Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159560 | XP_013443615.1 | 95.285 | 403 | 12 | 3 | 1 | 400 | 1 | 399 | 0.0 | 753 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159560 | sp|Q9M2A1|PP263_ARATH | 57.658 | 333 | 140 | 1 | 68 | 400 | 84 | 415 | 5.30e-143 | 416 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159560 | A0A072TVU0 | 95.285 | 403 | 12 | 3 | 1 | 400 | 1 | 399 | 0.0 | 753 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa0159560 | 0.841862 | 3.672951e-58 | -8.615850e-47 |
| Msa0017120 | Msa0159560 | 0.806859 | 6.704751e-50 | -8.615850e-47 |
| Msa0027540 | Msa0159560 | 0.802695 | 4.965240e-49 | -8.615850e-47 |
| Msa0029620 | Msa0159560 | 0.816659 | 4.933416e-52 | -8.615850e-47 |
| Msa0030000 | Msa0159560 | 0.819980 | 8.733322e-53 | -8.615850e-47 |
| Msa0084680 | Msa0159560 | 0.809643 | 1.710057e-50 | -8.615850e-47 |
| Msa0089210 | Msa0159560 | 0.803454 | 3.459215e-49 | -8.615850e-47 |
| Msa0094420 | Msa0159560 | 0.801862 | 7.369655e-49 | -8.615850e-47 |
| Msa0113160 | Msa0159560 | 0.849847 | 2.486458e-60 | -8.615850e-47 |
| Msa0114250 | Msa0159560 | 0.801278 | 9.709295e-49 | -8.615850e-47 |
| Msa0120330 | Msa0159560 | 0.803326 | 3.677107e-49 | -8.615850e-47 |
| Msa0125230 | Msa0159560 | 0.823618 | 1.256835e-53 | -8.615850e-47 |
| Msa0141830 | Msa0159560 | 0.805811 | 1.114903e-49 | -8.615850e-47 |
| Msa0145950 | Msa0159560 | 0.811432 | 7.021155e-51 | -8.615850e-47 |
| Msa0146470 | Msa0159560 | 0.827135 | 1.848845e-54 | -8.615850e-47 |
| Msa0159560 | Msa0169620 | 0.818797 | 1.625338e-52 | -8.615850e-47 |
| Msa0159560 | Msa0172350 | 0.802215 | 6.234371e-49 | -8.615850e-47 |
| Msa0159560 | Msa0183620 | 0.806727 | 7.148655e-50 | -8.615850e-47 |
| Msa0159560 | Msa0185390 | 0.837745 | 4.335394e-57 | -8.615850e-47 |
| Msa0159560 | Msa0207000 | 0.802611 | 5.166929e-49 | -8.615850e-47 |
| Msa0159560 | Msa0246690 | 0.803846 | 2.868187e-49 | -8.615850e-47 |
| Msa0159560 | Msa0248560 | 0.818202 | 2.217021e-52 | -8.615850e-47 |
| Msa0159560 | Msa0267760 | 0.806426 | 8.272452e-50 | -8.615850e-47 |
| Msa0159560 | Msa0284780 | 0.816547 | 5.228612e-52 | -8.615850e-47 |
| Msa0159560 | Msa0328210 | 0.810977 | 8.814933e-51 | -8.615850e-47 |
| Msa0159560 | Msa0411520 | 0.802241 | 6.160524e-49 | -8.615850e-47 |
| Msa0159560 | Msa0421800 | 0.801025 | 1.093691e-48 | -8.615850e-47 |
| Msa0159560 | Msa0469910 | -0.816136 | 6.459276e-52 | -8.615850e-47 |
| Msa0159560 | Msa0486570 | 0.808310 | 3.297468e-50 | -8.615850e-47 |
| Msa0159560 | Msa0508400 | 0.802711 | 4.928791e-49 | -8.615850e-47 |
| Msa0159560 | Msa0510440 | 0.808232 | 3.426293e-50 | -8.615850e-47 |
| Msa0159560 | Msa0524090 | 0.818085 | 2.355545e-52 | -8.615850e-47 |
| Msa0159560 | Msa0524120 | 0.825287 | 5.088548e-54 | -8.615850e-47 |
| Msa0159560 | Msa0526710 | 0.801988 | 6.943835e-49 | -8.615850e-47 |
| Msa0159560 | Msa0535450 | 0.812492 | 4.125447e-51 | -8.615850e-47 |
| Msa0159560 | Msa0540320 | 0.805511 | 1.288766e-49 | -8.615850e-47 |
| Msa0159560 | Msa0546740 | 0.818534 | 1.864751e-52 | -8.615850e-47 |
| Msa0159560 | Msa0582110 | 0.807874 | 4.084354e-50 | -8.615850e-47 |
| Msa0159560 | Msa0590680 | 0.807750 | 4.340187e-50 | -8.615850e-47 |
| Msa0159560 | Msa0606060 | 0.801091 | 1.060396e-48 | -8.615850e-47 |
| Msa0159560 | Msa0624730 | 0.809059 | 2.281573e-50 | -8.615850e-47 |
| Msa0159560 | Msa0631840 | 0.802034 | 6.793279e-49 | -8.615850e-47 |
| Msa0159560 | Msa0638690 | 0.803490 | 3.400286e-49 | -8.615850e-47 |
| Msa0159560 | Msa0642650 | 0.826768 | 2.262509e-54 | -8.615850e-47 |
