.643411 7_3:-81460008 Msa1129510:CDS
GCAACCCTTTCGATAATCCG+AGG 0.646112 7_3:+81459981 None:intergenic
TTGGACAATTCCCAGGTTTG+GGG 0.647470 7_3:-81459275 Msa1129510:CDS
TTCCGTAAGAGGATCTTCTG+CGG 0.652133 7_3:+81461881 None:intergenic
AACCCGATGTCATAAGCAAG+CGG 0.656989 7_3:+81460725 None:intergenic
ACAGCAACAAGGGTAAAGGA+AGG 0.657319 7_3:-81460028 Msa1129510:CDS
GCAATTGTTGTTGCACACAA+TGG 0.658808 7_3:-81460905 Msa1129510:intron
TCCAATTTACTGATCCAGCA+CGG 0.667315 7_3:+81460986 None:intergenic
CAACCCTTTCGATAATCCGA+GGG 0.671065 7_3:+81459982 None:intergenic
TTGGTCTGAATATGAAAACA+TGG 0.672279 7_3:-81462002 Msa1129510:CDS
GTAGGAGAGTTGAAGAATGG+TGG 0.676137 7_3:-81461532 Msa1129510:CDS
TGGTTCGTCGGAGAAAGGAG+CGG 0.684420 7_3:+81461804 None:intergenic
AGGCTGTTGAGGAAGATGGA+CGG 0.688186 7_3:+81461944 None:intergenic
CCGTAAGAGGATCTTCTGCG+GGG 0.688670 7_3:+81461883 None:intergenic
GGTTTGGTTCGAGAATGGAA+GGG 0.690767 7_3:-81461559 Msa1129510:CDS
GCTATCTTCTTAGACAAACG+CGG 0.704386 7_3:-81461739 Msa1129510:CDS
CTTAGAAAGGTCCAACAGTG+AGG 0.708141 7_3:+81460381 None:intergenic
AATACCAGTGTCGAAAACGG+TGG 0.722308 7_3:+81461708 None:intergenic
ATTGCATCAAATTTCCCACG+AGG 0.745409 7_3:+81460923 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATATTAATGAAAGTTG+AGG - chr7_3:81459831-81459850 Msa1129510:intron 15.0%
!! TAAATATTAATGAAAGTTGA+GGG - chr7_3:81459832-81459851 Msa1129510:intron 15.0%
!!! TAGTGACATTATTATATTTT+TGG - chr7_3:81462025-81462044 Msa1129510:exon 15.0%
!!! AGTGACATTATTATATTTTT+GGG - chr7_3:81462026-81462045 Msa1129510:exon 15.0%
!! TGTATTTGTAGTGTTAAATT+TGG + chr7_3:81459661-81459680 None:intergenic 20.0%
!!! CACTACAAATACAATTTTAA+AGG - chr7_3:81459668-81459687 Msa1129510:CDS 20.0%
!!! ATTGGCATTGTTTAATTTAA+GGG - chr7_3:81459802-81459821 Msa1129510:intron 20.0%
!! TCTTAACACAAAAATAACAT+GGG + chr7_3:81459963-81459982 None:intergenic 20.0%
!! TTCTTAACACAAAAATAACA+TGG + chr7_3:81459964-81459983 None:intergenic 20.0%
!! TACTGAAAAATGTGTAAAAA+CGG + chr7_3:81460183-81460202 None:intergenic 20.0%
!!! TTTTTACACATTTTTCAGTA+TGG - chr7_3:81460183-81460202 Msa1129510:intron 20.0%
!! TTCATTTGTTTAGCAATTAA+TGG + chr7_3:81460313-81460332 None:intergenic 20.0%
!! ATTAATTGCTAAACAAATGA+AGG - chr7_3:81460312-81460331 Msa1129510:intron 20.0%
!!! ATAAATTTTAATCAAATCCC+TGG + chr7_3:81460849-81460868 None:intergenic 20.0%
!! ATATGAAATGAATCTTCTAT+TGG + chr7_3:81461842-81461861 None:intergenic 20.0%
!! AAGACTTATTGATGATTCTT+TGG - chr7_3:81459351-81459370 Msa1129510:CDS 25.0%
! TTGCTGAAATTGTTAATGTT+TGG - chr7_3:81459419-81459438 Msa1129510:intron 25.0%
! TGAAATTGTTAATGTTTGGT+TGG - chr7_3:81459423-81459442 Msa1129510:intron 25.0%
!!! AGAGACGTTTTTCAATTTAA+GGG + chr7_3:81459621-81459640 None:intergenic 25.0%
! CAATATGTATAACCTTTCAT+AGG - chr7_3:81459730-81459749 Msa1129510:intron 25.0%
!!! TAACCTTTCATAGGTTTTAA+TGG - chr7_3:81459739-81459758 Msa1129510:intron 25.0%
!!! AACCTTTCATAGGTTTTAAT+GGG - chr7_3:81459740-81459759 Msa1129510:intron 25.0%
!! TGCTTATTAGAGAGATATTT+TGG - chr7_3:81459763-81459782 Msa1129510:intron 25.0%
!!! TTATTAGAGAGATATTTTGG+TGG - chr7_3:81459766-81459785 Msa1129510:intron 25.0%
!! GATTGGCATTGTTTAATTTA+AGG - chr7_3:81459801-81459820 Msa1129510:intron 25.0%
