AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1119720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1119720 MtrunA17_Chr7g0252271 97.297 259 7 0 1 259 1 259 0.0 523
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1119720 AT3G26710.1 79.188 197 40 1 63 258 68 264 1.01e-111 322

Find 192 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTTAACTTGCTCCTTTC+TGG 0.008598 7_3:-68882150 None:intergenic
CATCTTCTTCTTCGTCTTCT+TGG 0.109185 7_3:+68885502 Msa1119720:three_prime_UTR
GGATCTCATTATGATATTTC+TGG 0.147844 7_3:-68882991 Msa1119730:CDS
AAACGAAGTTTCTTTGGTTT+TGG 0.222781 7_3:-68880797 None:intergenic
GAAACAGTTGCAGGAATTTC+AGG 0.237158 7_3:+68883480 Msa1119720:three_prime_UTR
ATGATATTTCTGGCAGAATT+AGG 0.242646 7_3:-68882981 Msa1119730:CDS
TTATCTCTGTTCCTGGTCTT+TGG 0.246420 7_3:+68880951 Msa1119720:CDS
TGCCGGATGTTGGCAATAAT+TGG 0.247297 7_3:+68881966 Msa1119720:CDS
TGGAAATCTGCTTAGCAAAT+AGG 0.273649 7_3:-68882603 None:intergenic
TTCTCATTTGCTCGACTTGT+TGG 0.274703 7_3:-68882229 None:intergenic
TATAGATGAAGGTGGAAATA+AGG 0.285189 7_3:+68881124 Msa1119720:CDS
GGTACCAACTTATTCATTCT+TGG 0.306788 7_3:-68882932 Msa1119730:CDS
TATGCAGAGGAGCTTATTAC+TGG 0.309200 7_3:+68882117 Msa1119720:intron
AACAGATGACGATGTGAAAT+TGG 0.317786 7_3:-68883172 Msa1119730:CDS
GATCGGTGTTTGCACACATC+TGG 0.323690 7_3:-68883070 Msa1119730:CDS
CTCCGAATTTCAAGTATGTT+TGG 0.327058 7_3:-68882750 None:intergenic
AGGGATAAACGAAGTTTCTT+TGG 0.332452 7_3:-68880803 None:intergenic
ATCATATCATAAATTACATT+TGG 0.332883 7_3:-68882623 None:intergenic
CTTCCCATTACATTTCTCTA+AGG 0.336957 7_3:+68885670 Msa1119720:three_prime_UTR
TTTGCATACTTTGTCCTAAC+AGG 0.340156 7_3:-68883372 Msa1119730:CDS
TGTAAGTAACATGAGAGAAT+TGG 0.342052 7_3:-68880876 None:intergenic
AGAGACTACTGGTTACTCTT+TGG 0.348247 7_3:+68880898 Msa1119720:CDS
GTGGAAGAAGGCGGTGGGAT+GGG 0.349403 7_3:+68885389 Msa1119720:three_prime_UTR
CAACATGTTCAATGGCTACT+TGG 0.358770 7_3:+68882518 Msa1119720:three_prime_UTR
GGGACCTGCACCATACAATT+TGG 0.359660 7_3:-68882956 Msa1119730:CDS
GCTAGTTATTATACTTCTCT+TGG 0.366409 7_3:+68880920 Msa1119720:CDS
TTCTTCTTCGTCTTCTTGGC+TGG 0.369574 7_3:+68885506 Msa1119720:three_prime_UTR
CGCCAAACATACTTGAAATT+CGG 0.375232 7_3:+68882748 Msa1119720:three_prime_UTR
GCCAACATCCGGCACGGTTA+TGG 0.378017 7_3:-68881957 None:intergenic
TCTTGTAGTACATCCTGTTC+TGG 0.379842 7_3:-68882320 None:intergenic
TGCATTCCCTTGCCAAATGC+TGG 0.381560 7_3:-68883045 Msa1119730:CDS
AAACAAACCTTCCGCCTGTT+AGG 0.384689 7_3:+68883358 Msa1119720:three_prime_UTR
CTGAAAGGAAGAAAGAATTC+AGG 0.385596 7_3:+68885329 Msa1119720:intron
TGGAAGAAGGCGGTGGGATG+GGG 0.385906 7_3:+68885390 Msa1119720:three_prime_UTR
ATGTTGGCAATAATTGGTTT+TGG 0.387394 7_3:+68881972 Msa1119720:CDS
CCGCCAAAGTCTCCAGCATT+TGG 0.391956 7_3:+68883033 Msa1119720:three_prime_UTR
AGAGGGAGATGGTGTGGATG+TGG 0.397897 7_3:-68880713 None:intergenic
AAAGGGCATGGTCTATGTTA+AGG 0.400126 7_3:+68882271 Msa1119720:CDS
GGAACTCAAGTTTAGTGAAA+AGG 0.402521 7_3:+68882253 Msa1119720:CDS
GGTTTACCAGTTGGATTTAA+CGG 0.402953 7_3:-68880628 None:intergenic
TCATATACAATCTTTGAAGA+TGG 0.405797 7_3:+68883444 Msa1119720:three_prime_UTR
TTAACAGCAGAAACAGTTGC+AGG 0.410008 7_3:+68883471 Msa1119720:three_prime_UTR
TTTCTTCTATGAAGGTTTGA+AGG 0.411553 7_3:+68881851 Msa1119720:intron
GTAAGTAACATGAGAGAATT+GGG 0.414257 7_3:-68880875 None:intergenic
AACAAATAATAAAGATTCTC+AGG 0.415954 7_3:+68882797 Msa1119720:three_prime_UTR
TTGCCAAATGCTGGAGACTT+TGG 0.416842 7_3:-68883036 Msa1119730:CDS
AAGGCACCAAGTCAAGTTGC+AGG 0.418457 7_3:+68881143 Msa1119720:CDS
TGGGATTTAATAGTTGTTGT+TGG 0.429033 7_3:-68880856 None:intergenic
CTGCCATGAGTGTAGTTTGT+TGG 0.432672 7_3:-68880756 None:intergenic
GCCCTCTTGCTTGGATCACC+AGG 0.432947 7_3:+68883396 Msa1119720:three_prime_UTR
CTCTCTCCGCATCTCCCTCA+TGG 0.435359 7_3:-68885451 Msa1119730:CDS
GAATTCAGGGTGGATGGAAA+AGG 0.437093 7_3:+68885343 Msa1119720:three_prime_UTR
GTTGATCGGTTAAAGACCTT+GGG 0.438975 7_3:-68882896 None:intergenic
TAAAAGCTGATGATGACTTC+AGG 0.441229 7_3:-68882669 None:intergenic
TATGCAAATGCCCTCTTGCT+TGG 0.442545 7_3:+68883387 Msa1119720:three_prime_UTR
AACTTTGCAGTGGTTGATAG+AGG 0.442912 7_3:+68881194 Msa1119720:CDS
TTGTCAGAAATCGTTGTTCA+AGG 0.452015 7_3:+68882200 Msa1119720:CDS
AATGGATATGGAGAAGATGA+TGG 0.454233 7_3:-68880650 None:intergenic
ACCTCCCCTGCAACTTGACT+TGG 0.456506 7_3:-68881149 None:intergenic
CCAAATGCTGGAGACTTTGG+CGG 0.457248 7_3:-68883033 Msa1119730:CDS
GAAGAGAACGGAGAGGGAGA+TGG 0.458645 7_3:-68880724 None:intergenic
GTGGAAAGCCAGTATTCATC+AGG 0.460050 7_3:-68883200 Msa1119730:CDS
CGATCACAACGAGCCATTCT+GGG 0.462447 7_3:+68883088 Msa1119720:three_prime_UTR
GCTCAGCATGTCCGCAAGTA+AGG 0.463109 7_3:-68883298 Msa1119730:CDS
GAACTCAAGTTTAGTGAAAA+GGG 0.464874 7_3:+68882254 Msa1119720:CDS
TTAGCAAATAGGCGTGCTAT+TGG 0.465412 7_3:-68882592 None:intergenic
TCTAGACCGTTAAATCCAAC+TGG 0.470518 7_3:+68880622 Msa1119720:five_prime_UTR
AGCATCATCTTGGCAGCCAT+TGG 0.470807 7_3:-68880683 None:intergenic
GTTAACCATCTTAAGTCCAT+TGG 0.471533 7_3:+68881994 Msa1119720:CDS
AAGGGCATGGTCTATGTTAA+GGG 0.472940 7_3:+68882272 Msa1119720:CDS
AATTCAGGGTGGATGGAAAA+GGG 0.475500 7_3:+68885344 Msa1119720:three_prime_UTR
ACCTCCAAATTGTATGGTGC+AGG 0.482330 7_3:+68882952 Msa1119720:three_prime_UTR
TTACGCCAATGGACTTAAGA+TGG 0.483906 7_3:-68881999 None:intergenic
GTTCTGCGCCTGATGAATAC+TGG 0.484039 7_3:+68883192 Msa1119720:three_prime_UTR
CAAACTTGAGGACAAGTAAA+CGG 0.484302 7_3:+68883322 Msa1119720:three_prime_UTR