| Msa0159560 | Msa0667220 | 0.813999 | 1.926370e-51 | -8.615850e-47 |
| Msa0159560 | Msa0674220 | 0.816029 | 6.827058e-52 | -8.615850e-47 |
| Msa0159560 | Msa0681890 | 0.833883 | 4.129050e-56 | -8.615850e-47 |
| Msa0159560 | Msa0686610 | 0.812766 | 3.594044e-51 | -8.615850e-47 |
| Msa0159560 | Msa0703720 | 0.817167 | 3.794141e-52 | -8.615850e-47 |
| Msa0159560 | Msa0812660 | 0.800765 | 1.235845e-48 | -8.615850e-47 |
| Msa0159560 | Msa0820670 | 0.810746 | 9.890555e-51 | -8.615850e-47 |
| Msa0159560 | Msa0872660 | 0.800449 | 1.433462e-48 | -8.615850e-47 |
| Msa0159560 | Msa0903330 | 0.820942 | 5.254471e-53 | -8.615850e-47 |
| Msa0159560 | Msa0907700 | 0.814105 | 1.825288e-51 | -8.615850e-47 |
| Msa0159560 | Msa0922540 | 0.801099 | 1.056176e-48 | -8.615850e-47 |
| Msa0159560 | Msa0925160 | 0.809172 | 2.158169e-50 | -8.615850e-47 |
| Msa0159560 | Msa0930330 | 0.814128 | 1.803379e-51 | -8.615850e-47 |
| Msa0159560 | Msa0955260 | 0.802365 | 5.807236e-49 | -8.615850e-47 |
| Msa0159560 | Msa0958020 | 0.846165 | 2.577982e-59 | -8.615850e-47 |
| Msa0159560 | Msa0990520 | 0.845832 | 3.175289e-59 | -8.615850e-47 |
| Msa0159560 | Msa0992590 | 0.807229 | 5.597823e-50 | -8.615850e-47 |
| Msa0159560 | Msa1002040 | 0.826655 | 2.408255e-54 | -8.615850e-47 |
| Msa0159560 | Msa1015060 | 0.808822 | 2.563721e-50 | -8.615850e-47 |
| Msa0159560 | Msa1119720 | 0.809639 | 1.712786e-50 | -8.615850e-47 |
| Msa0159560 | Msa1159100 | 0.805401 | 1.359058e-49 | -8.615850e-47 |
| Msa0159560 | Msa1220450 | -0.816974 | 4.193470e-52 | -8.615850e-47 |
| Msa0159560 | Msa1220460 | -0.805773 | 1.135255e-49 | -8.615850e-47 |
| Msa0159560 | Msa1220480 | -0.803733 | 3.027546e-49 | -8.615850e-47 |
| Msa0159560 | Msa1223840 | 0.805015 | 1.636589e-49 | -8.615850e-47 |
| Msa0159560 | Msa1265960 | 0.800443 | 1.437989e-48 | -8.615850e-47 |
| Msa0159560 | Msa1341930 | 0.841287 | 5.206320e-58 | -8.615850e-47 |
| Msa0159560 | Msa1352290 | 0.825042 | 5.816353e-54 | -8.615850e-47 |
| Msa0159560 | Msa1354040 | 0.803297 | 3.728122e-49 | -8.615850e-47 |
| Msa0159560 | Msa1373510 | 0.841996 | 3.384944e-58 | -8.615850e-47 |
| Msa0159560 | Msa1381130 | 0.843797 | 1.123386e-58 | -8.615850e-47 |
| Msa0159560 | Msa1456650 | 0.811070 | 8.414332e-51 | -8.615850e-47 |
| Msa0159560 | Msa1456810 | 0.821731 | 3.454936e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159560 | MtrunA17_Chr4g0020931 | 95.285 | 403 | 12 | 3 | 1 | 400 | 1 | 399 | 0.0 | 753 |
| Msa0159560 | MtrunA17_Chr1g0171891 | 93.797 | 403 | 17 | 3 | 1 | 400 | 1 | 398 | 0.0 | 736 |
| Msa0159560 | MtrunA17_Chr5g0428491 | 82.879 | 257 | 36 | 1 | 44 | 300 | 73 | 321 | 1.01e-144 | 414 |
| Msa0159560 | MtrunA17_Chr5g0428501 | 82.540 | 63 | 11 | 0 | 337 | 399 | 1 | 63 | 2.21e-32 | 116 |
| Msa0159560 | MtrunA17_Chr3g0089851 | 22.957 | 257 | 192 | 5 | 69 | 321 | 170 | 424 | 3.58e-12 | 67.8 |
| Msa0159560 | MtrunA17_Chr2g0297991 | 19.079 | 304 | 239 | 3 | 91 | 388 | 508 | 810 | 9.37e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0159560 | AT3G42630.1 | 57.658 | 333 | 140 | 1 | 68 | 400 | 84 | 415 | 5.39e-144 | 416 |
| Msa0159560 | AT4G14190.1 | 26.829 | 328 | 226 | 5 | 71 | 388 | 172 | 495 | 4.58e-24 | 104 |
Find 73 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCGAATTGATTCAAAATT+AGG | 0.136404 | 1_4:+30176755 | Msa0159560:CDS |
| ATGTTACGACGTTTAATATT+AGG | 0.162570 | 1_4:+30177080 | Msa0159560:CDS |
| ATAGGAGGAACCAGATATTT+TGG | 0.193003 | 1_4:+30177428 | Msa0159560:CDS |
| TAGAAAGCTTGGAAGGAATT+TGG | 0.211995 | 1_4:+30177225 | Msa0159560:CDS |
| GTTCCTGATTTGGTTACTTA+TGG | 0.229795 | 1_4:+30177178 | Msa0159560:CDS |