! ATACACAAATGAAAATGCAT+AGG + chr7_3:81460886-81460905 None:intergenic 25.0%
!! TTTTCCTGATAAACAAAACA+TGG + chr7_3:81460949-81460968 None:intergenic 25.0%
! GCATTGTAAGTAAACTTAAA+AGG - chr7_3:81461275-81461294 Msa1129510:intron 25.0%
!!! GTATTATTCTGAGATTTTCA+GGG - chr7_3:81461307-81461326 Msa1129510:intron 25.0%
!!! TATTATTCTGAGATTTTCAG+GGG - chr7_3:81461308-81461327 Msa1129510:intron 25.0%
! TAGACATGAATTACTACTAA+TGG + chr7_3:81461556-81461575 None:intergenic 25.0%
!! CACAATTTTGAACAACAAAA+GGG + chr7_3:81461605-81461624 None:intergenic 25.0%
!! ACACAATTTTGAACAACAAA+AGG + chr7_3:81461606-81461625 None:intergenic 25.0%
!! TTGTTGTTCAAAATTGTGTT+TGG - chr7_3:81461607-81461626 Msa1129510:CDS 25.0%
CAAACATGGTTTATGGTTTA+TGG + chr7_3:81458991-81459010 None:intergenic 30.0%
CATAAACCATAAACCATGTT+TGG - chr7_3:81458989-81459008 Msa1129510:three_prime_UTR 30.0%
TTTCATATTCAGACCAAACA+TGG + chr7_3:81459005-81459024 None:intergenic 30.0%
TTGGTCTGAATATGAAAACA+TGG - chr7_3:81459008-81459027 Msa1129510:three_prime_UTR 30.0%
TGTTAATGTTTGGTTGGATA+AGG - chr7_3:81459429-81459448 Msa1129510:intron 30.0%
GTTAATGTTTGGTTGGATAA+GGG - chr7_3:81459430-81459449 Msa1129510:intron 30.0%
!! GGACTAGATTGTTGATAATA+AGG + chr7_3:81459600-81459619 None:intergenic 30.0%
!! GAGAGACGTTTTTCAATTTA+AGG + chr7_3:81459622-81459641 None:intergenic 30.0%
ATTTGGAAAAATGACCCAAA+TGG + chr7_3:81459644-81459663 None:intergenic 30.0%
GAAAAACTTAACGATCATCT+TGG + chr7_3:81459890-81459909 None:intergenic 30.0%
! CTGCTATAGTTCTTAGATTT+TGG - chr7_3:81459921-81459940 Msa1129510:intron 30.0%
!!! AGATTTTGGTTTTTTTGCTG+TGG - chr7_3:81459935-81459954 Msa1129510:intron 30.0%
AGTAAATTGGAGCCATTTAA+TGG - chr7_3:81460036-81460055 Msa1129510:CDS 30.0%
GTAAATTGGAGCCATTTAAT+GGG - chr7_3:81460037-81460056 Msa1129510:CDS 30.0%
ATGTATAGTTATCCGACTTA+TGG - chr7_3:81460215-81460234 Msa1129510:intron 30.0%
GTTTATCGAATCAAATGAAC+TGG + chr7_3:81460359-81460378 None:intergenic 30.0%
AGTAGAATAGAAACAATAGG+TGG + chr7_3:81460428-81460447 None:intergenic 30.0%
GACAGTAGAATAGAAACAAT+AGG + chr7_3:81460431-81460450 None:intergenic 30.0%
! ACTTCTGTATTCTCTAGAAA+AGG + chr7_3:81460518-81460537 None:intergenic 30.0%
! AATACAGAAGTTCCTTTTGA+AGG - chr7_3:81460527-81460546 Msa1129510:CDS 30.0%
CAGCAATTTCTTGGTATTAT+TGG + chr7_3:81460591-81460610 None:intergenic 30.0%
CAATAATACCAAGAAATTGC+TGG - chr7_3:81460589-81460608 Msa1129510:intron 30.0%
GGTATAGAGGAGTAATATAT+TGG - chr7_3:81460786-81460805 Msa1129510:intron 30.0%
GGCAAATATTATTCTAGGTA+AGG + chr7_3:81460828-81460847 None:intergenic 30.0%
TACCTAGAATAATATTTGCC+AGG - chr7_3:81460828-81460847 Msa1129510:intron 30.0%
ACCTAGAATAATATTTGCCA+GGG - chr7_3:81460829-81460848 Msa1129510:intron 30.0%
AGCTTCGTATAAAAAGGTTT+AGG + chr7_3:81461057-81461076 None:intergenic 30.0%
!!! CGTATTATTCTGAGATTTTC+AGG - chr7_3:81461306-81461325 Msa1129510:intron 30.0%
AACAAACCACGTAAATTAGA+AGG + chr7_3:81461490-81461509 None:intergenic 30.0%
TTCAGACCAAACATGGTTTA+TGG + chr7_3:81458998-81459017 None:intergenic 35.0%
!! AGTGACTTGTTCTTGTTTGA+AGG + chr7_3:81459182-81459201 None:intergenic 35.0%
! ATGAATACCAGTGTCGAAAA+CGG + chr7_3:81459308-81459327 None:intergenic 35.0%