GAGGGAGATGGTGTGGATGT+GGG 0.487288 7_3:-68880712 None:intergenic
TGTTGATCGGTTAAAGACCT+TGG 0.487515 7_3:-68882897 None:intergenic
AAGGAGTGATGGTTCCCAGC+AGG 0.487689 7_3:+68881870 Msa1119720:CDS
GGTGGAAGAAGGCGGTGGGA+TGG 0.488335 7_3:+68885388 Msa1119720:three_prime_UTR
CACCAGGAGGAAACCGTTCA+TGG 0.490179 7_3:+68883412 Msa1119720:three_prime_UTR
AAGATGATGGGTTTACCAGT+TGG 0.490440 7_3:-68880637 None:intergenic
AACCAATTATTGCCAACATC+CGG 0.490534 7_3:-68881968 None:intergenic
AAAATGATAGTTAAAGAAGA+TGG 0.490576 7_3:+68882173 Msa1119720:CDS
GTTGGTACCTCCAAATTGTA+TGG 0.490642 7_3:+68882946 Msa1119720:three_prime_UTR
ACCATAACCGTGCCGGATGT+TGG 0.492740 7_3:+68881956 Msa1119720:CDS
AGTAGTGCCTGGCTCAATGC+TGG 0.496319 7_3:+68883239 Msa1119720:three_prime_UTR
AGATCTGCGTTGATCGGAGG+TGG 0.496546 7_3:+68885370 Msa1119720:three_prime_UTR
ATCATATACAACATGTTCAA+TGG 0.499085 7_3:+68882510 Msa1119720:three_prime_UTR
ACCAACTTATTCATTCTTGG+AGG 0.499770 7_3:-68882929 Msa1119730:CDS
TGGGCCTTAGAGAAATGTAA+TGG 0.500323 7_3:-68885674 None:intergenic
AAATGCGCCATGGACATACT+TGG 0.503500 7_3:-68882820 None:intergenic
TCCTCCAAGAATGAATAAGT+TGG 0.514284 7_3:+68882928 Msa1119720:three_prime_UTR
GACGAAGAAGAAGATGTTGA+GGG 0.514634 7_3:-68885495 None:intergenic
AGGGAGATGGTGTGGATGTG+GGG 0.515801 7_3:-68880711 None:intergenic
GGATGTACTACAAGAATGAA+TGG 0.518925 7_3:+68882328 Msa1119720:three_prime_UTR
AAGTAAGGATGTTCTTGCTA+TGG 0.519506 7_3:-68883283 Msa1119730:CDS
AAGAAAGAATTCAGGGTGGA+TGG 0.519951 7_3:+68885337 Msa1119720:three_prime_UTR
AGACGAAGAAGAAGATGTTG+AGG 0.520129 7_3:-68885496 None:intergenic
AACCATGAACGGTTTCCTCC+TGG 0.520987 7_3:-68883414 Msa1119730:CDS
CGTTGATCGGAGGTGGAAGA+AGG 0.521939 7_3:+68885377 Msa1119720:three_prime_UTR
TGAAAGGAAGAAAGAATTCA+GGG 0.522181 7_3:+68885330 Msa1119720:intron
TTTCTGCACTTGCATCAGCC+TGG 0.522655 7_3:+68881913 Msa1119720:CDS
TCGGAGGTGGAAGAAGGCGG+TGG 0.523668 7_3:+68885383 Msa1119720:three_prime_UTR
GAACGGAGAGGGAGATGGTG+TGG 0.523786 7_3:-68880719 None:intergenic
AATGCCTTCACTTACGCCAA+TGG 0.524915 7_3:-68882010 None:intergenic
GAGGAAAACAAGTTGTTGAT+CGG 0.524976 7_3:-68882910 Msa1119730:CDS
AAATAAGCTATGTTTCGAAA+AGG 0.525677 7_3:-68882295 None:intergenic
GGGCCTTAGAGAAATGTAAT+GGG 0.529648 7_3:-68885673 None:intergenic
GAAGTGGAAGAGAACGGAGA+GGG 0.529733 7_3:-68880730 None:intergenic
CGAATATCAAAACTTTCAGC+AGG 0.533525 7_3:-68882418 None:intergenic
TGGAGTGAAGTGGAAGAGAA+CGG 0.534314 7_3:-68880736 None:intergenic
ATGAAGGTTTGAAGGAGTGA+TGG 0.536342 7_3:+68881859 Msa1119720:intron
CCAGAATGGCTCGTTGTGAT+CGG 0.536344 7_3:-68883087 Msa1119730:CDS
GGGGTTCTTAGAGAGGAAAG+AGG 0.541618 7_3:+68885409 Msa1119720:three_prime_UTR
ATCGGTGTTTGCACACATCT+GGG 0.542075 7_3:-68883069 Msa1119730:CDS
TGGGGACAATAGCATCATCT+TGG 0.542369 7_3:-68880693 None:intergenic
TGTAGTTTGTTGGAGTGAAG+TGG 0.546339 7_3:-68880746 None:intergenic
GATCTGTCCAGCATTGAGCC+AGG 0.548945 7_3:-68883246 Msa1119730:CDS
GCACTACTGTCACTGTTAAG+TGG 0.549316 7_3:-68883224 Msa1119730:CDS
ATGGATATGGAGAAGATGAT+GGG 0.549721 7_3:-68880649 None:intergenic
ATGTTACTTACAGAGACTAC+TGG 0.550188 7_3:+68880887 Msa1119720:CDS
CGGAGGTGGAAGAAGGCGGT+GGG 0.553191 7_3:+68885384 Msa1119720:three_prime_UTR
TATTTCTGGCAGAATTAGGA+AGG 0.553507 7_3:-68882977 Msa1119730:CDS
AGGAGTGATGGTTCCCAGCA+GGG 0.555627 7_3:+68881871 Msa1119720:CDS
ACAATGTTCTAAAGTGAACT+AGG 0.557712 7_3:-68882450 None:intergenic
CTCTCTCAGAATCTTGCTGA+GGG 0.558977 7_3:+68883118 Msa1119720:three_prime_UTR
GCACAAGGGAAACACTTGCC+AGG 0.561065 7_3:-68881931 None:intergenic
ATGCTGGAGACTTTGGCGGA+TGG 0.561425 7_3:-68883029 Msa1119730:CDS
GGGGTCAGATCTGCGTTGAT+CGG 0.562035 7_3:+68885364 Msa1119720:three_prime_UTR
ACAAGTCGAGCAAATGAGAA+AGG 0.564418 7_3:+68882232 Msa1119720:CDS
TTGGCAAACAGTGTTGATGT+TGG 0.567703 7_3:-68883153 Msa1119730:CDS
TACTCGTAATAACTTTGCAG+TGG 0.569315 7_3:+68881184 Msa1119720:CDS
GCACGGTTATGGTGAGCACA+AGG 0.570393 7_3:-68881946 None:intergenic
ACTCTCTCAGAATCTTGCTG+AGG 0.573430 7_3:+68883117 Msa1119720:three_prime_UTR
ACCAAGTCAAGTTGCAGGGG+AGG 0.579868 7_3:+68881148 Msa1119720:CDS
GGAGTGATGGTTCCCAGCAG+GGG 0.585564 7_3:+68881872 Msa1119720:CDS
AGGCACCAAGTCAAGTTGCA+GGG 0.588262 7_3:+68881144 Msa1119720:CDS
TTAACAGTGACAGTAGTGCC+TGG 0.588903 7_3:+68883228 Msa1119720:three_prime_UTR
TGTGCTCACCATAACCGTGC+CGG 0.593329 7_3:+68881949 Msa1119720:CDS
GAATTCAGCACTCTCGTGAA+GGG 0.593669 7_3:-68880822 None:intergenic
ACTGTCACTGTTAAGTGGCG+TGG 0.593737 7_3:-68883219 Msa1119730:CDS
CTTAGAGAGGAAAGAGGATG+CGG 0.594072 7_3:+68885415 Msa1119720:three_prime_UTR
TCCATTCTCTGCAAAACCAA+TGG 0.596591 7_3:+68880667 Msa1119720:exon
CAAACGTTCTGTCAAATCCA+AGG 0.596958 7_3:+68880982 Msa1119720:CDS
AATGACGCAGCAGTCAAGCA+TGG 0.597254 7_3:-68885631 None:intergenic
TCATAATGAGATCCATGACA+TGG 0.597841 7_3:+68883000 Msa1119720:three_prime_UTR
TTCCACTAGTGAGCAGCCCA+AGG 0.599328 7_3:+68882880 Msa1119720:three_prime_UTR
GTCAGATCTGCGTTGATCGG+AGG 0.599812 7_3:+68885367 Msa1119720:three_prime_UTR
ACTCCAACAAACTACACTCA+TGG 0.600149 7_3:+68880753 Msa1119720:CDS
GTGGGATGGGGTTCTTAGAG+AGG 0.600373 7_3:+68885402 Msa1119720:three_prime_UTR
ATGATGAACACAACCATGAA+CGG 0.601838 7_3:-68883425 Msa1119730:CDS
TTGAACAACGATTTCTGACA+AGG 0.602980 7_3:-68882198 None:intergenic
TCTCAGGCCAAGTATGTCCA+TGG 0.606329 7_3:+68882813 Msa1119720:three_prime_UTR
TGAATTCAGCACTCTCGTGA+AGG 0.606564 7_3:-68880823 None:intergenic
AAAGTCTCCAGCATTTGGCA+AGG 0.607108 7_3:+68883038 Msa1119720:three_prime_UTR
AGTGACTCAGTAGCAAAACC+TGG 0.607734 7_3:+68883531 Msa1119720:three_prime_UTR
