AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0508400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0508400 MtrunA17_Chr3g0112761 95.435 460 21 0 1 460 1 460 0.0 887
Msa0508400 MtrunA17_Chr3g0112771 60.917 458 173 4 4 459 8 461 0.0 593
Msa0508400 MtrunA17_Chr4g0032331 48.913 460 219 8 1 452 1 452 4.08e-140 409
Msa0508400 MtrunA17_Chr5g0426431 37.342 474 259 15 8 450 12 478 4.12e-94 292
Msa0508400 MtrunA17_Chr4g0050341 35.504 476 269 12 8 449 19 490 5.62e-94 292
Msa0508400 MtrunA17_Chr3g0092641 37.342 474 259 15 8 450 12 478 3.88e-92 287
Msa0508400 MtrunA17_Chr3g0118671 33.895 475 282 10 10 455 8 479 1.48e-91 286
Msa0508400 MtrunA17_Chr3g0118771 34.958 472 275 10 8 450 21 489 9.41e-90 281
Msa0508400 MtrunA17_Chr6g0454191 34.599 474 273 12 10 450 12 481 9.49e-87 273
Msa0508400 MtrunA17_Chr8g0359821 34.534 472 273 14 10 450 12 478 1.06e-86 273
Msa0508400 MtrunA17_Chr6g0454401 34.177 474 275 13 10 450 12 481 6.17e-86 271
Msa0508400 MtrunA17_Chr6g0454361 34.810 474 271 12 10 450 13 481 1.09e-85 271
Msa0508400 MtrunA17_Chr8g0336331 34.534 472 272 12 10 450 12 477 1.13e-85 271
Msa0508400 MtrunA17_Chr3g0118701 32.979 470 283 10 10 450 17 483 1.95e-85 270
Msa0508400 MtrunA17_Chr3g0118691 34.607 471 274 12 10 450 17 483 2.22e-85 270
Msa0508400 MtrunA17_Chr6g0453961 33.755 474 277 11 10 450 21 490 4.85e-85 269
Msa0508400 MtrunA17_Chr3g0118711 34.737 475 268 14 10 450 15 481 1.04e-84 268
Msa0508400 MtrunA17_Chr6g0454301 34.664 476 267 13 10 450 265 731 7.73e-84 273
Msa0508400 MtrunA17_Chr6g0454301 36.820 239 140 4 226 456 1 236 4.68e-50 181
Msa0508400 MtrunA17_Chr6g0454261 32.091 483 286 13 3 450 5 480 5.99e-83 264
Msa0508400 MtrunA17_Chr6g0454181 34.105 475 273 13 10 450 12 480 9.79e-83 263
Msa0508400 MtrunA17_Chr6g0453951 32.298 483 285 13 3 450 52 527 1.03e-81 262
Msa0508400 MtrunA17_Chr6g0452771 34.884 473 272 12 10 450 12 480 1.14e-81 260
Msa0508400 MtrunA17_Chr3g0078841 33.122 474 277 13 10 450 12 478 1.97e-81 259
Msa0508400 MtrunA17_Chr6g0454331 32.438 484 288 14 1 450 1 479 5.33e-81 258
Msa0508400 MtrunA17_Chr6g0454341 32.489 474 284 12 8 450 10 478 9.64e-81 258
Msa0508400 MtrunA17_Chr6g0454291 33.610 482 283 14 1 450 1 477 4.27e-80 256
Msa0508400 MtrunA17_Chr6g0454321 34.071 452 260 12 10 429 12 457 7.24e-80 260
Msa0508400 MtrunA17_Chr6g0454151 34.029 479 280 14 3 450 5 478 2.15e-79 254
Msa0508400 MtrunA17_Chr2g0278711 32.704 477 285 14 4 450 7 477 2.51e-79 254
Msa0508400 MtrunA17_Chr7g0217881 34.615 468 262 11 10 450 12 462 3.59e-79 253
Msa0508400 MtrunA17_Chr6g0454201 34.105 475 273 15 10 450 13 481 2.06e-78 252
Msa0508400 MtrunA17_Chr5g0412111 34.542 469 272 12 8 451 5 463 1.16e-77 249
Msa0508400 MtrunA17_Chr5g0423981 32.759 464 259 12 10 450 12 445 4.51e-77 247
Msa0508400 MtrunA17_Chr6g0454211 32.981 473 281 12 10 450 299 767 1.66e-76 254
Msa0508400 MtrunA17_Chr6g0454211 32.472 271 128 10 114 366 3 236 3.62e-29 121
Msa0508400 MtrunA17_Chr6g0454131 33.686 472 278 13 10 450 12 479 2.43e-76 246
Msa0508400 MtrunA17_Chr6g0454121 32.770 473 281 14 10 450 12 479 7.83e-76 245
Msa0508400 MtrunA17_Chr6g0454351 32.135 473 268 13 10 450 14 465 9.33e-75 242
Msa0508400 MtrunA17_Chr3g0118751 32.415 472 258 12 8 450 6 445 1.11e-74 241
Msa0508400 MtrunA17_Chr6g0454141 33.333 477 274 15 10 450 12 480 2.57e-74 241
Msa0508400 MtrunA17_Chr3g0118661 34.873 433 244 12 8 408 13 439 5.77e-74 240
Msa0508400 MtrunA17_Chr5g0412101 34.591 477 275 12 2 451 6 472 1.64e-73 239
Msa0508400 MtrunA17_Chr5g0412131 33.689 469 277 11 8 451 12 471 1.59e-71 234
Msa0508400 MtrunA17_Chr6g0464881 34.821 448 256 13 10 438 13 443 7.37e-67 221
Msa0508400 MtrunA17_Chr5g0426401 39.557 316 167 12 149 452 10 313 1.81e-64 210
Msa0508400 MtrunA17_Chr6g0454251 33.333 390 225 11 10 367 9 395 6.12e-64 211
Msa0508400 MtrunA17_Chr8g0380531 33.193 476 266 19 1 446 1 454 1.76e-61 207
Msa0508400 MtrunA17_Chr6g0464921 33.185 449 267 13 8 438 11 444 1.97e-61 207
Msa0508400 MtrunA17_Chr3g0118721 37.919 298 164 9 162 450 5 290 2.79e-61 201
Msa0508400 MtrunA17_Chr6g0464841 33.902 469 272 17 2 449 3 454 6.84e-60 202
Msa0508400 MtrunA17_Chr8g0377921 30.064 469 288 10 7 446 3 460 2.52e-59 201
Msa0508400 MtrunA17_Chr5g0414331 32.035 462 273 14 8 449 13 453 4.22e-59 201
Msa0508400 MtrunA17_Chr7g0218791 31.788 453 266 16 8 438 5 436 4.50e-59 200
Msa0508400 MtrunA17_Chr7g0218831 31.111 450 280 13 8 446 6 436 3.44e-58 197
Msa0508400 MtrunA17_Chr5g0414321 31.263 467 284 15 3 451 6 453 4.63e-58 198
Msa0508400 MtrunA17_Chr3g0121991 31.799 478 285 13 5 449 76 545 5.29e-58 200
Msa0508400 MtrunA17_Chr7g0218841 30.989 455 275 15 8 446 6 437 1.07e-57 196
Msa0508400 MtrunA17_Chr7g0218811 31.264 451 279 11 8 446 15 446 1.10e-57 196
Msa0508400 MtrunA17_Chr6g0464871 33.263 472 271 16 2 449 15 466 1.29e-57 197
Msa0508400 MtrunA17_Chr6g0464861 34.279 458 266 15 10 449 13 453 1.37e-57 196
Msa0508400 MtrunA17_Chr4g0053321 30.085 472 294 13 3 450 21 480 4.05e-57 196
Msa0508400 MtrunA17_Chr8g0365811 29.979 487 287 16 1 449 487 957 5.47e-57 202
Msa0508400 MtrunA17_Chr8g0365811 31.873 411 244 13 9 391 10 412 1.98e-51 187
Msa0508400 MtrunA17_Chr5g0431441 28.387 465 293 11 9 450 19 466 1.89e-56 194
Msa0508400 MtrunA17_Chr6g0454271 35.764 288 175 7 169 450 4 287 3.08e-56 188
Msa0508400 MtrunA17_Chr4g0053501 29.449 472 297 12 3 450 6 465 4.12e-56 194
Msa0508400 MtrunA17_Chr7g0265101 30.600 500 271 17 8 451 9 488 3.24e-55 191
Msa0508400 MtrunA17_Chr3g0098111 28.632 468 301 10 8 449 9 469 3.51e-55 191
Msa0508400 MtrunA17_Chr7g0218821 31.670 461 260 15 8 438 5 440 4.74e-55 189
Msa0508400 MtrunA17_Chr1g0207971 29.854 479 280 14 1 449 1 453 1.29e-54 189
Msa0508400 MtrunA17_Chr7g0250001 29.211 469 286 12 10 455 8 453 6.33e-54 187
Msa0508400 MtrunA17_Chr8g0366391 30.204 490 279 17 8 452 9 480 7.42e-54 187
Msa0508400 MtrunA17_Chr3g0122001 31.393 481 283 16 5 449 483 952 7.75e-54 194
Msa0508400 MtrunA17_Chr3g0122001 30.879 489 290 15 5 456 3 480 8.10e-53 191
Msa0508400 MtrunA17_Chr8g0377941 30.105 475 283 13 7 450 6 462 2.15e-53 186
Msa0508400 MtrunA17_Chr4g0072771 27.556 450 297 8 11 446 28 462 3.68e-53 185
Msa0508400 MtrunA17_Chr1g0161351 30.213 470 291 13 8 449 37 497 7.43e-53 185
Msa0508400 MtrunA17_Chr6g0462531 31.006 487 269 16 1 446 1 461 8.53e-53 184
Msa0508400 MtrunA17_Chr1g0207861 29.752 484 307 12 1 458 1 477 9.82e-53 184
Msa0508400 MtrunA17_Chr6g0486251 31.013 474 274 14 9 447 7 462 1.25e-52 183
Msa0508400 MtrunA17_Chr6g0486201 31.013 474 274 14 9 447 7 462 1.25e-52 183
Msa0508400 MtrunA17_Chr6g0454221 38.596 228 128 4 226 446 5 227 1.95e-52 178
Msa0508400 MtrunA17_Chr1g0207951 29.713 488 280 16 8 458 656 1117 2.61e-52 190
Msa0508400 MtrunA17_Chr1g0207951 27.708 480 276 13 8 449 124 570 1.07e-49 182
Msa0508400 MtrunA17_Chr5g0419771 29.376 497 290 17 9 457 37 520 5.35e-52 183
Msa0508400 MtrunA17_Chr4g0072761 27.766 461 298 11 3 446 7 449 5.62e-52 181
Msa0508400 MtrunA17_Chr4g0044511 28.484 488 294 13 3 451 35 506 1.34e-51 182
Msa0508400 MtrunA17_Chr6g0462571 29.079 478 285 14 1 445 1 457 2.20e-51 181
Msa0508400 MtrunA17_Chr7g0265141 29.400 500 264 16 3 440 4 476 2.88e-51 180