| TTTCGAGGATGGCGCTGTTT+TGG | 0.262354 | 1_4:+30177113 | Msa0159560:CDS |
| ATGTTACACTACACACAAAA+TGG | 0.264591 | 1_4:+30176473 | Msa0159560:CDS |
| GTTAATAGTTCCAAAATATC+TGG | 0.282061 | 1_4:-30177438 | None:intergenic |
| AACAACAGAAATGGAGTTAT+AGG | 0.284479 | 1_4:+30177374 | Msa0159560:CDS |
| GCTTGCAGAGAGAGTTTGTT+AGG | 0.289369 | 1_4:+30177032 | Msa0159560:CDS |
| TGTTACGACGTTTAATATTA+GGG | 0.297675 | 1_4:+30177081 | Msa0159560:CDS |
| ATTGTGAATAAGTAATGAAT+TGG | 0.304763 | 1_4:-30176390 | None:intergenic |
| GAAGAGAAAATTCTATGAAC+TGG | 0.306911 | 1_4:+30176910 | Msa0159560:CDS |
| GTGATTAGGGCTATGGCTTA+TGG | 0.328397 | 1_4:+30176878 | Msa0159560:CDS |
| AATGAAATGGAGAATGCTTA+TGG | 0.332682 | 1_4:+30176818 | Msa0159560:CDS |
| TATTGAGGAAAATGTGATTA+GGG | 0.333668 | 1_4:+30176865 | Msa0159560:CDS |
| TGAAAAGGTTGTTCCTGATT+TGG | 0.336453 | 1_4:+30177168 | Msa0159560:CDS |
| TACAGATCCGTTTGTGTTTG+AGG | 0.346471 | 1_4:+30177294 | Msa0159560:CDS |
| GATGAGGTTACGAGAATGAT+AGG | 0.350635 | 1_4:-30176339 | None:intergenic |
| ACAACAGAAATGGAGTTATA+GGG | 0.350987 | 1_4:+30177375 | Msa0159560:CDS |
| TTTGTTAGGATGGTTGAATC+AGG | 0.352533 | 1_4:+30177046 | Msa0159560:CDS |
| ATGGAAGGTTTAAGAGATCT+AGG | 0.371453 | 1_4:+30176837 | Msa0159560:CDS |
| AATATCTTAAGAAACATTAT+AGG | 0.375645 | 1_4:+30177410 | Msa0159560:CDS |
| TTATTGAGGAAAATGTGATT+AGG | 0.375877 | 1_4:+30176864 | Msa0159560:CDS |
| GGTTTAGGTAGGAGAAATGT+TGG | 0.378690 | 1_4:+30176953 | Msa0159560:CDS |
| TGCAGGAAACTTAAAATTGA+TGG | 0.380524 | 1_4:+30176700 | Msa0159560:CDS |
| TTTGTTAGAGATGTTGGTTT+AGG | 0.396561 | 1_4:+30176938 | Msa0159560:CDS |
| GGTGAGTTTGTTAGAGATGT+TGG | 0.404844 | 1_4:+30176932 | Msa0159560:CDS |
| AATCAATGAAATGGTTTCAA+AGG | 0.408380 | 1_4:+30176730 | Msa0159560:CDS |
| AAGGGTGAAATGAACTGTTT+AGG | 0.410470 | 1_4:-30176532 | None:intergenic |
| GGAAGAAACAATCAATGAAA+TGG | 0.415135 | 1_4:+30176721 | Msa0159560:CDS |
| CAACCATAAGTAACCAAATC+AGG | 0.419881 | 1_4:-30177181 | None:intergenic |
| ACAAGACACAACAACAGAAA+TGG | 0.420204 | 1_4:+30177365 | Msa0159560:CDS |
| TTGTGTTGTGGAGGCTTACT+TGG | 0.423615 | 1_4:+30177201 | Msa0159560:CDS |
| ATCAATGAAATGGTTTCAAA+GGG | 0.437570 | 1_4:+30176731 | Msa0159560:CDS |
| ATCTTAGTATTGAACATATG+AGG | 0.444340 | 1_4:+30177143 | Msa0159560:CDS |
| AGGTGACTTTCATTTGAGTT+CGG | 0.445273 | 1_4:+30177327 | Msa0159560:CDS |
| TCGTTGGCAATCTCTTGTTT+CGG | 0.448704 | 1_4:+30176674 | Msa0159560:CDS |
| GACGTTTAATATTAGGGCTA+TGG | 0.449092 | 1_4:+30177087 | Msa0159560:CDS |
| ATCTCTTGTTTCGGAAATGC+AGG | 0.453030 | 1_4:+30176683 | Msa0159560:CDS |
| ATTACGAGAAGAGAGGGAAA+TGG | 0.456662 | 1_4:-30176264 | None:intergenic |
| ACGAGTAAAACTGAGGCAAA+AGG | 0.464213 | 1_4:-30176655 | None:intergenic |
| GGAAAATGTGATTAGGGCTA+TGG | 0.480637 | 1_4:+30176871 | Msa0159560:CDS |
| GCTTACTTGGATAGAAAGCT+TGG | 0.481941 | 1_4:+30177214 | Msa0159560:CDS |
| GGTTGAATCAGGGTTTCGTC+CGG | 0.489825 | 1_4:+30177057 | Msa0159560:CDS |
| GCAGAGAGAGTTTGTTAGGA+TGG | 0.492223 | 1_4:+30177036 | Msa0159560:CDS |
| GTTTAGGTAGGAGAAATGTT+GGG | 0.493418 | 1_4:+30176954 | Msa0159560:CDS |
| AAGAATATTACGAGAAGAGA+GGG | 0.495123 | 1_4:-30176270 | None:intergenic |
| TTGTGAATAAGTAATGAATT+GGG | 0.501393 | 1_4:-30176389 | None:intergenic |
| ATATTAAACGTCGTAACATC+CGG | 0.502209 | 1_4:-30177076 | None:intergenic |
| TTAGAGATGTTGGTTTAGGT+AGG | 0.503038 | 1_4:+30176942 | Msa0159560:CDS |
| CGAGTAAAACTGAGGCAAAA+GGG | 0.509200 | 1_4:-30176654 | None:intergenic |
| GAAGAATATTACGAGAAGAG+AGG | 0.513595 | 1_4:-30176271 | None:intergenic |