ACGCAGCAGTCAAGCATGGA+GGG 0.608771 7_3:-68885627 None:intergenic
ACTTTGTCCTAACAGGCGGA+AGG 0.609145 7_3:-68883365 Msa1119730:CDS
TTGATGAGAGACCAAAGACC+AGG 0.611561 7_3:-68880962 None:intergenic
CAAGTTTAGTGAAAAGGGCA+TGG 0.612881 7_3:+68882259 Msa1119720:CDS
AGAGAGTCAAGAACCCAGAA+TGG 0.614301 7_3:-68883101 Msa1119730:CDS
TGAAGTGGAAGAGAACGGAG+AGG 0.617407 7_3:-68880731 None:intergenic
ACCTGCACCATACAATTTGG+AGG 0.619569 7_3:-68882953 Msa1119730:CDS
GATAATGTCGAAATGCGCCA+TGG 0.622811 7_3:-68882830 None:intergenic
CTGGACTCGAGCATCCAGAA+AGG 0.624164 7_3:+68882136 Msa1119720:CDS
ACATGCTGAGCACAAACTTG+AGG 0.627184 7_3:+68883310 Msa1119720:three_prime_UTR
ATTATTGCCAACATCCGGCA+CGG 0.632668 7_3:-68881963 None:intergenic
ATTCAGGGTGGATGGAAAAG+GGG 0.632839 7_3:+68885345 Msa1119720:three_prime_UTR
AGCAAGAACATCCTTACTTG+CGG 0.635054 7_3:+68883287 Msa1119720:three_prime_UTR
AAGTCTCCAGCATTTGGCAA+GGG 0.635128 7_3:+68883039 Msa1119720:three_prime_UTR
GGCACCAAGTCAAGTTGCAG+GGG 0.636681 7_3:+68881145 Msa1119720:CDS
ATTTCTGGCAGAATTAGGAA+GGG 0.638657 7_3:-68882976 Msa1119730:CDS
GAGTGATGGTTCCCAGCAGG+GGG 0.640157 7_3:+68881873 Msa1119720:CDS
AGACCTCCATGAGGGAGATG+CGG 0.642073 7_3:+68885445 Msa1119720:three_prime_UTR
CTCCTGGTGATCCAAGCAAG+AGG 0.642258 7_3:-68883398 Msa1119730:CDS
GCGTGGTAAGACCTCCATGA+GGG 0.642786 7_3:+68885437 Msa1119720:three_prime_UTR
TGATCGGAGGTGGAAGAAGG+CGG 0.650837 7_3:+68885380 Msa1119720:three_prime_UTR
AAGCAGCCACGGCTAAACAC+AGG 0.652533 7_3:+68882363 Msa1119720:three_prime_UTR
TCCTGGTGATCCAAGCAAGA+GGG 0.654973 7_3:-68883397 Msa1119730:CDS
CATAATGAGATCCATGACAT+GGG 0.657346 7_3:+68883001 Msa1119720:three_prime_UTR
GCATACTTTGTCCTAACAGG+CGG 0.658552 7_3:-68883369 Msa1119730:CDS
GACAAGTAAACGGATCAAAG+AGG 0.665826 7_3:+68883332 Msa1119720:three_prime_UTR
CACGGTTATGGTGAGCACAA+GGG 0.668400 7_3:-68881945 None:intergenic
CTCTTGCTTGGATCACCAGG+AGG 0.672619 7_3:+68883399 Msa1119720:three_prime_UTR
TAAAGTGAACTAGGTGCCAG+AGG 0.674894 7_3:-68882441 None:intergenic
GACGCAGCAGTCAAGCATGG+AGG 0.677668 7_3:-68885628 None:intergenic
TCTCCGCATCTCCCTCATGG+AGG 0.691735 7_3:-68885448 Msa1119730:CDS
CATATGCCTGTGTTTAGCCG+TGG 0.700828 7_3:-68882369 None:intergenic
TGTACTACAAGAATGAATGG+AGG 0.720850 7_3:+68882331 Msa1119720:three_prime_UTR
AGAGGAAAGAGGATGCGGCG+TGG 0.730375 7_3:+68885420 Msa1119720:three_prime_UTR
GGCGTGGTAAGACCTCCATG+AGG 0.755671 7_3:+68885436 Msa1119720:three_prime_UTR
AAGGAAGAAAGAATTCAGGG+TGG 0.772377 7_3:+68885333 Msa1119720:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAAATTAAATCAATTAA+TGG + chr7_3:68883558-68883577 Msa1119720:intron 10.0%
!! TATAAAACATTTAACAAAAT+AGG + chr7_3:68884779-68884798 Msa1119720:intron 10.0%
!! TAATGACATTAATAACTAAA+TGG - chr7_3:68881730-68881749 None:intergenic 15.0%
!! ATCATATCATAAATTACATT+TGG - chr7_3:68882626-68882645 None:intergenic 15.0%
!!! CCAAAATATTTTTGATTATT+TGG - chr7_3:68882855-68882874 None:intergenic 15.0%
!!! CCAAATAATCAAAAATATTT+TGG + chr7_3:68882852-68882871 Msa1119720:three_prime_UTR 15.0%
!! TCAATTTATATTATCTAACT+AGG - chr7_3:68883591-68883610 Msa1119730:intron 15.0%
!!! TTTAGTTGTTACTTTTTTAT+GGG - chr7_3:68884474-68884493 Msa1119730:intron 15.0%
!!! TTTTAGTTGTTACTTTTTTA+TGG - chr7_3:68884475-68884494 Msa1119730:intron 15.0%
!!! TAATGATAAAATGTTTTTTG+TGG - chr7_3:68884638-68884657 Msa1119730:intron 15.0%
!!! TTTGTTAAATGTTTTATAGA+TGG - chr7_3:68884777-68884796 Msa1119730:intron 15.0%
!!! TCAGCAAAAATATTTTTTTT+AGG + chr7_3:68884871-68884890 Msa1119720:intron 15.0%
!! TTCAATGAATTTGATTATTT+GGG - chr7_3:68885132-68885151 Msa1119730:intron 15.0%
!! TTTCAATGAATTTGATTATT+TGG - chr7_3:68885133-68885152 Msa1119730:intron 15.0%
!! ACAATAACAATAAAACAAAG+TGG - chr7_3:68881039-68881058 None:intergenic 20.0%
!!! TCTTTTACAACATTAAAGAT+TGG - chr7_3:68881641-68881660 None:intergenic 20.0%
!! ATATGTTAACACCAAATAAT+GGG - chr7_3:68881691-68881710 None:intergenic 20.0%
!! ATTAATTAAGAGGCAAAAAT+AGG - chr7_3:68881789-68881808 None:intergenic 20.0%
!! AAAATGATAGTTAAAGAAGA+TGG + chr7_3:68882173-68882192 Msa1119720:CDS 20.0%
!! AAATTGTAAACAAAAAAGTC+AGG + chr7_3:68882706-68882725 Msa1119720:three_prime_UTR 20.0%
!! AACAAATAATAAAGATTCTC+AGG + chr7_3:68882797-68882816 Msa1119720:three_prime_UTR 20.0%
!! AAGATAGCAATTTAGTATTA+TGG + chr7_3:68884072-68884091 Msa1119720:intron 20.0%
!!! AATAGTTTTGCTATTCATTT+AGG - chr7_3:68884159-68884178 Msa1119730:intron 20.0%
!!! ACATAAATTACTTTTTTCCA+GGG - chr7_3:68884410-68884429 Msa1119730:intron 20.0%
!!! TACATAAATTACTTTTTTCC+AGG - chr7_3:68884411-68884430 Msa1119730:intron 20.0%
!! TTAGAAAACAACAGTTAATA+AGG + chr7_3:68884440-68884459 Msa1119720:intron 20.0%
!! ATTATGAATGAGGTATAATT+CGG - chr7_3:68884600-68884619 Msa1119730:intron 20.0%
!!! ATTTTAAACCATTATGAATG+AGG - chr7_3:68884610-68884629 Msa1119730:intron 20.0%
!! AAAACATTTAACAAAATAGG+TGG + chr7_3:68884782-68884801 Msa1119720:intron 20.0%
!! TCAATGAATTTGATTATTTG+GGG - chr7_3:68885131-68885150 Msa1119730:intron 20.0%
!!! ATTTGATTCGTTTTATGTTA+GGG - chr7_3:68885221-68885240 Msa1119730:intron 20.0%
!!! GATTTTTAGAATCGAAAAAA+GGG + chr7_3:68885585-68885604 Msa1119720:three_prime_UTR 20.0%
!!! ATTTTTAGAATCGAAAAAAG+GGG + chr7_3:68885586-68885605 Msa1119720:three_prime_UTR 20.0%
! AATGAATGAATGAATTACCT+TGG - chr7_3:68881002-68881021 None:intergenic 25.0%
!! AAGAAGACTTTTATAGATGA+AGG + chr7_3:68881113-68881132 Msa1119720:CDS 25.0%
! CAATTAAAGAGAGAATGTAA+TGG - chr7_3:68881240-68881259 None:intergenic 25.0%