TTGAAAAACGTCTCTCCATT+TGG - chr7_3:81459626-81459645 Msa1129510:CDS 35.0%
TGAAAAACGTCTCTCCATTT+GGG - chr7_3:81459627-81459646 Msa1129510:CDS 35.0%
CACCCATTAAAACCTATGAA+AGG + chr7_3:81459745-81459764 None:intergenic 35.0%
ACTCGACCTTTACAATTTGA+AGG - chr7_3:81459863-81459882 Msa1129510:intron 35.0%
CTTGGTCCTTCAAATTGTAA+AGG + chr7_3:81459872-81459891 None:intergenic 35.0%
TGTGTAAAAACGGAACTTGT+AGG + chr7_3:81460173-81460192 None:intergenic 35.0%
TTACTCAAGAAGCCATAAGT+CGG + chr7_3:81460230-81460249 None:intergenic 35.0%
AAACAAATGAAGGTCAGTGT+AGG - chr7_3:81460322-81460341 Msa1129510:intron 35.0%
CGAATCAAATGAACTGGAAA+GGG + chr7_3:81460353-81460372 None:intergenic 35.0%
TCGAATCAAATGAACTGGAA+AGG + chr7_3:81460354-81460373 None:intergenic 35.0%
GCTGGAATTGAGTTCAATAT+GGG - chr7_3:81460463-81460482 Msa1129510:CDS 35.0%
! GTATTCTCTAGAAAAGGAAG+AGG + chr7_3:81460512-81460531 None:intergenic 35.0%
! AATTGATTCAGTGTCATGGA+TGG - chr7_3:81460565-81460584 Msa1129510:intron 35.0%
ATAAGCAGCAGTACTTAGAA+AGG + chr7_3:81460645-81460664 None:intergenic 35.0%
! TTTCTAAGTACTGCTGCTTA+TGG - chr7_3:81460644-81460663 Msa1129510:intron 35.0%
TGCTTATGGAAAACAGAACA+AGG - chr7_3:81460658-81460677 Msa1129510:intron 35.0%
AAAATTTCACCACTTACCTG+TGG + chr7_3:81460686-81460705 None:intergenic 35.0%
TAGTTTCCTGAGTGTTAGAT+TGG - chr7_3:81460736-81460755 Msa1129510:CDS 35.0%
!!! CTGAGTGTTAGATTGGTTTT+GGG - chr7_3:81460743-81460762 Msa1129510:intron 35.0%
!!! TGAGTGTTAGATTGGTTTTG+GGG - chr7_3:81460744-81460763 Msa1129510:intron 35.0%
!! GATGTTTTTCGAAGGTATAG+AGG - chr7_3:81460773-81460792 Msa1129510:intron 35.0%
TCCCTGGCAAATATTATTCT+AGG + chr7_3:81460833-81460852 None:intergenic 35.0%
!!! TGAGCCATGTTTTGTTTATC+AGG - chr7_3:81460942-81460961 Msa1129510:CDS 35.0%
AGTTGGAGCTTCGTATAAAA+AGG + chr7_3:81461063-81461082 None:intergenic 35.0%
TTTATACGAAGCTCCAACTA+TGG - chr7_3:81461064-81461083 Msa1129510:intron 35.0%
ACTTTGACTCTTACCATAGT+TGG + chr7_3:81461080-81461099 None:intergenic 35.0%
TTGAACAAAAACATGTCAGG+AGG + chr7_3:81461136-81461155 None:intergenic 35.0%
!! TCCTGACATGTTTTTGTTCA+AGG - chr7_3:81461135-81461154 Msa1129510:intron 35.0%
ACCTTGAACAAAAACATGTC+AGG + chr7_3:81461139-81461158 None:intergenic 35.0%
CCAATTGAAAGTGACATACA+TGG + chr7_3:81461466-81461485 None:intergenic 35.0%
!! CCATGTATGTCACTTTCAAT+TGG - chr7_3:81461463-81461482 Msa1129510:CDS 35.0%
ATTGGACCTTCTAATTTACG+TGG - chr7_3:81461481-81461500 Msa1129510:CDS 35.0%
CTTGGCAAGTTCATATACTT+GGG + chr7_3:81461783-81461802 None:intergenic 35.0%
ACTTGGCAAGTTCATATACT+TGG + chr7_3:81461784-81461803 None:intergenic 35.0%
AGTATATGAACTTGCCAAGT+AGG - chr7_3:81461784-81461803 Msa1129510:CDS 35.0%
AATGAATCTTCTATTGGCAG+AGG + chr7_3:81461836-81461855 None:intergenic 35.0%
TCATTACATGAAGCTGTTGA+GGG + chr7_3:81461966-81461985 None:intergenic 35.0%
ACTATCTCTTTCTTTCGAAG+AGG + chr7_3:81462009-81462028 None:intergenic 35.0%
! TGGTTTTTCCATTTTCACCG+TGG + chr7_3:81459095-81459114 None:intergenic 40.0%
TTTACGAGAAGTTCCGTAAG+AGG + chr7_3:81459143-81459162 None:intergenic 40.0%
GCTATCTTCTTAGACAAACG+CGG - chr7_3:81459271-81459290 Msa1129510:CDS 40.0%
! GTTTTCGACACTGGTATTCA+TGG - chr7_3:81459307-81459326 Msa1129510:CDS 40.0%
CAGTAAAAAACTGAGCAGCA+TGG + chr7_3:81459384-81459403 None:intergenic 40.0%