Msa0508400 MtrunA17_Chr7g0265041 30.297 505 264 15 8 450 11 489 6.14e-51 180
Msa0508400 MtrunA17_Chr4g0014061 28.119 505 277 13 3 453 4 476 1.67e-50 178
Msa0508400 MtrunA17_Chr6g0462551 28.571 483 284 13 1 445 1 460 2.12e-50 178
Msa0508400 MtrunA17_Chr7g0275681 30.909 495 263 16 9 450 13 481 3.41e-50 177
Msa0508400 MtrunA17_Chr1g0207981 29.149 470 297 15 8 450 13 473 4.11e-50 177
Msa0508400 MtrunA17_Chr6g0462521 30.608 477 270 15 1 446 1 447 5.42e-50 176
Msa0508400 MtrunA17_Chr6g0459311 30.720 472 274 15 11 447 16 469 5.87e-50 177
Msa0508400 MtrunA17_Chr7g0265151 29.800 500 270 16 8 450 9 484 6.02e-50 177
Msa0508400 MtrunA17_Chr1g0173121 28.238 471 285 13 9 449 15 462 1.50e-49 175
Msa0508400 MtrunA17_Chr5g0448551 29.977 437 268 16 9 427 8 424 7.95e-49 173
Msa0508400 MtrunA17_Chr6g0454171 31.176 340 191 8 118 450 7 310 1.13e-48 169
Msa0508400 MtrunA17_Chr5g0419761 29.058 499 287 18 3 450 4 486 1.24e-48 173
Msa0508400 MtrunA17_Chr5g0448521 28.542 487 293 14 5 453 2 471 1.58e-48 172
Msa0508400 MtrunA17_Chr1g0207931 28.481 474 253 14 1 449 85 497 1.69e-48 173
Msa0508400 MtrunA17_Chr7g0265051 28.074 488 295 14 8 450 9 485 2.06e-48 173
Msa0508400 MtrunA17_Chr1g0179901 27.723 505 279 15 9 452 17 496 6.82e-48 171
Msa0508400 MtrunA17_Chr5g0431361 26.452 465 300 12 8 451 12 455 7.30e-48 171
Msa0508400 MtrunA17_Chr6g0462541 28.178 472 287 14 9 445 5 459 1.16e-47 171
Msa0508400 MtrunA17_Chr4g0011051 28.088 502 284 13 8 452 9 490 1.17e-47 171
Msa0508400 MtrunA17_Chr8g0355011 29.167 360 202 7 102 450 45 362 1.19e-47 168
Msa0508400 MtrunA17_Chr7g0243771 27.823 496 284 14 8 452 6 478 2.13e-47 170
Msa0508400 MtrunA17_Chr8g0361371 28.866 485 275 15 9 447 8 468 3.77e-47 169
Msa0508400 MtrunA17_Chr7g0249981 28.387 465 287 13 10 451 27 468 5.13e-47 169
Msa0508400 MtrunA17_Chr3g0079731 28.773 497 283 18 1 446 1 477 1.06e-46 168
Msa0508400 MtrunA17_Chr7g0243681 29.880 502 265 19 8 452 11 482 1.15e-46 168
Msa0508400 MtrunA17_Chr7g0243931 27.642 492 292 14 9 452 18 493 1.49e-46 168
Msa0508400 MtrunA17_Chr7g0232331 29.314 481 289 16 4 449 2 466 2.57e-46 167
Msa0508400 MtrunA17_Chr7g0243801 28.916 498 286 15 3 452 2 479 3.00e-46 167
Msa0508400 MtrunA17_Chr7g0232401 30.628 382 243 8 77 442 85 460 3.30e-46 166
Msa0508400 MtrunA17_Chr8g0336741 28.879 464 291 15 18 453 23 475 5.67e-46 166
Msa0508400 MtrunA17_Chr5g0401721 26.763 482 312 13 1 451 1 472 6.68e-46 166
Msa0508400 MtrunA17_Chr6g0449931 36.482 307 166 9 168 454 175 472 1.13e-45 165
Msa0508400 MtrunA17_Chr7g0232391 28.571 462 278 12 29 446 9 462 1.73e-45 164
Msa0508400 MtrunA17_Chr5g0442561 28.717 491 292 16 5 453 2 476 1.93e-45 164
Msa0508400 MtrunA17_Chr7g0232341 28.898 481 291 15 4 449 2 466 2.34e-45 164
Msa0508400 MtrunA17_Chr8g0336651 30.729 384 219 11 100 453 881 1247 2.40e-45 169
Msa0508400 MtrunA17_Chr8g0336651 30.685 365 224 11 102 447 108 462 1.31e-42 161
Msa0508400 MtrunA17_Chr8g0336651 33.209 268 146 7 186 447 532 772 5.96e-32 129
Msa0508400 MtrunA17_Chr1g0159551 27.813 471 276 14 13 449 19 459 2.88e-45 164
Msa0508400 MtrunA17_Chr8g0336731 30.959 365 223 11 102 447 134 488 3.18e-45 164
Msa0508400 MtrunA17_Chr7g0243631 28.458 506 272 19 8 452 13 489 5.01e-45 164
Msa0508400 MtrunA17_Chr8g0373301 29.303 488 288 20 1 451 1 468 6.00e-45 163
Msa0508400 MtrunA17_Chr4g0044521 28.392 479 289 14 3 446 4 463 6.12e-45 163
Msa0508400 MtrunA17_Chr8g0336691 30.105 382 222 12 100 453 1019 1383 8.24e-45 168
Msa0508400 MtrunA17_Chr8g0336691 30.831 373 215 11 102 447 115 471 1.50e-43 164
Msa0508400 MtrunA17_Chr8g0336691 33.101 287 161 7 168 447 648 910 4.24e-41 157
Msa0508400 MtrunA17_Chr5g0431421 27.115 461 297 11 9 451 11 450 1.07e-44 162
Msa0508400 MtrunA17_Chr8g0335141 29.598 473 279 16 9 445 10 464 1.29e-44 162
Msa0508400 MtrunA17_Chr5g0393591 28.017 464 265 14 9 449 18 435 1.72e-44 161
Msa0508400 MtrunA17_Chr5g0431401 26.464 461 300 10 9 451 11 450 2.70e-44 160
Msa0508400 MtrunA17_Chr1g0207831 26.947 475 295 14 8 449 8 463 2.97e-44 161
Msa0508400 MtrunA17_Chr7g0243951 27.328 494 292 14 8 452 11 486 3.60e-44 161
Msa0508400 MtrunA17_Chr6g0463861 27.778 486 290 16 8 452 11 476 4.30e-44 161
Msa0508400 MtrunA17_Chr5g0428081 27.673 477 296 12 8 446 11 476 4.40e-44 161
Msa0508400 MtrunA17_Chr4g0044501 29.857 489 279 18 8 452 10 478 4.71e-44 161
Msa0508400 MtrunA17_Chr5g0431371 26.247 461 301 9 9 451 11 450 6.71e-44 160
Msa0508400 MtrunA17_Chr4g0066261 29.209 493 270 19 8 446 11 478 1.12e-43 160
Msa0508400 MtrunA17_Chr8g0347281 29.032 465 277 14 11 442 21 465 1.14e-43 160
Msa0508400 MtrunA17_Chr8g0347271 29.032 465 277 16 11 442 22 466 1.49e-43 159
Msa0508400 MtrunA17_Chr1g0153451 29.919 371 230 10 102 453 108 467 2.33e-43 159
Msa0508400 MtrunA17_Chr4g0066221 29.400 483 281 16 8 446 11 477 2.67e-43 159
Msa0508400 MtrunA17_Chr8g0335161 29.583 480 287 16 5 449 3 466 3.11e-43 158
Msa0508400 MtrunA17_Chr8g0374901 28.958 480 284 20 8 446 12 475 5.75e-43 158
Msa0508400 MtrunA17_Chr7g0249931 28.696 460 280 16 4 438 36 472 1.15e-42 157
Msa0508400 MtrunA17_Chr4g0060511 28.425 489 295 14 9 452 12 490 1.74e-42 157
Msa0508400 MtrunA17_Chr7g0232411 28.043 460 283 10 29 446 9 462 1.83e-42 156
Msa0508400 MtrunA17_Chr4g0066131 26.789 489 300 14 3 452 8 477 4.38e-42 155
Msa0508400 MtrunA17_Chr5g0442601 27.237 503 294 15 3 454 399 880 5.75e-42 159
Msa0508400 MtrunA17_Chr5g0442601 27.616 344 188 9 51 378 24 322 1.89e-27 115
Msa0508400 MtrunA17_Chr5g0442521 26.863 510 280 16 5 453 2 479 8.11e-42 154
Msa0508400 MtrunA17_Chr7g0243871 26.585 489 303 14 3 452 4 475 1.19e-41 154
Msa0508400 MtrunA17_Chr4g0066281 27.479 484 284 16 3 446 7 463 1.82e-41 154
Msa0508400 MtrunA17_Chr4g0066201 27.406 478 290 14 5 446 15 471 1.84e-41 154
Msa0508400 MtrunA17_Chr6g0454371 38.506 174 104 2 277 450 1 171 2.78e-41 145
Msa0508400 MtrunA17_Chr4g0044481 30.250 400 232 11 8 389 27 397 6.75e-41 151
Msa0508400 MtrunA17_Chr4g0066171 27.950 483 292 15 5 452 18 479 1.05e-40 152
Msa0508400 MtrunA17_Chr5g0442491 27.944 501 285 17 5 453 2 478 2.21e-40 150
Msa0508400 MtrunA17_Chr7g0243761 28.274 481 275 14 8 452 11 457 3.48e-40 150
Msa0508400 MtrunA17_Chr8g0334831 27.310 487 289 15 9 447 7 476 3.85e-40 150
Msa0508400 MtrunA17_Chr8g0374971 26.205 477 303 13 8 446 12 477 4.48e-40 150
Msa0508400 MtrunA17_Chr6g0463851 26.749 486 292 16 8 446 11 479 4.64e-40 150
Msa0508400 MtrunA17_Chr5g0420801 28.913 460 293 14 9 446 8 455 6.21e-40 149
Msa0508400 MtrunA17_Chr7g0275511 31.793 368 216 14 103 447 118 473 6.79e-40 149
Msa0508400 MtrunA17_Chr8g0334851 27.621 496 279 18 8 452 6 472 7.61e-40 149
Msa0508400 MtrunA17_Chr7g0235051 28.512 477 258 18 8 442 11 446 1.01e-39 149
Msa0508400 MtrunA17_Chr5g0416821 28.274 481 301 17 3 452 9 476 1.08e-39 149
Msa0508400 MtrunA17_Chr7g0243861 27.345 501 288 17 9 455 15 493 1.28e-39 149
Msa0508400 MtrunA17_Chr3g0106231 25.941 478 307 14 2 460 12 461 1.38e-39 148
Msa0508400 MtrunA17_Chr8g0374941 27.859 481 290 15 8 446 949 1414 1.61e-39 152
Msa0508400 MtrunA17_Chr8g0374941 27.406 478 260 20 8 428 476 923 6.43e-37 144