! AATGATCAATAGAAGATGTT+TGG + chr7_3:68881278-68881297 Msa1119720:intron 25.0%
!!! TACTCATTGCATTTAATTTG+TGG - chr7_3:68881307-68881326 None:intergenic 25.0%
! TCATTAAGTTACTAGAATGA+GGG - chr7_3:68881519-68881538 None:intergenic 25.0%
!! AATCGAATTTTTACGTTCTT+TGG + chr7_3:68881555-68881574 Msa1119720:intron 25.0%
!!! ACATTAAAGATTGGCTTAAT+TGG - chr7_3:68881632-68881651 None:intergenic 25.0%
!! ACATAGAGACTTTTGATAAA+TGG - chr7_3:68881665-68881684 None:intergenic 25.0%
! GATATGTTAACACCAAATAA+TGG - chr7_3:68881692-68881711 None:intergenic 25.0%
! TGACGTAATGATTAATTAAG+AGG - chr7_3:68881799-68881818 None:intergenic 25.0%
!!! TTTTTCTGTTTCTTCTATGA+AGG + chr7_3:68881843-68881862 Msa1119720:intron 25.0%
! AAATAAGCTATGTTTCGAAA+AGG - chr7_3:68882298-68882317 None:intergenic 25.0%
! ATCATATACAACATGTTCAA+TGG + chr7_3:68882510-68882529 Msa1119720:three_prime_UTR 25.0%
!! TCATATACAATCTTTGAAGA+TGG + chr7_3:68883444-68883463 Msa1119720:three_prime_UTR 25.0%
! TTGCATATTATCTTACTTTG+GGG - chr7_3:68883692-68883711 Msa1119730:intron 25.0%
! GTTGCATATTATCTTACTTT+GGG - chr7_3:68883693-68883712 Msa1119730:intron 25.0%
! AGTTGCATATTATCTTACTT+TGG - chr7_3:68883694-68883713 Msa1119730:intron 25.0%
! GATCTATTAAGTTTGAATAG+AGG + chr7_3:68883738-68883757 Msa1119720:intron 25.0%
! AATTATTCTATGTGTAGGTA+AGG - chr7_3:68883783-68883802 Msa1119730:intron 25.0%
! GCAATAATTATTCTATGTGT+AGG - chr7_3:68883788-68883807 Msa1119730:intron 25.0%
!! TATCTATCTGTTCCATTTTA+TGG - chr7_3:68883862-68883881 Msa1119730:intron 25.0%
!!! TGACCCAAAATACTTTTTTA+GGG - chr7_3:68883937-68883956 Msa1119730:intron 25.0%
!!! TTGACCCAAAATACTTTTTT+AGG - chr7_3:68883938-68883957 Msa1119730:intron 25.0%
! TGGTTATTGAATTGTTTAGT+TGG - chr7_3:68883962-68883981 Msa1119730:intron 25.0%
! TAAAAAACTGCATGTTTAGT+TGG - chr7_3:68883982-68884001 Msa1119730:intron 25.0%
! AAAAGACATGAATATAGGAA+TGG - chr7_3:68884213-68884232 Msa1119730:intron 25.0%
!! TCCTATATTCATGTCTTTTA+AGG + chr7_3:68884214-68884233 Msa1119720:intron 25.0%
! ACCTTAAAAGACATGAATAT+AGG - chr7_3:68884218-68884237 Msa1119730:intron 25.0%
! GAATTATACCTCATTCATAA+TGG + chr7_3:68884599-68884618 Msa1119720:intron 25.0%
! ATTAAACCAGAGTTTCAAAA+AGG + chr7_3:68884654-68884673 Msa1119720:intron 25.0%
!!! ATGTTAATTTTTGTGCTGTT+TGG - chr7_3:68884916-68884935 Msa1119730:intron 25.0%
! ATATAAACATCCCAGAATAT+TGG + chr7_3:68885055-68885074 Msa1119720:intron 25.0%
! TGGGGATAATTTATTTGATT+GGG - chr7_3:68885113-68885132 Msa1119730:intron 25.0%
! TTGGGGATAATTTATTTGAT+TGG - chr7_3:68885114-68885133 Msa1119730:intron 25.0%
!!! GATTTGATTCGTTTTATGTT+AGG - chr7_3:68885222-68885241 Msa1119730:intron 25.0%
!!! CGATTTTTAGAATCGAAAAA+AGG + chr7_3:68885584-68885603 Msa1119720:three_prime_UTR 25.0%
!!! CGTCATTTTTCTGATTTTTT+GGG + chr7_3:68885647-68885666 Msa1119720:three_prime_UTR 25.0%
!!! TCTTTGGTTTTGGATTTTGA+AGG - chr7_3:68880790-68880809 None:intergenic 30.0%
!! AAACGAAGTTTCTTTGGTTT+TGG - chr7_3:68880800-68880819 None:intergenic 30.0%
TGGGATTTAATAGTTGTTGT+TGG - chr7_3:68880859-68880878 None:intergenic 30.0%
GTAAGTAACATGAGAGAATT+GGG - chr7_3:68880878-68880897 None:intergenic 30.0%
TGTAAGTAACATGAGAGAAT+TGG - chr7_3:68880879-68880898 None:intergenic 30.0%
GCTAGTTATTATACTTCTCT+TGG + chr7_3:68880920-68880939 Msa1119720:CDS 30.0%
! TTGACAATTTCGTGCTTTTA+TGG + chr7_3:68881076-68881095 Msa1119720:intron 30.0%
! AAGACTTTTATAGATGAAGG+TGG + chr7_3:68881116-68881135 Msa1119720:CDS 30.0%
TATAGATGAAGGTGGAAATA+AGG + chr7_3:68881124-68881143 Msa1119720:CDS 30.0%
TATTGATCATTGCAAAAGCA+AGG - chr7_3:68881269-68881288 None:intergenic 30.0%
TTGCTTATAATGAAGTCTAG+AGG + chr7_3:68881338-68881357 Msa1119720:intron 30.0%
TGCTTATAATGAAGTCTAGA+GGG + chr7_3:68881339-68881358 Msa1119720:intron 30.0%
GATTTCACCAATGCTTAAAA+TGG - chr7_3:68881369-68881388 None:intergenic 30.0%
CAAGTTAAATGTTCTAACCA+TGG + chr7_3:68881392-68881411 Msa1119720:intron 30.0%
!!! GAATGAGGGTTTTTTGAATT+CGG - chr7_3:68881505-68881524 None:intergenic 30.0%
GTCATTAAGTTACTAGAATG+AGG - chr7_3:68881520-68881539 None:intergenic 30.0%
TACTAACCAAATCTTTGCAT+AGG + chr7_3:68881588-68881607 Msa1119720:intron 30.0%
TTTCTTCTATGAAGGTTTGA+AGG + chr7_3:68881851-68881870 Msa1119720:intron 30.0%
!! ATGTTGGCAATAATTGGTTT+TGG + chr7_3:68881972-68881991 Msa1119720:CDS 30.0%
GAACTCAAGTTTAGTGAAAA+GGG + chr7_3:68882254-68882273 Msa1119720:CDS 30.0%
!!! ATAGCTTATTTTACCAGAAC+AGG + chr7_3:68882307-68882326 Msa1119720:exon 30.0%
!! ACAATGTTCTAAAGTGAACT+AGG - chr7_3:68882453-68882472 None:intergenic 30.0%
!! CATTGTGATTCTTACTTTTG+AGG + chr7_3:68882467-68882486 Msa1119720:three_prime_UTR 30.0%
!! ATGATATTTCTGGCAGAATT+AGG - chr7_3:68882984-68883003 Msa1119730:CDS 30.0%
GGATCTCATTATGATATTTC+TGG - chr7_3:68882994-68883013 Msa1119730:CDS 30.0%
!!! TAATGCTGTTTTCTTTTGTG+TGG + chr7_3:68883505-68883524 Msa1119720:three_prime_UTR 30.0%
!! GATTTAATTTGATTGCATCC+AGG - chr7_3:68883552-68883571 Msa1119730:intron 30.0%
TGCATATTATCTTACTTTGG+GGG - chr7_3:68883691-68883710 Msa1119730:intron 30.0%
! TAAGGCTGATCTATTCTTTT+GGG - chr7_3:68883765-68883784 Msa1119730:intron 30.0%
!!! TCCACCCTAAAAAAGTATTT+TGG + chr7_3:68883930-68883949 Msa1119720:intron 30.0%
!!! CCACCCTAAAAAAGTATTTT+GGG + chr7_3:68883931-68883950 Msa1119720:intron 30.0%
TAAGTGTGAAGTAACTGATA+AGG + chr7_3:68884314-68884333 Msa1119720:intron 30.0%
AAGTGTGAAGTAACTGATAA+GGG + chr7_3:68884315-68884334 Msa1119720:intron 30.0%
! TAATTAGAAACAGTTTTCCC+TGG + chr7_3:68884390-68884409 Msa1119720:intron 30.0%