| TTGTTAGGATGGTTGAATCA+GGG | 0.518440 | 1_4:+30177047 | Msa0159560:CDS |
| TGAACATATGAGGAGTGAAA+AGG | 0.526259 | 1_4:+30177153 | Msa0159560:CDS |
| CCTAAAACCTCAAACACAAA+CGG | 0.528045 | 1_4:-30177301 | None:intergenic |
| TACTTATGGTTGTGTTGTGG+AGG | 0.538029 | 1_4:+30177192 | Msa0159560:CDS |
| TAGAAATGAAATGAAGAGAA+GGG | 0.540554 | 1_4:-30176550 | None:intergenic |
| GGTTACTTATGGTTGTGTTG+TGG | 0.542271 | 1_4:+30177189 | Msa0159560:CDS |
| TTAGAAATGAAATGAAGAGA+AGG | 0.544711 | 1_4:-30176551 | None:intergenic |
| ACTTGGATAGAAAGCTTGGA+AGG | 0.554688 | 1_4:+30177218 | Msa0159560:CDS |
| AAATGGAGAATGCTTATGGA+AGG | 0.557066 | 1_4:+30176822 | Msa0159560:CDS |
| TTGTGGTGAAGATGAAGATG+AGG | 0.558013 | 1_4:-30176312 | None:intergenic |
| AACGGATCTGTAAACAATCT+CGG | 0.566471 | 1_4:-30177283 | None:intergenic |
| ATGAGGTTACGAGAATGATA+GGG | 0.576750 | 1_4:-30176338 | None:intergenic |
| TGACTTTCATTTGAGTTCGG+AGG | 0.582232 | 1_4:+30177330 | Msa0159560:CDS |
| ATCTTAAGAAACATTATAGG+AGG | 0.601959 | 1_4:+30177413 | Msa0159560:CDS |
| GTTTAGGAGTTGTTCCCATG+TGG | 0.602834 | 1_4:-30176516 | None:intergenic |
| TTCATAAATCTCAAACCACA+TGG | 0.606720 | 1_4:+30176501 | Msa0159560:CDS |
| AAGAGAAAATTCTATGAACT+GGG | 0.611936 | 1_4:+30176911 | Msa0159560:CDS |
| GTGTAGTGTAACATCAATGA+AGG | 0.639366 | 1_4:-30176464 | None:intergenic |
| TCATAAATCTCAAACCACAT+GGG | 0.675698 | 1_4:+30176502 | Msa0159560:CDS |
| ATTGCCAACGAGTAAAACTG+AGG | 0.729441 | 1_4:-30176662 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATCTTAAGAAACATTAT+AGG | + | chr1_4:30177410-30177429 | Msa0159560:CDS | 15.0% |
| !! | AATATCTTAAGAAACATTAT+AGG | + | chr1_4:30177410-30177429 | Msa0159560:CDS | 15.0% |
| !! | TTGTGAATAAGTAATGAATT+GGG | - | chr1_4:30176392-30176411 | None:intergenic | 20.0% |
| !! | ATTGTGAATAAGTAATGAAT+TGG | - | chr1_4:30176393-30176412 | None:intergenic | 20.0% |
| !!! | TTTCGAATTGATTCAAAATT+AGG | + | chr1_4:30176755-30176774 | Msa0159560:CDS | 20.0% |
| !!! | CTTTTGTATTATAGTGTTTT+TGG | + | chr1_4:30176788-30176807 | Msa0159560:CDS | 20.0% |
| !! | TTGTGAATAAGTAATGAATT+GGG | - | chr1_4:30176392-30176411 | None:intergenic | 20.0% |
| !! | ATTGTGAATAAGTAATGAAT+TGG | - | chr1_4:30176393-30176412 | None:intergenic | 20.0% |
| !!! | TTTCGAATTGATTCAAAATT+AGG | + | chr1_4:30176755-30176774 | Msa0159560:CDS | 20.0% |
| !!! | CTTTTGTATTATAGTGTTTT+TGG | + | chr1_4:30176788-30176807 | Msa0159560:CDS | 20.0% |
| !!! | TTGCTGAAAAATTGGTTTTT+CGG | - | chr1_4:30176369-30176388 | None:intergenic | 25.0% |
| ! | TAGAAATGAAATGAAGAGAA+GGG | - | chr1_4:30176553-30176572 | None:intergenic | 25.0% |
| ! | TTAGAAATGAAATGAAGAGA+AGG | - | chr1_4:30176554-30176573 | None:intergenic | 25.0% |
| ! | AATCAATGAAATGGTTTCAA+AGG | + | chr1_4:30176730-30176749 | Msa0159560:CDS | 25.0% |
| ! | ATCAATGAAATGGTTTCAAA+GGG | + | chr1_4:30176731-30176750 | Msa0159560:CDS | 25.0% |
| !!! | TTTTGGTAGTTTGAATGAAA+TGG | + | chr1_4:30176805-30176824 | Msa0159560:CDS | 25.0% |
| ! | TTATTGAGGAAAATGTGATT+AGG | + | chr1_4:30176864-30176883 | Msa0159560:CDS | 25.0% |
| ! | TATTGAGGAAAATGTGATTA+GGG | + | chr1_4:30176865-30176884 | Msa0159560:CDS | 25.0% |
| ! | AAGAGAAAATTCTATGAACT+GGG | + | chr1_4:30176911-30176930 | Msa0159560:CDS | 25.0% |
| ! | ATGTTACGACGTTTAATATT+AGG | + | chr1_4:30177080-30177099 | Msa0159560:CDS | 25.0% |
| ! | TGTTACGACGTTTAATATTA+GGG | + | chr1_4:30177081-30177100 | Msa0159560:CDS | 25.0% |
| !! | ATCTTAGTATTGAACATATG+AGG | + | chr1_4:30177143-30177162 | Msa0159560:CDS | 25.0% |
| !!! | GGAGTTTGTTTTGAATAAAA+TGG | + | chr1_4:30177246-30177265 | Msa0159560:CDS | 25.0% |