Msa0508400 MtrunA17_Chr8g0374941 25.761 493 301 14 8 454 11 484 3.73e-36 142
Msa0508400 MtrunA17_Chr7g0243781 25.904 498 298 14 3 452 4 478 2.11e-39 148
Msa0508400 MtrunA17_Chr5g0440421 27.613 507 301 19 1 452 1 496 2.66e-39 148
Msa0508400 MtrunA17_Chr5g0442581 28.431 510 285 20 5 459 2 486 2.66e-39 149
Msa0508400 MtrunA17_Chr5g0442541 28.515 505 268 20 5 453 2 469 4.08e-39 147
Msa0508400 MtrunA17_Chr8g0334861 35.821 268 139 8 201 446 204 460 5.72e-39 147
Msa0508400 MtrunA17_Chr7g0218311 26.186 485 292 14 8 446 16 480 6.72e-39 147
Msa0508400 MtrunA17_Chr2g0329111 28.274 481 291 19 9 446 7 476 9.46e-39 146
Msa0508400 MtrunA17_Chr4g0066151 26.694 487 291 15 3 446 13 476 1.19e-38 146
Msa0508400 MtrunA17_Chr2g0294931 26.514 479 301 14 8 446 11 478 1.65e-38 146
Msa0508400 MtrunA17_Chr8g0339461 31.529 314 174 9 168 453 175 475 1.92e-38 145
Msa0508400 MtrunA17_Chr5g0410941 27.273 484 293 15 8 449 23 489 4.28e-38 145
Msa0508400 MtrunA17_Chr7g0265111 28.138 494 288 17 9 451 40 517 4.36e-38 145
Msa0508400 MtrunA17_Chr6g0463891 27.160 486 315 12 3 452 5 487 6.79e-38 144
Msa0508400 MtrunA17_Chr8g0339451 30.729 384 214 15 93 442 91 456 8.72e-38 143
Msa0508400 MtrunA17_Chr8g0339441 30.952 420 211 14 45 442 60 422 9.16e-38 142
Msa0508400 MtrunA17_Chr2g0294921 28.340 494 273 17 8 446 160 627 1.00e-37 145
Msa0508400 MtrunA17_Chr8g0370941 26.654 514 299 19 1 456 1 494 1.37e-37 144
Msa0508400 MtrunA17_Chr8g0339631 30.025 393 242 13 74 442 78 461 1.63e-37 143
Msa0508400 MtrunA17_Chr7g0232311 32.082 293 173 7 171 446 177 460 2.00e-37 142
Msa0508400 MtrunA17_Chr5g0401851 26.819 481 308 14 10 452 12 486 2.83e-37 142
Msa0508400 MtrunA17_Chr8g0382021 34.559 272 150 7 197 449 226 488 3.88e-37 142
Msa0508400 MtrunA17_Chr5g0429711 26.016 492 281 16 4 449 7 461 5.40e-37 141
Msa0508400 MtrunA17_Chr7g0249961 34.553 246 143 6 225 460 33 270 1.50e-36 135
Msa0508400 MtrunA17_Chr8g0339601 32.550 298 170 10 168 442 34 323 2.17e-36 137
Msa0508400 MtrunA17_Chr8g0350881 27.721 487 283 18 8 446 12 477 3.24e-36 139
Msa0508400 MtrunA17_Chr8g0336261 43.066 137 76 1 277 413 1 135 4.62e-36 130
Msa0508400 MtrunA17_Chr4g0042891 28.662 471 283 16 11 446 10 462 5.34e-36 138
Msa0508400 MtrunA17_Chr5g0442511 26.369 493 288 15 1 454 42 498 5.62e-36 139
Msa0508400 MtrunA17_Chr5g0429681 27.664 488 275 17 5 446 41 496 1.29e-35 138
Msa0508400 MtrunA17_Chr8g0374931 26.403 481 299 17 8 446 11 478 2.17e-35 137
Msa0508400 MtrunA17_Chr1g0153461 38.462 208 112 6 254 446 3 209 5.22e-35 129
Msa0508400 MtrunA17_Chr2g0302991 30.201 298 182 7 166 446 171 459 6.00e-35 135
Msa0508400 MtrunA17_Chr3g0106251 30.132 302 183 9 169 460 20 303 7.49e-35 132
Msa0508400 MtrunA17_Chr5g0416741 27.479 484 314 14 3 452 6 486 1.07e-34 135
Msa0508400 MtrunA17_Chr5g0403641 33.209 268 146 6 201 442 235 495 5.06e-34 134
Msa0508400 MtrunA17_Chr8g0369341 27.137 468 303 14 8 446 7 465 2.07e-33 131
Msa0508400 MtrunA17_Chr8g0361411 27.056 462 309 11 1 446 1 450 3.95e-33 130
Msa0508400 MtrunA17_Chr2g0302961 27.945 365 223 10 103 446 117 462 1.71e-32 129
Msa0508400 MtrunA17_Chr7g0243851 25.562 489 264 14 9 452 12 445 4.99e-32 127
Msa0508400 MtrunA17_Chr2g0294941 28.771 358 217 11 105 434 17 364 8.27e-32 125
Msa0508400 MtrunA17_Chr1g0165701 25.349 501 298 16 8 458 15 489 8.77e-32 127
Msa0508400 MtrunA17_Chr8g0355221 27.979 386 227 12 106 458 125 492 1.52e-31 126
Msa0508400 MtrunA17_Chr2g0307961 27.917 480 282 16 10 450 15 469 2.37e-31 125
Msa0508400 MtrunA17_Chr6g0482061 27.872 470 266 15 18 437 21 467 2.54e-31 125
Msa0508400 MtrunA17_Chr7g0243711 35.747 221 124 4 248 452 101 319 1.93e-30 120
Msa0508400 MtrunA17_Chr5g0432731 29.008 262 161 7 202 452 52 299 4.24e-30 119
Msa0508400 MtrunA17_Chr7g0243611 32.302 291 164 10 111 389 2 271 5.54e-30 118
Msa0508400 MtrunA17_Chr4g0042931 28.085 470 285 18 11 446 10 460 5.70e-30 121
Msa0508400 MtrunA17_Chr7g0232351 27.249 378 227 10 29 366 9 378 1.36e-28 116
Msa0508400 MtrunA17_Chr7g0241801 26.292 445 261 17 3 424 4 404 1.47e-28 117
Msa0508400 MtrunA17_Chr8g0367221 25.322 466 283 15 1 426 1281 1721 1.60e-28 119
Msa0508400 MtrunA17_Chr8g0367221 36.932 176 103 4 257 426 1058 1231 9.71e-25 108
Msa0508400 MtrunA17_Chr8g0367221 25.799 407 253 10 3 379 7 394 1.24e-23 104
Msa0508400 MtrunA17_Chr1g0207881 23.707 464 245 14 8 449 8 384 2.01e-28 116
Msa0508400 MtrunA17_Chr7g0243811 25.815 399 233 12 20 384 1 370 1.42e-27 113
Msa0508400 MtrunA17_Chr6g0453941 29.582 311 154 10 10 311 13 267 2.04e-27 110
Msa0508400 MtrunA17_Chr3g0079711 38.674 181 92 6 284 446 6 185 3.67e-27 107
Msa0508400 MtrunA17_Chr7g0241781 24.379 443 285 16 5 434 6 411 3.11e-26 110
Msa0508400 MtrunA17_Chr6g0453981 32.895 228 135 8 114 326 3 227 4.46e-26 105
Msa0508400 MtrunA17_Chr6g0454231 28.958 259 135 9 201 453 7 222 1.16e-25 109
Msa0508400 MtrunA17_Chr6g0454231 29.646 226 134 7 10 210 252 477 1.51e-18 87.8
Msa0508400 MtrunA17_Chr7g0243911 34.804 204 107 4 250 433 17 214 1.44e-25 104
Msa0508400 MtrunA17_Chr7g0231631 30.620 258 169 5 201 452 9 262 1.94e-24 102
Msa0508400 MtrunA17_Chr5g0409591 23.366 505 287 16 9 445 5 477 2.17e-24 105
Msa0508400 MtrunA17_Chr5g0427571 31.225 253 156 9 189 430 32 277 7.13e-24 101
Msa0508400 MtrunA17_Chr6g0466831 25.054 463 289 19 2 434 12 446 3.52e-23 102
Msa0508400 MtrunA17_Chr2g0278721 25.159 473 279 18 2 427 511 955 4.87e-23 102
Msa0508400 MtrunA17_Chr2g0278721 30.222 225 144 8 206 424 224 441 6.86e-18 86.7
Msa0508400 MtrunA17_Chr4g0040711 29.565 230 146 6 204 426 215 435 5.19e-23 101
Msa0508400 MtrunA17_Chr8g0336321 31.799 239 152 8 189 420 202 436 7.32e-23 100
Msa0508400 MtrunA17_Chr8g0336271 30.268 261 153 9 10 244 12 269 2.31e-22 96.7
Msa0508400 MtrunA17_Chr5g0431431 29.817 218 134 5 170 384 123 324 3.69e-22 97.4
Msa0508400 MtrunA17_Chr8g0336251 31.381 239 153 8 189 420 202 436 7.78e-22 97.8
Msa0508400 MtrunA17_Chr4g0029131 23.965 459 269 20 11 426 15 436 8.14e-22 98.6
Msa0508400 MtrunA17_Chr4g0066141 36.129 155 83 3 314 452 200 354 2.88e-21 95.1
Msa0508400 MtrunA17_Chr6g0466841 23.593 462 297 17 2 434 12 446 3.92e-21 95.9
Msa0508400 MtrunA17_Chr8g0337381 41.221 131 68 4 328 453 3 129 1.80e-20 87.4
Msa0508400 MtrunA17_Chr5g0426411 33.136 169 95 5 2 155 7 172 2.34e-20 88.2
Msa0508400 MtrunA17_Chr4g0040691 27.826 230 150 6 204 426 215 435 2.37e-20 93.2
Msa0508400 MtrunA17_Chr2g0283041 29.282 181 118 5 251 423 252 430 6.24e-20 92.0
Msa0508400 MtrunA17_Chr4g0069611 23.377 462 269 18 5 421 12 433 6.70e-20 92.0
Msa0508400 MtrunA17_Chr8g0357361 33.679 193 122 4 199 389 61 249 9.78e-20 89.0
Msa0508400 MtrunA17_Chr1g0196851 23.241 469 269 20 8 426 49 476 1.03e-19 91.7
Msa0508400 MtrunA17_Chr2g0319791 31.308 214 127 8 230 425 223 434 1.30e-19 91.3
Msa0508400 MtrunA17_Chr4g0029151 23.246 456 282 17 8 426 20 444 1.73e-19 90.9
Msa0508400 MtrunA17_Chr7g0250021 27.244 312 204 12 4 301 8 310 4.52e-19 88.2
Msa0508400 MtrunA17_Chr2g0319761 31.818 198 118 7 244 426 240 435 1.12e-18 88.2
Msa0508400 MtrunA17_Chr2g0278741 30.667 225 143 8 206 424 306 523 2.11e-18 87.8
Msa0508400 MtrunA17_Chr2g0319751 28.452 239 151 7 196 425 684 911 5.68e-18 87.0