TGACTATATCAAAACTGGAA+GGG - chr7_3:68884537-68884556 Msa1119730:intron 30.0%
ATGACTATATCAAAACTGGA+AGG - chr7_3:68884538-68884557 Msa1119730:intron 30.0%
!! TTCCAGTTTTGATATAGTCA+TGG + chr7_3:68884537-68884556 Msa1119720:intron 30.0%
TTCCATGACTATATCAAAAC+TGG - chr7_3:68884542-68884561 Msa1119730:intron 30.0%
AAAAGTTTCTTGTATCTGCA+CGG + chr7_3:68884705-68884724 Msa1119720:intron 30.0%
TCGTGATTCTCTACAATAAA+AGG + chr7_3:68884728-68884747 Msa1119720:intron 30.0%
!!! TTATAGATGGTTTTGATTCG+TGG - chr7_3:68884764-68884783 Msa1119730:intron 30.0%
! TATATGTCTTTTTCCGTTGT+GGG - chr7_3:68884838-68884857 Msa1119730:intron 30.0%
! ATATATGTCTTTTTCCGTTG+TGG - chr7_3:68884839-68884858 Msa1119730:intron 30.0%
GCACAAAAATTAACATGCTT+CGG + chr7_3:68884920-68884939 Msa1119720:intron 30.0%
! ATCTTCTATTGTTTTCCTTG+TGG - chr7_3:68884971-68884990 Msa1119730:intron 30.0%
! GTTTGAAGTAGAATTGAAGA+TGG - chr7_3:68885008-68885027 Msa1119730:intron 30.0%
GGATTTGATTCCAATATTCT+GGG - chr7_3:68885068-68885087 Msa1119730:intron 30.0%
ATGTTTATTGCTGTGTATGA+AGG - chr7_3:68885161-68885180 Msa1119730:intron 30.0%
!!! TTCCTGTTATTTTACTATGG+CGG - chr7_3:68885292-68885311 Msa1119730:intron 30.0%
!!! CCTTTCCTGTTATTTTACTA+TGG - chr7_3:68885295-68885314 Msa1119730:intron 30.0%
CCATAGTAAAATAACAGGAA+AGG + chr7_3:68885292-68885311 Msa1119720:intron 30.0%
TGAAAGGAAGAAAGAATTCA+GGG + chr7_3:68885330-68885349 Msa1119720:intron 30.0%
!!! GCGTCATTTTTCTGATTTTT+TGG + chr7_3:68885646-68885665 Msa1119720:three_prime_UTR 30.0%
GGTTTACCAGTTGGATTTAA+CGG - chr7_3:68880631-68880650 None:intergenic 35.0%
ATGGATATGGAGAAGATGAT+GGG - chr7_3:68880652-68880671 None:intergenic 35.0%
AATGGATATGGAGAAGATGA+TGG - chr7_3:68880653-68880672 None:intergenic 35.0%
!!! TTGGTTTTGGATTTTGAAGG+TGG - chr7_3:68880787-68880806 None:intergenic 35.0%
AGGGATAAACGAAGTTTCTT+TGG - chr7_3:68880806-68880825 None:intergenic 35.0%
! ATGTTACTTACAGAGACTAC+TGG + chr7_3:68880887-68880906 Msa1119720:CDS 35.0%
!! CTTTTTGTTATCTCTGTTCC+TGG + chr7_3:68880944-68880963 Msa1119720:CDS 35.0%
TACTCGTAATAACTTTGCAG+TGG + chr7_3:68881184-68881203 Msa1119720:CDS 35.0%
TGTAATGGTTACTTACGTGA+TGG - chr7_3:68881225-68881244 None:intergenic 35.0%
! GTGATCACAGTTTAAAACCA+TGG - chr7_3:68881412-68881431 None:intergenic 35.0%
CTTAATTGGTCATAGCAAAC+TGG - chr7_3:68881618-68881637 None:intergenic 35.0%
CTCTATGTCTACCCATTATT+TGG + chr7_3:68881677-68881696 Msa1119720:intron 35.0%
! TGGTGTTAACATATCGAGTT+AGG + chr7_3:68881697-68881716 Msa1119720:intron 35.0%
TAAGAGGCAAAAATAGGAGA+GGG - chr7_3:68881783-68881802 None:intergenic 35.0%
TTAAGAGGCAAAAATAGGAG+AGG - chr7_3:68881784-68881803 None:intergenic 35.0%
AACCAATTATTGCCAACATC+CGG - chr7_3:68881971-68881990 None:intergenic 35.0%
GTTAACCATCTTAAGTCCAT+TGG + chr7_3:68881994-68882013 Msa1119720:CDS 35.0%
TGCCATGAATATTTATGCAG+AGG + chr7_3:68882104-68882123 Msa1119720:intron 35.0%
CTCCTCTGCATAAATATTCA+TGG - chr7_3:68882109-68882128 None:intergenic 35.0%
TTGAACAACGATTTCTGACA+AGG - chr7_3:68882201-68882220 None:intergenic 35.0%
TTGTCAGAAATCGTTGTTCA+AGG + chr7_3:68882200-68882219 Msa1119720:CDS 35.0%
GGAACTCAAGTTTAGTGAAA+AGG + chr7_3:68882253-68882272 Msa1119720:CDS 35.0%
GGATGTACTACAAGAATGAA+TGG + chr7_3:68882328-68882347 Msa1119720:three_prime_UTR 35.0%
TGTACTACAAGAATGAATGG+AGG + chr7_3:68882331-68882350 Msa1119720:three_prime_UTR 35.0%
CGAATATCAAAACTTTCAGC+AGG - chr7_3:68882421-68882440 None:intergenic 35.0%
!! AAAGTTTTGATATTCGCCTC+TGG + chr7_3:68882425-68882444 Msa1119720:three_prime_UTR 35.0%
TGGAAATCTGCTTAGCAAAT+AGG - chr7_3:68882606-68882625 None:intergenic 35.0%
! TAAAAGCTGATGATGACTTC+AGG - chr7_3:68882672-68882691 None:intergenic 35.0%
CGCCAAACATACTTGAAATT+CGG + chr7_3:68882748-68882767 Msa1119720:three_prime_UTR 35.0%
! CTCCGAATTTCAAGTATGTT+TGG - chr7_3:68882753-68882772 None:intergenic 35.0%
GAGGAAAACAAGTTGTTGAT+CGG - chr7_3:68882913-68882932 Msa1119730:CDS 35.0%
TCCTCCAAGAATGAATAAGT+TGG + chr7_3:68882928-68882947 Msa1119720:three_prime_UTR 35.0%
ACCAACTTATTCATTCTTGG+AGG - chr7_3:68882932-68882951 Msa1119730:CDS 35.0%
GGTACCAACTTATTCATTCT+TGG - chr7_3:68882935-68882954 Msa1119730:CDS 35.0%
!! ATTTCTGGCAGAATTAGGAA+GGG - chr7_3:68882979-68882998 Msa1119730:CDS 35.0%
!! TATTTCTGGCAGAATTAGGA+AGG - chr7_3:68882980-68882999 Msa1119730:CDS 35.0%
TCATAATGAGATCCATGACA+TGG + chr7_3:68883000-68883019 Msa1119720:three_prime_UTR 35.0%
CATAATGAGATCCATGACAT+GGG + chr7_3:68883001-68883020 Msa1119720:three_prime_UTR 35.0%
AACAGATGACGATGTGAAAT+TGG - chr7_3:68883175-68883194 Msa1119730:CDS 35.0%
AAGTAAGGATGTTCTTGCTA+TGG - chr7_3:68883286-68883305 Msa1119730:CDS 35.0%
CAAACTTGAGGACAAGTAAA+CGG + chr7_3:68883322-68883341 Msa1119720:three_prime_UTR 35.0%
TTTGCATACTTTGTCCTAAC+AGG - chr7_3:68883375-68883394 Msa1119730:CDS 35.0%
ATGATGAACACAACCATGAA+CGG - chr7_3:68883428-68883447 Msa1119730:CDS 35.0%
! ATTATCTTACTTTGGGGGAT+TGG - chr7_3:68883686-68883705 Msa1119730:intron 35.0%
! GTAAGGCTGATCTATTCTTT+TGG - chr7_3:68883766-68883785 Msa1119730:intron 35.0%
ACCAGAGGTAAACCATAAAA+TGG + chr7_3:68883847-68883866 Msa1119720:intron 35.0%
! TCCATTTTATGGTTTACCTC+TGG - chr7_3:68883851-68883870 Msa1119730:intron 35.0%
!!! CCCAAAATACTTTTTTAGGG+TGG - chr7_3:68883934-68883953 Msa1119730:intron 35.0%
GACATGAATATAGGAATGGA+GGG - chr7_3:68884209-68884228 Msa1119730:intron 35.0%
AGACATGAATATAGGAATGG+AGG - chr7_3:68884210-68884229 Msa1119730:intron 35.0%
CACACTTATGTACCAATGAA+AGG - chr7_3:68884302-68884321 Msa1119730:intron 35.0%
! TCCTTATTTACAAGTCCACA+AGG + chr7_3:68884953-68884972 Msa1119720:intron 35.0%