TGTTTGGTTGGATAAGGGTT+TGG - chr7_3:81459435-81459454 Msa1129510:intron 40.0%
! ATAAGGGTTTGGTTCGAGAA+TGG - chr7_3:81459446-81459465 Msa1129510:intron 40.0%
ACTGTAGGAGAGTTGAAGAA+TGG - chr7_3:81459475-81459494 Msa1129510:intron 40.0%
GCTATATATCTTGGAGGAGA+GGG + chr7_3:81459523-81459542 None:intergenic 40.0%
AGCTATATATCTTGGAGGAG+AGG + chr7_3:81459524-81459543 None:intergenic 40.0%
CGAGTAGCTATATATCTTGG+AGG + chr7_3:81459529-81459548 None:intergenic 40.0%
CCACGAGTAGCTATATATCT+TGG + chr7_3:81459532-81459551 None:intergenic 40.0%
CCAAGATATATAGCTACTCG+TGG - chr7_3:81459529-81459548 Msa1129510:intron 40.0%
!! ATTCCTTACTCTCTGAGGTT+AGG - chr7_3:81459569-81459588 Msa1129510:CDS 40.0%
GGTGGAGAGACTAAATTGAT+TGG - chr7_3:81459784-81459803 Msa1129510:intron 40.0%
TCCAATTTACTGATCCAGCA+CGG + chr7_3:81460027-81460046 None:intergenic 40.0%
AAGTGCCACATCCCATTAAA+TGG + chr7_3:81460051-81460070 None:intergenic 40.0%
ATGTGGCACTTGAGTGAAAA+TGG - chr7_3:81460060-81460079 Msa1129510:intron 40.0%
TGTGGCACTTGAGTGAAAAT+GGG - chr7_3:81460061-81460080 Msa1129510:intron 40.0%
ATTGCATCAAATTTCCCACG+AGG + chr7_3:81460090-81460109 None:intergenic 40.0%
! GCAATTGTTGTTGCACACAA+TGG - chr7_3:81460105-81460124 Msa1129510:intron 40.0%
! CTATTTCTCTATTTGCCGAC+AGG - chr7_3:81460250-81460269 Msa1129510:intron 40.0%
TAACCGCTTGCTTATGACAT+CGG - chr7_3:81460282-81460301 Msa1129510:intron 40.0%
TTCTACTGTCCATTGTTCAG+AGG - chr7_3:81460441-81460460 Msa1129510:CDS 40.0%
GGCTGGAATTGAGTTCAATA+TGG - chr7_3:81460462-81460481 Msa1129510:CDS 40.0%
TTCCTCAAACGCTGCTAAAA+GGG + chr7_3:81460489-81460508 None:intergenic 40.0%
CTCACAAAAGCTCCTTCAAA+AGG + chr7_3:81460542-81460561 None:intergenic 40.0%
! TTTGAAGGAGCTTTTGTGAG+AGG - chr7_3:81460542-81460561 Msa1129510:CDS 40.0%
! GAGGAATTGATTCAGTGTCA+TGG - chr7_3:81460561-81460580 Msa1129510:intron 40.0%
AAAACAGAACAAGGTTCCAC+AGG - chr7_3:81460667-81460686 Msa1129510:intron 40.0%
CCAAAACCAATCTAACACTC+AGG + chr7_3:81460745-81460764 None:intergenic 40.0%
!!! CCTGAGTGTTAGATTGGTTT+TGG - chr7_3:81460742-81460761 Msa1129510:intron 40.0%
TTCCTACTGTTACAGCAACA+AGG - chr7_3:81460971-81460990 Msa1129510:CDS 40.0%
TCCTACTGTTACAGCAACAA+GGG - chr7_3:81460972-81460991 Msa1129510:CDS 40.0%
TGTTACAGCAACAAGGGTAA+AGG - chr7_3:81460978-81460997 Msa1129510:CDS 40.0%
TCAAAGATGCAAGGAACTTC+AGG + chr7_3:81461356-81461375 None:intergenic 40.0%
! CATCTTTGATCCCTTTGGAA+GGG - chr7_3:81461367-81461386 Msa1129510:intron 40.0%
! GCTGCTAGGTTCTAATATAG+AGG - chr7_3:81461409-81461428 Msa1129510:intron 40.0%
GCAGACTATATCCAAAGTCT+CGG - chr7_3:81461647-81461666 Msa1129510:CDS 40.0%
AACCAACAGCAAACTCTTCA+GGG + chr7_3:81461679-81461698 None:intergenic 40.0%
AAACCAACAGCAAACTCTTC+AGG + chr7_3:81461680-81461699 None:intergenic 40.0%
GAATCATGAGTTTCAACCAC+TGG - chr7_3:81461700-81461719 Msa1129510:CDS 40.0%
ATGAGTTTCAACCACTGGAA+GGG - chr7_3:81461705-81461724 Msa1129510:CDS 40.0%
CATGATATTGGACAATTCCC+AGG - chr7_3:81461728-81461747 Msa1129510:CDS 40.0%
TATTGGACAATTCCCAGGTT+TGG - chr7_3:81461733-81461752 Msa1129510:CDS 40.0%
ATTGGACAATTCCCAGGTTT+GGG - chr7_3:81461734-81461753 Msa1129510:CDS 40.0%
CATTTCATATCCATGCGCAA+TGG - chr7_3:81461852-81461871 Msa1129510:CDS 40.0%