Msa0508400 MtrunA17_Chr2g0319751 26.050 238 134 6 196 425 207 410 2.05e-14 75.9
Msa0508400 MtrunA17_Chr2g0319731 28.390 236 149 7 199 425 227 451 1.52e-17 84.7
Msa0508400 MtrunA17_Chr3g0092031 30.233 172 108 5 256 421 5 170 3.16e-17 80.1
Msa0508400 MtrunA17_Chr4g0039881 28.947 228 149 8 205 426 195 415 3.53e-17 83.6
Msa0508400 MtrunA17_Chr6g0454111 33.548 155 93 6 149 297 33 183 3.79e-17 79.3
Msa0508400 MtrunA17_Chr6g0464091 30.189 212 140 7 193 402 215 420 5.14e-17 83.2
Msa0508400 MtrunA17_Chr2g0319801 29.954 217 132 7 218 425 229 434 1.79e-16 81.6
Msa0508400 MtrunA17_Chr2g0302851 28.636 220 144 8 208 421 222 434 5.16e-16 80.1
Msa0508400 MtrunA17_Chr6g0454281 28.125 192 115 5 10 178 12 203 4.23e-15 74.3
Msa0508400 MtrunA17_Chr2g0321331 29.412 170 93 6 265 426 94 244 6.41e-13 68.9
Msa0508400 MtrunA17_Chr2g0279741 39.286 84 45 1 251 334 30 107 1.34e-12 65.1
Msa0508400 MtrunA17_Chr4g0029161 22.489 458 249 21 11 426 15 408 1.29e-11 66.2
Msa0508400 MtrunA17_Chr6g0454391 40.323 62 37 0 343 404 13 74 2.76e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0508400 AT3G55700.1 52.979 470 196 8 1 457 1 458 1.21e-170 488
Msa0508400 AT3G11340.1 54.305 453 196 6 2 452 4 447 1.56e-170 487
Msa0508400 AT3G55710.1 49.254 469 223 7 1 459 1 464 9.99e-151 437
Msa0508400 AT5G05860.1 50.110 455 219 5 1 452 1 450 1.06e-148 431
Msa0508400 AT5G05870.1 48.690 458 222 5 1 449 1 454 4.37e-146 425
Msa0508400 AT5G05880.1 48.148 459 223 6 1 452 1 451 1.88e-145 423
Msa0508400 AT5G05900.1 50.000 460 206 8 1 449 1 447 1.79e-141 413
Msa0508400 AT5G05890.1 46.522 460 233 4 1 452 1 455 3.32e-138 405
Msa0508400 AT3G46670.1 45.916 453 231 8 6 452 7 451 1.81e-131 387
Msa0508400 AT5G59590.1 44.000 450 240 7 2 446 4 446 3.71e-129 382
Msa0508400 AT5G59580.1 43.722 446 234 9 8 446 9 444 5.26e-125 371
Msa0508400 AT3G46660.1 45.336 461 235 11 1 452 6 458 1.05e-123 368
Msa0508400 AT3G46700.1 43.016 451 245 8 2 449 3 444 3.73e-122 363
Msa0508400 AT5G38010.1 45.154 454 233 9 2 446 4 450 5.26e-120 358
Msa0508400 AT3G46680.1 43.267 453 240 9 1 446 4 446 1.22e-119 357
Msa0508400 AT3G46690.1 43.237 451 243 8 2 446 3 446 4.15e-118 353
Msa0508400 AT2G26480.1 41.228 456 252 8 1 450 1 446 1.98e-116 349
Msa0508400 AT3G46650.1 41.203 449 237 8 8 452 10 435 3.13e-114 343
Msa0508400 AT3G46720.1 42.444 450 239 9 2 446 3 437 7.70e-113 340
Msa0508400 AT5G38040.1 44.495 436 228 9 17 446 19 446 8.28e-113 340
Msa0508400 AT1G22340.1 33.192 473 273 13 9 446 14 478 6.67e-86 272
Msa0508400 AT1G22360.1 33.753 477 272 14 9 450 11 478 2.37e-85 270
Msa0508400 AT1G22380.1 32.632 475 280 12 9 450 14 481 1.15e-84 268
Msa0508400 AT1G22400.1 31.933 476 283 13 9 450 14 482 2.62e-83 265
Msa0508400 AT1G78270.1 33.333 477 274 15 10 451 15 482 2.61e-80 257
Msa0508400 AT1G22360.2 32.914 477 264 14 9 450 11 466 4.52e-79 253
Msa0508400 AT5G37950.1 41.429 350 192 8 23 366 1 343 3.27e-77 245
Msa0508400 AT1G22370.2 33.481 451 261 14 9 428 14 456 1.11e-76 248
Msa0508400 AT5G37950.2 40.688 349 190 8 23 366 1 337 1.73e-75 240
Msa0508400 AT2G43820.1 31.078 473 279 16 1 451 1 448 1.52e-61 207
Msa0508400 AT3G21560.1 29.025 472 286 13 9 446 13 469 2.54e-60 205
Msa0508400 AT2G31790.1 30.579 484 269 15 1 447 1 454 4.46e-59 201
Msa0508400 AT2G31750.1 30.882 476 282 17 1 450 1 455 4.54e-59 201
Msa0508400 AT2G31750.2 30.882 476 282 17 1 450 1 455 8.95e-59 201
Msa0508400 AT2G43840.1 30.851 470 280 18 1 449 1 446 8.17e-58 197
Msa0508400 AT2G43840.2 30.851 470 280 18 1 449 1 446 1.13e-57 197
Msa0508400 AT2G23260.1 29.764 467 290 13 3 449 5 453 6.57e-57 195
Msa0508400 AT1G05680.1 31.398 465 278 14 5 446 3 449 4.30e-56 193
Msa0508400 AT2G36760.1 30.309 485 291 14 9 453 15 492 1.32e-55 192
Msa0508400 AT3G02100.1 29.560 477 279 15 9 454 14 464 1.69e-55 191
Msa0508400 AT4G15490.1 27.696 473 289 12 1 438 1 455 5.31e-55 191
Msa0508400 AT4G15500.1 28.964 473 298 9 9 456 10 469 9.91e-55 190
Msa0508400 AT2G23250.1 29.047 451 292 11 11 449 1 435 1.28e-54 188
Msa0508400 AT3G53160.1 30.103 485 286 17 9 450 9 483 5.33e-54 188
Msa0508400 AT2G36790.1 29.630 486 295 12 9 454 14 492 6.47e-54 188
Msa0508400 AT2G36970.1 28.051 467 293 13 3 438 5 459 8.83e-53 185
Msa0508400 AT5G17050.1 28.694 467 302 13 4 453 8 460 1.56e-52 183
Msa0508400 AT1G05675.1 31.049 467 277 14 5 446 3 449 1.62e-52 183
Msa0508400 AT2G36780.1 30.020 493 286 15 9 455 15 494 1.62e-52 184
Msa0508400 AT5G26310.1 30.000 480 254 17 15 445 14 460 2.23e-52 184
Msa0508400 AT2G30140.1 28.540 459 289 13 9 449 14 451 2.02e-51 180
Msa0508400 AT2G30140.2 28.384 458 290 13 9 449 14 450 4.04e-51 179
Msa0508400 AT2G28080.1 30.144 418 266 9 12 408 22 434 8.58e-51 179
Msa0508400 AT2G36770.1 28.425 489 295 16 9 453 15 492 1.18e-50 179
Msa0508400 AT4G34131.1 30.816 490 273 16 9 451 11 481 2.13e-50 178
Msa0508400 AT4G15480.1 27.473 455 298 11 9 438 20 467 3.32e-50 178
Msa0508400 AT3G22250.1 29.801 453 275 14 1 422 1 441 5.43e-50 177
Msa0508400 AT2G30150.1 28.355 462 289 13 12 453 1 440 6.74e-50 176
Msa0508400 AT2G30150.2 28.172 465 292 13 9 453 14 456 1.27e-49 176
Msa0508400 AT1G24100.1 28.926 484 269 14 3 446 7 455 3.24e-49 174
Msa0508400 AT2G36800.1 27.846 492 295 15 9 453 13 491 3.96e-49 175
Msa0508400 AT2G36750.1 29.072 485 294 15 9 452 11 486 6.47e-49 174
Msa0508400 AT1G05530.1 29.487 468 278 14 9 446 6 451 1.34e-48 173
Msa0508400 AT5G17030.1 28.875 471 293 15 4 452 8 458 4.64e-48 171
Msa0508400 AT1G30530.1 28.289 456 289 15 14 452 19 453 1.99e-47 170
Msa0508400 AT4G01070.1 28.238 471 298 13 1 442 1 460 2.33e-47 170
Msa0508400 AT5G17040.1 27.533 454 298 13 11 452 8 442 2.94e-47 169
Msa0508400 AT3G16520.3 31.198 359 217 11 103 446 113 456 3.20e-47 169
Msa0508400 AT1G01420.1 29.362 470 293 15 1 442 1 459 1.80e-46 167
Msa0508400 AT1G05560.1 28.875 471 280 15 9 449 6 451 1.87e-46 167
Msa0508400 AT1G01420.2 29.362 470 293 15 1 442 4 462 1.94e-46 167
Msa0508400 AT4G34135.1 29.385 439 262 11 9 408 12 441 2.62e-46 167
Msa0508400 AT1G05560.2 28.875 471 280 15 9 449 56 501 2.90e-46 168
Msa0508400 AT3G53150.1 25.962 520 303 13 1 456 15 516 5.39e-46 167
Msa0508400 AT3G50740.1 29.735 491 277 18 1 445 1 469 1.10e-45 166
Msa0508400 AT3G21800.1 28.367 490 296 16 7 454 4 480 1.34e-45 165
Msa0508400 AT4G34138.1 28.854 506 285 19 3 458 6 486 2.02e-45 165
Msa0508400 AT1G22370.1 33.219 292 169 10 155 428 3 286 3.35e-45 160
Msa0508400 AT5G66690.1 29.339 484 252 19 15 445 14 460 5.15e-45 164
Msa0508400 AT4G14090.1 28.855 454 290 12 10 446 15 452 1.27e-44 162
Msa0508400 AT4G15550.1 28.980 490 269 18 6 446 11 470 1.40e-44 162
Msa0508400 AT3G21790.1 28.484 488 292 14 7 449 3 478 1.71e-44 162
Msa0508400 AT2G15480.1 29.237 472 279 14 9 438 11 469 2.17e-44 162
Msa0508400 AT5G17040.2 30.675 326 203 9 135 452 30 340 2.61e-44 158
Msa0508400 AT3G16520.1 30.725 345 209 11 103 432 113 442 6.21e-44 160
Msa0508400 AT3G16520.2 30.725 345 209 11 103 432 113 442 6.59e-44 160
Msa0508400 AT2G15490.3 29.149 470 282 16 9 438 8 466 6.77e-44 160
Msa0508400 AT2G15480.2 28.690 481 280 14 9 438 11 479 9.52e-44 160
Msa0508400 AT2G15490.1 28.964 473 282 16 9 438 8 469 1.38e-43 160
Msa0508400 AT1G10400.1 28.512 484 280 17 3 446 2 459 5.13e-43 158