TCCTTGTGGACTTGTAAATA+AGG - chr7_3:68884957-68884976 Msa1119730:intron 35.0%
GGGATTTGATTCCAATATTC+TGG - chr7_3:68885069-68885088 Msa1119730:intron 35.0%
GAATTCTTTCTTCCTTTCAG+AGG - chr7_3:68885329-68885348 Msa1119730:CDS 35.0%
CTGAAAGGAAGAAAGAATTC+AGG + chr7_3:68885329-68885348 Msa1119720:intron 35.0%
CTTCCCATTACATTTCTCTA+AGG + chr7_3:68885670-68885689 Msa1119720:three_prime_UTR 35.0%
TCTAGACCGTTAAATCCAAC+TGG + chr7_3:68880622-68880641 Msa1119720:five_prime_UTR 40.0%
!! AAGATGATGGGTTTACCAGT+TGG - chr7_3:68880640-68880659 None:intergenic 40.0%
! GGTTTTGCAGAGAATGGATA+TGG - chr7_3:68880665-68880684 None:intergenic 40.0%
TCCATTCTCTGCAAAACCAA+TGG + chr7_3:68880667-68880686 Msa1119720:exon 40.0%
!! TGTAGTTTGTTGGAGTGAAG+TGG - chr7_3:68880749-68880768 None:intergenic 40.0%
ACTCCAACAAACTACACTCA+TGG + chr7_3:68880753-68880772 Msa1119720:CDS 40.0%
!! GTTTTGGATTTTGAAGGTGG+TGG - chr7_3:68880784-68880803 None:intergenic 40.0%
! AGAGACTACTGGTTACTCTT+TGG + chr7_3:68880898-68880917 Msa1119720:CDS 40.0%
! TTATCTCTGTTCCTGGTCTT+TGG + chr7_3:68880951-68880970 Msa1119720:CDS 40.0%
CAAACGTTCTGTCAAATCCA+AGG + chr7_3:68880982-68881001 Msa1119720:CDS 40.0%
!! AACTTTGCAGTGGTTGATAG+AGG + chr7_3:68881194-68881213 Msa1119720:CDS 40.0%
!!! GGGAGTACCATTTTAAGCAT+TGG + chr7_3:68881359-68881378 Msa1119720:intron 40.0%
TGTTGCAATTGTTGATACCG+TGG + chr7_3:68881437-68881456 Msa1119720:intron 40.0%
GCAAAAATAGGAGAGGGATA+AGG - chr7_3:68881777-68881796 None:intergenic 40.0%
ATGAAGGTTTGAAGGAGTGA+TGG + chr7_3:68881859-68881878 Msa1119720:intron 40.0%
! TTACGCCAATGGACTTAAGA+TGG - chr7_3:68882002-68882021 None:intergenic 40.0%
TATGCAGAGGAGCTTATTAC+TGG + chr7_3:68882117-68882136 Msa1119720:intron 40.0%
!! CACTTTAACTTGCTCCTTTC+TGG - chr7_3:68882153-68882172 None:intergenic 40.0%
! TTCTCATTTGCTCGACTTGT+TGG - chr7_3:68882232-68882251 None:intergenic 40.0%
ACAAGTCGAGCAAATGAGAA+AGG + chr7_3:68882232-68882251 Msa1119720:CDS 40.0%
CAAGTTTAGTGAAAAGGGCA+TGG + chr7_3:68882259-68882278 Msa1119720:CDS 40.0%
! AAAGGGCATGGTCTATGTTA+AGG + chr7_3:68882271-68882290 Msa1119720:CDS 40.0%
! AAGGGCATGGTCTATGTTAA+GGG + chr7_3:68882272-68882291 Msa1119720:CDS 40.0%
TCTTGTAGTACATCCTGTTC+TGG - chr7_3:68882323-68882342 None:intergenic 40.0%
CAACATGTTCAATGGCTACT+TGG + chr7_3:68882518-68882537 Msa1119720:three_prime_UTR 40.0%
TTAGCAAATAGGCGTGCTAT+TGG - chr7_3:68882595-68882614 None:intergenic 40.0%
GTTGATCGGTTAAAGACCTT+GGG - chr7_3:68882899-68882918 None:intergenic 40.0%
TGTTGATCGGTTAAAGACCT+TGG - chr7_3:68882900-68882919 None:intergenic 40.0%
GTTGGTACCTCCAAATTGTA+TGG + chr7_3:68882946-68882965 Msa1119720:three_prime_UTR 40.0%
!! TTGGCAAACAGTGTTGATGT+TGG - chr7_3:68883156-68883175 Msa1119730:CDS 40.0%
AGCAAGAACATCCTTACTTG+CGG + chr7_3:68883287-68883306 Msa1119720:three_prime_UTR 40.0%
GACAAGTAAACGGATCAAAG+AGG + chr7_3:68883332-68883351 Msa1119720:three_prime_UTR 40.0%
TTAACAGCAGAAACAGTTGC+AGG + chr7_3:68883471-68883490 Msa1119720:three_prime_UTR 40.0%
GAAACAGTTGCAGGAATTTC+AGG + chr7_3:68883480-68883499 Msa1119720:three_prime_UTR 40.0%
! TTGGGTTGTGTGTTAGTATG+AGG - chr7_3:68883630-68883649 Msa1119730:intron 40.0%
TTGTGCGTATGCTATTCGTT+GGG - chr7_3:68883648-68883667 Msa1119730:intron 40.0%
ATTGTGCGTATGCTATTCGT+TGG - chr7_3:68883649-68883668 Msa1119730:intron 40.0%
GATCAAATGATACAGACCAG+AGG + chr7_3:68883832-68883851 Msa1119720:intron 40.0%
CATACTCTCTCACCTTTCAT+TGG + chr7_3:68884287-68884306 Msa1119720:intron 40.0%
ACCAGAGTTTCAAAAAGGTG+AGG + chr7_3:68884659-68884678 Msa1119720:intron 40.0%
CCAGAGTTTCAAAAAGGTGA+GGG + chr7_3:68884660-68884679 Msa1119720:intron 40.0%
CACCGCCATAGTAAAATAAC+AGG + chr7_3:68885287-68885306 Msa1119720:intron 40.0%
GAAAAGCAGTTACCTCTGAA+AGG + chr7_3:68885314-68885333 Msa1119720:intron 40.0%
AAGGAAGAAAGAATTCAGGG+TGG + chr7_3:68885333-68885352 Msa1119720:three_prime_UTR 40.0%
AAGAAAGAATTCAGGGTGGA+TGG + chr7_3:68885337-68885356 Msa1119720:three_prime_UTR 40.0%
AATTCAGGGTGGATGGAAAA+GGG + chr7_3:68885344-68885363 Msa1119720:three_prime_UTR 40.0%
GACGAAGAAGAAGATGTTGA+GGG - chr7_3:68885498-68885517 None:intergenic 40.0%
AGACGAAGAAGAAGATGTTG+AGG - chr7_3:68885499-68885518 None:intergenic 40.0%
CATCTTCTTCTTCGTCTTCT+TGG + chr7_3:68885502-68885521 Msa1119720:three_prime_UTR 40.0%
GGGCCTTAGAGAAATGTAAT+GGG - chr7_3:68885676-68885695 None:intergenic 40.0%
TGGGCCTTAGAGAAATGTAA+TGG - chr7_3:68885677-68885696 None:intergenic 40.0%
!!! GCCATTGGTTTTGCAGAGAA+TGG - chr7_3:68880671-68880690 None:intergenic 45.0%
TGGGGACAATAGCATCATCT+TGG - chr7_3:68880696-68880715 None:intergenic 45.0%
TGGAGTGAAGTGGAAGAGAA+CGG - chr7_3:68880739-68880758 None:intergenic 45.0%
! CTGCCATGAGTGTAGTTTGT+TGG - chr7_3:68880759-68880778 None:intergenic 45.0%
GAATTCAGCACTCTCGTGAA+GGG - chr7_3:68880825-68880844 None:intergenic 45.0%
TGAATTCAGCACTCTCGTGA+AGG - chr7_3:68880826-68880845 None:intergenic 45.0%
TTGATGAGAGACCAAAGACC+AGG - chr7_3:68880965-68880984 None:intergenic 45.0%
ACCGTGGACATAAGCATTTG+TGG + chr7_3:68881453-68881472 Msa1119720:intron 45.0%
GCCACAAATGCTTATGTCCA+CGG - chr7_3:68881457-68881476 None:intergenic 45.0%
GGAGCTCCTATGCAAAGATT+TGG - chr7_3:68881597-68881616 None:intergenic 45.0%
ATTATTGCCAACATCCGGCA+CGG - chr7_3:68881966-68881985 None:intergenic 45.0%
TGCCGGATGTTGGCAATAAT+TGG + chr7_3:68881966-68881985 Msa1119720:CDS 45.0%
AAGTCCATTGGCGTAAGTGA+AGG + chr7_3:68882006-68882025 Msa1119720:intron 45.0%
AATGCCTTCACTTACGCCAA+TGG - chr7_3:68882013-68882032 None:intergenic 45.0%