GTTAAATCATCCCTTGAGAC+CGG + chr7_3:81461901-81461920 None:intergenic 40.0%
TTGAAACTGAAACTCTCCGT+TGG - chr7_3:81461921-81461940 Msa1129510:CDS 40.0%
TGAAACTGAAACTCTCCGTT+GGG - chr7_3:81461922-81461941 Msa1129510:CDS 40.0%
CATTACATGAAGCTGTTGAG+GGG + chr7_3:81461965-81461984 None:intergenic 40.0%
GTCATTACATGAAGCTGTTG+AGG + chr7_3:81461967-81461986 None:intergenic 40.0%
ATTAGGTATGGAGCTGTGGA+GGG + chr7_3:81459043-81459062 None:intergenic 45.0%
GTTGATTAGGTATGGAGCTG+TGG + chr7_3:81459047-81459066 None:intergenic 45.0%
GATGGACGGTTGATTAGGTA+TGG + chr7_3:81459055-81459074 None:intergenic 45.0%
AGGAAGATGGACGGTTGATT+AGG + chr7_3:81459060-81459079 None:intergenic 45.0%
TTCCGTAAGAGGATCTTCTG+CGG + chr7_3:81459132-81459151 None:intergenic 45.0%
GAAGATAGCGCAAATGAGAC+CGG + chr7_3:81459260-81459279 None:intergenic 45.0%
! AATACCAGTGTCGAAAACGG+TGG + chr7_3:81459305-81459324 None:intergenic 45.0%
GACACTGGTATTCATGGTCT+TGG - chr7_3:81459313-81459332 Msa1129510:CDS 45.0%
! ACTGGTATTCATGGTCTTGG+AGG - chr7_3:81459316-81459335 Msa1129510:CDS 45.0%
! TCATGGTCTTGGAGGAAGAT+TGG - chr7_3:81459324-81459343 Msa1129510:CDS 45.0%
! CATGGTCTTGGAGGAAGATT+GGG - chr7_3:81459325-81459344 Msa1129510:CDS 45.0%
! GGTTTGGTTCGAGAATGGAA+GGG - chr7_3:81459451-81459470 Msa1129510:intron 45.0%
GTAGGAGAGTTGAAGAATGG+TGG - chr7_3:81459478-81459497 Msa1129510:intron 45.0%
CTTGGAGGAGAGGGTAAAAA+TGG + chr7_3:81459514-81459533 None:intergenic 45.0%
!! TGCTGATTCCTTACTCTCTG+AGG - chr7_3:81459564-81459583 Msa1129510:intron 45.0%
CAACCTAACCTCAGAGAGTA+AGG + chr7_3:81459575-81459594 None:intergenic 45.0%
! AGTTCTCGTGTAGACTAGCT+TGG - chr7_3:81459987-81460006 Msa1129510:CDS 45.0%
!! GTAGACTAGCTTGGTGAATG+TGG - chr7_3:81459996-81460015 Msa1129510:CDS 45.0%
ACCGTGCTGGATCAGTAAAT+TGG - chr7_3:81460023-81460042 Msa1129510:CDS 45.0%
TGGAGCCATTTAATGGGATG+TGG - chr7_3:81460043-81460062 Msa1129510:CDS 45.0%
AGTGAAAATGGGAAACCTCG+TGG - chr7_3:81460072-81460091 Msa1129510:intron 45.0%
GTGAAAATGGGAAACCTCGT+GGG - chr7_3:81460073-81460092 Msa1129510:intron 45.0%
! CGGTTAGCACATTTTCCTGT+CGG + chr7_3:81460268-81460287 None:intergenic 45.0%
AACCGCTTGCTTATGACATC+GGG - chr7_3:81460283-81460302 Msa1129510:intron 45.0%
AACCCGATGTCATAAGCAAG+CGG + chr7_3:81460288-81460307 None:intergenic 45.0%
CAATTCCAGCCTCTGAACAA+TGG + chr7_3:81460453-81460472 None:intergenic 45.0%
GTTCCTCAAACGCTGCTAAA+AGG + chr7_3:81460490-81460509 None:intergenic 45.0%
CTTAGAAAGGTCCAACAGTG+AGG + chr7_3:81460632-81460651 None:intergenic 45.0%
AACAAGGTTCCACAGGTAAG+TGG - chr7_3:81460674-81460693 Msa1129510:intron 45.0%
!!! TAGATTGGTTTTGGGGTTGC+TGG - chr7_3:81460751-81460770 Msa1129510:intron 45.0%
!! GGTTGCTGGATGTTTTTCGA+AGG - chr7_3:81460765-81460784 Msa1129510:intron 45.0%
ACCCTTGTTGCTGTAACAGT+AGG + chr7_3:81460976-81460995 None:intergenic 45.0%
ACAGCAACAAGGGTAAAGGA+AGG - chr7_3:81460982-81461001 Msa1129510:CDS 45.0%
! GTAAAGGAAGGCATGCTAGA+AGG - chr7_3:81460994-81461013 Msa1129510:CDS 45.0%
CAACCCTTTCGATAATCCGA+GGG + chr7_3:81461031-81461050 None:intergenic 45.0%
GGAACTTCAGGTGTGTTAGT+TGG + chr7_3:81461344-81461363 None:intergenic 45.0%
CCAAAGGGATCAAAGATGCA+AGG + chr7_3:81461365-81461384 None:intergenic 45.0%