| !!! | TGTTTTGAATAAAATGGATG+TGG | + | chr1_4:30177252-30177271 | Msa0159560:CDS | 25.0% |
| ! | ATCTTAAGAAACATTATAGG+AGG | + | chr1_4:30177413-30177432 | Msa0159560:CDS | 25.0% |
| !!! | TTGCTGAAAAATTGGTTTTT+CGG | - | chr1_4:30176369-30176388 | None:intergenic | 25.0% |
| ! | TAGAAATGAAATGAAGAGAA+GGG | - | chr1_4:30176553-30176572 | None:intergenic | 25.0% |
| ! | TTAGAAATGAAATGAAGAGA+AGG | - | chr1_4:30176554-30176573 | None:intergenic | 25.0% |
| ! | AATCAATGAAATGGTTTCAA+AGG | + | chr1_4:30176730-30176749 | Msa0159560:CDS | 25.0% |
| ! | ATCAATGAAATGGTTTCAAA+GGG | + | chr1_4:30176731-30176750 | Msa0159560:CDS | 25.0% |
| !!! | TTTTGGTAGTTTGAATGAAA+TGG | + | chr1_4:30176805-30176824 | Msa0159560:CDS | 25.0% |
| ! | TTATTGAGGAAAATGTGATT+AGG | + | chr1_4:30176864-30176883 | Msa0159560:CDS | 25.0% |
| ! | TATTGAGGAAAATGTGATTA+GGG | + | chr1_4:30176865-30176884 | Msa0159560:CDS | 25.0% |
| ! | AAGAGAAAATTCTATGAACT+GGG | + | chr1_4:30176911-30176930 | Msa0159560:CDS | 25.0% |
| ! | ATGTTACGACGTTTAATATT+AGG | + | chr1_4:30177080-30177099 | Msa0159560:CDS | 25.0% |
| ! | TGTTACGACGTTTAATATTA+GGG | + | chr1_4:30177081-30177100 | Msa0159560:CDS | 25.0% |
| !! | ATCTTAGTATTGAACATATG+AGG | + | chr1_4:30177143-30177162 | Msa0159560:CDS | 25.0% |
| !!! | GGAGTTTGTTTTGAATAAAA+TGG | + | chr1_4:30177246-30177265 | Msa0159560:CDS | 25.0% |
| !!! | TGTTTTGAATAAAATGGATG+TGG | + | chr1_4:30177252-30177271 | Msa0159560:CDS | 25.0% |
| ! | ATCTTAAGAAACATTATAGG+AGG | + | chr1_4:30177413-30177432 | Msa0159560:CDS | 25.0% |
| AAGAATATTACGAGAAGAGA+GGG | - | chr1_4:30176273-30176292 | None:intergenic | 30.0% | |
| ATGTTACACTACACACAAAA+TGG | + | chr1_4:30176473-30176492 | Msa0159560:CDS | 30.0% | |
| TTCATAAATCTCAAACCACA+TGG | + | chr1_4:30176501-30176520 | Msa0159560:CDS | 30.0% | |
| TCATAAATCTCAAACCACAT+GGG | + | chr1_4:30176502-30176521 | Msa0159560:CDS | 30.0% | |
| TGCAGGAAACTTAAAATTGA+TGG | + | chr1_4:30176700-30176719 | Msa0159560:CDS | 30.0% | |
| GGAAGAAACAATCAATGAAA+TGG | + | chr1_4:30176721-30176740 | Msa0159560:CDS | 30.0% | |
| AATGAAATGGAGAATGCTTA+TGG | + | chr1_4:30176818-30176837 | Msa0159560:CDS | 30.0% | |
| !!! | GAGATCTAGGTTTTTTATTG+AGG | + | chr1_4:30176850-30176869 | Msa0159560:CDS | 30.0% |
| GAAGAGAAAATTCTATGAAC+TGG | + | chr1_4:30176910-30176929 | Msa0159560:CDS | 30.0% | |
| !! | TTTGTTAGAGATGTTGGTTT+AGG | + | chr1_4:30176938-30176957 | Msa0159560:CDS | 30.0% |
| ATATTAAACGTCGTAACATC+CGG | - | chr1_4:30177079-30177098 | None:intergenic | 30.0% | |
| AACAACAGAAATGGAGTTAT+AGG | + | chr1_4:30177374-30177393 | Msa0159560:CDS | 30.0% | |
| ACAACAGAAATGGAGTTATA+GGG | + | chr1_4:30177375-30177394 | Msa0159560:CDS | 30.0% | |
| AAGAATATTACGAGAAGAGA+GGG | - | chr1_4:30176273-30176292 | None:intergenic | 30.0% | |
| ATGTTACACTACACACAAAA+TGG | + | chr1_4:30176473-30176492 | Msa0159560:CDS | 30.0% | |
| TTCATAAATCTCAAACCACA+TGG | + | chr1_4:30176501-30176520 | Msa0159560:CDS | 30.0% | |
| TCATAAATCTCAAACCACAT+GGG | + | chr1_4:30176502-30176521 | Msa0159560:CDS | 30.0% | |
| TGCAGGAAACTTAAAATTGA+TGG | + | chr1_4:30176700-30176719 | Msa0159560:CDS | 30.0% | |
| GGAAGAAACAATCAATGAAA+TGG | + | chr1_4:30176721-30176740 | Msa0159560:CDS | 30.0% | |
| AATGAAATGGAGAATGCTTA+TGG | + | chr1_4:30176818-30176837 | Msa0159560:CDS | 30.0% | |
| !!! | GAGATCTAGGTTTTTTATTG+AGG | + | chr1_4:30176850-30176869 | Msa0159560:CDS | 30.0% |
| GAAGAGAAAATTCTATGAAC+TGG | + | chr1_4:30176910-30176929 | Msa0159560:CDS | 30.0% | |
| !! | TTTGTTAGAGATGTTGGTTT+AGG | + | chr1_4:30176938-30176957 | Msa0159560:CDS | 30.0% |