GGACATACAAAAAGCAGCCA+CGG + chr7_3:68882352-68882371 Msa1119720:three_prime_UTR 45.0%
TAAAGTGAACTAGGTGCCAG+AGG - chr7_3:68882444-68882463 None:intergenic 45.0%
AAATGCGCCATGGACATACT+TGG - chr7_3:68882823-68882842 None:intergenic 45.0%
GATAATGTCGAAATGCGCCA+TGG - chr7_3:68882833-68882852 None:intergenic 45.0%
ACCTCCAAATTGTATGGTGC+AGG + chr7_3:68882952-68882971 Msa1119720:three_prime_UTR 45.0%
ACCTGCACCATACAATTTGG+AGG - chr7_3:68882956-68882975 Msa1119730:CDS 45.0%
TTGCCAAATGCTGGAGACTT+TGG - chr7_3:68883039-68883058 Msa1119730:CDS 45.0%
AAAGTCTCCAGCATTTGGCA+AGG + chr7_3:68883038-68883057 Msa1119720:three_prime_UTR 45.0%
AAGTCTCCAGCATTTGGCAA+GGG + chr7_3:68883039-68883058 Msa1119720:three_prime_UTR 45.0%
! ATCGGTGTTTGCACACATCT+GGG - chr7_3:68883072-68883091 Msa1119730:CDS 45.0%
AGAGAGTCAAGAACCCAGAA+TGG - chr7_3:68883104-68883123 Msa1119730:CDS 45.0%
ACTCTCTCAGAATCTTGCTG+AGG + chr7_3:68883117-68883136 Msa1119720:three_prime_UTR 45.0%
CTCTCTCAGAATCTTGCTGA+GGG + chr7_3:68883118-68883137 Msa1119720:three_prime_UTR 45.0%
GTGGAAAGCCAGTATTCATC+AGG - chr7_3:68883203-68883222 Msa1119730:CDS 45.0%
GCACTACTGTCACTGTTAAG+TGG - chr7_3:68883227-68883246 Msa1119730:CDS 45.0%
TTAACAGTGACAGTAGTGCC+TGG + chr7_3:68883228-68883247 Msa1119720:three_prime_UTR 45.0%
ACATGCTGAGCACAAACTTG+AGG + chr7_3:68883310-68883329 Msa1119720:three_prime_UTR 45.0%
AAACAAACCTTCCGCCTGTT+AGG + chr7_3:68883358-68883377 Msa1119720:three_prime_UTR 45.0%
GCATACTTTGTCCTAACAGG+CGG - chr7_3:68883372-68883391 Msa1119730:CDS 45.0%
TATGCAAATGCCCTCTTGCT+TGG + chr7_3:68883387-68883406 Msa1119720:three_prime_UTR 45.0%
AGTGACTCAGTAGCAAAACC+TGG + chr7_3:68883531-68883550 Msa1119720:three_prime_UTR 45.0%
!!! CCCTCACCTTTTTGAAACTC+TGG - chr7_3:68884663-68884682 Msa1119730:intron 45.0%
! AAAGGTGAGGGAGCATGATT+TGG + chr7_3:68884672-68884691 Msa1119720:intron 45.0%
! AAGGTGAGGGAGCATGATTT+GGG + chr7_3:68884673-68884692 Msa1119720:intron 45.0%
TTGCAGTTCCAAACCCACAA+CGG + chr7_3:68884822-68884841 Msa1119720:intron 45.0%
! GTCTTTTTCCGTTGTGGGTT+TGG - chr7_3:68884833-68884852 Msa1119730:intron 45.0%
GAATTCAGGGTGGATGGAAA+AGG + chr7_3:68885343-68885362 Msa1119720:three_prime_UTR 45.0%
ATTCAGGGTGGATGGAAAAG+GGG + chr7_3:68885345-68885364 Msa1119720:three_prime_UTR 45.0%
CTTAGAGAGGAAAGAGGATG+CGG + chr7_3:68885415-68885434 Msa1119720:three_prime_UTR 45.0%
TTCTTCTTCGTCTTCTTGGC+TGG + chr7_3:68885506-68885525 Msa1119720:three_prime_UTR 45.0%
AGCATCATCTTGGCAGCCAT+TGG - chr7_3:68880686-68880705 None:intergenic 50.0%
GAAGTGGAAGAGAACGGAGA+GGG - chr7_3:68880733-68880752 None:intergenic 50.0%
TGAAGTGGAAGAGAACGGAG+AGG - chr7_3:68880734-68880753 None:intergenic 50.0%
! AAGGCACCAAGTCAAGTTGC+AGG + chr7_3:68881143-68881162 Msa1119720:CDS 50.0%
! AGGCACCAAGTCAAGTTGCA+GGG + chr7_3:68881144-68881163 Msa1119720:CDS 50.0%
TTTCTGCACTTGCATCAGCC+TGG + chr7_3:68881913-68881932 Msa1119720:CDS 50.0%
CACGGTTATGGTGAGCACAA+GGG - chr7_3:68881948-68881967 None:intergenic 50.0%
CATATGCCTGTGTTTAGCCG+TGG - chr7_3:68882372-68882391 None:intergenic 50.0%
TCTCAGGCCAAGTATGTCCA+TGG + chr7_3:68882813-68882832 Msa1119720:three_prime_UTR 50.0%
GGGACCTGCACCATACAATT+TGG - chr7_3:68882959-68882978 Msa1119730:CDS 50.0%
!! GGATGGTTTTGCCCATGTCA+TGG - chr7_3:68883015-68883034 Msa1119730:CDS 50.0%
CCAAATGCTGGAGACTTTGG+CGG - chr7_3:68883036-68883055 Msa1119730:CDS 50.0%
TGCATTCCCTTGCCAAATGC+TGG - chr7_3:68883048-68883067 Msa1119730:CDS 50.0%
! GATCGGTGTTTGCACACATC+TGG - chr7_3:68883073-68883092 Msa1119730:CDS 50.0%
CCAGAATGGCTCGTTGTGAT+CGG - chr7_3:68883090-68883109 Msa1119730:CDS 50.0%
CGATCACAACGAGCCATTCT+GGG + chr7_3:68883088-68883107 Msa1119720:three_prime_UTR 50.0%
GTTCTGCGCCTGATGAATAC+TGG + chr7_3:68883192-68883211 Msa1119720:three_prime_UTR 50.0%
ACTGTCACTGTTAAGTGGCG+TGG - chr7_3:68883222-68883241 Msa1119730:CDS 50.0%
ACTTTGTCCTAACAGGCGGA+AGG - chr7_3:68883368-68883387 Msa1119730:CDS 50.0%
TCCTGGTGATCCAAGCAAGA+GGG - chr7_3:68883400-68883419 Msa1119730:CDS 50.0%
AACCATGAACGGTTTCCTCC+TGG - chr7_3:68883417-68883436 Msa1119730:CDS 50.0%
GGGGTTCTTAGAGAGGAAAG+AGG + chr7_3:68885409-68885428 Msa1119720:three_prime_UTR 50.0%
AATGACGCAGCAGTCAAGCA+TGG - chr7_3:68885634-68885653 None:intergenic 50.0%
AGGGAGATGGTGTGGATGTG+GGG - chr7_3:68880714-68880733 None:intergenic 55.0%
GAGGGAGATGGTGTGGATGT+GGG - chr7_3:68880715-68880734 None:intergenic 55.0%
AGAGGGAGATGGTGTGGATG+TGG - chr7_3:68880716-68880735 None:intergenic 55.0%
GAAGAGAACGGAGAGGGAGA+TGG - chr7_3:68880727-68880746 None:intergenic 55.0%
! GGCACCAAGTCAAGTTGCAG+GGG + chr7_3:68881145-68881164 Msa1119720:CDS 55.0%
! ACCAAGTCAAGTTGCAGGGG+AGG + chr7_3:68881148-68881167 Msa1119720:CDS 55.0%
ACCTCCCCTGCAACTTGACT+TGG - chr7_3:68881152-68881171 None:intergenic 55.0%
AAGGAGTGATGGTTCCCAGC+AGG + chr7_3:68881870-68881889 Msa1119720:CDS 55.0%
AGGAGTGATGGTTCCCAGCA+GGG + chr7_3:68881871-68881890 Msa1119720:CDS 55.0%
GCACAAGGGAAACACTTGCC+AGG - chr7_3:68881934-68881953 None:intergenic 55.0%
GCACGGTTATGGTGAGCACA+AGG - chr7_3:68881949-68881968 None:intergenic 55.0%
TGTGCTCACCATAACCGTGC+CGG + chr7_3:68881949-68881968 Msa1119720:CDS 55.0%
ACCATAACCGTGCCGGATGT+TGG + chr7_3:68881956-68881975 Msa1119720:CDS 55.0%
CTGGACTCGAGCATCCAGAA+AGG + chr7_3:68882136-68882155 Msa1119720:CDS 55.0%
AAGCAGCCACGGCTAAACAC+AGG + chr7_3:68882363-68882382 Msa1119720:three_prime_UTR 55.0%
TTCCACTAGTGAGCAGCCCA+AGG + chr7_3:68882880-68882899 Msa1119720:three_prime_UTR 55.0%