CCTTGCATCTTTGATCCCTT+TGG - chr7_3:81461362-81461381 Msa1129510:intron 45.0%
GCATCTTTGATCCCTTTGGA+AGG - chr7_3:81461366-81461385 Msa1129510:intron 45.0%
! ATATGTGGTGATTGGCTGCT+AGG - chr7_3:81461395-81461414 Msa1129510:intron 45.0%
ATAGAGGCAGCAGTCATAAG+TGG - chr7_3:81461425-81461444 Msa1129510:intron 45.0%
CATGAGTTTCAACCACTGGA+AGG - chr7_3:81461704-81461723 Msa1129510:CDS 45.0%
TTGGACAATTCCCAGGTTTG+GGG - chr7_3:81461735-81461754 Msa1129510:CDS 45.0%
TTTCTTCTGACCCCAAACCT+GGG + chr7_3:81461748-81461767 None:intergenic 45.0%
! TTTTCTTCTGACCCCAAACC+TGG + chr7_3:81461749-81461768 None:intergenic 45.0%
TGAACTTGCCAAGTAGGCTA+TGG - chr7_3:81461790-81461809 Msa1129510:CDS 45.0%
TATGAGCACCATAGCCTACT+TGG + chr7_3:81461801-81461820 None:intergenic 45.0%
! TGAAGCTGTTGAGGGGTATA+AGG + chr7_3:81461958-81461977 None:intergenic 45.0%
!! ATATTAAAAAAAAATATTTG+TGG + chr7_3:81461515-81461534 None:intergenic 5.0%
!!! TTTTTTTTTAATATAGTAAT+TGG - chr7_3:81461521-81461540 Msa1129510:CDS 5.0%
GATTAGGTATGGAGCTGTGG+AGG + chr7_3:81459044-81459063 None:intergenic 50.0%
AGGCTGTTGAGGAAGATGGA+CGG + chr7_3:81459069-81459088 None:intergenic 50.0%
! TTCCATTTTCACCGTGGCGA+AGG + chr7_3:81459089-81459108 None:intergenic 50.0%
TCCGTAAGAGGATCTTCTGC+GGG + chr7_3:81459131-81459150 None:intergenic 50.0%
ACAAGTGGTTCGTCGGAGAA+AGG + chr7_3:81459214-81459233 None:intergenic 50.0%
TTCTCCGACGAACCACTTGT+CGG - chr7_3:81459214-81459233 Msa1129510:exon 50.0%
GAACCACTTGTCGGCATCAT+CGG - chr7_3:81459223-81459242 Msa1129510:exon 50.0%
! GGGTTTGGTTCGAGAATGGA+AGG - chr7_3:81459450-81459469 Msa1129510:intron 50.0%
!! CGAGAATGGAAGGGTACTGT+AGG - chr7_3:81459460-81459479 Msa1129510:intron 50.0%
ACTGTCCATTGTTCAGAGGC+TGG - chr7_3:81460445-81460464 Msa1129510:CDS 50.0%
CTGGGAAGCCAGCAATTTCT+TGG + chr7_3:81460600-81460619 None:intergenic 50.0%
!! AGGCATGCTAGAAGGTGTTG+AGG - chr7_3:81461002-81461021 Msa1129510:CDS 50.0%
CTGCCCTCGGATTATCGAAA+GGG - chr7_3:81461025-81461044 Msa1129510:intron 50.0%
GCAACCCTTTCGATAATCCG+AGG + chr7_3:81461032-81461051 None:intergenic 50.0%
! TTTGATCCCTTTGGAAGGGC+TGG - chr7_3:81461371-81461390 Msa1129510:intron 50.0%
! TTGATCCCTTTGGAAGGGCT+GGG - chr7_3:81461372-81461391 Msa1129510:intron 50.0%
CATATCCCAGCCCTTCCAAA+GGG + chr7_3:81461380-81461399 None:intergenic 50.0%
ACATATCCCAGCCCTTCCAA+AGG + chr7_3:81461381-81461400 None:intergenic 50.0%
TTTGGAAGGGCTGGGATATG+TGG - chr7_3:81461380-81461399 Msa1129510:intron 50.0%
!! GACCCTGAAGAGTTTGCTGT+TGG - chr7_3:81461674-81461693 Msa1129510:CDS 50.0%
CCAATATCATGCCCTTCCAG+TGG + chr7_3:81461719-81461738 None:intergenic 50.0%
! CCACTGGAAGGGCATGATAT+TGG - chr7_3:81461716-81461735 Msa1129510:CDS 50.0%
GGCTATGGTGCTCATAAAGC+AGG - chr7_3:81461805-81461824 Msa1129510:CDS 50.0%
AGGGGAATTTCCATTGCGCA+TGG + chr7_3:81461865-81461884 None:intergenic 50.0%
ATGCGCAATGGAAATTCCCC+TGG - chr7_3:81461864-81461883 Msa1129510:CDS 50.0%
AAGTAACGTCACCGGTCTCA+AGG - chr7_3:81461887-81461906 Msa1129510:CDS 50.0%
AGTAACGTCACCGGTCTCAA+GGG - chr7_3:81461888-81461907 Msa1129510:CDS 50.0%
AACTGAAACTCTCCGTTGGG+AGG - chr7_3:81461925-81461944 Msa1129510:CDS 50.0%
ACTGAAACTCTCCGTTGGGA+GGG - chr7_3:81461926-81461945 Msa1129510:CDS 50.0%