Msa0508400 AT3G21780.1 28.310 491 289 17 9 456 5 475 3.01e-41 153
Msa0508400 AT1G07250.1 28.400 500 280 21 1 450 2 473 3.88e-41 153
Msa0508400 AT4G15280.2 27.328 494 297 14 2 450 30 506 4.80e-41 153
Msa0508400 AT1G01390.1 28.692 474 301 12 1 446 1 465 5.28e-41 153
Msa0508400 AT4G15280.1 27.515 487 291 14 9 450 5 474 5.72e-41 152
Msa0508400 AT1G01390.2 28.692 474 301 12 1 446 18 482 7.54e-41 152
Msa0508400 AT2G29740.1 28.049 492 287 16 1 446 1 471 1.40e-40 151
Msa0508400 AT3G21760.1 28.252 492 296 16 9 454 5 485 3.14e-40 150
Msa0508400 AT3G21750.1 28.455 492 281 15 9 453 5 472 6.90e-40 149
Msa0508400 AT2G18570.1 27.463 477 278 17 10 442 7 459 4.19e-39 147
Msa0508400 AT4G36770.1 26.681 461 278 14 11 432 7 446 1.96e-38 145
Msa0508400 AT2G29730.1 26.195 481 305 15 5 452 2 465 6.38e-38 144
Msa0508400 AT4G15260.1 29.600 375 214 11 112 454 3 359 1.29e-37 141
Msa0508400 AT5G12890.1 26.721 494 288 16 5 446 7 478 1.83e-37 143
Msa0508400 AT2G16890.2 27.755 490 277 19 4 446 5 464 4.06e-37 142
Msa0508400 AT5G14860.1 26.854 499 285 16 1 446 1 472 6.77e-37 142
Msa0508400 AT2G18560.1 28.660 321 191 9 151 442 58 369 1.70e-36 138
Msa0508400 AT5G03490.1 27.027 481 281 14 2 446 13 459 8.82e-36 138
Msa0508400 AT2G29710.1 25.887 479 305 14 5 450 2 463 5.52e-35 136
Msa0508400 AT2G16890.3 27.955 440 247 16 4 402 5 415 5.73e-35 135
Msa0508400 AT2G29750.1 25.904 498 309 12 1 456 1 480 2.07e-34 134
Msa0508400 AT1G51210.1 28.054 442 264 15 8 424 20 432 4.25e-34 133
Msa0508400 AT1G07240.1 24.291 494 309 13 5 451 2 477 8.04e-34 133
Msa0508400 AT1G73880.1 28.938 273 187 5 183 452 201 469 2.62e-31 125
Msa0508400 AT1G07260.1 26.263 396 258 11 76 450 90 472 3.23e-30 122
Msa0508400 AT5G49690.1 33.796 216 120 7 218 426 233 432 4.78e-27 113
Msa0508400 AT5G65550.1 25.754 431 278 14 18 421 19 434 1.88e-26 112
Msa0508400 AT1G06000.1 24.946 461 298 14 4 449 6 433 5.27e-24 104
Msa0508400 AT4G34135.2 27.019 322 201 8 8 301 11 326 1.18e-21 96.3
Msa0508400 AT2G22590.1 39.695 131 74 3 256 383 273 401 3.55e-19 90.1
Msa0508400 AT5G53990.1 31.892 185 117 6 249 426 236 418 1.77e-18 87.8
Msa0508400 AT3G29630.2 30.645 186 119 5 249 426 212 395 1.96e-17 84.7
Msa0508400 AT3G29630.1 30.645 186 119 5 249 426 238 421 2.04e-17 84.7
Msa0508400 AT4G01070.2 24.650 357 234 11 1 333 1 346 2.16e-17 84.0
Msa0508400 AT4G27570.1 23.810 441 293 18 7 426 6 424 2.78e-17 84.3
Msa0508400 AT5G54060.1 27.984 243 156 9 218 453 236 466 5.29e-17 83.6
Msa0508400 AT4G09500.2 26.908 249 165 7 185 426 180 418 1.43e-16 82.0
Msa0508400 AT5G54010.1 27.948 229 148 8 205 426 206 424 2.00e-16 81.6
Msa0508400 AT1G64910.1 27.074 229 150 8 205 426 200 418 2.98e-16 81.3
Msa0508400 AT4G27560.1 27.189 217 145 7 251 460 244 454 8.52e-16 79.7
Msa0508400 AT2G22930.1 25.301 249 169 7 185 426 180 418 1.72e-15 79.0
Msa0508400 AT1G64920.1 27.119 236 145 9 205 426 200 422 8.39e-15 76.6
Msa0508400 AT4G09500.1 29.189 185 122 5 249 426 211 393 2.70e-14 75.1
Msa0508400 AT2G16890.4 25.610 328 183 13 4 293 5 309 4.08e-12 67.4
Msa0508400 AT2G16890.1 25.610 328 183 13 4 293 5 309 4.08e-12 67.4

Find 101 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCACATAAACCACAGATTT+TGG 0.144274 3_4:+56380180 None:intergenic
TGCTTCAAATCTCTTGAATT+TGG 0.183072 3_4:-56382573 Msa0508400:CDS
ATTAAAACTTGTGTGAATTA+TGG 0.230496 3_4:+56382664 None:intergenic
TTAACCATGAAATGCAATTT+TGG 0.231234 3_4:+56380214 None:intergenic
ATCAAGCTATTGGTTTGTTT+TGG 0.251164 3_4:-56379948 Msa0508400:CDS
GTTGCATTTAGAATCTAAAT+TGG 0.256347 3_4:-56380511 Msa0508400:intron
GCTAAGGTTTGTTTGGAAAA+AGG 0.264389 3_4:-56379685 Msa0508400:CDS
GTAGAGGCTATATAGTAAAA+TGG 0.270065 3_4:-56379996 Msa0508400:CDS
CATACCTAGCATTCACCTTT+TGG 0.288508 3_4:+56379848 None:intergenic
AAGACCAAAATTGCATTTCA+TGG 0.298065 3_4:-56380218 Msa0508400:CDS
GAGGATAGTTTGAGGGGTTA+AGG 0.303205 3_4:+56382639 None:intergenic
TGGTTCTTCTTGTTCTGCTT+TGG 0.314215 3_4:-56379662 Msa0508400:CDS
TACTTGTGAAAAGGGCCTAT+TGG 0.318872 3_4:+56380285 None:intergenic
TTGTTCTGCTTTGGAAAGTT+TGG 0.319648 3_4:-56379653 Msa0508400:CDS
ATTCTAGCTCATCAAGCTAT+TGG 0.324071 3_4:-56379958 Msa0508400:CDS
TGGCTCGAGCCGTTGCCAAA+TGG 0.336416 3_4:-56380039 Msa0508400:CDS
GGAAGAGGCTAAGGTTTGTT+TGG 0.344334 3_4:-56379692 Msa0508400:CDS
AGGATAGTTTGAGGGGTTAA+GGG 0.345826 3_4:+56382640 None:intergenic
GGTTCCTTTGTGTTGATCAT+TGG 0.346600 3_4:+56380444 None:intergenic
ACTTGTGAAAAGGGCCTATT+GGG 0.349426 3_4:+56380286 None:intergenic
AAGCCTCATTAGGAGTGATT+TGG 0.356466 3_4:-56380377 Msa0508400:CDS
AGATAGAGCTTTGAAATTGA+AGG 0.364951 3_4:-56379713 Msa0508400:CDS
AATCACTCCTAATGAGGCTT+TGG 0.370964 3_4:+56380380 None:intergenic
ACTTGTGTGAATTATGGTTA+TGG 0.371137 3_4:+56382670 None:intergenic
GCACAAATCCTTTACTCAAA+TGG 0.375219 3_4:-56382698 Msa0508400:CDS
GAAGAAGACGTATTGTTAGT+AGG 0.383886 3_4:+56380258 None:intergenic
TCAATTCCAATGTTCCCAAT+AGG 0.388977 3_4:-56380300 Msa0508400:CDS
TGTGTCCTTGTAATGGTAAA+GGG 0.397029 3_4:+56382741 None:intergenic
ATGATTCACTTAAACCATCT+TGG 0.400138 3_4:+56382597 None:intergenic
AAATTCTCCATGAACCCATT+TGG 0.405701 3_4:+56380024 None:intergenic
GGCTCGAGCCGTTGCCAAAT+GGG 0.411639 3_4:-56380038 Msa0508400:CDS
ATTAATTCGTAATATTTCTC+TGG 0.416271 3_4:+56380423 None:intergenic
GTAGGGAAATACTTGTGAAA+AGG 0.419729 3_4:+56380276 None:intergenic
AATGCAAACTAACCTTGTAT+AGG 0.421654 3_4:+56382320 None:intergenic
ACATTGGAATTGAAAATTGT+TGG 0.424165 3_4:+56380310 None:intergenic
TAGTTGTGTGAAGCCTTTCA+AGG 0.425424 3_4:-56382534 Msa0508400:CDS
TCTGTGGTTTATGTGAGTTT+TGG 0.429677 3_4:-56380174 Msa0508400:CDS
CTTATCCCTTTACCATTACA+AGG 0.430466 3_4:-56382746 Msa0508400:CDS
CTAGGTATGTGAGTCATGTT+TGG 0.431164 3_4:-56379834 Msa0508400:CDS
GGGTTCATGGAGAATTTAGA+AGG 0.438654 3_4:-56380018 Msa0508400:CDS
TCTGATATCAAGCAAGCAAT+AGG 0.439864 3_4:+56382473 None:intergenic
TTGAAGTGAGGATAGTTTGA+GGG 0.443153 3_4:+56382632 None:intergenic
GCCGTTGCCAAATGGGTTCA+TGG 0.444513 3_4:-56380031 Msa0508400:CDS
AAACAAGGCATGCATATCAT+AGG 0.447575 3_4:+56379877 None:intergenic
AACAAAACCAAAGCCTCATT+AGG 0.448944 3_4:-56380387 Msa0508400:CDS
ATGTGTCCTTGTAATGGTAA+AGG 0.449617 3_4:+56382740 None:intergenic
TAGAGGCTATATAGTAAAAT+GGG 0.450077 3_4:-56379995 Msa0508400:CDS
TTGGAACACCTTTGAAGACT+TGG 0.454604 3_4:-56380358 Msa0508400:CDS
TAGGGAAATACTTGTGAAAA+GGG 0.457669 3_4:+56380277 None:intergenic
ATTGGATTGCAATTAGAGAA+TGG 0.464049 3_4:-56379808 Msa0508400:CDS
CATTGGAGAGTGTTTGTGAA+GGG 0.469106 3_4:-56379903 Msa0508400:CDS
AACTTCTGTTGTATCCAAGA+TGG 0.470730 3_4:-56382611 Msa0508400:CDS
GCCTTGTTTCACTGACCAAA+AGG 0.475598 3_4:-56379863 Msa0508400:CDS
ATTTGTGCAAGTTGAAGCAT+TGG 0.476729 3_4:+56382713 None:intergenic
GAAATTGAAGGAAGAGGCTA+AGG 0.481858 3_4:-56379701 Msa0508400:CDS
CTACAAGCTTTAAGCTTCCA+AGG 0.483823 3_4:-56382421 Msa0508400:CDS
GTTGAAGTGAGGATAGTTTG+AGG 0.486496 3_4:+56382631 None:intergenic
AAGCCTTTCAAGGAGTGCTT+AGG 0.491426 3_4:-56382524 Msa0508400:CDS
TGAAGTGAGGATAGTTTGAG+GGG 0.493501 3_4:+56382633 None:intergenic
GGATTTATGTGTCCTTGTAA+TGG 0.493771 3_4:+56382734 None:intergenic
TAGGTATGTGAGTCATGTTT+GGG 0.495739 3_4:-56379833 Msa0508400:CDS