| ATATTAAACGTCGTAACATC+CGG | - | chr1_4:30177079-30177098 | None:intergenic | 30.0% | |
| AACAACAGAAATGGAGTTAT+AGG | + | chr1_4:30177374-30177393 | Msa0159560:CDS | 30.0% | |
| ACAACAGAAATGGAGTTATA+GGG | + | chr1_4:30177375-30177394 | Msa0159560:CDS | 30.0% | |
| GAAGAATATTACGAGAAGAG+AGG | - | chr1_4:30176274-30176293 | None:intergenic | 35.0% | |
| ATGAGGTTACGAGAATGATA+GGG | - | chr1_4:30176341-30176360 | None:intergenic | 35.0% | |
| ! | GAATTGGGTTGCTGAAAAAT+TGG | - | chr1_4:30176377-30176396 | None:intergenic | 35.0% |
| GTGTAGTGTAACATCAATGA+AGG | - | chr1_4:30176467-30176486 | None:intergenic | 35.0% | |
| AAGGGTGAAATGAACTGTTT+AGG | - | chr1_4:30176535-30176554 | None:intergenic | 35.0% | |
| AAATGGAGAATGCTTATGGA+AGG | + | chr1_4:30176822-30176841 | Msa0159560:CDS | 35.0% | |
| ATGGAAGGTTTAAGAGATCT+AGG | + | chr1_4:30176837-30176856 | Msa0159560:CDS | 35.0% | |
| !! | TTAGAGATGTTGGTTTAGGT+AGG | + | chr1_4:30176942-30176961 | Msa0159560:CDS | 35.0% |
| GTTTAGGTAGGAGAAATGTT+GGG | + | chr1_4:30176954-30176973 | Msa0159560:CDS | 35.0% | |
| ! | GAAATGTTGGGAATGTTTTG+TGG | + | chr1_4:30176966-30176985 | Msa0159560:CDS | 35.0% |
| TTTGTTAGGATGGTTGAATC+AGG | + | chr1_4:30177046-30177065 | Msa0159560:CDS | 35.0% | |
| TTGTTAGGATGGTTGAATCA+GGG | + | chr1_4:30177047-30177066 | Msa0159560:CDS | 35.0% | |
| GACGTTTAATATTAGGGCTA+TGG | + | chr1_4:30177087-30177106 | Msa0159560:CDS | 35.0% | |
| TGAACATATGAGGAGTGAAA+AGG | + | chr1_4:30177153-30177172 | Msa0159560:CDS | 35.0% | |
| TGAAAAGGTTGTTCCTGATT+TGG | + | chr1_4:30177168-30177187 | Msa0159560:CDS | 35.0% | |
| !! | GTTCCTGATTTGGTTACTTA+TGG | + | chr1_4:30177178-30177197 | Msa0159560:CDS | 35.0% |
| CAACCATAAGTAACCAAATC+AGG | - | chr1_4:30177184-30177203 | None:intergenic | 35.0% | |
| TAGAAAGCTTGGAAGGAATT+TGG | + | chr1_4:30177225-30177244 | Msa0159560:CDS | 35.0% | |
| AACGGATCTGTAAACAATCT+CGG | - | chr1_4:30177286-30177305 | None:intergenic | 35.0% | |
| CCTAAAACCTCAAACACAAA+CGG | - | chr1_4:30177304-30177323 | None:intergenic | 35.0% | |
| !!! | GTGTTTGAGGTTTTAGGTAA+AGG | + | chr1_4:30177307-30177326 | Msa0159560:CDS | 35.0% |
| ! | AGGTGACTTTCATTTGAGTT+CGG | + | chr1_4:30177327-30177346 | Msa0159560:CDS | 35.0% |
| ACAAGACACAACAACAGAAA+TGG | + | chr1_4:30177365-30177384 | Msa0159560:CDS | 35.0% | |
| ! | ATAGGAGGAACCAGATATTT+TGG | + | chr1_4:30177428-30177447 | Msa0159560:CDS | 35.0% |
| GAAGAATATTACGAGAAGAG+AGG | - | chr1_4:30176274-30176293 | None:intergenic | 35.0% | |
| ATGAGGTTACGAGAATGATA+GGG | - | chr1_4:30176341-30176360 | None:intergenic | 35.0% | |
| ! | GAATTGGGTTGCTGAAAAAT+TGG | - | chr1_4:30176377-30176396 | None:intergenic | 35.0% |
| GTGTAGTGTAACATCAATGA+AGG | - | chr1_4:30176467-30176486 | None:intergenic | 35.0% | |
| AAGGGTGAAATGAACTGTTT+AGG | - | chr1_4:30176535-30176554 | None:intergenic | 35.0% | |
| AAATGGAGAATGCTTATGGA+AGG | + | chr1_4:30176822-30176841 | Msa0159560:CDS | 35.0% | |
| ATGGAAGGTTTAAGAGATCT+AGG | + | chr1_4:30176837-30176856 | Msa0159560:CDS | 35.0% | |
| !! | TTAGAGATGTTGGTTTAGGT+AGG | + | chr1_4:30176942-30176961 | Msa0159560:CDS | 35.0% |
| GTTTAGGTAGGAGAAATGTT+GGG | + | chr1_4:30176954-30176973 | Msa0159560:CDS | 35.0% | |
| ! | GAAATGTTGGGAATGTTTTG+TGG | + | chr1_4:30176966-30176985 | Msa0159560:CDS | 35.0% |
| TTTGTTAGGATGGTTGAATC+AGG | + | chr1_4:30177046-30177065 | Msa0159560:CDS | 35.0% | |
| TTGTTAGGATGGTTGAATCA+GGG | + | chr1_4:30177047-30177066 | Msa0159560:CDS | 35.0% | |
| GACGTTTAATATTAGGGCTA+TGG | + | chr1_4:30177087-30177106 | Msa0159560:CDS | 35.0% | |
| TGAACATATGAGGAGTGAAA+AGG | + | chr1_4:30177153-30177172 | Msa0159560:CDS | 35.0% | |