GCGAAGGCTGTTGAGGAAGA+TGG + chr7_3:81459073-81459092 None:intergenic 55.0%
TTCCTCAACAGCCTTCGCCA+CGG - chr7_3:81459075-81459094 Msa1129510:three_prime_UTR 55.0%
AGCCTTCGCCACGGTGAAAA+TGG - chr7_3:81459084-81459103 Msa1129510:three_prime_UTR 55.0%
AGAGGATCTTCTGCGGGGTT+TGG + chr7_3:81459125-81459144 None:intergenic 55.0%
CCGTAAGAGGATCTTCTGCG+GGG + chr7_3:81459130-81459149 None:intergenic 55.0%
CCCCGCAGAAGATCCTCTTA+CGG - chr7_3:81459127-81459146 Msa1129510:three_prime_UTR 55.0%
TGGTTCGTCGGAGAAAGGAG+CGG + chr7_3:81459209-81459228 None:intergenic 55.0%
GATGCCGACAAGTGGTTCGT+CGG + chr7_3:81459221-81459240 None:intergenic 55.0%
ATCATCGGCGGTGGTATCTC+CGG - chr7_3:81459238-81459257 Msa1129510:CDS 55.0%
TGAATGTGGAGAGACCGTGC+TGG - chr7_3:81460010-81460029 Msa1129510:CDS 55.0%
! GGCCCTTTTAGCAGCGTTTG+AGG - chr7_3:81460484-81460503 Msa1129510:CDS 55.0%
!! TTGCTGGCTTCCCAGAGTGA+CGG - chr7_3:81460605-81460624 Msa1129510:intron 55.0%
ACAGTGAGGACCGTCACTCT+GGG + chr7_3:81460618-81460637 None:intergenic 55.0%
AACAGTGAGGACCGTCACTC+TGG + chr7_3:81460619-81460638 None:intergenic 55.0%
AGAGTGACGGTCCTCACTGT+TGG - chr7_3:81460618-81460637 Msa1129510:intron 55.0%
GCTGCCCTCGGATTATCGAA+AGG - chr7_3:81461024-81461043 Msa1129510:intron 55.0%
GGGCTGGGATATGTGGTGAT+TGG - chr7_3:81461387-81461406 Msa1129510:intron 55.0%
CAGGGTCAGTTCCGAGACTT+TGG + chr7_3:81461661-81461680 None:intergenic 55.0%
TCCCCTGGAAGTAACGTCAC+CGG - chr7_3:81461879-81461898 Msa1129510:CDS 55.0%
ACCGGTGACGTTACTTCCAG+GGG + chr7_3:81461883-81461902 None:intergenic 55.0%
GACCGGTGACGTTACTTCCA+GGG + chr7_3:81461884-81461903 None:intergenic 55.0%
AGACCGGTGACGTTACTTCC+AGG + chr7_3:81461885-81461904 None:intergenic 55.0%
AAACTCTCCGTTGGGAGGGA+AGG - chr7_3:81461930-81461949 Msa1129510:CDS 55.0%
AACTCTCCGTTGGGAGGGAA+GGG - chr7_3:81461931-81461950 Msa1129510:CDS 55.0%
CTTCTGCGGGGTTTGGAGGA+TGG + chr7_3:81459118-81459137 None:intergenic 60.0%
GGATCTTCTGCGGGGTTTGG+AGG + chr7_3:81459122-81459141 None:intergenic 60.0%
CCACTTGTCGGCATCATCGG+CGG - chr7_3:81459226-81459245 Msa1129510:exon 60.0%
! CGCTCCACCGTTTTCGACAC+TGG - chr7_3:81459298-81459317 Msa1129510:CDS 60.0%
!! GAAGGTGTTGAGGCTGCCCT+CGG - chr7_3:81461012-81461031 Msa1129510:CDS 60.0%
ACTCTCCGTTGGGAGGGAAG+GGG - chr7_3:81461932-81461951 Msa1129510:CDS 60.0%
TAAGGCCCCTTCCCTCCCAA+CGG + chr7_3:81461940-81461959 None:intergenic 60.0%
CACCGTGGCGAAGGCTGTTG+AGG + chr7_3:81459080-81459099 None:intergenic 65.0%
CTGCGGGGTTTGGAGGATGG+TGG + chr7_3:81459115-81459134 None:intergenic 65.0%
CCGCCGATGATGCCGACAAG+TGG + chr7_3:81459229-81459248 None:intergenic 65.0%
CTTGTCGGCATCATCGGCGG+TGG - chr7_3:81459229-81459248 Msa1129510:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 81458942 81462090 81458942 ID=Msa1129510;Name=Msa1129510
chr7_3 mRNA 81458942 81462090 81458942 ID=Msa1129510-mRNA-1;Parent=Msa1129510;Name=Msa1129510-mRNA-1;_AED=0.28;_eAED=0.28;_QI=62|1|1|1|1|1|7|285|473
chr7_3 exon 81458942 81459388 81458942 ID=Msa1129510-mRNA-1:exon:23700;Parent=Msa1129510-mRNA-1
chr7_3 exon 81459566 81459704 81459566 ID=Msa1129510-mRNA-1:exon:23699;Parent=Msa1129510-mRNA-1
chr7_3 exon 81459947 81460068 81459947 ID=Msa1129510-mRNA-1:exon:23698;Parent=Msa1129510-mRNA-1