AAGAAGACGTATTGTTAGTA+GGG 0.497757 3_4:+56380259 None:intergenic
GCTCGAGCCACTCGTGGCCA+TGG 0.500718 3_4:+56380052 None:intergenic
AGCTTTGAAATTGAAGGAAG+AGG 0.501727 3_4:-56379707 Msa0508400:CDS
CCAGTTCTCAAAACAAGCCT+TGG 0.504265 3_4:+56382404 None:intergenic
TTACCTAAGCACTCCTTGAA+AGG 0.512347 3_4:+56382521 None:intergenic
AATGGGTATTTGCCTATACA+AGG 0.521663 3_4:-56382332 Msa0508400:intron
ATGGAGAATTTAGAAGGTAG+AGG 0.527156 3_4:-56380012 Msa0508400:CDS
TGGAGAGAGGGAAAATAGAG+AGG 0.531549 3_4:-56379783 Msa0508400:CDS
ATGATGGAAGATAATAATGA+AGG 0.532440 3_4:-56379748 Msa0508400:CDS
TGTTGGCTTAGTGTTGATAG+TGG 0.533305 3_4:+56380327 None:intergenic
GCATTTAGAATCTAAATTGG+AGG 0.534793 3_4:-56380508 Msa0508400:intron
TTAGAGAATGGAATGGAGAG+AGG 0.535576 3_4:-56379796 Msa0508400:CDS
TAGAGAATGGAATGGAGAGA+GGG 0.543887 3_4:-56379795 Msa0508400:CDS
CTGACCAAAAGGTGAATGCT+AGG 0.549060 3_4:-56379852 Msa0508400:CDS
CACATCAATGAAGGAAACAA+AGG 0.550670 3_4:-56382783 None:intergenic
AAAGGGCCTATTGGGAACAT+TGG 0.555112 3_4:+56380294 None:intergenic
ATTGCAATTAGAGAATGGAA+TGG 0.555920 3_4:-56379803 Msa0508400:CDS
TGAGCTAGAATTTCTTGTTG+TGG 0.558424 3_4:+56379970 None:intergenic
ACATCAATGAAGGAAACAAA+GGG 0.564697 3_4:-56382782 None:intergenic
TCCATGAACCCATTTGGCAA+CGG 0.570847 3_4:+56380030 None:intergenic
TAATGGTTGGAATTCAACAT+TGG 0.571035 3_4:-56379920 Msa0508400:CDS
ATTGGAGAGTGTTTGTGAAG+GGG 0.571809 3_4:-56379902 Msa0508400:CDS
GTTCCAAATCACTCCTAATG+AGG 0.578967 3_4:+56380374 None:intergenic
ACATTGGAGAGTGTTTGTGA+AGG 0.601126 3_4:-56379904 Msa0508400:CDS
TCGTGGCCATGGATTAGTCC+CGG 0.602005 3_4:+56380063 None:intergenic
GGTAAGTCTTTCACTCTGAG+TGG 0.604688 3_4:+56380465 None:intergenic
AAGTCTTTCACTCTGAGTGG+TGG 0.605442 3_4:+56380468 None:intergenic
GACTAATCCATGGCCACGAG+TGG 0.606895 3_4:-56380059 Msa0508400:CDS
GTTCGACCGGGACTAATCCA+TGG 0.611414 3_4:-56380069 Msa0508400:CDS
TAATGACTCCAAGTCTTCAA+AGG 0.615760 3_4:+56380350 None:intergenic
ACTACTATGTGATGTATCTG+AGG 0.619410 3_4:-56382498 Msa0508400:CDS
GCAACGGCTCGAGCCACTCG+TGG 0.629369 3_4:+56380046 None:intergenic
GGTATGTGAGTCATGTTTGG+GGG 0.636763 3_4:-56379831 Msa0508400:CDS
AAAGGCAGCAAAAGCAACAA+AGG 0.641065 3_4:+56382370 None:intergenic
CAAACACAAGCCAAAATCTG+TGG 0.659987 3_4:-56380190 Msa0508400:CDS
CTTACCAATGATCAACACAA+AGG 0.663118 3_4:-56380448 Msa0508400:CDS
AGGTATGTGAGTCATGTTTG+GGG 0.668881 3_4:-56379832 Msa0508400:CDS
AAGTGTAGCTTCAATAACCG+AGG 0.706182 3_4:-56380151 Msa0508400:CDS
TGTAGCTTCAATAACCGAGG+CGG 0.714847 3_4:-56380148 Msa0508400:CDS
ATACAACAGAAGTTGAAGTG+AGG 0.717611 3_4:+56382620 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATTATATATCTGTT+TGG - chr3_4:56381511-56381530 Msa0508400:intron 10.0%
!!! TTTTATGAGTTTAAGAAATA+TGG - chr3_4:56380234-56380253 Msa0508400:CDS 15.0%
!!! TTAATTAAGGTTTTTTTTTC+TGG - chr3_4:56380778-56380797 Msa0508400:intron 15.0%
!! ATTAAAACTTGTGTGAATTA+TGG + chr3_4:56379721-56379740 None:intergenic 20.0%
!!! ATTTTCTCTCAAAAATGTAA+AGG + chr3_4:56380033-56380052 None:intergenic 20.0%
!!! TTTACATTTTTGAGAGAAAA+TGG - chr3_4:56380032-56380051 Msa0508400:CDS 20.0%
!!! TTACATTTTTGAGAGAAAAT+GGG - chr3_4:56380033-56380052 Msa0508400:CDS 20.0%
!!! TGAATTTTCTAAGTTTTGAA+TGG - chr3_4:56380085-56380104 Msa0508400:CDS 20.0%
!!! TTCTTTTGAACTAAGATTAT+CGG + chr3_4:56380482-56380501 None:intergenic 20.0%
!! AAAACAAAATAAACTTGTGT+TGG + chr3_4:56381745-56381764 None:intergenic 20.0%
!! ATAGTAATCCAAAATGTAAA+TGG - chr3_4:56381776-56381795 Msa0508400:intron 20.0%
!! ATTAATTCGTAATATTTCTC+TGG + chr3_4:56381962-56381981 None:intergenic 20.0%
! CTCATAAAAATTGTTACCTA+CGG + chr3_4:56380223-56380242 None:intergenic 25.0%
!!! GGATGTACTATTTTTAATCA+AGG + chr3_4:56380443-56380462 None:intergenic 25.0%
!! TTTTCACATGTTGAAAAAAC+AGG - chr3_4:56380553-56380572 Msa0508400:intron 25.0%
!!! CATTGCTAGCATTTTAATTA+AGG - chr3_4:56380765-56380784 Msa0508400:intron 25.0%
! TTGAAAAGTGAAGATAACAA+CGG + chr3_4:56380874-56380893 None:intergenic 25.0%
!!! TTAAACCTGTTTTGATACAT+GGG + chr3_4:56380954-56380973 None:intergenic 25.0%
!!! ATTAAACCTGTTTTGATACA+TGG + chr3_4:56380955-56380974 None:intergenic 25.0%
! ATATTGTCTCTGAATTAGAT+TGG + chr3_4:56381045-56381064 None:intergenic 25.0%
! AATATTCTTGCAAATGTTCT+TGG + chr3_4:56381217-56381236 None:intergenic 25.0%
! GAAAGAAAACATTTCTAACA+TGG + chr3_4:56381305-56381324 None:intergenic 25.0%
!!! CATTAACAAAAGTGCTTTTT+GGG + chr3_4:56381470-56381489 None:intergenic 25.0%
!!! TCATTAACAAAAGTGCTTTT+TGG + chr3_4:56381471-56381490 None:intergenic 25.0%
!! TTTAGAAGCCATTTACATTT+TGG + chr3_4:56381787-56381806 None:intergenic 25.0%
!! GTTGCATTTAGAATCTAAAT+TGG - chr3_4:56381871-56381890 Msa0508400:intron 25.0%
! ACATTGGAATTGAAAATTGT+TGG + chr3_4:56382075-56382094 None:intergenic 25.0%
!! TTAACCATGAAATGCAATTT+TGG + chr3_4:56382171-56382190 None:intergenic 25.0%
!!! ACAGTAATTATCCATTTTTG+TGG - chr3_4:56382287-56382306 Msa0508400:intron 25.0%
!!! CAGTAATTATCCATTTTTGT+GGG - chr3_4:56382288-56382307 Msa0508400:intron 25.0%
! TAGAGGCTATATAGTAAAAT+GGG - chr3_4:56382387-56382406 Msa0508400:CDS 25.0%
!! ATGATGGAAGATAATAATGA+AGG - chr3_4:56382634-56382653 Msa0508400:CDS 25.0%
TGGAAAAACCATTTGAGTAA+AGG + chr3_4:56379695-56379714 None:intergenic 30.0%
ACTTGTGTGAATTATGGTTA+TGG + chr3_4:56379715-56379734 None:intergenic 30.0%
ATGATTCACTTAAACCATCT+TGG + chr3_4:56379788-56379807 None:intergenic 30.0%
TGCTTCAAATCTCTTGAATT+TGG - chr3_4:56379809-56379828 Msa0508400:CDS 30.0%
AATGCAAACTAACCTTGTAT+AGG + chr3_4:56380065-56380084 None:intergenic 30.0%
!!! TTCTAAGTTTTGAATGGACT+AGG - chr3_4:56380091-56380110 Msa0508400:CDS 30.0%
!!! TCTAAGTTTTGAATGGACTA+GGG - chr3_4:56380092-56380111 Msa0508400:CDS 30.0%
ATGTTGATCGACAAAGTTAT+TGG - chr3_4:56380323-56380342 Msa0508400:CDS 30.0%
ACTTAGAATTATACAGGAAG+AGG + chr3_4:56380368-56380387 None:intergenic 30.0%
CACATCACTTAGAATTATAC+AGG + chr3_4:56380374-56380393 None:intergenic 30.0%
TCGAATGATATATGCTCTTA+TGG + chr3_4:56380513-56380532 None:intergenic 30.0%
CATGTGAAAATTCTTGAAGT+GGG + chr3_4:56380543-56380562 None:intergenic 30.0%
ACATGTGAAAATTCTTGAAG+TGG + chr3_4:56380544-56380563 None:intergenic 30.0%
! AAAAACAGGTTGGAAACATA+TGG - chr3_4:56380567-56380586 Msa0508400:intron 30.0%
!! GTTCTGAAATCTTGGAAATA+TGG + chr3_4:56380847-56380866 None:intergenic 30.0%
AACAGGTTTAATATGCTCAT+AGG - chr3_4:56380963-56380982 Msa0508400:intron 30.0%
TTAATATGCTCATAGGAAGA+TGG - chr3_4:56380970-56380989 Msa0508400:intron 30.0%
!! AAGCAAAGAGTATCTCAAAT+CGG + chr3_4:56381147-56381166 None:intergenic 30.0%
TAACATGGAAAATGAGAAGT+GGG + chr3_4:56381290-56381309 None:intergenic 30.0%
CTGAACATAGAGAAATTTGA+TGG + chr3_4:56381400-56381419 None:intergenic 30.0%
!!! GCAATGTCAAATTTTTCAAG+TGG + chr3_4:56381430-56381449 None:intergenic 30.0%
ATGCTCTCTATAGATAATAC+TGG + chr3_4:56381686-56381705 None:intergenic 30.0%
CTAAATGCAACATGTAGAAA+TGG + chr3_4:56381862-56381881 None:intergenic 30.0%
! GCATTTAGAATCTAAATTGG+AGG - chr3_4:56381874-56381893 Msa0508400:intron 30.0%
TAGGGAAATACTTGTGAAAA+GGG + chr3_4:56382108-56382127 None:intergenic 30.0%
AAGAAGACGTATTGTTAGTA+GGG + chr3_4:56382126-56382145 None:intergenic 30.0%