| TGAAAAGGTTGTTCCTGATT+TGG | + | chr1_4:30177168-30177187 | Msa0159560:CDS | 35.0% | |
| !! | GTTCCTGATTTGGTTACTTA+TGG | + | chr1_4:30177178-30177197 | Msa0159560:CDS | 35.0% |
| CAACCATAAGTAACCAAATC+AGG | - | chr1_4:30177184-30177203 | None:intergenic | 35.0% | |
| TAGAAAGCTTGGAAGGAATT+TGG | + | chr1_4:30177225-30177244 | Msa0159560:CDS | 35.0% | |
| AACGGATCTGTAAACAATCT+CGG | - | chr1_4:30177286-30177305 | None:intergenic | 35.0% | |
| CCTAAAACCTCAAACACAAA+CGG | - | chr1_4:30177304-30177323 | None:intergenic | 35.0% | |
| !!! | GTGTTTGAGGTTTTAGGTAA+AGG | + | chr1_4:30177307-30177326 | Msa0159560:CDS | 35.0% |
| ! | AGGTGACTTTCATTTGAGTT+CGG | + | chr1_4:30177327-30177346 | Msa0159560:CDS | 35.0% |
| ACAAGACACAACAACAGAAA+TGG | + | chr1_4:30177365-30177384 | Msa0159560:CDS | 35.0% | |
| ! | ATAGGAGGAACCAGATATTT+TGG | + | chr1_4:30177428-30177447 | Msa0159560:CDS | 35.0% |
| ATTACGAGAAGAGAGGGAAA+TGG | - | chr1_4:30176267-30176286 | None:intergenic | 40.0% | |
| TTGTGGTGAAGATGAAGATG+AGG | - | chr1_4:30176315-30176334 | None:intergenic | 40.0% | |
| ! | CGAGAATGATAGGGTTTTTG+TGG | - | chr1_4:30176332-30176351 | None:intergenic | 40.0% |
| GATGAGGTTACGAGAATGAT+AGG | - | chr1_4:30176342-30176361 | None:intergenic | 40.0% | |
| !! | TTGGTTTTTCGGTAGTGATG+AGG | - | chr1_4:30176358-30176377 | None:intergenic | 40.0% |
| CGAGTAAAACTGAGGCAAAA+GGG | - | chr1_4:30176657-30176676 | None:intergenic | 40.0% | |
| ACGAGTAAAACTGAGGCAAA+AGG | - | chr1_4:30176658-30176677 | None:intergenic | 40.0% | |
| ! | TTTGCCTCAGTTTTACTCGT+TGG | + | chr1_4:30176658-30176677 | Msa0159560:CDS | 40.0% |
| ATTGCCAACGAGTAAAACTG+AGG | - | chr1_4:30176665-30176684 | None:intergenic | 40.0% | |
| ! | TCGTTGGCAATCTCTTGTTT+CGG | + | chr1_4:30176674-30176693 | Msa0159560:CDS | 40.0% |
| ! | ATCTCTTGTTTCGGAAATGC+AGG | + | chr1_4:30176683-30176702 | Msa0159560:CDS | 40.0% |
| GGAAAATGTGATTAGGGCTA+TGG | + | chr1_4:30176871-30176890 | Msa0159560:CDS | 40.0% | |
| !! | GGTGAGTTTGTTAGAGATGT+TGG | + | chr1_4:30176932-30176951 | Msa0159560:CDS | 40.0% |
| GGTTTAGGTAGGAGAAATGT+TGG | + | chr1_4:30176953-30176972 | Msa0159560:CDS | 40.0% | |
| GGTTACTTATGGTTGTGTTG+TGG | + | chr1_4:30177189-30177208 | Msa0159560:CDS | 40.0% | |
| TACTTATGGTTGTGTTGTGG+AGG | + | chr1_4:30177192-30177211 | Msa0159560:CDS | 40.0% | |
| GCTTACTTGGATAGAAAGCT+TGG | + | chr1_4:30177214-30177233 | Msa0159560:CDS | 40.0% | |
| ACTTGGATAGAAAGCTTGGA+AGG | + | chr1_4:30177218-30177237 | Msa0159560:CDS | 40.0% | |
| TACAGATCCGTTTGTGTTTG+AGG | + | chr1_4:30177294-30177313 | Msa0159560:CDS | 40.0% | |
| !! | CCGTTTGTGTTTGAGGTTTT+AGG | + | chr1_4:30177301-30177320 | Msa0159560:CDS | 40.0% |
| ! | TGACTTTCATTTGAGTTCGG+AGG | + | chr1_4:30177330-30177349 | Msa0159560:CDS | 40.0% |
| ATTACGAGAAGAGAGGGAAA+TGG | - | chr1_4:30176267-30176286 | None:intergenic | 40.0% | |
| TTGTGGTGAAGATGAAGATG+AGG | - | chr1_4:30176315-30176334 | None:intergenic | 40.0% | |
| ! | CGAGAATGATAGGGTTTTTG+TGG | - | chr1_4:30176332-30176351 | None:intergenic | 40.0% |
| GATGAGGTTACGAGAATGAT+AGG | - | chr1_4:30176342-30176361 | None:intergenic | 40.0% | |
| !! | TTGGTTTTTCGGTAGTGATG+AGG | - | chr1_4:30176358-30176377 | None:intergenic | 40.0% |
| CGAGTAAAACTGAGGCAAAA+GGG | - | chr1_4:30176657-30176676 | None:intergenic | 40.0% | |
| ACGAGTAAAACTGAGGCAAA+AGG | - | chr1_4:30176658-30176677 | None:intergenic | 40.0% | |
| ! | TTTGCCTCAGTTTTACTCGT+TGG | + | chr1_4:30176658-30176677 | Msa0159560:CDS | 40.0% |
| ATTGCCAACGAGTAAAACTG+AGG | - | chr1_4:30176665-30176684 | None:intergenic | 40.0% | |