chr7_3 exon 81460344 81460571 81460344 ID=Msa1129510-mRNA-1:exon:23697;Parent=Msa1129510-mRNA-1
chr7_3 exon 81460699 81460760 81460699 ID=Msa1129510-mRNA-1:exon:23696;Parent=Msa1129510-mRNA-1
chr7_3 exon 81460906 81461032 81460906 ID=Msa1129510-mRNA-1:exon:23695;Parent=Msa1129510-mRNA-1
chr7_3 exon 81461447 81462090 81461447 ID=Msa1129510-mRNA-1:exon:23694;Parent=Msa1129510-mRNA-1
chr7_3 five_prime_UTR 81462029 81462090 81462029 ID=Msa1129510-mRNA-1:five_prime_utr;Parent=Msa1129510-mRNA-1
chr7_3 CDS 81461447 81462028 81461447 ID=Msa1129510-mRNA-1:cds;Parent=Msa1129510-mRNA-1
chr7_3 CDS 81460906 81461032 81460906 ID=Msa1129510-mRNA-1:cds;Parent=Msa1129510-mRNA-1
chr7_3 CDS 81460699 81460760 81460699 ID=Msa1129510-mRNA-1:cds;Parent=Msa1129510-mRNA-1
chr7_3 CDS 81460344 81460571 81460344 ID=Msa1129510-mRNA-1:cds;Parent=Msa1129510-mRNA-1
chr7_3 CDS 81459947 81460068 81459947 ID=Msa1129510-mRNA-1:cds;Parent=Msa1129510-mRNA-1
chr7_3 CDS 81459566 81459704 81459566 ID=Msa1129510-mRNA-1:cds;Parent=Msa1129510-mRNA-1
chr7_3 CDS 81459227 81459388 81459227 ID=Msa1129510-mRNA-1:cds;Parent=Msa1129510-mRNA-1
chr7_3 three_prime_UTR 81458942 81459226 81458942 ID=Msa1129510-mRNA-1:three_prime_utr;Parent=Msa1129510-mRNA-1
Gene Sequence

>Msa1129510

ATGTTTGGTCTGAATATGAAAACATGGAAATTGTTACCCTCCACAGCTCCATACCTAATCAACCGTCCATCTTCCTCAACAGCCTTCGCCACGGTGAAAATGGAAAAACCACCATCCTCCAAACCCCGCAGAAGATCCTCTTACGGAACTTCTCGTAAATCAATTCTCAACAAAACCTTCAAACAAGAACAAGTCACTTTCACCGCTCCTTTCTCCGACGAACCACTTGTCGGCATCATCGGCGGTGGTATCTCCGGTCTCATTTGCGCTATCTTCTTAGACAAACGCGGCATTCGCTCCACCGTTTTCGACACTGGTATTCATGGTCTTGGAGGAAGATTGGGAACAAGACTTATTGATGATTCTTTGGTTTTTGACCATGCTGCTCAGTTTTTTACTGTCAATGATTCTCGTTTTGCTGAAATTGTTAATGTTTGGTTGGATAAGGGTTTGGTTCGAGAATGGAAGGGTACTGTAGGAGAGTTGAAGAATGGTGGTGAATTTCTTCCATTTTTACCCTCTCCTCCAAGATATATAGCTACTCGTGGAATGCGCTTTCTTGCTGATTCCTTACTCTCTGAGACTAGCTTGGTGAATGTGGAGAGACCGTGCTGGATCAGTAAATTGGAGCCATTTAATGGGATGTGGCACTTGAGTGAAAATGGGAAACCTCGTGGGAAATTTGATGCAATTGTTGTTGCACACAATGGAAAATGTGCTAACCGCTTGCTTATGACATCGGGTTTGCCATTAATTGCTAAACAAATGAAGAGGCTGGAATTGAGTTCAATATGGGCCCTTTTAGCAGCGTTTGAGGAACCTCTTCCTTTTCTAGAGAATACAGAAGTTCCTTTTGAAGGAGCTTTTGTGAGAGGAATTGATTCAGTGTCATGGATGGCCAATAATACCAAGAAATTGCTGGCTTCCCAGAGTGACGGTCCTCACTGTTGGACCTTTCTAAGTACTGCTGCTTATGGAAAACAGAACAAGGTTCCACAGGAAAATATTCCTACTGTTACAGCAACAAGGGTAAAGGAAGGCATGCTAGAAGGTGTTGAGGCTGCCCTCGGATTATCGAAAGGGTTGCTTCCTAAACCTTTTTATACGAAGCTCCAACTATGGGGTGCAGCTCTTCCAACTAACACACCTGAAGTTCCTTGCATCTTTGATCCCTTTGGAAGGGCTGGGATATGTGGTGATTGGCTGCTAGGTTCTAATATAGAGGCAGCAGTCATAAGTGGAATTGCTCTAGCTAACCATATTGCAGACTATATCCAAAGTCTCGGAACTGACCCTGAAGAGTTTGCTGTTGGTTTGAATCATGAGTTTCAACCACTGGAAGGGCATGATATTGGACAATTCCCAGGTTTGGGGTCAGAAGAAAAGATGACTGAAGCCCAAGTATATGAACTTGCCAAGTAG

Protein sequence

>Msa1129510

MFGLNMKTWKLLPSTAPYLINRPSSSTAFATVKMEKPPSSKPRRRSSYGTSRKSILNKTFKQEQVTFTAPFSDEPLVGIIGGGISGLICAIFLDKRGIRSTVFDTGIHGLGGRLGTRLIDDSLVFDHAAQFFTVNDSRFAEIVNVWLDKGLVREWKGTVGELKNGGEFLPFLPSPPRYIATRGMRFLADSLLSETSLVNVERPCWISKLEPFNGMWHLSENGKPRGKFDAIVVAHNGKCANRLLMTSGLPLIAKQMKRLELSSIWALLAAFEEPLPFLENTEVPFEGAFVRGIDSVSWMANNTKKLLASQSDGPHCWTFLSTAAYGKQNKVPQENIPTVTATRVKEGMLEGVEAALGLSKGLLPKPFYTKLQLWGAALPTNTPEVPCIFDPFGRAGICGDWLLGSNIEAAVISGIALANHIADYIQSLGTDPEEFAVGLNHEFQPLEGHDIGQFPGLGSEEKMTEAQVYELAK*