AAGACCAAAATTGCATTTCA+TGG - chr3_4:56382164-56382183 Msa0508400:intron 30.0%
GTAGAGGCTATATAGTAAAA+TGG - chr3_4:56382386-56382405 Msa0508400:CDS 30.0%
!!! ATCAAGCTATTGGTTTGTTT+TGG - chr3_4:56382434-56382453 Msa0508400:CDS 30.0%
TAATGGTTGGAATTCAACAT+TGG - chr3_4:56382462-56382481 Msa0508400:CDS 30.0%
ATTGGATTGCAATTAGAGAA+TGG - chr3_4:56382574-56382593 Msa0508400:CDS 30.0%
ATTGCAATTAGAGAATGGAA+TGG - chr3_4:56382579-56382598 Msa0508400:CDS 30.0%
GAGGACTATTAGAAAAATGA+TGG - chr3_4:56382618-56382637 Msa0508400:CDS 30.0%
!! AGATAGAGCTTTGAAATTGA+AGG - chr3_4:56382669-56382688 Msa0508400:CDS 30.0%
! GGTTGTTCATATTTTGTCAT+TGG - chr3_4:56382750-56382769 Msa0508400:CDS 30.0%
CTTATCCCTTTACCATTACA+AGG - chr3_4:56379636-56379655 Msa0508400:CDS 35.0%
TGTGTCCTTGTAATGGTAAA+GGG + chr3_4:56379644-56379663 None:intergenic 35.0%
ATGTGTCCTTGTAATGGTAA+AGG + chr3_4:56379645-56379664 None:intergenic 35.0%
GGATTTATGTGTCCTTGTAA+TGG + chr3_4:56379651-56379670 None:intergenic 35.0%
! ATTTGTGCAAGTTGAAGCAT+TGG + chr3_4:56379672-56379691 None:intergenic 35.0%
GCACAAATCCTTTACTCAAA+TGG - chr3_4:56379684-56379703 Msa0508400:CDS 35.0%
TTGAAGTGAGGATAGTTTGA+GGG + chr3_4:56379753-56379772 None:intergenic 35.0%
ATACAACAGAAGTTGAAGTG+AGG + chr3_4:56379765-56379784 None:intergenic 35.0%
AACTTCTGTTGTATCCAAGA+TGG - chr3_4:56379771-56379790 Msa0508400:CDS 35.0%
ACTACTATGTGATGTATCTG+AGG - chr3_4:56379884-56379903 Msa0508400:CDS 35.0%
TCTGATATCAAGCAAGCAAT+AGG + chr3_4:56379912-56379931 None:intergenic 35.0%
AATGGGTATTTGCCTATACA+AGG - chr3_4:56380050-56380069 Msa0508400:CDS 35.0%
!!! CTAAGTTTTGAATGGACTAG+GGG - chr3_4:56380093-56380112 Msa0508400:CDS 35.0%
! TCTTGTGCACAAACTTTTGT+TGG + chr3_4:56380130-56380149 None:intergenic 35.0%
GACAAAGTTATTGGACTAAG+TGG - chr3_4:56380332-56380351 Msa0508400:CDS 35.0%
TTAATCAAGGTCGAGATTGT+TGG + chr3_4:56380430-56380449 None:intergenic 35.0%
CACATGTTGAAAAAACAGGT+TGG - chr3_4:56380557-56380576 Msa0508400:intron 35.0%
GTAAGGTCTAAGTGTTATGA+TGG + chr3_4:56380811-56380830 None:intergenic 35.0%
! CTTGGAAATATGGAAAGCAT+GGG + chr3_4:56380837-56380856 None:intergenic 35.0%
TCTTGGAAATATGGAAAGCA+TGG + chr3_4:56380838-56380857 None:intergenic 35.0%
AAGTGAAGATAACAACGGAA+TGG + chr3_4:56380869-56380888 None:intergenic 35.0%
CTAACATGGAAAATGAGAAG+TGG + chr3_4:56381291-56381310 None:intergenic 35.0%
! AGAGATGTGTTGATACAGTT+AGG + chr3_4:56381343-56381362 None:intergenic 35.0%
!!! ACAAAAGTGCTTTTTGGGAA+AGG + chr3_4:56381465-56381484 None:intergenic 35.0%
CTTACCAATGATCAACACAA+AGG - chr3_4:56381934-56381953 Msa0508400:intron 35.0%
AACAAAACCAAAGCCTCATT+AGG - chr3_4:56381995-56382014 Msa0508400:intron 35.0%
TAATGACTCCAAGTCTTCAA+AGG + chr3_4:56382035-56382054 None:intergenic 35.0%
TCAATTCCAATGTTCCCAAT+AGG - chr3_4:56382082-56382101 Msa0508400:intron 35.0%
GTAGGGAAATACTTGTGAAA+AGG + chr3_4:56382109-56382128 None:intergenic 35.0%
GAAGAAGACGTATTGTTAGT+AGG + chr3_4:56382127-56382146 None:intergenic 35.0%
!!! GAAATGCAATTTTGGTCTTG+TGG + chr3_4:56382163-56382182 None:intergenic 35.0%
! CTCACATAAACCACAGATTT+TGG + chr3_4:56382205-56382224 None:intergenic 35.0%
! TCTGTGGTTTATGTGAGTTT+TGG - chr3_4:56382208-56382227 Msa0508400:intron 35.0%
AAATTCTCCATGAACCCATT+TGG + chr3_4:56382361-56382380 None:intergenic 35.0%
ATGGAGAATTTAGAAGGTAG+AGG - chr3_4:56382370-56382389 Msa0508400:CDS 35.0%
TGAGCTAGAATTTCTTGTTG+TGG + chr3_4:56382415-56382434 None:intergenic 35.0%
!! ATTCTAGCTCATCAAGCTAT+TGG - chr3_4:56382424-56382443 Msa0508400:CDS 35.0%
!!! GGTTTGTTTTGGACACATAA+TGG - chr3_4:56382445-56382464 Msa0508400:CDS 35.0%
!! TGTTTTGGACACATAATGGT+TGG - chr3_4:56382449-56382468 Msa0508400:CDS 35.0%
AAACAAGGCATGCATATCAT+AGG + chr3_4:56382508-56382527 None:intergenic 35.0%
TAGGTATGTGAGTCATGTTT+GGG - chr3_4:56382549-56382568 Msa0508400:CDS 35.0%
!! AGCTTTGAAATTGAAGGAAG+AGG - chr3_4:56382675-56382694 Msa0508400:CDS 35.0%
! GCTAAGGTTTGTTTGGAAAA+AGG - chr3_4:56382697-56382716 Msa0508400:CDS 35.0%
! AAGGTTTGTTTGGAAAAAGG+TGG - chr3_4:56382700-56382719 Msa0508400:CDS 35.0%
!! TTGTTCTGCTTTGGAAAGTT+TGG - chr3_4:56382729-56382748 Msa0508400:CDS 35.0%
AGGATAGTTTGAGGGGTTAA+GGG + chr3_4:56379745-56379764 None:intergenic 40.0%
TGAAGTGAGGATAGTTTGAG+GGG + chr3_4:56379752-56379771 None:intergenic 40.0%
GTTGAAGTGAGGATAGTTTG+AGG + chr3_4:56379754-56379773 None:intergenic 40.0%
TAGTTGTGTGAAGCCTTTCA+AGG - chr3_4:56379848-56379867 Msa0508400:CDS 40.0%
TTACCTAAGCACTCCTTGAA+AGG + chr3_4:56379864-56379883 None:intergenic 40.0%
!! CTACAAGCTTTAAGCTTCCA+AGG - chr3_4:56379961-56379980 Msa0508400:CDS 40.0%
AAAGGCAGCAAAAGCAACAA+AGG + chr3_4:56380015-56380034 None:intergenic 40.0%
CCTACGGAAACAAGTTTCTT+AGG + chr3_4:56380207-56380226 None:intergenic 40.0%
! CCTAAGAAACTTGTTTCCGT+AGG - chr3_4:56380204-56380223 Msa0508400:CDS 40.0%
ATATGGTGCAACTTCCATGT+TGG - chr3_4:56380584-56380603 Msa0508400:intron 40.0%
!! CATGTCCTCTGAGATTAAGT+CGG + chr3_4:56380628-56380647 None:intergenic 40.0%
AAAGGGTGAGTATTACTGGT+GGG + chr3_4:56380666-56380685 None:intergenic 40.0%
! AATTGAGAAGTGTGTCCTCA+TGG + chr3_4:56380709-56380728 None:intergenic 40.0%
TATCATCATATCCCATAGCG+AGG - chr3_4:56380738-56380757 Msa0508400:intron 40.0%
ATCATCATATCCCATAGCGA+GGG - chr3_4:56380739-56380758 Msa0508400:intron 40.0%
!! ACGGAATGGTTCTGAAATCT+TGG + chr3_4:56380855-56380874 None:intergenic 40.0%
TCCTTCCCATGTATCAAAAC+AGG - chr3_4:56380946-56380965 Msa0508400:intron 40.0%
!!! ACCTGTTTTGATACATGGGA+AGG + chr3_4:56380950-56380969 None:intergenic 40.0%
TATGCTCATAGGAAGATGGA+AGG - chr3_4:56380974-56380993 Msa0508400:intron 40.0%
ATGCTCATAGGAAGATGGAA+GGG - chr3_4:56380975-56380994 Msa0508400:intron 40.0%
!! ACAAAGCGTTGAGACTCATA+TGG + chr3_4:56381002-56381021 None:intergenic 40.0%
! CTCAAATCGGTTGTTGTTGA+AGG + chr3_4:56381134-56381153 None:intergenic 40.0%
!! AGCTTTGGGAGAAAGTTGAA+GGG + chr3_4:56381177-56381196 None:intergenic 40.0%
GATACAGTTAGGATCACACA+AGG + chr3_4:56381332-56381351 None:intergenic 40.0%
! GGTTCCTTTGTGTTGATCAT+TGG + chr3_4:56381941-56381960 None:intergenic 40.0%
AATCACTCCTAATGAGGCTT+TGG + chr3_4:56382005-56382024 None:intergenic 40.0%
AAGCCTCATTAGGAGTGATT+TGG - chr3_4:56382005-56382024 Msa0508400:intron 40.0%
GTTCCAAATCACTCCTAATG+AGG + chr3_4:56382011-56382030 None:intergenic 40.0%
! TTGGAACACCTTTGAAGACT+TGG - chr3_4:56382024-56382043 Msa0508400:intron 40.0%
!! TGTTGGCTTAGTGTTGATAG+TGG + chr3_4:56382058-56382077 None:intergenic 40.0%
ACTTGTGAAAAGGGCCTATT+GGG + chr3_4:56382099-56382118 None:intergenic 40.0%
TACTTGTGAAAAGGGCCTAT+TGG + chr3_4:56382100-56382119 None:intergenic 40.0%
CAAACACAAGCCAAAATCTG+TGG - chr3_4:56382192-56382211 Msa0508400:intron 40.0%
AAGTGTAGCTTCAATAACCG+AGG - chr3_4:56382231-56382250 Msa0508400:intron 40.0%
!! GGAGTTTTTGGAGATAGCTT+GGG - chr3_4:56382255-56382274 Msa0508400:intron 40.0%
!! GAGTTTTTGGAGATAGCTTG+GGG - chr3_4:56382256-56382275 Msa0508400:intron 40.0%
! ATTTTTGTGGGTAGTTCGAC+CGG - chr3_4:56382300-56382319 Msa0508400:intron 40.0%
GGGTTCATGGAGAATTTAGA+AGG - chr3_4:56382364-56382383 Msa0508400:CDS 40.0%
!! ACATTGGAGAGTGTTTGTGA+AGG - chr3_4:56382478-56382497 Msa0508400:CDS 40.0%