| ! | TCGTTGGCAATCTCTTGTTT+CGG | + | chr1_4:30176674-30176693 | Msa0159560:CDS | 40.0% |
| ! | ATCTCTTGTTTCGGAAATGC+AGG | + | chr1_4:30176683-30176702 | Msa0159560:CDS | 40.0% |
| GGAAAATGTGATTAGGGCTA+TGG | + | chr1_4:30176871-30176890 | Msa0159560:CDS | 40.0% | |
| !! | GGTGAGTTTGTTAGAGATGT+TGG | + | chr1_4:30176932-30176951 | Msa0159560:CDS | 40.0% |
| GGTTTAGGTAGGAGAAATGT+TGG | + | chr1_4:30176953-30176972 | Msa0159560:CDS | 40.0% | |
| GGTTACTTATGGTTGTGTTG+TGG | + | chr1_4:30177189-30177208 | Msa0159560:CDS | 40.0% | |
| TACTTATGGTTGTGTTGTGG+AGG | + | chr1_4:30177192-30177211 | Msa0159560:CDS | 40.0% | |
| GCTTACTTGGATAGAAAGCT+TGG | + | chr1_4:30177214-30177233 | Msa0159560:CDS | 40.0% | |
| ACTTGGATAGAAAGCTTGGA+AGG | + | chr1_4:30177218-30177237 | Msa0159560:CDS | 40.0% | |
| TACAGATCCGTTTGTGTTTG+AGG | + | chr1_4:30177294-30177313 | Msa0159560:CDS | 40.0% | |
| !! | CCGTTTGTGTTTGAGGTTTT+AGG | + | chr1_4:30177301-30177320 | Msa0159560:CDS | 40.0% |
| ! | TGACTTTCATTTGAGTTCGG+AGG | + | chr1_4:30177330-30177349 | Msa0159560:CDS | 40.0% |
| GTTTAGGAGTTGTTCCCATG+TGG | - | chr1_4:30176519-30176538 | None:intergenic | 45.0% | |
| GTGATTAGGGCTATGGCTTA+TGG | + | chr1_4:30176878-30176897 | Msa0159560:CDS | 45.0% | |
| ! | GCTTGCAGAGAGAGTTTGTT+AGG | + | chr1_4:30177032-30177051 | Msa0159560:CDS | 45.0% |
| !! | GCAGAGAGAGTTTGTTAGGA+TGG | + | chr1_4:30177036-30177055 | Msa0159560:CDS | 45.0% |
| TTGTGTTGTGGAGGCTTACT+TGG | + | chr1_4:30177201-30177220 | Msa0159560:CDS | 45.0% | |
| !!! | TTTGAGTTCGGAGGCGTTTT+TGG | + | chr1_4:30177339-30177358 | Msa0159560:CDS | 45.0% |
| GTTTAGGAGTTGTTCCCATG+TGG | - | chr1_4:30176519-30176538 | None:intergenic | 45.0% | |
| GTGATTAGGGCTATGGCTTA+TGG | + | chr1_4:30176878-30176897 | Msa0159560:CDS | 45.0% | |
| ! | GCTTGCAGAGAGAGTTTGTT+AGG | + | chr1_4:30177032-30177051 | Msa0159560:CDS | 45.0% |
| !! | GCAGAGAGAGTTTGTTAGGA+TGG | + | chr1_4:30177036-30177055 | Msa0159560:CDS | 45.0% |
| TTGTGTTGTGGAGGCTTACT+TGG | + | chr1_4:30177201-30177220 | Msa0159560:CDS | 45.0% | |
| !!! | TTTGAGTTCGGAGGCGTTTT+TGG | + | chr1_4:30177339-30177358 | Msa0159560:CDS | 45.0% |
| GGTTGAATCAGGGTTTCGTC+CGG | + | chr1_4:30177057-30177076 | Msa0159560:CDS | 50.0% | |
| ! | TTAGGGCTATGGCGTTTTCG+AGG | + | chr1_4:30177098-30177117 | Msa0159560:CDS | 50.0% |
| ! | TTTCGAGGATGGCGCTGTTT+TGG | + | chr1_4:30177113-30177132 | Msa0159560:CDS | 50.0% |
| !! | TTCGAGGATGGCGCTGTTTT+GGG | + | chr1_4:30177114-30177133 | Msa0159560:CDS | 50.0% |
| GGTTGAATCAGGGTTTCGTC+CGG | + | chr1_4:30177057-30177076 | Msa0159560:CDS | 50.0% | |
| ! | TTAGGGCTATGGCGTTTTCG+AGG | + | chr1_4:30177098-30177117 | Msa0159560:CDS | 50.0% |
| ! | TTTCGAGGATGGCGCTGTTT+TGG | + | chr1_4:30177113-30177132 | Msa0159560:CDS | 50.0% |
| !! | TTCGAGGATGGCGCTGTTTT+GGG | + | chr1_4:30177114-30177133 | Msa0159560:CDS | 50.0% |
| !! | GGCTATGGCGTTTTCGAGGA+TGG | + | chr1_4:30177102-30177121 | Msa0159560:CDS | 55.0% |
| !! | GGCTATGGCGTTTTCGAGGA+TGG | + | chr1_4:30177102-30177121 | Msa0159560:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 30176257 | 30177459 | 30176257 | ID=Msa0159560;Name=Msa0159560 |
| chr1_4 | mRNA | 30176257 | 30177459 | 30176257 | ID=Msa0159560-mRNA-1;Parent=Msa0159560;Name=Msa0159560-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|-1|0|1|-1|1|1|0|400 |
| chr1_4 | exon | 30176257 | 30177459 | 30176257 | ID=Msa0159560-mRNA-1:exon:9675;Parent=Msa0159560-mRNA-1 |
| chr1_4 | CDS | 30176257 | 30177459 | 30176257 | ID=Msa0159560-mRNA-1:cds;Parent=Msa0159560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