ATGCTGGAGACTTTGGCGGA+TGG - chr7_3:68883032-68883051 Msa1119730:CDS 55.0%
CCGCCAAAGTCTCCAGCATT+TGG + chr7_3:68883033-68883052 Msa1119720:three_prime_UTR 55.0%
CCGATCACAACGAGCCATTC+TGG + chr7_3:68883087-68883106 Msa1119720:three_prime_UTR 55.0%
AGTAGTGCCTGGCTCAATGC+TGG + chr7_3:68883239-68883258 Msa1119720:three_prime_UTR 55.0%
! GATCTGTCCAGCATTGAGCC+AGG - chr7_3:68883249-68883268 Msa1119730:CDS 55.0%
GCTCAGCATGTCCGCAAGTA+AGG - chr7_3:68883301-68883320 Msa1119730:CDS 55.0%
CTCCTGGTGATCCAAGCAAG+AGG - chr7_3:68883401-68883420 Msa1119730:CDS 55.0%
CTCTTGCTTGGATCACCAGG+AGG + chr7_3:68883399-68883418 Msa1119720:three_prime_UTR 55.0%
CACCAGGAGGAAACCGTTCA+TGG + chr7_3:68883412-68883431 Msa1119720:three_prime_UTR 55.0%
! GGGGTCAGATCTGCGTTGAT+CGG + chr7_3:68885364-68885383 Msa1119720:three_prime_UTR 55.0%
! GTCAGATCTGCGTTGATCGG+AGG + chr7_3:68885367-68885386 Msa1119720:three_prime_UTR 55.0%
! AGATCTGCGTTGATCGGAGG+TGG + chr7_3:68885370-68885389 Msa1119720:three_prime_UTR 55.0%
CGTTGATCGGAGGTGGAAGA+AGG + chr7_3:68885377-68885396 Msa1119720:three_prime_UTR 55.0%
TGATCGGAGGTGGAAGAAGG+CGG + chr7_3:68885380-68885399 Msa1119720:three_prime_UTR 55.0%
GTGGGATGGGGTTCTTAGAG+AGG + chr7_3:68885402-68885421 Msa1119720:three_prime_UTR 55.0%
GCGTGGTAAGACCTCCATGA+GGG + chr7_3:68885437-68885456 Msa1119720:three_prime_UTR 55.0%
AGACCTCCATGAGGGAGATG+CGG + chr7_3:68885445-68885464 Msa1119720:three_prime_UTR 55.0%
ACGCAGCAGTCAAGCATGGA+GGG - chr7_3:68885630-68885649 None:intergenic 55.0%
GAACGGAGAGGGAGATGGTG+TGG - chr7_3:68880722-68880741 None:intergenic 60.0%
GGAGTGATGGTTCCCAGCAG+GGG + chr7_3:68881872-68881891 Msa1119720:CDS 60.0%
GAGTGATGGTTCCCAGCAGG+GGG + chr7_3:68881873-68881892 Msa1119720:CDS 60.0%
GCCAACATCCGGCACGGTTA+TGG - chr7_3:68881960-68881979 None:intergenic 60.0%
GACCTTGGGCTGCTCACTAG+TGG - chr7_3:68882885-68882904 None:intergenic 60.0%
GCCCTCTTGCTTGGATCACC+AGG + chr7_3:68883396-68883415 Msa1119720:three_prime_UTR 60.0%
GTGGAAGAAGGCGGTGGGAT+GGG + chr7_3:68885389-68885408 Msa1119720:three_prime_UTR 60.0%
TGGAAGAAGGCGGTGGGATG+GGG + chr7_3:68885390-68885409 Msa1119720:three_prime_UTR 60.0%
AGAGGAAAGAGGATGCGGCG+TGG + chr7_3:68885420-68885439 Msa1119720:three_prime_UTR 60.0%
GGCGTGGTAAGACCTCCATG+AGG + chr7_3:68885436-68885455 Msa1119720:three_prime_UTR 60.0%
TCTCCGCATCTCCCTCATGG+AGG - chr7_3:68885451-68885470 Msa1119730:CDS 60.0%
CTCTCTCCGCATCTCCCTCA+TGG - chr7_3:68885454-68885473 Msa1119730:CDS 60.0%
GACGCAGCAGTCAAGCATGG+AGG - chr7_3:68885631-68885650 None:intergenic 60.0%
!! AGTGCTGCTTGCCCCCTGCT+GGG - chr7_3:68881887-68881906 None:intergenic 65.0%
TCGGAGGTGGAAGAAGGCGG+TGG + chr7_3:68885383-68885402 Msa1119720:three_prime_UTR 65.0%
CGGAGGTGGAAGAAGGCGGT+GGG + chr7_3:68885384-68885403 Msa1119720:three_prime_UTR 65.0%
GGTGGAAGAAGGCGGTGGGA+TGG + chr7_3:68885388-68885407 Msa1119720:three_prime_UTR 65.0%
!! CAGTGCTGCTTGCCCCCTGC+TGG - chr7_3:68881888-68881907 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 68880607 68885710 68880607 ID=Msa1119720;Name=Msa1119720
chr7_3 mRNA 68880607 68885710 68880607 ID=Msa1119720-mRNA-1;Parent=Msa1119720;Name=Msa1119720-mRNA-1;_AED=0.01;_eAED=0.01;_QI=79|1|1|1|0.75|0.6|5|1621|259
chr7_3 exon 68880607 68881003 68880607 ID=Msa1119720-mRNA-1:exon:17259;Parent=Msa1119720-mRNA-1
chr7_3 exon 68881107 68881228 68881107 ID=Msa1119720-mRNA-1:exon:17260;Parent=Msa1119720-mRNA-1
chr7_3 exon 68881865 68882017 68881865 ID=Msa1119720-mRNA-1:exon:17261;Parent=Msa1119720-mRNA-1
chr7_3 exon 68882124 68883552 68882124 ID=Msa1119720-mRNA-1:exon:17262;Parent=Msa1119720-mRNA-1
chr7_3 exon 68885332 68885710 68885332 ID=Msa1119720-mRNA-1:exon:17263;Parent=Msa1119720-mRNA-1
chr7_3 five_prime_UTR 68880607 68880685 68880607 ID=Msa1119720-mRNA-1:five_prime_utr;Parent=Msa1119720-mRNA-1
chr7_3 CDS 68880686 68881003 68880686 ID=Msa1119720-mRNA-1:cds;Parent=Msa1119720-mRNA-1
chr7_3 CDS 68881107 68881228 68881107 ID=Msa1119720-mRNA-1:cds;Parent=Msa1119720-mRNA-1
chr7_3 CDS 68881865 68882017 68881865 ID=Msa1119720-mRNA-1:cds;Parent=Msa1119720-mRNA-1
chr7_3 CDS 68882124 68882310 68882124 ID=Msa1119720-mRNA-1:cds;Parent=Msa1119720-mRNA-1
chr7_3 three_prime_UTR 68882311 68883552 68882311 ID=Msa1119720-mRNA-1:three_prime_utr;Parent=Msa1119720-mRNA-1
chr7_3 three_prime_UTR 68885332 68885710 68885332 ID=Msa1119720-mRNA-1:three_prime_utr;Parent=Msa1119720-mRNA-1
Gene Sequence

>Msa1119720

ATGGCTGCCAAGATGATGCTATTGTCCCCACATCCACACCATCTCCCTCTCCGTTCTCTTCCACTTCACTCCAACAAACTACACTCATGGCAGCACCACCACCTTCAAAATCCAAAACCAAAGAAACTTCGTTTATCCCTTCACGAGAGTGCTGAATTCATCACACAAAACCAACAACAACTATTAAATCCCAATTCTCTCATGTTACTTACAGAGACTACTGGTTACTCTTTGGCTAGTTATTATACTTCTCTTGGTCTTTTTGTTATCTCTGTTCCTGGTCTTTGGTCTCTCATCAAACGTTCTGTCAAATCCAAGATTGTGAAGAAGACTTTTATAGATGAAGGTGGAAATAAGGCACCAAGTCAAGTTGCAGGGGAGGTACTATCATTCTTTACTCGTAATAACTTTGCAGTGGTTGATAGAGGAGAAACCATCACGTTTGAAGGAGTGATGGTTCCCAGCAGGGGGCAAGCAGCACTGTTAACTTTCTGCACTTGCATCAGCCTGGCAAGTGTTTCCCTTGTGCTCACCATAACCGTGCCGGATGTTGGCAATAATTGGTTTTGGTTAACCATCTTAAGTCCATTGGCAGGAGCTTATTACTGGACTCGAGCATCCAGAAAGGAGCAAGTTAAAGTGAAAATGATAGTTAAAGAAGATGGAACCTTGTCAGAAATCGTTGTTCAAGGTGACGACCAACAAGTCGAGCAAATGAGAAAGGAACTCAAGTTTAGTGAAAAGGGCATGGTCTATGTTAAGGGCCTTTTCGAAACATAG

Protein sequence

>Msa1119720

MAAKMMLLSPHPHHLPLRSLPLHSNKLHSWQHHHLQNPKPKKLRLSLHESAEFITQNQQQLLNPNSLMLLTETTGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVKKTFIDEGGNKAPSQVAGEVLSFFTRNNFAVVDRGETITFEGVMVPSRGQAALLTFCTCISLASVSLVLTITVPDVGNNWFWLTILSPLAGAYYWTRASRKEQVKVKMIVKEDGTLSEIVVQGDDQQVEQMRKELKFSEKGMVYVKGLFET*