!! CATTGGAGAGTGTTTGTGAA+GGG - chr3_4:56382479-56382498 Msa0508400:CDS 40.0%
!! ATTGGAGAGTGTTTGTGAAG+GGG - chr3_4:56382480-56382499 Msa0508400:CDS 40.0%
! ACCTTTTGGTCAGTGAAACA+AGG + chr3_4:56382523-56382542 None:intergenic 40.0%
! CATACCTAGCATTCACCTTT+TGG + chr3_4:56382537-56382556 None:intergenic 40.0%
CTAGGTATGTGAGTCATGTT+TGG - chr3_4:56382548-56382567 Msa0508400:CDS 40.0%
AGGTATGTGAGTCATGTTTG+GGG - chr3_4:56382550-56382569 Msa0508400:CDS 40.0%
TTAGAGAATGGAATGGAGAG+AGG - chr3_4:56382586-56382605 Msa0508400:CDS 40.0%
TAGAGAATGGAATGGAGAGA+GGG - chr3_4:56382587-56382606 Msa0508400:CDS 40.0%
GAAATTGAAGGAAGAGGCTA+AGG - chr3_4:56382681-56382700 Msa0508400:CDS 40.0%
TGGTTCTTCTTGTTCTGCTT+TGG - chr3_4:56382720-56382739 Msa0508400:CDS 40.0%
GAGGATAGTTTGAGGGGTTA+AGG + chr3_4:56379746-56379765 None:intergenic 45.0%
!! AAGCCTTTCAAGGAGTGCTT+AGG - chr3_4:56379858-56379877 Msa0508400:CDS 45.0%
CCAGTTCTCAAAACAAGCCT+TGG + chr3_4:56379981-56380000 None:intergenic 45.0%
!!! CCAAGGCTTGTTTTGAGAAC+TGG - chr3_4:56379978-56379997 Msa0508400:CDS 45.0%
!!! AGGCTTGTTTTGAGAACTGG+TGG - chr3_4:56379981-56380000 Msa0508400:CDS 45.0%
ATCGGCGACGATAATGAAAG+CGG + chr3_4:56380464-56380483 None:intergenic 45.0%
!! ATCCACCGACTTAATCTCAG+AGG - chr3_4:56380620-56380639 Msa0508400:intron 45.0%
CAAAGGGTGAGTATTACTGG+TGG + chr3_4:56380667-56380686 None:intergenic 45.0%
TGGCAAAGGGTGAGTATTAC+TGG + chr3_4:56380670-56380689 None:intergenic 45.0%
GTAATACTCACCCTTTGCCA+TGG - chr3_4:56380670-56380689 Msa0508400:intron 45.0%
TTTCGTGATGCCATGGCAAA+GGG + chr3_4:56380683-56380702 None:intergenic 45.0%
! TTTTCGTGATGCCATGGCAA+AGG + chr3_4:56380684-56380703 None:intergenic 45.0%
! ATGGCATTTTCGTGATGCCA+TGG + chr3_4:56380690-56380709 None:intergenic 45.0%
! ATGGAAAGCATGGGCATGTA+AGG + chr3_4:56380828-56380847 None:intergenic 45.0%
!! GAGCTTTGGGAGAAAGTTGA+AGG + chr3_4:56381178-56381197 None:intergenic 45.0%
CTCGTCAACTAAGGAGCTTT+GGG + chr3_4:56381191-56381210 None:intergenic 45.0%
TCTTGGAACCTCGTCAACTA+AGG + chr3_4:56381200-56381219 None:intergenic 45.0%
AAGTCTTTCACTCTGAGTGG+TGG + chr3_4:56381917-56381936 None:intergenic 45.0%
GGTAAGTCTTTCACTCTGAG+TGG + chr3_4:56381920-56381939 None:intergenic 45.0%
AAAGGGCCTATTGGGAACAT+TGG + chr3_4:56382091-56382110 None:intergenic 45.0%
TGTAGCTTCAATAACCGAGG+CGG - chr3_4:56382234-56382253 Msa0508400:intron 45.0%
! AATAACCGAGGCGGAGTTTT+TGG - chr3_4:56382243-56382262 Msa0508400:intron 45.0%
TATCTCCAAAAACTCCGCCT+CGG + chr3_4:56382251-56382270 None:intergenic 45.0%
!! CGGAGTTTTTGGAGATAGCT+TGG - chr3_4:56382254-56382273 Msa0508400:intron 45.0%
GGTCGAACTACCCACAAAAA+TGG + chr3_4:56382301-56382320 None:intergenic 45.0%
! TTTTTGTGGGTAGTTCGACC+GGG - chr3_4:56382301-56382320 Msa0508400:intron 45.0%
TCCATGAACCCATTTGGCAA+CGG + chr3_4:56382355-56382374 None:intergenic 45.0%
!! GCCTTGTTTCACTGACCAAA+AGG - chr3_4:56382519-56382538 Msa0508400:CDS 45.0%
CTGACCAAAAGGTGAATGCT+AGG - chr3_4:56382530-56382549 Msa0508400:CDS 45.0%
GGTATGTGAGTCATGTTTGG+GGG - chr3_4:56382551-56382570 Msa0508400:CDS 45.0%
TGGAGAGAGGGAAAATAGAG+AGG - chr3_4:56382599-56382618 Msa0508400:CDS 45.0%
! GGAAGAGGCTAAGGTTTGTT+TGG - chr3_4:56382690-56382709 Msa0508400:CDS 45.0%
AAGGTCGAGATTGTTGGCGT+TGG + chr3_4:56380424-56380443 None:intergenic 50.0%
TGAAGAGCTTCCTGCCAACA+TGG + chr3_4:56380601-56380620 None:intergenic 50.0%
!! GTCCTCTGAGATTAAGTCGG+TGG + chr3_4:56380625-56380644 None:intergenic 50.0%
GGCATCACGAAAATGCCATG+AGG - chr3_4:56380691-56380710 Msa0508400:intron 50.0%
AGCAATGTCTCCCTCGCTAT+GGG + chr3_4:56380752-56380771 None:intergenic 50.0%
TAGCAATGTCTCCCTCGCTA+TGG + chr3_4:56380753-56380772 None:intergenic 50.0%
CCTCGTCAACTAAGGAGCTT+TGG + chr3_4:56381192-56381211 None:intergenic 50.0%
CCAAAGCTCCTTAGTTGACG+AGG - chr3_4:56381189-56381208 Msa0508400:intron 50.0%
GTGAGTCATGTTTGGGGGAT+TGG - chr3_4:56382556-56382575 Msa0508400:CDS 50.0%
GGTGCAACTTCCATGTTGGC+AGG - chr3_4:56380588-56380607 Msa0508400:intron 55.0%
GTTCGACCGGGACTAATCCA+TGG - chr3_4:56382313-56382332 Msa0508400:intron 55.0%
!! TCGTGGCCATGGATTAGTCC+CGG + chr3_4:56382322-56382341 None:intergenic 55.0%
GACTAATCCATGGCCACGAG+TGG - chr3_4:56382323-56382342 Msa0508400:intron 55.0%
! GCCGTTGCCAAATGGGTTCA+TGG - chr3_4:56382351-56382370 Msa0508400:CDS 55.0%
TGGCTCGAGCCGTTGCCAAA+TGG - chr3_4:56382343-56382362 Msa0508400:CDS 60.0%
GGCTCGAGCCGTTGCCAAAT+GGG - chr3_4:56382344-56382363 Msa0508400:CDS 60.0%
GCTCGAGCCACTCGTGGCCA+TGG + chr3_4:56382333-56382352 None:intergenic 70.0%
GCAACGGCTCGAGCCACTCG+TGG + chr3_4:56382339-56382358 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 56379606 56382798 56379606 ID=Msa0508400;Name=Msa0508400
chr3_4 mRNA 56379606 56382798 56379606 ID=Msa0508400-mRNA-1;Parent=Msa0508400;Name=Msa0508400-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0|1|1|1|2|0|460
chr3_4 exon 56382333 56382798 56382333 ID=Msa0508400-mRNA-1:exon:12699;Parent=Msa0508400-mRNA-1
chr3_4 exon 56379606 56380522 56379606 ID=Msa0508400-mRNA-1:exon:12698;Parent=Msa0508400-mRNA-1
chr3_4 CDS 56382333 56382798 56382333 ID=Msa0508400-mRNA-1:cds;Parent=Msa0508400-mRNA-1
chr3_4 CDS 56379606 56380522 56379606 ID=Msa0508400-mRNA-1:cds;Parent=Msa0508400-mRNA-1
Gene Sequence

>Msa0508400

ATGAAGGAAACAAAGGGTTATAGATTGTTGCTTATCCCTTTACCATTACAAGGACACATAAATCCAATGCTTCAACTTGCACAAATCCTTTACTCAAATGGTTTTTCCATAACCATAATTCACACAAGTTTTAATTCCCTTAACCCCTCAAACTATCCTCACTTCAACTTCTGTTGTATCCAAGATGGTTTAAGTGAATCATCTGCTTCAAATCTCTTGAATTTGGTAGTTGAACTCAACACTAGTTGTGTGAAGCCTTTCAAGGAGTGCTTAGGTAAACTACTATGTGATGTATCTGAGGAACCTATTGCTTGCTTGATATCAGATGCTATGTGTTATTTCACTCAAGATGTTGCTACAAGCTTTAAGCTTCCAAGGCTTGTTTTGAGAACTGGTGGTGCATCTTCCTTTGTTGCTTTTGCTGCCTTTACATTTTTGAGAGAAAATGGGTATTTGCCTATACAAGAATCTAAATTGGAGGATGCAGTGAAAGAGCTACCACCACTCAGAGTGAAAGACTTACCAATGATCAACACAAAGGAACCAGAGAAATATTACGAATTAATATGCAATTTTGTCAACAAAACCAAAGCCTCATTAGGAGTGATTTGGAACACCTTTGAAGACTTGGAGTCATTACCACTATCAACACTAAGCCAACAATTTTCAATTCCAATGTTCCCAATAGGCCCTTTTCACAAGTATTTCCCTACTAACAATACGTCTTCTTCTAGTAGCTTAATACCACAAGACCAAAATTGCATTTCATGGTTAAACAAACACAAGCCAAAATCTGTGGTTTATGTGAGTTTTGGAAGTGTAGCTTCAATAACCGAGGCGGAGTTTTTGGAGATAGCTTGGGGTTTAGTCAACAGTAATTATCCATTTTTGTGGGTAGTTCGACCGGGACTAATCCATGGCCACGAGTGGCTCGAGCCGTTGCCAAATGGGTTCATGGAGAATTTAGAAGGTAGAGGCTATATAGTAAAATGGGCACCACAACAAGAAATTCTAGCTCATCAAGCTATTGGTTTGTTTTGGACACATAATGGTTGGAATTCAACATTGGAGAGTGTTTGTGAAGGGGTTCCTATGATATGCATGCCTTGTTTCACTGACCAAAAGGTGAATGCTAGGTATGTGAGTCATGTTTGGGGGATTGGATTGCAATTAGAGAATGGAATGGAGAGAGGGAAAATAGAGAGGACTATTAGAAAAATGATGGAAGATAATAATGAAGGTAATGAGATTAGAGATAGAGCTTTGAAATTGAAGGAAGAGGCTAAGGTTTGTTTGGAAAAAGGTGGTTCTTCTTGTTCTGCTTTGGAAAGTTTGGTTGTTCATATTTTGTCATTGGTGTCATTTACTTTTGAAGCTTCATAG
Protein sequence

>Msa0508400

MKETKGYRLLLIPLPLQGHINPMLQLAQILYSNGFSITIIHTSFNSLNPSNYPHFNFCCIQDGLSESSASNLLNLVVELNTSCVKPFKECLGKLLCDVSEEPIACLISDAMCYFTQDVATSFKLPRLVLRTGGASSFVAFAAFTFLRENGYLPIQESKLEDAVKELPPLRVKDLPMINTKEPEKYYELICNFVNKTKASLGVIWNTFEDLESLPLSTLSQQFSIPMFPIGPFHKYFPTNNTSSSSSLIPQDQNCISWLNKHKPKSVVYVSFGSVASITEAEFLEIAWGLVNSNYPFLWVVRPGLIHGHEWLEPLPNGFMENLEGRGYIVKWAPQQEILAHQAIGLFWTHNGWNSTLESVCEGVPMICMPCFTDQKVNARYVSHVWGIGLQLENGMERGKIERTIRKMMEDNNEGNEIRDRALKLKEEAKVCLEKGGSSCSALESLVVHILSLVSFTFEAS*